Psyllid ID: psy10938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEEEEcEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVlpsaqcdfgmtssdkgwlnaapmLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIngfasrplipghpgkvasvcdvsalqpadnstvatcsgevnpevfSHTLIIGLacipsslampLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSStfgrfggltgnlmfgfliDGHCLILICTLAAMLLIAGVFsmflpatgkkeld
Flexible Loop (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMflpatgkkeld
Low Complexity Region (SEG)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD
Disordered region (IsUnstruct)
*******QFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLP********
Disordered Region (DISOPRED)
************FENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLP*TG*****
Disordered Region (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD
Disordered Region (DISPRO)
********FDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPAT******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q69ZS6	727	Synaptic vesicle glycopro	yes	N/A	0.410	0.177	0.364	5e-13
Q9Z2I6	727	Synaptic vesicle glycopro	yes	N/A	0.410	0.177	0.364	9e-13
Q496J9	727	Synaptic vesicle glycopro	yes	N/A	0.410	0.177	0.364	9e-13
Q7L1I2	683	Synaptic vesicle glycopro	no	N/A	0.398	0.183	0.384	1e-12
Q8BG39	683	Synaptic vesicle glycopro	no	N/A	0.385	0.177	0.371	2e-11
Q8N4V2	548	Synaptic vesicle 2-relate	no	N/A	0.398	0.228	0.330	5e-11
Q5R5T8	548	Synaptic vesicle 2-relate	no	N/A	0.398	0.228	0.330	5e-11
Q1JP63	548	Synaptic vesicle 2-relate	no	N/A	0.398	0.228	0.330	5e-11
Q8BFT9	548	Synaptic vesicle 2-relate	no	N/A	0.398	0.228	0.322	9e-11
Q63564	683	Synaptic vesicle glycopro	no	N/A	0.385	0.177	0.363	1e-10

>sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLS 251

Query: 127 GFASRPLIP 135
           GF     IP
Sbjct: 252 GFGIGGAIP 260

Receptor for the botulinium neurotoxin type A/BOTA.
Mus musculus (taxid: 10090)

>sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLS 251

Query: 127 GFASRPLIP 135
           GF     IP
Sbjct: 252 GFGIGGAIP 260

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q496J9|SV2C_HUMAN Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLS 251

Query: 127 GFASRPLIP 135
           GF     IP
Sbjct: 252 GFGIGGAIP 260

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Homo sapiens (taxid: 9606)

>sp|Q7L1I2|SV2B_HUMAN Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=2 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 66/125 (52%)

Query: 3   LDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTS 62
           L+  EQ    +E  +   G+G+F +IL    GL      + + V+SF LPSA+ D  ++S
Sbjct: 85  LEDEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSS 144

Query: 63  SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122
           S KG L     LGM+ G++  G LAD  GRK  L  +L V+      SS  Q YG FL  
Sbjct: 145 SKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFC 204

Query: 123 RFING 127
           R I+G
Sbjct: 205 RLISG 209

Probably plays a role in the control of regulated secretion in neural and endocrine cells.

Homo sapiens (taxid: 9606)

>sp|Q8BG39|SV2B_MOUSE Synaptic vesicle glycoprotein 2B OS=Mus musculus GN=Sv2b PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 63/121 (52%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    GL      + I V+SF LPSA+ D  ++SS KG
Sbjct: 89  EELAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEIFVVSFALPSAEKDMCLSSSKKG 148

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++  G LAD  GRK  L  +L ++      SS  Q YG FL  R I+
Sbjct: 149 MLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLIS 208

Query: 127 G 127
           G
Sbjct: 209 G 209

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 4   DFGEQFDATF--ENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT 61
           +F    D TF  E+A+ A G+GKF + L +  GL +   A+ + +LS + P   C++ + 
Sbjct: 59  EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLP 118

Query: 62  SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121
           S     L +   +GM+  S  WG ++D  GRK  L  ++L     GI S+ A  Y   L 
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178

Query: 122 LRFINGF 128
           LR + GF
Sbjct: 179 LRGLVGF 185

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 4   DFGEQFDATF--ENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT 61
           +F    D TF  E+A+ A G+GKF + L +  GL +   A+ + +LS + P   C++ + 
Sbjct: 59  EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLP 118

Query: 62  SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121
           S     L +   +GM+  S  WG ++D  GRK  L  ++L     GI S+ A  Y   L 
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178

Query: 122 LRFINGF 128
           LR + GF
Sbjct: 179 LRGLVGF 185

Pongo abelii (taxid: 9601)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 4   DFGEQFDATF--ENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT 61
           +F    D TF  E+A+ A G+GKF + L +  GL +   A+ + +LS + P   C++ + 
Sbjct: 59  EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLP 118

Query: 62  SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121
           S     L +   +GM+  S  WG ++D  GRK  L  ++L     GI S+ A  Y   L 
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178

Query: 122 LRFINGF 128
           LR + GF
Sbjct: 179 LRGLVGF 185

Bos taurus (taxid: 9913)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score = 68.2 bits (165), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 4   DFGEQFDATF--ENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT 61
           +F    D TF  E+A+ A G+G+F + L +  GL +   A+ + +LS + P   C++ + 
Sbjct: 59  EFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLP 118

Query: 62  SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121
           S     L +   +GM+  S  WG ++D  GRK  L  ++L     GI S+ A  Y   L 
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178

Query: 122 LRFINGF 128
           LR + GF
Sbjct: 179 LRGLVGF 185

Mus musculus (taxid: 10090)

>sp|Q63564|SV2B_RAT Synaptic vesicle glycoprotein 2B OS=Rattus norvegicus GN=Sv2b PE=1 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 62/121 (51%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           EQ    +E  +   G+G+F + L     L      + + V+SF LPSA+ D  ++SS KG
Sbjct: 89  EQLAHQYETIIDECGHGRFQWTLFFVLVLALMADGVEVFVVSFALPSAEKDMCLSSSKKG 148

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++  G LAD  GRK  L  +L ++      SS  Q YG FL  R I+
Sbjct: 149 MLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLIS 208

Query: 127 G 127
           G
Sbjct: 209 G 209

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
328777882	355	PREDICTED: synaptic vesicle glycoprotein	0.974	0.861	0.404	5e-58
345486887	513	PREDICTED: synaptic vesicle glycoprotein	0.566	0.346	0.546	9e-49
383856155	509	PREDICTED: synaptic vesicle glycoprotein	0.563	0.347	0.554	3e-48
357611405	543	hypothetical protein KGM_03534 [Danaus p	0.563	0.325	0.564	3e-48
340717508	510	PREDICTED: synaptic vesicle glycoprotein	0.563	0.347	0.552	7e-47
157131469	504	synaptic vesicle protein [Aedes aegypti]	0.563	0.351	0.55	8e-47
350407545	510	PREDICTED: synaptic vesicle glycoprotein	0.566	0.349	0.544	1e-46
189234743	512	PREDICTED: similar to synaptic vesicle p	0.566	0.347	0.554	2e-46
270001549	521	hypothetical protein TcasGA2_TC000393 [T	0.566	0.341	0.554	2e-46
332026137	539	Synaptic vesicle glycoprotein 2B [Acromy	0.563	0.328	0.560	3e-46

>gi|328777882|ref|XP_001122587.2| PREDICTED: synaptic vesicle glycoprotein 2C-like [Apis mellifera]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 190/363 (52%), Gaps = 57/363 (15%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLTICGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGMV GSY WGCLAD +GRK+ LI  LL+DG+ G+ SS  QY+ +FL
Sbjct: 61  DSTAKGWLTASPMLGMVVGSYIWGCLADIKGRKVVLIATLLMDGIVGVVSSFVQYFWIFL 120

Query: 121 ALRFINGFASRPLIPGHPGKVASVC--DVSALQPADNSTVATCSGE-------------- 164
             RF NGFA    + G  G    +C   +   QP        C  E              
Sbjct: 121 VFRFFNGFA----VTGAMG----ICFPYLGEFQPTKYREKCLCWMEMFWTVGVILLPLIA 172

Query: 165 --VNPEVF----------SHTLIIGLACIPS-SLAMPLLVHKMGAKWFLVAGLVLSSGVA 211
             + P  F          S  L + L  +PS  L + L       K+ L  G   ++   
Sbjct: 173 WLIIPMNFMYLTDTFYFKSWNLFVALCALPSLMLGLWLFAFPESPKFLLECGETDAALEV 232

Query: 212 MALYYVQ-----------------TSTQNLILSC---IFEALTGCCISVVYCIMVDLFPT 251
               Y Q                 T T++ I+      F+      IS+VYC++VD+FPT
Sbjct: 233 FKWIYSQNTGEDPDSYPVKSLQEKTKTKHEIVELHKERFKVFERLGISLVYCVIVDMFPT 292

Query: 252 NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKK 311
           NLRV+AAALS T GR G L GNL+FG+LID  C+I I   AA L + G  S  LP TGK+
Sbjct: 293 NLRVMAAALSLTMGRLGALVGNLVFGYLIDLACVIPIVLFAAFLFVCGFMSFLLPKTGKE 352

Query: 312 ELD 314
            L+
Sbjct: 353 TLE 355

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486887|ref|XP_001607777.2| PREDICTED: synaptic vesicle glycoprotein 2B-like [Nasonia vitripennis]

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 128/181 (70%), Gaps = 3/181 (1%)

Query: 137 HPGKVASVCDVSALQPADNSTVAT---CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHK 193
           HPG+  SVC VSAL  ++NST+     C   +   V+ HT+ IGLAC+P S+ +PL VHK
Sbjct: 333 HPGESTSVCIVSALDESNNSTIQDPYGCETTIASSVYLHTVYIGLACVPGSIVLPLFVHK 392

Query: 194 MGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNL 253
           +GAK+FL+  L++S GV +  YYV  + QNL+LSCIFEALT   IS+VYC++VD+FPTNL
Sbjct: 393 LGAKFFLILSLMVSGGVTVGFYYVTNANQNLVLSCIFEALTSLGISLVYCVIVDMFPTNL 452

Query: 254 RVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKEL 313
           RV+AAALS T GR G L GNL+FG+LID  C++ +   AA L   G  S+FLP TGK  L
Sbjct: 453 RVMAAALSLTMGRLGALVGNLVFGYLIDLACVVPVALFAAFLFACGFLSIFLPKTGKDTL 512

Query: 314 D 314
           D
Sbjct: 513 D 513

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856155|ref|XP_003703575.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Megachile rotundata]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 132/182 (72%), Gaps = 5/182 (2%)

Query: 136 GHPGKVASVCDVSALQPADNSTVAT---CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH 192
            +PGK  SVC VSAL   DN+ +A    C+  + P V+ HT+ IGLACIP S+ +P+ VH
Sbjct: 330 ANPGKTTSVCIVSAL--PDNAVLADPYGCNTVIAPSVYLHTVYIGLACIPGSIILPIFVH 387

Query: 193 KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN 252
           K+GAK+FL+  L++S+GV +A YYV  +TQNL+LSC+FEALT   IS+VYC++VD+FPTN
Sbjct: 388 KLGAKFFLIGSLLVSAGVTVAFYYVVNATQNLVLSCVFEALTSLGISLVYCVIVDMFPTN 447

Query: 253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKE 312
           LRV+AAALS T GR G L GNL+FG+LID  C++ I   AA L + G+ S  LP TGK  
Sbjct: 448 LRVMAAALSLTMGRLGALVGNLLFGYLIDLACVVPIVLFAAFLFLCGLMSFLLPKTGKDT 507

Query: 313 LD 314
           LD
Sbjct: 508 LD 509

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611405|gb|EHJ67462.1| hypothetical protein KGM_03534 [Danaus plexippus]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 132/179 (73%), Gaps = 2/179 (1%)

Query: 138 PGKVASVCDVSALQPADNSTVA--TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG 195
           PGK ASVCDVS++   D ++     C   ++  V++HTLI+GLACIP+SL +PL VHK+G
Sbjct: 365 PGKSASVCDVSSIVVKDENSKDPFDCEKIIDQSVYTHTLIVGLACIPTSLWLPLCVHKLG 424

Query: 196 AKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRV 255
           AK+FL+  L  +  V + LY+VQ STQNL+LSCIFEALT   IS+V+C++VDLFPTNLRV
Sbjct: 425 AKFFLIFSLGFAGVVTVGLYFVQNSTQNLVLSCIFEALTSLAISLVFCVLVDLFPTNLRV 484

Query: 256 LAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD 314
           +AAALS T GR GGL GNL FG+LID +C++ I   +A L IA +   FLP TG++ LD
Sbjct: 485 MAAALSLTAGRGGGLIGNLSFGYLIDINCVVPIVLFSAFLFIAAILCFFLPKTGQEALD 543

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717508|ref|XP_003397223.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Bombus terrestris]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/181 (55%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 137 HPGKVASVCDVSALQPADNSTVAT---CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHK 193
           +PG+  SVC VS+L  +DN T A    C   + P V+ HT+ IGLACIP S+ +P+ VHK
Sbjct: 331 YPGESTSVCIVSSLS-SDNGTTAQDYGCDSVIAPSVYLHTVYIGLACIPGSIILPIFVHK 389

Query: 194 MGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNL 253
           +GAK+FL+  L++S  V +A Y+V  +TQNLILSC+FEALT   IS+VYCI+VD+FPTNL
Sbjct: 390 LGAKFFLIMSLMVSGAVTVAFYFVVNATQNLILSCVFEALTSLGISLVYCIIVDMFPTNL 449

Query: 254 RVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKEL 313
           RV+AAALS T GR G L GNL+FG+LID  C++ I   AA L I G  S  LP TGK+ L
Sbjct: 450 RVMAAALSLTMGRLGALVGNLVFGYLIDLACVVPIILFAAFLFICGFMSFLLPKTGKETL 509

Query: 314 D 314
           +
Sbjct: 510 E 510

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131469|ref|XP_001655861.1| synaptic vesicle protein [Aedes aegypti] gi|108871532|gb|EAT35757.1| AAEL012098-PA, partial [Aedes aegypti]

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 130/180 (72%), Gaps = 3/180 (1%)

Query: 138 PGKVASVCDVSALQPAD-NSTVAT--CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM 194
           P   ASVCDVS++   + N T+    C G ++  V+ HTL IGLACIP+S  +PL VH++
Sbjct: 325 PNTPASVCDVSSIVLDNVNGTLVDDFCGGSIDTSVYLHTLFIGLACIPTSFWLPLCVHRL 384

Query: 195 GAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR 254
           GAK+FL++ L+L+  V + LY+V  S QNLILSC+FEALT   IS VYC+MVDLFPTNLR
Sbjct: 385 GAKFFLISSLLLAGAVTVGLYFVIDSKQNLILSCVFEALTSMAISTVYCVMVDLFPTNLR 444

Query: 255 VLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD 314
           V+AAALS TFGR G L GNL+FG+LID +C++ +   + ML I+G    FLP+TG + LD
Sbjct: 445 VMAAALSLTFGRGGALVGNLLFGYLIDLNCVVPVVIFSIMLFISGALCFFLPSTGSEALD 504

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407545|ref|XP_003488120.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Bombus impatiens]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 2/180 (1%)

Query: 137 HPGKVASVCDVSALQPADNSTVAT--CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM 194
           +PG+  SVC VS+L   + +TV    C   + P V+ HT+ IGLACIP S+ +P+ VHK+
Sbjct: 331 YPGESTSVCIVSSLSSDNGTTVQDYGCDTVIAPSVYLHTVYIGLACIPGSIILPIFVHKL 390

Query: 195 GAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR 254
           GAK+FL+  L++S  V +A Y+V  +TQNLILSC+FEALT   IS+VYCI+VD+FPTNLR
Sbjct: 391 GAKFFLIMSLMVSGAVTVAFYFVVNATQNLILSCVFEALTSLGISLVYCIIVDMFPTNLR 450

Query: 255 VLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD 314
           V+AAALS T GR G L GNL+FG+LID  C++ I   AA L I G  S  LP TGK+ L+
Sbjct: 451 VMAAALSLTMGRLGALVGNLVFGYLIDLACVVPIILFAAFLFICGFMSFLLPKTGKETLE 510

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234743|ref|XP_974142.2| PREDICTED: similar to synaptic vesicle protein [Tribolium castaneum]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 130/182 (71%), Gaps = 4/182 (2%)

Query: 137 HPGKVASVCDVSALQPADNSTVAT----CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH 192
           HP + A+VC+VS++    N T  +    C   +   VF HTLIIGLACIP+S  +PL VH
Sbjct: 331 HPNEKATVCEVSSVVVPVNMTTPSHEEFCGEPIADSVFLHTLIIGLACIPTSFWLPLCVH 390

Query: 193 KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN 252
           ++GAK+FLV  L+++  V   LY+V ++T NL+LSCIFEALT   IS VYC+MVDLFPTN
Sbjct: 391 RLGAKFFLVFSLLVAGAVTFGLYFVNSATSNLVLSCIFEALTSLGISTVYCVMVDLFPTN 450

Query: 253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKE 312
           LRV+AAALS TFGR G L GNL+FGFLID +C++ I   AAMLL +G+  + LP TG+  
Sbjct: 451 LRVMAAALSLTFGRGGALIGNLLFGFLIDLNCVVPIVLFAAMLLGSGLLCLMLPNTGQGA 510

Query: 313 LD 314
           LD
Sbjct: 511 LD 512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001549|gb|EEZ97996.1| hypothetical protein TcasGA2_TC000393 [Tribolium castaneum]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 130/182 (71%), Gaps = 4/182 (2%)

Query: 137 HPGKVASVCDVSALQPADNSTVAT----CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH 192
           HP + A+VC+VS++    N T  +    C   +   VF HTLIIGLACIP+S  +PL VH
Sbjct: 340 HPNEKATVCEVSSVVVPVNMTTPSHEEFCGEPIADSVFLHTLIIGLACIPTSFWLPLCVH 399

Query: 193 KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN 252
           ++GAK+FLV  L+++  V   LY+V ++T NL+LSCIFEALT   IS VYC+MVDLFPTN
Sbjct: 400 RLGAKFFLVFSLLVAGAVTFGLYFVNSATSNLVLSCIFEALTSLGISTVYCVMVDLFPTN 459

Query: 253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKE 312
           LRV+AAALS TFGR G L GNL+FGFLID +C++ I   AAMLL +G+  + LP TG+  
Sbjct: 460 LRVMAAALSLTFGRGGALIGNLLFGFLIDLNCVVPIVLFAAMLLGSGLLCLMLPNTGQGA 519

Query: 313 LD 314
           LD
Sbjct: 520 LD 521

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026137|gb|EGI66285.1| Synaptic vesicle glycoprotein 2B [Acromyrmex echinatior]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 126/182 (69%), Gaps = 5/182 (2%)

Query: 136 GHPGKVASVCDVSALQPADNSTVAT---CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH 192
            +PG+  SVC VSAL  +DN+T      C   + P V+ HT+ IGLACIP S+ +PL VH
Sbjct: 360 ANPGETTSVCIVSAL--SDNTTFFDPYGCDTIIAPSVYLHTVYIGLACIPGSIILPLFVH 417

Query: 193 KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN 252
           K+GAK+FL+  LV+S  V +  YYV  S QNL+LSC+FEALT   IS+VYC++VD+FPTN
Sbjct: 418 KLGAKFFLIFSLVVSGAVTVGFYYVVNSMQNLVLSCVFEALTSLGISLVYCVIVDMFPTN 477

Query: 253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKE 312
           LRV+AAALS T GR G L GNL+FG+LID  C+I I   AA L   G FS  LP TGK  
Sbjct: 478 LRVMAAALSLTMGRLGALVGNLVFGYLIDLACVIPIILFAAFLFACGFFSFLLPRTGKDT 537

Query: 313 LD 314
           LD
Sbjct: 538 LD 539

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
FB|FBgn0029896	632	CG3168 [Drosophila melanogaste	0.394	0.196	0.448	4.6e-52
ZFIN|ZDB-GENE-000607-80	541	id:ibd5037 "id:ibd5037" [Danio	0.394	0.229	0.411	1.6e-40
FB|FBgn0051272	563	CG31272 [Drosophila melanogast	0.385	0.214	0.363	2.4e-34
FB|FBgn0051106	513	CG31106 [Drosophila melanogast	0.528	0.323	0.271	1.5e-31
FB|FBgn0040350	558	CG3690 [Drosophila melanogaste	0.503	0.283	0.281	1.8e-29
MGI|MGI:1922459	727	Sv2c "synaptic vesicle glycopr	0.410	0.177	0.364	3.1e-27
FB|FBgn0037829	522	CG14691 [Drosophila melanogast	0.372	0.224	0.341	3.9e-27
RGD|619718	727	Sv2c "synaptic vesicle glycopr	0.410	0.177	0.364	5.4e-27
UNIPROTKB|Q496J9	727	SV2C "Synaptic vesicle glycopr	0.410	0.177	0.364	1.1e-26
UNIPROTKB|E1BLJ9	725	SV2C "Uncharacterized protein"	0.410	0.177	0.356	1.8e-26

FB|FBgn0029896 CG3168 [Drosophila melanogaster (taxid:7227)]

 Score = 296 (109.3 bits), Expect = 4.6e-52, Sum P(2) = 4.6e-52
 Identities = 57/127 (44%), Positives = 80/127 (62%)

Query:    11 ATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNA 70
             A FE A+   GYGKFHYIL+   GL+     + +  +SF+LPSA+CD  + +  KGWLN+
Sbjct:   135 ANFERAIELCGYGKFHYILLAICGLVSTSEEMDVISMSFILPSAECDLDLNTETKGWLNS 194

Query:    71 APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA- 129
                +GM+ G+YFWG +AD+ GRK  LI    ++  C +ASS +Q Y  F+  RF+NG A 
Sbjct:   195 IIFIGMMVGAYFWGSIADSFGRKKVLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAAL 254

Query:   130 --SRPLI 134
               S P+I
Sbjct:   255 GGSGPVI 261

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-000607-80 id:ibd5037 "id:ibd5037" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
 Identities = 51/124 (41%), Positives = 78/124 (62%)

Query:    12 TFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAA 71
             T+E A+  AG+G FH++L++  G   A  A+ I  +SF+LP+A+CD  ++S+D G L A+
Sbjct:    51 TYEEAVEKAGFGLFHWLLLVVCGWANASDAVEILCVSFLLPTARCDLQLSSADMGILTAS 110

Query:    72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR 131
               LGM+ G   WG LAD +GR+  L+ +L V+G  G  +S+A  + +FL LRF +G    
Sbjct:   111 IFLGMMVGGCVWGFLADRRGRRSVLVVSLAVNGTFGAVASLAPAFWLFLLLRFFSGVGVG 170

Query:   132 PLIP 135
               IP
Sbjct:   171 GSIP 174

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0051272 CG31272 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 44/121 (36%), Positives = 70/121 (57%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+  ATF+ A+  AG+G F+ +L+I      + A    + +S++LP A+CD  +T  DKG
Sbjct:    39 EEGSATFDKAIEGAGFGIFNLMLLIVSIPAQSAAIFESSSMSYILPIAECDLRLTLEDKG 98

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
              LNA    GM   +  WG LADT+GRK  L    L+D +C   S+++Q + + +  +F+ 
Sbjct:    99 VLNAVAYAGMTISAIAWGYLADTKGRKKILYWGYLIDAVCVFGSALSQNFSMLVMFKFLG 158

Query:   127 G 127
             G
Sbjct:   159 G 159

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016298 "lipase activity" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

FB|FBgn0051106 CG31106 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
 Identities = 45/166 (27%), Positives = 84/166 (50%)

Query:   141 VASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFL 200
             V  V D S  Q   N++   C   +N + +  T+  G A I   + M L+++ +G K  +
Sbjct:   347 VCQVIDASIDQMQANASNKICDDHINTKSYIDTITYGSALIVGYILMGLVINTIGRKASI 406

Query:   201 VAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAAL 260
               GL L+   A+AL +++     ++  C++  L G C+S++   +VDL PT+LR  A  +
Sbjct:   407 SIGLTLAGACAIALIFIKDEVAIVVCFCLYLVLPGLCVSILSGAVVDLVPTHLRGKAVCI 466

Query:   261 SSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLP 306
                 GR G + G+ + G L++ +C +     +  +L+    ++ LP
Sbjct:   467 CLMLGRTGSVFGSNIIGVLLESYCSLTFGVFSGFVLVCASLTLLLP 512

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0040350 CG3690 [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 45/160 (28%), Positives = 81/160 (50%)

Query:   155 NSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL 214
             N     C   + P  +++ LI+  A   + +    LV+ +G K  + +GL++++G ++ +
Sbjct:   399 NDPTVECHVIITPSTYTNNLIVAGAGFVAYMLAGFLVNLVGVKLIMTSGLLIAAGCSIGM 458

Query:   215 YYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNL 274
             Y+  ++   + L+ +F  +     + V    V LFPT+LR +  +L   FGR G L GN+
Sbjct:   459 YWSSSAASTVALASLFVTMGSISATSVISASVSLFPTSLRTMIVSLEMMFGRLGSLLGNI 518

Query:   275 MFGFLIDGHCLILICTLAAMLLIAGVF-SMFLPATGKKEL 313
              F  L+   C+     ++A +L AG F + FLP   K  L
Sbjct:   519 FFPALMGLGCVPPFLMISAFML-AGCFMAAFLPLKNKAAL 557

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

MGI|MGI:1922459 Sv2c "synaptic vesicle glycoprotein 2c" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLS 251

Query:   127 GFASRPLIP 135
             GF     IP
Sbjct:   252 GFGIGGAIP 260

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037829 CG14691 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
 Identities = 40/117 (34%), Positives = 64/117 (54%)

Query:    11 ATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNA 70
             A FE A+A  G+G F+  ++            S + LS+V+PSA+CD  ++  DKG L+A
Sbjct:    13 ADFETAIAECGFGLFNVFILCSAVPCLTAMVFSASALSYVMPSAECDLDLSIVDKGMLHA 72

Query:    71 APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFING 127
                 GM+  +  WG +ADT GR+  LI    +DG   + +S++Q     +A +F +G
Sbjct:    73 VTYAGMIISAVPWGFIADTIGRRPVLISGGWLDGFFVLCASLSQNTAQLMAFKFFDG 129

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|619718 Sv2c "synaptic vesicle glycoprotein 2c" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLS 251

Query:   127 GFASRPLIP 135
             GF     IP
Sbjct:   252 GFGIGGAIP 260

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|Q496J9 SV2C "Synaptic vesicle glycoprotein 2C" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 47/129 (36%), Positives = 70/129 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLS 251

Query:   127 GFASRPLIP 135
             GF     IP
Sbjct:   252 GFGIGGAIP 260

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|E1BLJ9 SV2C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 46/129 (35%), Positives = 70/129 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + ++G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSINGFFAFLSSFVQGYGFFLFCRLLS 251

Query:   127 GFASRPLIP 135
             GF     IP
Sbjct:   252 GFGIGGAIP 260

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-20
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-10
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	5e-07
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-06
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	9e-06
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	0.001
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.002
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.002

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 49/129 (37%), Positives = 67/129 (51%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    GL      + + V+ FVLPSA+ D  +  S KG
Sbjct: 146 EELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++FWG LAD  GRK  L+  L V+G     SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265

Query: 127 GFASRPLIP 135
           GF     IP
Sbjct: 266 GFGIGGAIP 274

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 27/103 (26%), Positives = 53/103 (51%)

Query: 25  FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG 84
           + +  +I   L+       +  + F  P+   ++G+     G+L +A ++GM FG+ F+G
Sbjct: 14  YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73

Query: 85  CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFING 127
            LAD  GR+  L+ ++L+  +  +  ++A      L LRF+ G
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG 116

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEAL 233
            I GL  +P+ L   LL+ ++G ++ + A L+L+    + L +V      L  +      
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421

Query: 234 TGCCI--SVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTL 291
            G      +VY    +L+PT +R L   + ST  R G +    +  +L +    + +   
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV-YLGEKWLFLPLVLF 480

Query: 292 AAMLLIAGVFSMFLPATGKKEL 313
             + L+AG+ ++FLP T    L
Sbjct: 481 GGLALLAGILTLFLPETKGVPL 502

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 46  VLSFVLPSAQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLADTQGRKITLIGALL 101
                  +   ++ +   D  W          +G++ GS+ +G L+D  GRK  L+ + L
Sbjct: 107 SYDTFSSTIVTEWDLVCEDA-WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTL 165

Query: 102 VDGLCGIASSVAQYYGVFLALRFINGFAS 130
           V  + G+ ++ +  Y VFL  R + G   
Sbjct: 166 VTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 18/279 (6%)

Query: 30  VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT 89
           ++   L +  + +   +LS  LP    D G+++S  G + +A  LG   GS   G L+D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 90  QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSA 149
            GR+  L+  LL+  L  +  + A    + L  RF+ G     L P     +A       
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 150 LQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSG 209
              A               +   +   GL  +   L   LL   +G +W  +   +L   
Sbjct: 121 RGRA---------------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165

Query: 210 VAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGG 269
           +A+ L ++      L L+    +     +     + +          A  L S FG  GG
Sbjct: 166 LALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFG-LGG 224

Query: 270 LTGNLMFGFLID--GHCLILICTLAAMLLIAGVFSMFLP 306
           + G L+ G L D  G   +L+     +  +  +     P
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 51  LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110
           LP    DFG+++       +A +LG   G  F+G +AD+ GRK  ++G  LV  L  +A 
Sbjct: 14  LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73

Query: 111 SVAQYYGVFLALRFINGFA 129
           ++AQ     + +RF++G A
Sbjct: 74  ALAQTIDQLIYMRFLHGLA 92

Length = 377

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 32/131 (24%), Positives = 60/131 (45%)

Query: 178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCC 237
           LA +P ++   LL+ K+G    L   +VLS      L +  + +  + L C+F  L+   
Sbjct: 606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAA 665

Query: 238 ISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLI 297
            + +  + V+L+P++ R  A    +   +   + G L+FG  +       I   +A L  
Sbjct: 666 WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALAC 725

Query: 298 AGVFSMFLPAT 308
            G+ ++ LP T
Sbjct: 726 GGLLALKLPDT 736

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 31/97 (31%), Positives = 46/97 (47%)

Query: 47  LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
           LSF  P  Q D G++++  G++ +A   G V G +  G L D  G + TL   +++ G+ 
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72

Query: 107 GIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVAS 143
               + A  Y     LR + G A  P  PG    VAS
Sbjct: 73  TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVAS 109

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 57  DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116
           +FG+  +  GW  +A +LG++ G+   G LAD  GRK  LI ++ + GL  +A++ A  +
Sbjct: 44  EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103

Query: 117 GVFLALRFING 127
              L  R + G
Sbjct: 104 PSLLVARLLTG 114

Length = 406

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 37/102 (36%)

Query: 28  ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
              +  G L     + I +     P    D    +S         +LG   G   WG L+
Sbjct: 5   AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLS 64

Query: 88  DTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
           D  GR+  L+  L +  L  +  +++      L LRF+  F 
Sbjct: 65  DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 35  LLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93
           L    A +  ++L   LP     D G++ ++ G L  A  LG        G L+D  GR+
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62

Query: 94  ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPG 136
             L+  LL+  L  +    A    + L LR + G     L P 
Sbjct: 63  RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPA 105

Length = 346

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 57  DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL-CGIASSVAQY 115
           D G++++  G L A P+L         G L D  G + T   +LL+  + C  A    Q 
Sbjct: 31  DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90

Query: 116 YGVFLALRFINGFA 129
           Y V L LR   G A
Sbjct: 91  YSVLLLLRLFIGIA 104

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 28  ILVIFGGLLYAY--------AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFG 79
           ++   GG L+ Y          +      F   ++      ++   G + +   +G + G
Sbjct: 3   LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62

Query: 80  SYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
           S F G L D  GRK +L+    L V G      +  + + + +  R I G  
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLG 114

Length = 449

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 46  VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105
           V   +LP    D G++    G L  A  LG+  G+     L     R+  L+G L +  +
Sbjct: 31  VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90

Query: 106 CGIASSVAQYYGVFLALRFINGFA 129
             + S++A  + V L  R + G A
Sbjct: 91  SNLLSALAPSFAVLLLARALAGLA 114

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0253|consensus	528		99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK03699	394	putative transporter; Provisional	99.95
PRK09705	393	cynX putative cyanate transporter; Provisional	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK03633	381	putative MFS family transporter protein; Provision	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.93
PRK03893	496	putative sialic acid transporter; Provisional	99.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK10091	382	MFS transport protein AraJ; Provisional	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.92
PRK15075	434	citrate-proton symporter; Provisional	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00895	398	2A0115 benzoate transport.	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
KOG0252|consensus	538		99.91
PRK10489	417	enterobactin exporter EntS; Provisional	99.91
KOG0569|consensus	485		99.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PRK10504	471	putative transporter; Provisional	99.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.91
PRK10133	438	L-fucose transporter; Provisional	99.91
TIGR00900	365	2A0121 H+ Antiporter protein.	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK10054	395	putative transporter; Provisional	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.87
PRK09528	420	lacY galactoside permease; Reviewed	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
KOG1330|consensus	493		99.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.84
KOG0254|consensus	513		99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.83
KOG0255|consensus	521		99.83
KOG2504|consensus	509		99.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.82
PRK11010	491	ampG muropeptide transporter; Validated	99.79
KOG2615|consensus	451		99.78
KOG4686|consensus	459		99.77
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.76
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.75
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.75
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.74
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.74
KOG2532|consensus	466		99.74
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.73
KOG3764|consensus	464		99.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.72
PRK11902	402	ampG muropeptide transporter; Reviewed	99.71
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.68
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.64
PTZ00207	591	hypothetical protein; Provisional	99.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.62
TIGR00901	356	2A0125 AmpG-related permease.	99.62
KOG2533|consensus	495		99.62
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.59
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.57
TIGR00805	633	oat sodium-independent organic anion transporter.	99.55
PRK09669	444	putative symporter YagG; Provisional	99.54
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.52
PF13347	428	MFS_2: MFS/sugar transport protein	99.52
PRK09848	448	glucuronide transporter; Provisional	99.52
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.44
TIGR00900	365	2A0121 H+ Antiporter protein.	99.44
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.43
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.42
TIGR00893	399	2A0114 d-galactonate transporter.	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.42
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.42
PRK10429	473	melibiose:sodium symporter; Provisional	99.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.41
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.41
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.4
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.39
PRK10054	395	putative transporter; Provisional	99.39
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.38
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.38
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.37
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.37
PRK10091	382	MFS transport protein AraJ; Provisional	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.36
KOG2563|consensus	480		99.35
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.35
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.32
TIGR00895	398	2A0115 benzoate transport.	99.31
KOG3764|consensus	464		99.31
TIGR00898	505	2A0119 cation transport protein.	99.3
PRK10504	471	putative transporter; Provisional	99.3
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.29
KOG2615|consensus	451		99.29
KOG3762|consensus	618		99.29
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.29
PRK11043	401	putative transporter; Provisional	99.28
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.28
PRK12307	426	putative sialic acid transporter; Provisional	99.28
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.28
PRK03699	394	putative transporter; Provisional	99.27
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.27
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.26
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.25
PRK09705	393	cynX putative cyanate transporter; Provisional	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.24
PRK10489	417	enterobactin exporter EntS; Provisional	99.24
COG2211	467	MelB Na+/melibiose symporter and related transport	99.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.23
KOG2325|consensus	488		99.23
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.23
PRK12382	392	putative transporter; Provisional	99.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.22
PLN00028	476	nitrate transmembrane transporter; Provisional	99.22
PRK05122	399	major facilitator superfamily transporter; Provisi	99.22
PRK03633	381	putative MFS family transporter protein; Provision	99.21
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.21
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PRK09874	408	drug efflux system protein MdtG; Provisional	99.2
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.2
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.19
PRK11462	460	putative transporter; Provisional	99.19
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.19
PRK15011	393	sugar efflux transporter B; Provisional	99.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
PRK10642	490	proline/glycine betaine transporter; Provisional	99.18
KOG1330|consensus	493		99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.17
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.17
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.16
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.15
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.14
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.11
KOG0255|consensus	521		99.11
PRK09528	420	lacY galactoside permease; Reviewed	99.1
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.09
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.08
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.07
PRK09952	438	shikimate transporter; Provisional	99.07
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.06
KOG2532|consensus	466		99.04
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.03
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.03
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.03
PRK11902	402	ampG muropeptide transporter; Reviewed	99.02
KOG0254|consensus	513		99.0
PRK15075	434	citrate-proton symporter; Provisional	99.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.99
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.98
TIGR00901	356	2A0125 AmpG-related permease.	98.97
PRK10133	438	L-fucose transporter; Provisional	98.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.95
TIGR00805	633	oat sodium-independent organic anion transporter.	98.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.93
KOG2816|consensus	463		98.91
PTZ00207	591	hypothetical protein; Provisional	98.86
PRK11010	491	ampG muropeptide transporter; Validated	98.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.81
KOG0569|consensus	485		98.81
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.71
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.65
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.64
KOG2533|consensus	495		98.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.6
PF12832	77	MFS_1_like: MFS_1 like family	98.57
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.56
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.55
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.55
KOG2504|consensus	509		98.49
PF13347	428	MFS_2: MFS/sugar transport protein	98.49
KOG0252|consensus	538		98.47
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.41
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.35
KOG2816|consensus	463		98.35
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.32
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.27
PRK09848	448	glucuronide transporter; Provisional	98.27
KOG3626|consensus	735		98.25
PRK10429	473	melibiose:sodium symporter; Provisional	98.17
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.17
PRK09669	444	putative symporter YagG; Provisional	98.17
KOG0253|consensus	528		98.1
PRK11462	460	putative transporter; Provisional	98.07
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.06
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.04
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.02
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.96
KOG0637|consensus	498		97.95
COG2211	467	MelB Na+/melibiose symporter and related transport	97.94
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.93
KOG4332|consensus	454		97.9
COG0477	338	ProP Permeases of the major facilitator superfamil	97.88
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.8
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.65
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.61
KOG3098|consensus	461		97.43
KOG4686|consensus	459		97.36
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.31
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.3
COG0477	338	ProP Permeases of the major facilitator superfamil	97.26
KOG3762|consensus	618		97.22
KOG2325|consensus	488		97.04
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.76
KOG2563|consensus	480		96.76
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.58
PF12832	77	MFS_1_like: MFS_1 like family	96.19
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.15
KOG3574|consensus	510		96.15
KOG3098|consensus	461		95.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.63
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.5
PRK03612	521	spermidine synthase; Provisional	95.08
KOG3097|consensus	390		94.22
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.01
KOG1479|consensus	406		93.88
KOG3626|consensus	735		93.87
KOG1237|consensus	571		93.72
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.36
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	89.98
KOG3810|consensus	433		89.7
PRK03612	521	spermidine synthase; Provisional	89.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	87.02
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.75
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.92
KOG1237|consensus	571		82.97

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=4.7e-30  Score=236.60  Aligned_cols=301  Identities=28%  Similarity=0.441  Sum_probs=238.0

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccch
Q psy10938         13 FENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR   92 (314)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr   92 (314)
                      .++..++.+.++++|.++++++++.+..+++...+++++|.+.+++|++..+.+++.+++.++.+++++++|+++||+||
T Consensus       152 ~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR  231 (742)
T TIGR01299       152 YELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR  231 (742)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34455667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C--------------------------
Q psy10938         93 KITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR--------------P--------------------------  132 (314)
Q Consensus        93 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P--------------------------  132 (314)
                      |+++++++++.+++.++++++++++.++++|++.|++.+              |                          
T Consensus       232 R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la  311 (742)
T TIGR01299       232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA  311 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988              1                          


Q ss_pred             ------------------------------------------CC--------CCCcc----------------c--chh-
Q psy10938        133 ------------------------------------------LI--------PGHPG----------------K--VAS-  143 (314)
Q Consensus       133 ------------------------------------------l~--------~~~~~----------------~--~~~-  143 (314)
                                                                ++        +.+.+                .  ... 
T Consensus       312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~  391 (742)
T TIGR01299       312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV  391 (742)
T ss_pred             HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHH
Confidence                                                      00        00000                0  000 


Q ss_pred             --hhh--h---h----c-CCcCCC-------------------c----Ccc-----------------------------
Q psy10938        144 --VCD--V---S----A-LQPADN-------------------S----TVA-----------------------------  159 (314)
Q Consensus       144 --~~~--~---~----~-~~~~~~-------------------~----~~~-----------------------------  159 (314)
                        ..+  .   .    + ......                   .    .+.                             
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~  471 (742)
T TIGR01299       392 FSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDM  471 (742)
T ss_pred             HHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000  0   0    0 000000                   0    000                             


Q ss_pred             -ccc------------------------------------------CC---------C----------------------
Q psy10938        160 -TCS------------------------------------------GE---------V----------------------  165 (314)
Q Consensus       160 -~~~------------------------------------------~~---------~----------------------  165 (314)
                       ...                                          +.         +                      
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  551 (742)
T TIGR01299       472 IKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTF  551 (742)
T ss_pred             HHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccch
Confidence             000                                          00         0                      


Q ss_pred             ------------------------------------------ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHH
Q psy10938        166 ------------------------------------------NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAG  203 (314)
Q Consensus       166 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  203 (314)
                                                                .........+..++.+++.+++++++||+|||+++..+
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~  631 (742)
T TIGR01299       552 IDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGS  631 (742)
T ss_pred             hhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                                                      00123345566788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        204 LVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .++.+++.+++.+.++....++..++.+++.++.++....+++|++|++.|++++|+.+...++|++++|++.|.+.+..
T Consensus       632 ~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~  711 (742)
T TIGR01299       632 MVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT  711 (742)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998888887776666666667777777888889999999999999999999999999999999999999988876


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q psy10938        284 CLILICTLAAMLLIAGVFSMFLPATGKKEL  313 (314)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (314)
                      ...++++.+++.++++++.+++|||+++.+
T Consensus       712 ~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       712 KAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            567888888888888888888899998875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.97  E-value=3.4e-29  Score=204.93  Aligned_cols=303  Identities=22%  Similarity=0.371  Sum_probs=247.8

Q ss_pred             cccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc
Q psy10938         10 DATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT   89 (314)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr   89 (314)
                      +...+++++..+++++||........+++.+.+.....+.+.|...+.+|.+..|..++....+.+..+++..+|.++|+
T Consensus        60 ~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~  139 (528)
T KOG0253|consen   60 SFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT  139 (528)
T ss_pred             eeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh
Confidence            33456677788899999999999999999888888888889999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCC-------------------------------------
Q psy10938         90 QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRP-------------------------------------  132 (314)
Q Consensus        90 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~P-------------------------------------  132 (314)
                      +|||+.+.......++...+.+.++|+..+.+.|.+.|+|.||                                     
T Consensus       140 ~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~l  219 (528)
T KOG0253|consen  140 IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALL  219 (528)
T ss_pred             hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999991                                     


Q ss_pred             ---------------------------------------CC-------------------------------CCCcccch
Q psy10938        133 ---------------------------------------LI-------------------------------PGHPGKVA  142 (314)
Q Consensus       133 ---------------------------------------l~-------------------------------~~~~~~~~  142 (314)
                                                             ++                               .+.+++..
T Consensus       220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~  299 (528)
T KOG0253|consen  220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES  299 (528)
T ss_pred             HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence                                                   00                               00000000


Q ss_pred             hhhhhhcC-CcCCCc------Ccc-----------------------------------------------cc---cCCC
Q psy10938        143 SVCDVSAL-QPADNS------TVA-----------------------------------------------TC---SGEV  165 (314)
Q Consensus       143 ~~~~~~~~-~~~~~~------~~~-----------------------------------------------~~---~~~~  165 (314)
                      ...+.... .++...      .+.                                               ++   -.++
T Consensus       300 ~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s  379 (528)
T KOG0253|consen  300 DLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS  379 (528)
T ss_pred             chhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence            00000000 000000      000                                               00   1234


Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      ...-+.-.....+..++|.++.++++||+|||+.+..+.++.+++.+++....+........+..-++..+.+.+.+.|.
T Consensus       380 ~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYt  459 (528)
T KOG0253|consen  380 VAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYT  459 (528)
T ss_pred             chhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEec
Confidence            44555667788899999999999999999999999999999999999998888777777888888899999999999999


Q ss_pred             cccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc-cCCCCCC
Q psy10938        246 VDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLP-ATGKKEL  313 (314)
Q Consensus       246 ~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  313 (314)
                      +|++|+..|+++.|.+...+++|+++.|++. ...+..-+.+..+.+.++++++++..++| |||+|.+
T Consensus       460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             CcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            9999999999999999999999999999998 55555557888899999999999888875 8998875

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=1.1e-27  Score=211.41  Aligned_cols=283  Identities=19%  Similarity=0.227  Sum_probs=218.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      .+++|.++.+.+...+.++++....++..|.+.+|+|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            45788888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------
Q psy10938        103 DGLCGIASSVAQYYGVFLALRFINGFASR--------------P------------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------  132 (314)
                      ..++.+++.+++|++.+++.|++.|++.+              |                                    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  169 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR  169 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            99999999999999999999999999887              1                                    


Q ss_pred             --------------------CCCCCcccch-----hh----hhhhcCCcCCCcCcc----------------------cc
Q psy10938        133 --------------------LIPGHPGKVA-----SV----CDVSALQPADNSTVA----------------------TC  161 (314)
Q Consensus       133 --------------------l~~~~~~~~~-----~~----~~~~~~~~~~~~~~~----------------------~~  161 (314)
                                          +++..++.++     +.    .+..+..+.+.....                      ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  249 (406)
T PRK11551        170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG  249 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                1111110000     00    000110000000000                      23


Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      .+.+..+.+.......++.+++.++.|++.||+|+|+.+..+.+...++.+.+...++.+......++.+++.....+..
T Consensus       250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  329 (406)
T PRK11551        250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL  329 (406)
T ss_pred             CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence            45666777888888889999999999999999999998887777666666666666666555555666676677777888


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHhc
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLI--LICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~  305 (314)
                      +++..|.+|+++|+++.|+.+...++|..++|.+.|.+.|+.+..  .++....+.+++.++.+.+
T Consensus       330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999986532  3334444444444444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.1e-26  Score=196.77  Aligned_cols=282  Identities=21%  Similarity=0.225  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      +..+..++.+.++.|..+.....+..++|++.+|+|+|..+.|++.|.|.+++++++++...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34466777788888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C-------------------------------------
Q psy10938        104 GLCGIASSVAQYYGVFLALRFINGFASR--------------P-------------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P-------------------------------------  132 (314)
                      .++.+++++++||+.++++|++.|+..|              |                                     
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence            9999999999999999999999999999              1                                     


Q ss_pred             -------------------CC-CCCcccc-hhhhhhhcCCcCCCcCcc-----------------------cccCCCChh
Q psy10938        133 -------------------LI-PGHPGKV-ASVCDVSALQPADNSTVA-----------------------TCSGEVNPE  168 (314)
Q Consensus       133 -------------------l~-~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~  168 (314)
                                         ++ ++.+++. .+.++..+..++......                       +..+.+...
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~  248 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA  248 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH
Confidence                               24 2222221 222222222111111000                       456778889


Q ss_pred             HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhchhheeeecc
Q psy10938        169 VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS-TQNLILSCIFEALTGCCISVVYCIMVD  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (314)
                      ..+....++++.++|..++|++.|| +.|+.+.....+..+..+.+.+..+. +......++.++.............++
T Consensus       249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~  327 (394)
T COG2814         249 VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR  327 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc
Confidence            9999999999999999999999999 88888888877777777777666544 344444444555555555555566666


Q ss_pred             cccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Q psy10938        248 LFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       248 ~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      .. ++.+..+.+++....++|..+|..++|.+.|+.+ ....+..+.+.+++.++.....+
T Consensus       328 ~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         328 LA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             cC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33 4778999999999999999999999999999988 44556666666666665554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=4.1e-27  Score=211.08  Aligned_cols=292  Identities=13%  Similarity=0.099  Sum_probs=205.0

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchh
Q psy10938         14 ENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK   93 (314)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr   93 (314)
                      ++..++..+.+..+.++..+++.++..+.++..+++..|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r   94 (467)
T PRK09556         15 PLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK   94 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc
Confidence            33333444566677888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHh-----hhHHHHHHHHHHHhhcccC---C---------------------------------
Q psy10938         94 ITLIGALLVDGLCGIASSV-----AQYYGVFLALRFINGFASR---P---------------------------------  132 (314)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~---P---------------------------------  132 (314)
                      +++..+.+++++..+..++     ++|++.+++.|+++|++.+   |                                 
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~  174 (467)
T PRK09556         95 QFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGA  174 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHH
Confidence            9999888888877766655     5899999999999999877   1                                 


Q ss_pred             ------------------------------------CCCCCcccch-----h-hh-----hh-hc-CCcCC--C------
Q psy10938        133 ------------------------------------LIPGHPGKVA-----S-VC-----DV-SA-LQPAD--N------  155 (314)
Q Consensus       133 ------------------------------------l~~~~~~~~~-----~-~~-----~~-~~-~~~~~--~------  155 (314)
                                                          +.+++|++..     + ..     +. .+ .++..  +      
T Consensus       175 ~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (467)
T PRK09556        175 GGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYV  254 (467)
T ss_pred             HHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHH
Confidence                                                0111111100     0 00     00 00 00000  0      


Q ss_pred             -cCcc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHH
Q psy10938        156 -STVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLS  207 (314)
Q Consensus       156 -~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  207 (314)
                       +++.                           +..+.+..+++.......++.+++.++.|+++||++||+.......+.
T Consensus       255 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~  334 (467)
T PRK09556        255 LKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALA  334 (467)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence             0000                           334666777778888888899999999999999999887765544333


Q ss_pred             HHHHHHH--HHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHh---
Q psy10938        208 SGVAMAL--YYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLID---  281 (314)
Q Consensus       208 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~---  281 (314)
                      .+.....  ...++.+......++.+++.............|.+|++.++++.|+.+..+++ |.+++|.+.|.+.|   
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~  414 (467)
T PRK09556        335 LIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTK  414 (467)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccc
Confidence            3332222  22223333334444444333333333335666999999999999999999996 77999999999999   


Q ss_pred             ---------hhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        282 ---------GHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       282 ---------~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                               ..+ ...|++.+++.+++.+..+++
T Consensus       415 ~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        415 NGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                     344 455666666666665554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=1.6e-26  Score=202.79  Aligned_cols=279  Identities=19%  Similarity=0.085  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  105 (314)
                      +|..++.+.++.+..........+++|.+.+|+|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+..+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            34444444444444444444556778999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC--------------C---------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR--------------P---------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P---------------------------------------  132 (314)
                      +.+.+.+++|++++++.|+++|++.+              |                                       
T Consensus        87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  166 (390)
T PRK03545         87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF  166 (390)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence            99999999999999999999999877              1                                       


Q ss_pred             -----------------CCCCCcccchhhh---hhhcCCcCCCcCcc--------------------cccCCCChhHHHH
Q psy10938        133 -----------------LIPGHPGKVASVC---DVSALQPADNSTVA--------------------TCSGEVNPEVFSH  172 (314)
Q Consensus       133 -----------------l~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  172 (314)
                                       +++.+++++...+   +..+++........                    +..+.+....+..
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~  246 (390)
T PRK03545        167 LAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLL  246 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence                             1221111111111   11111110000000                    2345666777888


Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccch
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN  252 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  252 (314)
                      .....++.++++++.+++.||+++|....................++.+......++.+++.....+.......|..| +
T Consensus       247 ~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~  325 (390)
T PRK03545        247 LLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-D  325 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-C
Confidence            888889999999999999999998865444333333322333344444555555556666665555666677778766 6


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       253 ~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      .|+++.|+.+...++|..+||.+.|.+.|+.+ ...++..+.+.+++.+.....
T Consensus       326 ~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        326 ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999988 566767777777766655543

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=1.6e-26  Score=203.03  Aligned_cols=282  Identities=11%  Similarity=0.039  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHH
Q psy10938         25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (314)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  104 (314)
                      +|++..+..++.++..+.+....++.+|++.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45667777788888999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhhhHHHHHHHHHHHhhcccC--------------C--------------------------------------
Q psy10938        105 LCGIASSVAQYYGVFLALRFINGFASR--------------P--------------------------------------  132 (314)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P--------------------------------------  132 (314)
                      ++.++..++++++.+++.|+++|++.+              |                                      
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            999999999999999999999999877              1                                      


Q ss_pred             ----------------CCCCCcccchhhhhhhcCCcCCCcCcc---------------------------cccCCCChhH
Q psy10938        133 ----------------LIPGHPGKVASVCDVSALQPADNSTVA---------------------------TCSGEVNPEV  169 (314)
Q Consensus       133 ----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~  169 (314)
                                      +..+.|+.+++..+..+...+....+.                           +..+.+..+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~  243 (394)
T PRK03699        164 VYACIGLVYVAIFILTLFSEFPALGKHAPKADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDA  243 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccccccCccccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh
Confidence                            011111100000000000000000110                           3346667777


Q ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccc
Q psy10938        170 FSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLF  249 (314)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      +.......++..+++++.+++.||+++|+.+.....+..+...++...++.+......++.+++.+..++...+...|..
T Consensus       244 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  323 (394)
T PRK03699        244 GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT  323 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888899999999999999999999888777776666666555555555555566677777777777777777776


Q ss_pred             cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Q psy10938        250 PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       250 p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      |. .+++..+......++|..++|.+.|++.|..+ ...++..+++.+++.+.+...++
T Consensus       324 ~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        324 KV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             cC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            64 45778899999999999999999999999877 55666667776666665555543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.95  E-value=1.5e-26  Score=202.95  Aligned_cols=282  Identities=13%  Similarity=0.077  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q psy10938         27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (314)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  106 (314)
                      |.....++.+.+..... ...++++|.+++|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            44444444444433332 56788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHHhhcccC--------------C----------------------------------------
Q psy10938        107 GIASSVAQYYGVFLALRFINGFASR--------------P----------------------------------------  132 (314)
Q Consensus       107 ~~~~~~~~~~~~l~~~r~l~G~~~~--------------P----------------------------------------  132 (314)
                      .+.+++++|++.++++|+++|++.+              |                                        
T Consensus        88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~  167 (393)
T PRK09705         88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA  167 (393)
T ss_pred             HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999              1                                        


Q ss_pred             ---------------CCCCCcccchhhhhhhcCCcCCCcCcc-------------------------cccCCCChhHHHH
Q psy10938        133 ---------------LIPGHPGKVASVCDVSALQPADNSTVA-------------------------TCSGEVNPEVFSH  172 (314)
Q Consensus       133 ---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~  172 (314)
                                     ..+++++++++.+.  +..+..+....                         .+.+.+..+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~  245 (393)
T PRK09705        168 WWALPAVVALFAWWWQSAREVASSHKTTT--TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSL  245 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccccCCCc--CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHH
Confidence                           01111111100000  00000000000                         3356677778888


Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc-c
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP-T  251 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  251 (314)
                      .....++.++++++.+++.||++||+....+..+..++..++...+..... ...++.+++.+...+.......+..+ +
T Consensus       246 ~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~  324 (393)
T PRK09705        246 LALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFPLCLLLALDHSVQP  324 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHHHHHHHHHhhcCCH
Confidence            899999999999999999999999998888877777666655433332222 22334555666666766656666664 6


Q ss_pred             hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH-hcccCCCCC
Q psy10938        252 NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSM-FLPATGKKE  312 (314)
Q Consensus       252 ~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  312 (314)
                      +++++..|+.+...++++.++|.+.|++.|..|  ...+.+.+.+.++..++.. +.||+++|.
T Consensus       325 ~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        325 AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            789999999999999999999999999999976  4455555555555555433 448877654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.1e-26  Score=194.59  Aligned_cols=282  Identities=16%  Similarity=0.198  Sum_probs=225.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHH
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  101 (314)
                      .+++|+.++...++++...++.+.+++.+.|.+.+|.++|.+|.|++.|.+.++|.++..+.|.++||.++|+.+..+++
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhHHHHHHHHHHHhhcccC---C----------------------------------------------
Q psy10938        102 VDGLCGIASSVAQYYGVFLALRFINGFASR---P----------------------------------------------  132 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~---P----------------------------------------------  132 (314)
                      +.++..++++++++.+.+.+.-++.|..+|   |                                              
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999888   2                                              


Q ss_pred             ----------------------CCCCCcccc--hhh-------hhhhcCCcCCC-cCcc---------------------
Q psy10938        133 ----------------------LIPGHPGKV--ASV-------CDVSALQPADN-STVA---------------------  159 (314)
Q Consensus       133 ----------------------l~~~~~~~~--~~~-------~~~~~~~~~~~-~~~~---------------------  159 (314)
                                            +-+++|++.  ++.       .+..++.++.+ .+..                     
T Consensus       183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v  262 (448)
T COG2271         183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANV  262 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence                                  112222211  011       11101111111 0000                     


Q ss_pred             ------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hhHHHH-HHHHHHHHHHHHHHHHhc
Q psy10938        160 ------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GAKWFL-VAGLVLSSGVAMALYYVQ  218 (314)
Q Consensus       160 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~  218 (314)
                                        +.++.+..++....+.+-.++++|++++|+++||+  |||... .++.+...++.+.+...+
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~  342 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP  342 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence                              67788999999999999999999999999999997  566554 445555566666666666


Q ss_pred             ch--hHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhh-HHHHHHHHHH
Q psy10938        219 TS--TQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLIDGHC-LILICTLAAM  294 (314)
Q Consensus       219 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~~~~-~~~~~~~~~~  294 (314)
                      +.  +...++.++.|++..+..-..-....|..|.+..|++.|+...++++ |.+.+....|++.|.+| ...|.++.+.
T Consensus       343 ~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~  422 (448)
T COG2271         343 NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIA  422 (448)
T ss_pred             CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHH
Confidence            44  56666777788888777777778899999999999999999999998 99999999999999977 4556666555


Q ss_pred             HHHHHHHHH
Q psy10938        295 LLIAGVFSM  303 (314)
Q Consensus       295 ~~~~~~~~~  303 (314)
                      ++++.++.+
T Consensus       423 a~l~~lll~  431 (448)
T COG2271         423 ALLAILLLL  431 (448)
T ss_pred             HHHHHHHHH
Confidence            555555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=4.3e-26  Score=200.71  Aligned_cols=284  Identities=15%  Similarity=0.113  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q psy10938         28 ILVIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  106 (314)
                      +.+..+.+..++...+..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34455666777778888888888886 57889999999999999999999999999999999999999999999988887


Q ss_pred             hHHHHhh--------hHHHHHHHHHHHhhcccC---C-------------------------------------------
Q psy10938        107 GIASSVA--------QYYGVFLALRFINGFASR---P-------------------------------------------  132 (314)
Q Consensus       107 ~~~~~~~--------~~~~~l~~~r~l~G~~~~---P-------------------------------------------  132 (314)
                      .+.+.++        .+++++++.|+++|++.+   |                                           
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            6665543        257789999999999988   1                                           


Q ss_pred             --------------------CC--CC-Ccccc--hhhhhhhcCCcCCCcCc---c--------------cccCCCChhHH
Q psy10938        133 --------------------LI--PG-HPGKV--ASVCDVSALQPADNSTV---A--------------TCSGEVNPEVF  170 (314)
Q Consensus       133 --------------------l~--~~-~~~~~--~~~~~~~~~~~~~~~~~---~--------------~~~~~~~~~~~  170 (314)
                                          ..  ++ +++++  .+..+..+.........   .              ...+.  .+.+
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  252 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLARPRPAVPPVKGERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYAARGW--DGAA  252 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--ccch
Confidence                                01  11 00000  00111111000000000   0              11122  2334


Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      .......++.+++.+..+++.||+++|+.+..+..+..++.+.....++.+......++.+++.+..++.......|..|
T Consensus       253 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  332 (399)
T PRK05122        253 LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVP  332 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            45566778888899999999999999998888888877777777666666666666667777777777777777788899


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPATGKKEL  313 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (314)
                      +++|+++.|+.+...++|..++|.+.|.+.|..+ ...++..+.+.+++.+...+++++++|+.
T Consensus       333 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (399)
T PRK05122        333 PQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAV  396 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence            9999999999999999999999999999999877 55666677777777666666666666554

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=1.3e-26  Score=210.15  Aligned_cols=265  Identities=22%  Similarity=0.390  Sum_probs=202.5

Q ss_pred             hhccccccccccc---cchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q psy10938         49 FVLPSAQCDFGMT---SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (314)
Q Consensus        49 ~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  125 (314)
                      +..|.+.+|||++   +.+.++..+++.++..+++++.|+++||+|||+++..+.++..++.++.++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678899999999   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccC--------------C----------------------------------------------------CCCC---
Q psy10938        126 NGFASR--------------P----------------------------------------------------LIPG---  136 (314)
Q Consensus       126 ~G~~~~--------------P----------------------------------------------------l~~~---  136 (314)
                      .|++.+              |                                                    +++.   
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~  269 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW  269 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            999998              1                                                    1111   


Q ss_pred             -----Ccccc-hhhhh---------------h--hcC--CcCC-Cc------Ccc-----------------------cc
Q psy10938        137 -----HPGKV-ASVCD---------------V--SAL--QPAD-NS------TVA-----------------------TC  161 (314)
Q Consensus       137 -----~~~~~-~~~~~---------------~--~~~--~~~~-~~------~~~-----------------------~~  161 (314)
                           +.++. +...+               .  .+.  .+.+ ..      .+.                       ..
T Consensus       270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (505)
T TIGR00898       270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD  349 (505)
T ss_pred             HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 00000 00000               0  000  0000 00      000                       00


Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhhhhch
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS--TQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  239 (314)
                      ......+........++..+++.++.+++.||+|||+.+..+.++.+++++++.+.++.  +......++.+++....++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (505)
T TIGR00898       350 LGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ  429 (505)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            11112234455566677888899999999999999999999998888888877776654  3444455556666777788


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGKKELD  314 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  314 (314)
                      ..+.+.+|.+|++.|+++.|+.+....+|++++|++.+ +.+.....++.+++++.+++.+..+++||+++++++
T Consensus       430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~  503 (505)
T TIGR00898       430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLP  503 (505)
T ss_pred             HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCC
Confidence            88899999999999999999999999999999999998 555444777888888888888888888999998764

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=4.8e-27  Score=204.72  Aligned_cols=265  Identities=12%  Similarity=0.066  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  113 (314)
                      +............+++..|.+.+|+|+|+.+.|++.+++.+++.+++++.|+++||+|||+++..+..+.+++.+.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890         9 TVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            33333344446677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcccC--------------C-----------------------------------------------
Q psy10938        114 QYYGVFLALRFINGFASR--------------P-----------------------------------------------  132 (314)
Q Consensus       114 ~~~~~l~~~r~l~G~~~~--------------P-----------------------------------------------  132 (314)
                      +|++.+++.|++.|++.+              |                                               
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  168 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLL  168 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999887              1                                               


Q ss_pred             --------CCCCCcccch---h-------hhhhhcCCcCCCcCcc-------------------cccCCCChhHHHHHHH
Q psy10938        133 --------LIPGHPGKVA---S-------VCDVSALQPADNSTVA-------------------TCSGEVNPEVFSHTLI  175 (314)
Q Consensus       133 --------l~~~~~~~~~---~-------~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  175 (314)
                              ++++++++.+   +       ..+..+++........                   +..+.+..+.+.....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (377)
T TIGR00890       169 VIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSI  248 (377)
T ss_pred             HHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                    1111111000   0       0000000000000000                   2234455566777888


Q ss_pred             HHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHhhhhhchhheeeecccccchh
Q psy10938        176 IGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQ--NLILSCIFEALTGCCISVVYCIMVDLFPTNL  253 (314)
Q Consensus       176 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  253 (314)
                      ..+...+++++.+++.||++||+.+..+..+..++.+...+.++...  ......+.+++.+...+....+..|.+|+++
T Consensus       249 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  328 (377)
T TIGR00890       249 SSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN  328 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh
Confidence            88999999999999999999999988888888887777666553322  2233444555666666667778999999999


Q ss_pred             hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy10938        254 RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIA  298 (314)
Q Consensus       254 r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~  298 (314)
                      |+++.|+.+....+|..++|.+.|.+.|..+ ...+.+.+++.+++
T Consensus       329 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       329 SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999877 44555555554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=199.41  Aligned_cols=263  Identities=18%  Similarity=0.229  Sum_probs=196.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      ++++++.+..+.+.++.++++.....+..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45677778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------
Q psy10938        103 DGLCGIASSVAQYYGVFLALRFINGFASR--------------P------------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------  132 (314)
                      .+++.++++++++++.++++|+++|++.+              |                                    
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            99999999999999999999999999877              1                                    


Q ss_pred             ---------------CCCCCcccch----hh------------------hhhhcCCcCCCcCcc----------------
Q psy10938        133 ---------------LIPGHPGKVA----SV------------------CDVSALQPADNSTVA----------------  159 (314)
Q Consensus       133 ---------------l~~~~~~~~~----~~------------------~~~~~~~~~~~~~~~----------------  159 (314)
                                     +....++..+    +.                  .+.++.+........                
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG  252 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0110111100    00                  000000000000000                


Q ss_pred             ------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-
Q psy10938        160 ------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEA-  232 (314)
Q Consensus       160 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (314)
                            ...+.+....+.......++.+++.++.+++.||++||+.+..+.++..+..+.....++........++.+. 
T Consensus       253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (426)
T PRK12307        253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM  332 (426)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence                  2234455556666777888899999999999999999999888877776665554433322222222222222 


Q ss_pred             -hhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH
Q psy10938        233 -LTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL  285 (314)
Q Consensus       233 -~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~  285 (314)
                       ...+..+..+.++.|.+|++.|+++.|+.+...++++.++|.+.|.+.|..+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence             22233445567789999999999999999999999999999999999998873

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=1.2e-25  Score=198.10  Aligned_cols=264  Identities=16%  Similarity=0.197  Sum_probs=203.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHH
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  101 (314)
                      .++++|+.+..+++.++.++++....+++.|.+++++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C-----------------------------------
Q psy10938        102 VDGLCGIASSVAQYYGVFLALRFINGFASR--------------P-----------------------------------  132 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P-----------------------------------  132 (314)
                      +..++.+++.++++++.+++.|++.|++.+              |                                   
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999987              1                                   


Q ss_pred             ----------------------CCCCCc-c-cch---h----hhhhhcCCcC-CC--------------cCc--c-----
Q psy10938        133 ----------------------LIPGHP-G-KVA---S----VCDVSALQPA-DN--------------STV--A-----  159 (314)
Q Consensus       133 ----------------------l~~~~~-~-~~~---~----~~~~~~~~~~-~~--------------~~~--~-----  159 (314)
                                            ++++++ + +++   .    .++..+.++. +.              ...  .     
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVV  245 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence                                  111110 0 000   0    0000100000 00              000  0     


Q ss_pred             ---------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hh
Q psy10938        160 ---------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY-YV  217 (314)
Q Consensus       160 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~  217 (314)
                                           ...+.+..+.+.......++.+++.++.+++.||+|||+.+..+.....+...... ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  325 (405)
T TIGR00891       246 LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG  325 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC
Confidence                                 12355666777778888899999999999999999999988877766544333322 22


Q ss_pred             cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH
Q psy10938        218 QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL  285 (314)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~  285 (314)
                      ++.+......++.+++.....+..+.+..|.+|++.|+++.|+.+...++|..++|++.|.+.|+.|.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~  393 (405)
T TIGR00891       326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE  393 (405)
T ss_pred             CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333333334455556666777788899999999999999999999999999999999999999873

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.94  E-value=3.7e-25  Score=193.51  Aligned_cols=273  Identities=14%  Similarity=0.094  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      +..+.++.++...+.....+.+|.+.+++|.|+.++|++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555677778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHhhcccC---C------------------------------------------------------
Q psy10938        110 SSVAQYYGVFLALRFINGFASR---P------------------------------------------------------  132 (314)
Q Consensus       110 ~~~~~~~~~l~~~r~l~G~~~~---P------------------------------------------------------  132 (314)
                      +++++|++.++++|+++|++.+   |                                                      
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  167 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL  167 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            9999999999999999999887   1                                                      


Q ss_pred             ------------CCCCCcccc--hhhhhhhcCCcCCCcCc-c------------------cccCCCChhHHHHHHHHHhh
Q psy10938        133 ------------LIPGHPGKV--ASVCDVSALQPADNSTV-A------------------TCSGEVNPEVFSHTLIIGLA  179 (314)
Q Consensus       133 ------------l~~~~~~~~--~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~  179 (314)
                                  .++++++++  .+..+..+++....... .                  ++.+.+....+.......+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~  247 (381)
T PRK03633        168 VLAAILPLLFTRILNQQAENHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSA  247 (381)
T ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                        011100000  01111111111000000 0                  23455566677777888889


Q ss_pred             hhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHH
Q psy10938        180 CIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAA  259 (314)
Q Consensus       180 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g  259 (314)
                      .+++++..+++.||+++|+.+..+.....++.+...  +. ........+.+.+.....|...+...|..|+++++...+
T Consensus       248 ~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~  324 (381)
T PRK03633        248 GILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQ  324 (381)
T ss_pred             HHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHH
Confidence            999999999999999999988877777666555443  21 222233344555555667888888889998888888888


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        260 LSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       260 ~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ..+...++|..++|.+.|.+.|+.+ ...+.+.+.+.++..+..+..
T Consensus       325 ~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        325 ALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            8888889999999999999999887 556666666666555444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=1.2e-24  Score=196.09  Aligned_cols=286  Identities=16%  Similarity=0.178  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccch-hhH-----HhHhhHHHHHHhhhhhhhcccccchhHHHHHHH
Q psy10938         27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-KGW-----LNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL  100 (314)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  100 (314)
                      ++.+...+++.+++++|...++...|.+.++++.+.++ .++     ..++.++++.++++++|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45667778899999999999999999999999754432 222     257888999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhhHHHH--------HHHHHHHhhcccC--------------C--------------------------
Q psy10938        101 LVDGLCGIASSVAQYYGV--------FLALRFINGFASR--------------P--------------------------  132 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~--------------P--------------------------  132 (314)
                      ++++++++++++++|+++        ++++|+++|++.|              |                          
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        8899999999988              1                          


Q ss_pred             ---------------------------------C---CCCCcccchhhhhhh---c----CCcCCC------cCcc----
Q psy10938        133 ---------------------------------L---IPGHPGKVASVCDVS---A----LQPADN------STVA----  159 (314)
Q Consensus       133 ---------------------------------l---~~~~~~~~~~~~~~~---~----~~~~~~------~~~~----  159 (314)
                                                       +   .++.++......+..   +    +.++..      ....    
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLT  254 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHH
Confidence                                             0   011111000000000   0    000000      0000    


Q ss_pred             ------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHH
Q psy10938        160 ------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVA-MAL  214 (314)
Q Consensus       160 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~  214 (314)
                                              ...+.+............++..++.++.|+++||+|||+.+..+.....+.. .++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        255 CIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence                                    1234444555556666778888899999999999999998877665433322 222


Q ss_pred             HH--hcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHH
Q psy10938        215 YY--VQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICT  290 (314)
Q Consensus       215 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~  290 (314)
                      ..  .++........++.+++.+...+....+.+|.+|++.|+++.|+.+....+++.++|++.|++.+..+  ..+++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~  414 (490)
T PRK10642        335 ILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY  414 (490)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            22  22223333334444555555556667778899999999999998777778888999999999988654  444555


Q ss_pred             HHHHHHHHHHHHHhcccCCCCC
Q psy10938        291 LAAMLLIAGVFSMFLPATGKKE  312 (314)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~  312 (314)
                      ..+..+++.+..+++||++++.
T Consensus       415 ~~~~~~i~~~~~~~~pes~~~~  436 (490)
T PRK10642        415 LMVVAVIGLITGVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHhccccCCC
Confidence            5556666666666678876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=7.5e-25  Score=194.66  Aligned_cols=287  Identities=12%  Similarity=0.058  Sum_probs=198.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      +++++.++....+.++..+++...++...|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            34566677777788888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------
Q psy10938        103 DGLCGIASSVAQYYGVFLALRFINGFASR--------------P------------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------  132 (314)
                      .+++.++.++++|++.+++.|++.|++.+              |                                    
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            99999999999999999999999988776              1                                    


Q ss_pred             --------------------CCCCCcccc---------h---hh-hhhhcCC-cCCC-------cCcc------------
Q psy10938        133 --------------------LIPGHPGKV---------A---SV-CDVSALQ-PADN-------STVA------------  159 (314)
Q Consensus       133 --------------------l~~~~~~~~---------~---~~-~~~~~~~-~~~~-------~~~~------------  159 (314)
                                          +++ +++..         +   +. .+..+.+ +.++       ..+.            
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRD-KPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVY  256 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC-CHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHH
Confidence                                121 11100         0   00 0000000 0000       0000            


Q ss_pred             ---------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHHHHhc--c
Q psy10938        160 ---------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GA-KWFLVAGLVLSSGVAMALYYVQ--T  219 (314)
Q Consensus       160 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~-~~~~~~~~~~~~~~~~~~~~~~--~  219 (314)
                                     +..+.+..+.+.......++..+++++.|++.||+  ++ +...........+....+...+  +
T Consensus       257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK11663        257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS  336 (434)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc
Confidence                           23456667777888888899999999999999998  33 3322222211111221111112  2


Q ss_pred             hhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy10938        220 STQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIA  298 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~  298 (314)
                      ........+..+++.............|.+|++.|+++.|+.+...++|++++|.+.|.+.|+.+ ...+...+++.+++
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            22222222223332222222334567899999999999999999999999999999999999887 55666777776666


Q ss_pred             HHHHHhc-ccCCC
Q psy10938        299 GVFSMFL-PATGK  310 (314)
Q Consensus       299 ~~~~~~~-~~~~~  310 (314)
                      ++..+.. +++++
T Consensus       417 ~~~~~~~~~~~~~  429 (434)
T PRK11663        417 ALLLLPFLNAQAP  429 (434)
T ss_pred             HHHHHHHHhhhch
Confidence            6655543 44443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=6e-25  Score=198.78  Aligned_cols=299  Identities=18%  Similarity=0.263  Sum_probs=206.7

Q ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----ccccchhhHHhHhhHHHHHHhhhhhhhccccc
Q psy10938         16 ALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF-----GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ   90 (314)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~   90 (314)
                      ..|+.+.++++++.+.++.++.+.++++....+.+.|.+.+++     +.++.+.+++.+.+.+++.++++++|+++||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~   83 (502)
T TIGR00887         4 EADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL   83 (502)
T ss_pred             hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3466778889999999999999999999999999888876642     34556779999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHhhhH------HHHHHHHHHHhhcccC--------------C------------------
Q psy10938         91 GRKITLIGALLVDGLCGIASSVAQY------YGVFLALRFINGFASR--------------P------------------  132 (314)
Q Consensus        91 Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~--------------P------------------  132 (314)
                      |||+++..+.++..++.++++++++      ++.++++|+++|++.+              |                  
T Consensus        84 Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887        84 GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999888765      7899999999999999              1                  


Q ss_pred             --------------CCC-------------------C-----------------------Ccccch------h----hh-
Q psy10938        133 --------------LIP-------------------G-----------------------HPGKVA------S----VC-  145 (314)
Q Consensus       133 --------------l~~-------------------~-----------------------~~~~~~------~----~~-  145 (314)
                                    +..                   +                       -||...      +    .. 
T Consensus       164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~  243 (502)
T TIGR00887       164 ILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS  243 (502)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHH
Confidence                          000                   0                       000000      0    00 


Q ss_pred             ---hhhc-----CCcC-------CC-c--C----------cc------------------------------cccCCCCh
Q psy10938        146 ---DVSA-----LQPA-------DN-S--T----------VA------------------------------TCSGEVNP  167 (314)
Q Consensus       146 ---~~~~-----~~~~-------~~-~--~----------~~------------------------------~~~~~~~~  167 (314)
                         +..+     ..++       ++ .  .          ++                              ...+.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~  323 (502)
T TIGR00887       244 DMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP  323 (502)
T ss_pred             HHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC
Confidence               0000     0000       00 0  0          00                              00011110


Q ss_pred             hH------------HHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHH-
Q psy10938        168 EV------------FSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT---STQNLILSCIFE-  231 (314)
Q Consensus       168 ~~------------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-  231 (314)
                      ..            .....+..++.+++.++.+++.||+|||+.+..+..+..+++.++....+   .........+.. 
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  403 (502)
T TIGR00887       324 AATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF  403 (502)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            00            00122233455567788899999999999988888777766655543321   111122222222 


Q ss_pred             HhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh----------h-HHHHHHHHHHHHHHHH
Q psy10938        232 ALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH----------C-LILICTLAAMLLIAGV  300 (314)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~----------~-~~~~~~~~~~~~~~~~  300 (314)
                      ++..+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.|++.|..          + ...+++++++.+++.+
T Consensus       404 ~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       404 FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            2233445667788899999999999999999999999999999999999843          2 3567778877777766


Q ss_pred             HHHhcccCCCCCCC
Q psy10938        301 FSMFLPATGKKELD  314 (314)
Q Consensus       301 ~~~~~~~~~~~~l~  314 (314)
                      ..+++|||++|++|
T Consensus       484 ~~~~lpEt~~~~le  497 (502)
T TIGR00887       484 FTLLIPETKGKSLE  497 (502)
T ss_pred             HheEeccCCCCCHH
Confidence            66666999998753

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=5.7e-25  Score=194.01  Aligned_cols=261  Identities=14%  Similarity=0.143  Sum_probs=190.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      |.+|+.+..+++.++.+++|+.+.+...|.+++|+|+|..+.|++.+.+.+++++++++.|+++||+|||+++..+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            45678888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhHHHHHHHHHHHhhcccC---C------------------------------------------------
Q psy10938        104 GLCGIASSVAQYYGVFLALRFINGFASR---P------------------------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~---P------------------------------------------------  132 (314)
                      +++.+++++++|++++++.|+++|++.+   |                                                
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999998   1                                                


Q ss_pred             ------------------------CCCCCcccc--------hhhhhhh-------cCCc----CCC----------cCcc
Q psy10938        133 ------------------------LIPGHPGKV--------ASVCDVS-------ALQP----ADN----------STVA  159 (314)
Q Consensus       133 ------------------------l~~~~~~~~--------~~~~~~~-------~~~~----~~~----------~~~~  159 (314)
                                              .-++.|++.        +...+..       ++.+    +..          ..+.
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPA  243 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChH
Confidence                                    011111110        0000000       0000    000          0000


Q ss_pred             --------------------------cc--cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHH-HHHHHHHHHHH
Q psy10938        160 --------------------------TC--SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWF-LVAGLVLSSGV  210 (314)
Q Consensus       160 --------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~  210 (314)
                                                ..  .+.+....+.......++.+++.++.|+++||+++|+. .........+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~  323 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG  323 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence                                      12  23455677777888899999999999999999987664 33333344443


Q ss_pred             HHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        211 AMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      ..+.....+.........+..++.....+.......|.+|++.|+++.|+.+...++|++++|.+.|.+.|..+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       324 WLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            33332222222222222222222222334445566788999999999999999999999999999999999875

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=4.8e-24  Score=189.61  Aligned_cols=284  Identities=14%  Similarity=0.155  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc--ccccchhhHHh-----HhhHHHHHHhhhhhhhcccccchhHHH
Q psy10938         25 FHYILVIFGGLLYAYAAISITVLSFVLPS-AQCDF--GMTSSDKGWLN-----AAPMLGMVFGSYFWGCLADTQGRKITL   96 (314)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~l   96 (314)
                      ++++.+...+++.+++++|...++.+.|. +.+++  +.++. .+++.     ++.+++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            44567777888999999999999888774 45555  66665 45553     355677889999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhHHH--------HHHHHHHHhhcccC--------------C----------------------
Q psy10938         97 IGALLVDGLCGIASSVAQYYG--------VFLALRFINGFASR--------------P----------------------  132 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~--------------P----------------------  132 (314)
                      ..+..+++++.+++++++|++        .+++.|+++|++.|              |                      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        58899999999998              1                      


Q ss_pred             -------------------------------------CCCCCcccchh--hh-hhhcCCcCCC------cCcc-------
Q psy10938        133 -------------------------------------LIPGHPGKVAS--VC-DVSALQPADN------STVA-------  159 (314)
Q Consensus       133 -------------------------------------l~~~~~~~~~~--~~-~~~~~~~~~~------~~~~-------  159 (314)
                                                           +.+..+|.++.  .+ +..+.++...      +.+.       
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  257 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIA  257 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHH
Confidence                                                 01101111000  00 0000000000      0000       


Q ss_pred             ---------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--
Q psy10938        160 ---------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY--  216 (314)
Q Consensus       160 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--  216 (314)
                                           +..+.+...........++...++.++.|+++||+|||+.+..+.++..++.+.+..  
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~  337 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL  337 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence                                 122333333333444556667778889999999999999888776665554433322  


Q ss_pred             -hcchh-HHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhh-hhhhhHHHHHHHHHhhh-h--HHHHHH
Q psy10938        217 -VQTST-QNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGR-FGGLTGNLMFGFLIDGH-C--LILICT  290 (314)
Q Consensus       217 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~p~~~g~l~~~~-~--~~~~~~  290 (314)
                       ..+.. ......++.+++.+...+..+++.+|.+|++.|+++.|+.+..+. +++.++|.+.|.+.|.. +  ...+..
T Consensus       338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~  417 (438)
T PRK09952        338 EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIY  417 (438)
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence             11222 222233444556666677788899999999999999999776655 89999999999998854 2  345556


Q ss_pred             HHHHHHHHHHHHHhcccCC
Q psy10938        291 LAAMLLIAGVFSMFLPATG  309 (314)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~  309 (314)
                      .+++.+++.+..+..+|++
T Consensus       418 ~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        418 LLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHccccc
Confidence            6666777666666666654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=8.7e-25  Score=194.19  Aligned_cols=287  Identities=15%  Similarity=0.086  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---cccchhhHH---hHhhHHHHHHhhhhhhhcccccchhHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFG---MTSSDKGWL---NAAPMLGMVFGSYFWGCLADTQGRKITLI   97 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~~---~s~~~~~~~i~~~~~g~l~dr~Grr~~l~   97 (314)
                      +++++.+...+++.+++++|...++...|.+.+|++   .+..+.+..   .+..+++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345556677778899999999999999999999985   455544444   44445555599999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhHHH--------HHHHHHHHhhcccC--------------C-----------------------
Q psy10938         98 GALLVDGLCGIASSVAQYYG--------VFLALRFINGFASR--------------P-----------------------  132 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~--------------P-----------------------  132 (314)
                      .+..+++++++++++++++.        .+++.|+++|++.|              |                       
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988764        58999999999988              1                       


Q ss_pred             ------------------------------------CCCCCcccch----------hhhhhhcCCcCCCcCc------c-
Q psy10938        133 ------------------------------------LIPGHPGKVA----------SVCDVSALQPADNSTV------A-  159 (314)
Q Consensus       133 ------------------------------------l~~~~~~~~~----------~~~~~~~~~~~~~~~~------~-  159 (314)
                                                          +....+|.++          +..+.+++++......      . 
T Consensus       178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  257 (432)
T PRK10406        178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSL  257 (432)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence                                                0000000000          0001111000000000      0 


Q ss_pred             --------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--Hh--cchh
Q psy10938        160 --------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY--YV--QTST  221 (314)
Q Consensus       160 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~--~~--~~~~  221 (314)
                                    +..+.+..+.+....+..+...++..+.|+++||++||+.+.....+..+......  ..  .+..
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPY  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence                          22345555666666676777778888899999999999887766554433332221  11  1222


Q ss_pred             HHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Q psy10938        222 QNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLIDGHC--LILICTLAAMLLIA  298 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~  298 (314)
                      .......+..+..+...+..+.+.+|.+|++.|+++.|+.+..+++ .+...|++.+.+ +..+  ...++..++..+++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~  416 (432)
T PRK10406        338 AAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA  416 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence            2222222222233333455667889999999999999999988774 355588888754 5544  33444455555555


Q ss_pred             HHHHHhcccCCCCC
Q psy10938        299 GVFSMFLPATGKKE  312 (314)
Q Consensus       299 ~~~~~~~~~~~~~~  312 (314)
                      .+..+++ ++++|+
T Consensus       417 ~~~~~~l-~~~~~~  429 (432)
T PRK10406        417 FLVSLML-HRKGKG  429 (432)
T ss_pred             HHHHHHh-hhcccc
Confidence            5554443 444444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.1e-24  Score=195.76  Aligned_cols=285  Identities=19%  Similarity=0.251  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccc--------cchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHH
Q psy10938         29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT--------SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL  100 (314)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  100 (314)
                      ...++.++.+...++...+.+..|.+.++++.+        ..+.+++.+++.++..++++++|+++||+|||+++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~  108 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA  108 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence            333444555677788888888899988888777        789999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhh---hHHHHHHHHHHHhhcccC--------------C-------------------------------
Q psy10938        101 LVDGLCGIASSVA---QYYGVFLALRFINGFASR--------------P-------------------------------  132 (314)
Q Consensus       101 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~--------------P-------------------------------  132 (314)
                      ++..++.+++.+.   .+++.+++.|+++|++.+              |                               
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999988554   445689999999999988              1                               


Q ss_pred             ---------------------------CCCCC-----cccchh----hhhhhcC--------------------------
Q psy10938        133 ---------------------------LIPGH-----PGKVAS----VCDVSAL--------------------------  150 (314)
Q Consensus       133 ---------------------------l~~~~-----~~~~~~----~~~~~~~--------------------------  150 (314)
                                                 +++..     +++.++    ..+..+.                          
T Consensus       189 ~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (481)
T TIGR00879       189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQ  268 (481)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Confidence                                       11110     000000    0000000                          


Q ss_pred             ------CcCCCc-Ccc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhh
Q psy10938        151 ------QPADNS-TVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGA  196 (314)
Q Consensus       151 ------~~~~~~-~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~  196 (314)
                            ....+. ...                           ...+.+....+.......++.+++.++.+++.||++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  348 (481)
T TIGR00879       269 PSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR  348 (481)
T ss_pred             ccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  000000 000                           2334555566777778888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---hc-c------hhHHHHHHHHHHH-hhhhhchhheeeecccccchhhHHHHHHHHhhh
Q psy10938        197 KWFLVAGLVLSSGVAMALYY---VQ-T------STQNLILSCIFEA-LTGCCISVVYCIMVDLFPTNLRVLAAALSSTFG  265 (314)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~---~~-~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  265 (314)
                      |+.+..+..+..++.+.+.+   .. +      .+.......+... ......+....+..|.+|++.|+++.|+.+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  428 (481)
T TIGR00879       349 RPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN  428 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence            99988887777777666542   11 1      2222222222222 233344556677899999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh-cccCCCCCC
Q psy10938        266 RFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF-LPATGKKEL  313 (314)
Q Consensus       266 ~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l  313 (314)
                      ++|++++|.+.|.+.+..+ ...+++.+++.+++.++..+ .||+++++.
T Consensus       429 ~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       429 WLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            9999999999999999866 45567777777776666554 488776654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=1.3e-24  Score=190.80  Aligned_cols=273  Identities=16%  Similarity=0.138  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  108 (314)
                      +..+....++.........|.+|. +.+|+|.|..+.|++.+++.+++.++++++|+++||+||||++..+.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444556666667777788886 5789999999999999999999999999999999999999999999887776654


Q ss_pred             HHH--------hhhHHHHHHHHHHHhhcccC--------------C----------------------------------
Q psy10938        109 ASS--------VAQYYGVFLALRFINGFASR--------------P----------------------------------  132 (314)
Q Consensus       109 ~~~--------~~~~~~~l~~~r~l~G~~~~--------------P----------------------------------  132 (314)
                      ...        ..+|++.+++.|+++|++.+              |                                  
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            322        24688999999999999987              1                                  


Q ss_pred             ---------------------CCCCCcccc--hhhhhhhcCCcCCCcCcc-----------------cccCCCChhHHHH
Q psy10938        133 ---------------------LIPGHPGKV--ASVCDVSALQPADNSTVA-----------------TCSGEVNPEVFSH  172 (314)
Q Consensus       133 ---------------------l~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  172 (314)
                                           .++.+++++  .+.++..+..........                 .+.+.  ...+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~  254 (392)
T PRK12382        177 FAALALTTMVLPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGW--AMAGFT  254 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCcccCchHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHhcCC--chhHHH
Confidence                                 011101000  001111100000000000                 11222  234445


Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccch
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN  252 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  252 (314)
                      .....++.+++++..|++.||+|+|+.+..+..+..+..++..+.++.+......++.+++.+...+.......|..|++
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  334 (392)
T PRK12382        255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ  334 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH
Confidence            55667778889999999999999999888888888877777766666655555566677777777777778888999999


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       253 ~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      +|+++.|+.+...++|..++|.+.|.+.|+.+ ...+...+.+.+++.+..+.
T Consensus       335 ~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        335 VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999887 45566666666665555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=1.9e-24  Score=194.79  Aligned_cols=291  Identities=18%  Similarity=0.211  Sum_probs=202.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--------ccccchhhHHhHhhHHHHHHhhhhhhhcccccchhH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI   94 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~   94 (314)
                      .+++++..++..++.+.++++...+++..|.+++++        +.++.+.+++.+.+.++..++++++|+++||+|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            345677777788888999999999998888887776        888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhh------------hHHHHHHHHHHHhhcccC--------------C----------------
Q psy10938         95 TLIGALLVDGLCGIASSVA------------QYYGVFLALRFINGFASR--------------P----------------  132 (314)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~--------------P----------------  132 (314)
                      +++.+..++.++.+.++++            ++++.+++.|+++|++.|              |                
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999999988887763            336778899999999998              1                


Q ss_pred             -----------------------------------------------CCCCCc-----ccchh-----------------
Q psy10938        133 -----------------------------------------------LIPGHP-----GKVAS-----------------  143 (314)
Q Consensus       133 -----------------------------------------------l~~~~~-----~~~~~-----------------  143 (314)
                                                                     +++..+     ++.++                 
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence                                                           111100     00000                 


Q ss_pred             hhh---hhcCCcCCCcC---cc------------------------------cccCCCChhHHHHHHHHHhhhhhHHhHH
Q psy10938        144 VCD---VSALQPADNST---VA------------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAM  187 (314)
Q Consensus       144 ~~~---~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (314)
                      ..+   ..+.+.++...   ..                              ...+.+...........++..+++.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  326 (479)
T PRK10077        247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLA  326 (479)
T ss_pred             HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            000   00000000000   00                              0112223334445556677888899999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--ch-h-HHHHHHHHHHHhhhh-hchhheeeecccccchhhHHHHHHHH
Q psy10938        188 PLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ--TS-T-QNLILSCIFEALTGC-CISVVYCIMVDLFPTNLRVLAAALSS  262 (314)
Q Consensus       188 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~  262 (314)
                      +++.||+|||+.+..+..+.+++.+++....  +. . ......++.+++.+. ..+..+.++.|.+|++.|+++.|+.+
T Consensus       327 g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~  406 (479)
T PRK10077        327 IMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV  406 (479)
T ss_pred             HHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHH
Confidence            9999999999999988888888776654331  21 1 112222233333332 33667899999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHH------hhhh-HHHHHHHHHHHHHHHHHHH-hcccCCCCCC
Q psy10938        263 TFGRFGGLTGNLMFGFLI------DGHC-LILICTLAAMLLIAGVFSM-FLPATGKKEL  313 (314)
Q Consensus       263 ~~~~~g~~~~p~~~g~l~------~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  313 (314)
                      ...++++++++.+.+.+.      |..+ ...+++.+++.+++.++.+ +.||+|++++
T Consensus       407 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  465 (479)
T PRK10077        407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  465 (479)
T ss_pred             HHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence            999999999988876555      3444 4566666766666666554 4488887653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.93  E-value=1.1e-23  Score=188.29  Aligned_cols=288  Identities=13%  Similarity=0.150  Sum_probs=192.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      ++++|.++...++.....+.++..+++..|.+.++ |+|+.+.+++.+.+.+++.++++++|+++||+|||++++.+..+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            44556666666677777778877788889999888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhh----HHHHHHHHHHHhhcccC---C-------------------------------------------
Q psy10938        103 DGLCGIASSVAQ----YYGVFLALRFINGFASR---P-------------------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~---P-------------------------------------------  132 (314)
                      .+++.+++++++    +++.+++.|++.|++.+   |                                           
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999998888764    78888999999998877   1                                           


Q ss_pred             -------------------------CCCCCcc-----cchhhhh---hhcCC-cC----CC-------cCcc--------
Q psy10938        133 -------------------------LIPGHPG-----KVASVCD---VSALQ-PA----DN-------STVA--------  159 (314)
Q Consensus       133 -------------------------l~~~~~~-----~~~~~~~---~~~~~-~~----~~-------~~~~--------  159 (314)
                                               ++++.++     +++...+   ..+.. ..    ++       +.+.        
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIAN  262 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence                                     1211110     0000000   00000 00    00       0000        


Q ss_pred             -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hhHHHH-HHHHHHHHHHHHHHHHh
Q psy10938        160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GAKWFL-VAGLVLSSGVAMALYYV  217 (314)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~  217 (314)
                                         +..+.+....+.......++.+++.++.|+++||+  +||... .....+..+..+.+...
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~  342 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN  342 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh
Confidence                               22455666777777788888999999999999999  455432 22222223333332222


Q ss_pred             c--chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhh-HHHHHHHHHhhhh-HHHHHHHHH
Q psy10938        218 Q--TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLT-GNLMFGFLIDGHC-LILICTLAA  293 (314)
Q Consensus       218 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~p~~~g~l~~~~~-~~~~~~~~~  293 (314)
                      +  +.+.........+............+..|.+|++.|+++.|+.+...++|+.+ +|.+.|.+.|+.+ ...|++.++
T Consensus       343 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~  422 (452)
T PRK11273        343 PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  422 (452)
T ss_pred             cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHH
Confidence            2  22222222233333322222333445679999999999999999999988765 7999999999987 556667777


Q ss_pred             HHHHHHHHHHhc--ccCCCC
Q psy10938        294 MLLIAGVFSMFL--PATGKK  311 (314)
Q Consensus       294 ~~~~~~~~~~~~--~~~~~~  311 (314)
                      +++++.+...++  +|+|++
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~  442 (452)
T PRK11273        423 GSILAVILLIVVMIGEKRHH  442 (452)
T ss_pred             HHHHHHHHHHHHhccccchH
Confidence            777766655543  455443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.93  E-value=4e-24  Score=193.49  Aligned_cols=270  Identities=16%  Similarity=0.232  Sum_probs=200.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      ++++|+.+..+++.++.+.++....++..|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------
Q psy10938        103 DGLCGIASSVAQYYGVFLALRFINGFASR--------------P------------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------  132 (314)
                      .+++.++..+++|++.+++.|++.|++.+              |                                    
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            99999999999999999999999999876              1                                    


Q ss_pred             -------------------CCCCCc---c--cch---hhhhhh-cCCcC-------------------------------
Q psy10938        133 -------------------LIPGHP---G--KVA---SVCDVS-ALQPA-------------------------------  153 (314)
Q Consensus       133 -------------------l~~~~~---~--~~~---~~~~~~-~~~~~-------------------------------  153 (314)
                                         +++..+   +  ++.   +..+.. +.++.                               
T Consensus       175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
T PRK03893        175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL  254 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence                               011100   0  000   000000 00000                               


Q ss_pred             ----------------CCcC------------------------cc---cccCCCChhHHHHHHHHHhhhhhHHhHHHHH
Q psy10938        154 ----------------DNST------------------------VA---TCSGEVNPEVFSHTLIIGLACIPSSLAMPLL  190 (314)
Q Consensus       154 ----------------~~~~------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  190 (314)
                                      ....                        +.   ...+.+..+.+.......++.+++.++.|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l  334 (496)
T PRK03893        255 GLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFL  334 (496)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0000                        00   2345566777888888899999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhh
Q psy10938        191 VHKMGAKWFLVAGLVLSSGVAMALYYVQTST--QNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFG  268 (314)
Q Consensus       191 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g  268 (314)
                      .||+|+|+.+..+..+..+..+......+..  ......+..+.......+....+..|.+|++.|++++|+.+....+|
T Consensus       335 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  414 (496)
T PRK03893        335 GDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALG  414 (496)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHH
Confidence            9999999988777666655544433332222  22222222233333344566678889999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhH-HHHHHHH
Q psy10938        269 GLTGNLMFGFLIDGHCL-ILICTLA  292 (314)
Q Consensus       269 ~~~~p~~~g~l~~~~~~-~~~~~~~  292 (314)
                      +.++|.+.|.+.|..+. ..+...+
T Consensus       415 ~~lgp~l~g~l~~~~g~~~~~~~~~  439 (496)
T PRK03893        415 GALAPILGALIAQRLDLGTALASLS  439 (496)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHH
Confidence            99999999999998773 3443333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=1.2e-23  Score=181.50  Aligned_cols=271  Identities=25%  Similarity=0.304  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh
Q psy10938         33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  112 (314)
                      .....+....+.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            44566777788888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccCCC------------CCCCcccchhhhh----------------hhcCCcCCCc--------
Q psy10938        113 AQYYGVFLALRFINGFASRPL------------IPGHPGKVASVCD----------------VSALQPADNS--------  156 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~Pl------------~~~~~~~~~~~~~----------------~~~~~~~~~~--------  156 (314)
                      +++++.+++.|++.|++.+..            ++++.........                ..+....+..        
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG  163 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999998810            1100000000000                0000000000        


Q ss_pred             ----------Ccc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHH-
Q psy10938        157 ----------TVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKW-  198 (314)
Q Consensus       157 ----------~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-  198 (314)
                                .+.                           +..+.+..+.+.......++..++.++.+++.||++||+ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  243 (352)
T cd06174         164 LLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL  243 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                      000                           222567778888889999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHH
Q psy10938        199 FLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGF  278 (314)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~  278 (314)
                      .+..+..+..++.+.....++.+......++.+++.+...+....+..|..|+++|++..|+.+...+++..++|.+.|.
T Consensus       244 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~  323 (352)
T cd06174         244 LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL  323 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889988888888888877777777778888888999999999999999999999999999999999999999999999


Q ss_pred             HHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        279 LIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       279 l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      +.|..+ ...+.+.+++.+++.+...
T Consensus       324 l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         324 LLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhcccCcchHHHHHHHHHHHHHHHhe
Confidence            998766 5566777777666655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=2.1e-23  Score=184.09  Aligned_cols=273  Identities=22%  Similarity=0.250  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccch-----hhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q psy10938         32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-----KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (314)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  106 (314)
                      ..+.+.+..........+.+|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||+++..+..+..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            344556666777777888999999999998765     489999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHHhhcccC--C----------------------------------------------------
Q psy10938        107 GIASSVAQYYGVFLALRFINGFASR--P----------------------------------------------------  132 (314)
Q Consensus       107 ~~~~~~~~~~~~l~~~r~l~G~~~~--P----------------------------------------------------  132 (314)
                      .++..++++++.+++.|++.|++.+  |                                                    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            9999999999999999999998766  1                                                    


Q ss_pred             ---------------CCCC-Ccccc---hhhhhhhcCCcCCCcCcc-----------------------cccCCCCh---
Q psy10938        133 ---------------LIPG-HPGKV---ASVCDVSALQPADNSTVA-----------------------TCSGEVNP---  167 (314)
Q Consensus       133 ---------------l~~~-~~~~~---~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~---  167 (314)
                                     ++++ +++++   .+.++..+..++++....                       ........   
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (408)
T PRK09874        178 TASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIA  257 (408)
T ss_pred             HHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence                           1211 11111   111111111111111000                       11111111   


Q ss_pred             -hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        168 -EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                       ..+.......++..++.+..|++.||++||+.+..+.....+..+...+.++.+......++.+++.+...+...+...
T Consensus       258 ~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (408)
T PRK09874        258 FISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence             1233444556677788888999999999999988888877777766666666666666666777788888888888888


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      +..|++.+++.+++.+....+|..++|.+.|.+.|..+ ...|.+.+++.+++.+...+
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999877 56677777777776665554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.92  E-value=1.3e-23  Score=183.90  Aligned_cols=274  Identities=13%  Similarity=0.053  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      +.......+..+.......+.+|.+++|+|.|..+.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            44455666777788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHhhcccC--------------C-------------------------------------------
Q psy10938        110 SSVAQYYGVFLALRFINGFASR--------------P-------------------------------------------  132 (314)
Q Consensus       110 ~~~~~~~~~l~~~r~l~G~~~~--------------P-------------------------------------------  132 (314)
                      +++++|++++++.|++.|++.+              |                                           
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            9999999999999999999877              0                                           


Q ss_pred             -------------CCCCCcccchhhhhhhcCCcCCCcCcc-----------------------cccCCCChhHHHHHHHH
Q psy10938        133 -------------LIPGHPGKVASVCDVSALQPADNSTVA-----------------------TCSGEVNPEVFSHTLII  176 (314)
Q Consensus       133 -------------l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~  176 (314)
                                   +++.+++++.+.++..+..+++.....                       +..+.+..+.+......
T Consensus       165 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  244 (382)
T PRK10091        165 VFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLV  244 (382)
T ss_pred             HHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                         121111111111111111000000000                       23456677788888889


Q ss_pred             HhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhchhhe-eeecccccchhh
Q psy10938        177 GLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY-VQTSTQNLILSCIFEALTGCCISVVY-CIMVDLFPTNLR  254 (314)
Q Consensus       177 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~r  254 (314)
                      .++.++++++.+++.||+++|+.+..+..+..+..+++.. .++.+......++.+.+.....+... ....+..|++.+
T Consensus       245 ~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  324 (382)
T PRK10091        245 GLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELL  324 (382)
T ss_pred             HHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHH
Confidence            9999999999999999999999888888777776655543 33333333333344443333333332 334444455555


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        255 VLAAALSSTFGRFGGLTGNLMFGFLIDGH-C-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       255 ~~~~g~~~~~~~~g~~~~p~~~g~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +.+  ..+...++|.+++|.+.|.+.|.. + ...+...+.+..+........
T Consensus       325 ~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        325 GAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            544  346677899999999999999974 3 344444444444444333333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=2.2e-23  Score=187.02  Aligned_cols=286  Identities=15%  Similarity=0.144  Sum_probs=198.8

Q ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHH
Q psy10938         16 ALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT   95 (314)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~   95 (314)
                      +.+..+.++++++.+.......+...++.....+..|.+.+|+|+|..+.+++.+.+.+++.+++++.|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~  103 (476)
T PLN00028         24 EFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG  103 (476)
T ss_pred             cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            33444455666677777777777777888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC-------------C------------------------------
Q psy10938         96 LIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR-------------P------------------------------  132 (314)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-------------P------------------------------  132 (314)
                      +..+.++.+++.++.+++++++.+++.|++.|++.+             |                              
T Consensus       104 ~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~  183 (476)
T PLN00028        104 SAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF  183 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998877             1                              


Q ss_pred             ----------------------------------CCCCCcccchhhhhhhcCCc-CC----C------cCcc--------
Q psy10938        133 ----------------------------------LIPGHPGKVASVCDVSALQP-AD----N------STVA--------  159 (314)
Q Consensus       133 ----------------------------------l~~~~~~~~~~~~~~~~~~~-~~----~------~~~~--------  159 (314)
                                                        +.++.|+.+  ..+..+..+ ++    .      ....        
T Consensus       184 ~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (476)
T PLN00028        184 PLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN--YRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTY  261 (476)
T ss_pred             HHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc--hhhHHhcCccccccHHHHHHHHHcCchhHHHHHHH
Confidence                                              011111100  000000000 00    0      0000        


Q ss_pred             -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH-------HHHHHHHHHHHHHHHH
Q psy10938        160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK-------WFLVAGLVLSSGVAMA  213 (314)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~  213 (314)
                                         +..+.+..+++....+..++..++++++|+++||++||       ........+.++..++
T Consensus       262 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~  341 (476)
T PLN00028        262 GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIW  341 (476)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Confidence                               22356667778888888999999999999999999865       2333333333333333


Q ss_pred             HHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHH
Q psy10938        214 LYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLA  292 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~  292 (314)
                      +...++.+......++.+++.....+..+++..+.. +++++++.|+.+..+++|+.++|.+.+ ..+..+ ...+++.+
T Consensus       342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~  419 (476)
T PLN00028        342 LGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMG  419 (476)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHH
Confidence            333434333344444555555556666677777765 478999999998887788777777654 112222 45677777


Q ss_pred             HHHHHHHHHHHhc
Q psy10938        293 AMLLIAGVFSMFL  305 (314)
Q Consensus       293 ~~~~~~~~~~~~~  305 (314)
                      ++.+++.++.++.
T Consensus       420 ~~~~i~~~~~~~~  432 (476)
T PLN00028        420 VMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHHHhe
Confidence            7777777766655

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.92  E-value=7.8e-23  Score=179.05  Aligned_cols=281  Identities=11%  Similarity=0.086  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      -.++.+.+..+..+.....+..++++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++..+.++.
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34567777888888889999999999998876 89999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhh-----hHHHHHHHHHHHhhcccC-------------C---------------------------------
Q psy10938        104 GLCGIASSVA-----QYYGVFLALRFINGFASR-------------P---------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~-------------P---------------------------------  132 (314)
                      .+..+..+++     +|++.+++.|++.|++.+             |                                 
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~  190 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP  190 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999987     899999999999999844             1                                 


Q ss_pred             C-C---------------------------------------CCCcccchhhhhhhcCCcCCCcC-cc------------
Q psy10938        133 L-I---------------------------------------PGHPGKVASVCDVSALQPADNST-VA------------  159 (314)
Q Consensus       133 l-~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~------------  159 (314)
                      + .                                       ++.++++.+.++..+..+++... ..            
T Consensus       191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg  270 (462)
T PRK15034        191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIG  270 (462)
T ss_pred             HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence            0 0                                       00000000011110000000000 00            


Q ss_pred             --------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhc-----chhHHHH
Q psy10938        160 --------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL-YYVQ-----TSTQNLI  225 (314)
Q Consensus       160 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~  225 (314)
                              ....++.........+..+...+.++++|+++||+|+++++.++.+...++.... ...+     +.+....
T Consensus       271 ~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~  350 (462)
T PRK15034        271 FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYA  350 (462)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence                    0112222222223344456778888999999999999999988887776665432 2232     1233333


Q ss_pred             HHHHHHHhhhhhchhheeeecccccc---------------------hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        226 LSCIFEALTGCCISVVYCIMVDLFPT---------------------NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      ..+...++.+..+...+-++++.+|+                     ++-|.+.|+....+.+|+.+.|.+.|...+..|
T Consensus       351 ~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g  430 (462)
T PRK15034        351 VFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG  430 (462)
T ss_pred             HHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC
Confidence            33334455666666777777777764                     156889999999999999999999999998876


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhc
Q psy10938        285 --LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       285 --~~~~~~~~~~~~~~~~~~~~~  305 (314)
                        ...++.+.+..+++..+.++.
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        431 SPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH
Confidence              455777777777777776544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.92  E-value=2.6e-23  Score=184.86  Aligned_cols=259  Identities=15%  Similarity=0.128  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHH-hHhh-----HHHHHHhhhhhhhcccccchhHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL-NAAP-----MLGMVFGSYFWGCLADTQGRKITLIGA   99 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~~   99 (314)
                      +++....++++.+++++|+..+++..|.+.+|++.++.+.+.+ .+..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            3456777888999999999999999999999999988876543 3322     233357899999999999999999999


Q ss_pred             HHHHHHHhHHHHhhhHHH--------HHHHHHHHhhcccC--------------C-------------------------
Q psy10938        100 LLVDGLCGIASSVAQYYG--------VFLALRFINGFASR--------------P-------------------------  132 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~--------------P-------------------------  132 (314)
                      ..++.++.++++++++++        .+++.|+++|++.+              |                         
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987        46889999999987              1                         


Q ss_pred             ----------------------------------CCCCCcccchhhhhhhcCCcCC-----CcCcc--------------
Q psy10938        133 ----------------------------------LIPGHPGKVASVCDVSALQPAD-----NSTVA--------------  159 (314)
Q Consensus       133 ----------------------------------l~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------------  159 (314)
                                                        +.+..++.++...+..+....+     .+...              
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTV  252 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence                                              0111111100000000000000     00000              


Q ss_pred             --------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH-HH-HHhcch--h
Q psy10938        160 --------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAM-AL-YYVQTS--T  221 (314)
Q Consensus       160 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~-~~-~~~~~~--~  221 (314)
                                    +..+.+..+.........++.+++.++.|+++||+|||+....+..+..+... .. ....+.  .
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFA  332 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence                          12455666667777788888999999999999999999987766544433221 11 111221  1


Q ss_pred             HHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhh-hhhhhHHHHHHHHHhhhh
Q psy10938        222 QNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGR-FGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~p~~~g~l~~~~~  284 (314)
                      .......+.+++.+...+....+..|.+|++.|+++.|+.+..+. +++.++|.+.|.+.|..+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        333 RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            222223334445555556566788999999999999999766666 458889999999999876

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=9.6e-24  Score=190.47  Aligned_cols=256  Identities=18%  Similarity=0.179  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  105 (314)
                      +|..+..+++..++...|.+.++..+|.+.+|+|.+.++.+|+.+.|.+++.++++++|+++||+|||++++.+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            46678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC---C--------------------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR---P--------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~---P--------------------------------------------------  132 (314)
                      +.+++++++|+++++++|+++|++.+   |                                                  
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~  163 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV  163 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence            99999999999999999999999887   1                                                  


Q ss_pred             ------------------CCCCCccc--chhhhh-----------------hh-------------------------cC
Q psy10938        133 ------------------LIPGHPGK--VASVCD-----------------VS-------------------------AL  150 (314)
Q Consensus       133 ------------------l~~~~~~~--~~~~~~-----------------~~-------------------------~~  150 (314)
                                        ++++.+++  +.....                 ..                         .+
T Consensus       164 f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e  243 (495)
T PRK14995        164 FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQ  243 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence                              12211111  000000                 00                         00


Q ss_pred             Cc-CC---------CcCcc-------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh
Q psy10938        151 QP-AD---------NSTVA-------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG  195 (314)
Q Consensus       151 ~~-~~---------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  195 (314)
                      .+ .+         .....                         ...+.++.+++.......++..++.++.|++.||+|
T Consensus       244 ~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g  323 (495)
T PRK14995        244 LAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLG  323 (495)
T ss_pred             hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            00 00         00000                         235677788888888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhH
Q psy10938        196 AKWFLVAGLVLSSGVAMALYYV---QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTG  272 (314)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~  272 (314)
                      +|+.+..+..+..++...+...   ++.+......++.+++.+...+.......+..|+++++.+.++.+...++|+.+|
T Consensus       324 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G  403 (495)
T PRK14995        324 LRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLG  403 (495)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHH
Confidence            9998888887777666555433   2333445556677888888888888888888999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy10938        273 NLMFGFLID  281 (314)
Q Consensus       273 p~~~g~l~~  281 (314)
                      +.+.|.+.+
T Consensus       404 ~ai~g~i~~  412 (495)
T PRK14995        404 IAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHH
Confidence            999998865

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=9.9e-24  Score=182.79  Aligned_cols=264  Identities=14%  Similarity=0.057  Sum_probs=174.1

Q ss_pred             HHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHH
Q psy10938         40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF  119 (314)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  119 (314)
                      +...+..+++.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+......++|++++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            45667788899999999999999999999999999999999999999999999998776655555544333344799999


Q ss_pred             HHHHHHhhcccC-------------C------------------------------------------------------
Q psy10938        120 LALRFINGFASR-------------P------------------------------------------------------  132 (314)
Q Consensus       120 ~~~r~l~G~~~~-------------P------------------------------------------------------  132 (314)
                      ++.|+++|++.+             |                                                      
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999987             1                                                      


Q ss_pred             --CCCCCcccch---------hhhhhhcCCcCCCcCcc-------------------cccCCCChhHHHHHHHHHhhhhh
Q psy10938        133 --LIPGHPGKVA---------SVCDVSALQPADNSTVA-------------------TCSGEVNPEVFSHTLIIGLACIP  182 (314)
Q Consensus       133 --l~~~~~~~~~---------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~  182 (314)
                        +++.++++++         +.++.++++........                   ...+.+. ..+....+..+.+. 
T Consensus       163 ~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~~~~~~~l~~~~g~-  240 (368)
T TIGR00903       163 AALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-IAGDAVALAILAGL-  240 (368)
T ss_pred             HHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHH-
Confidence              1221111100         01111111110000000                   2233333 24444444444444 


Q ss_pred             HHhHHHHHHHHhhhH---HH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHH
Q psy10938        183 SSLAMPLLVHKMGAK---WF-LVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAA  258 (314)
Q Consensus       183 ~~~~~g~l~d~~g~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~  258 (314)
                        +..+++.||..||   +. ......+.++.+..+.+..+.........+.+++.....+..+++.+|.+|++.|+++.
T Consensus       241 --~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~  318 (368)
T TIGR00903       241 --IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAA  318 (368)
T ss_pred             --HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCccc
Confidence              4457888887543   32 22233344444444444444444444455566666777777889999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        259 ALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       259 g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      |+.+..+++++..+|++.+.+.. .-...|..+++..+++.+....++++
T Consensus       319 G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~~~~~~  367 (368)
T TIGR00903       319 GAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIALLLPND  367 (368)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998884 22456777777777777665544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=7e-23  Score=179.68  Aligned_cols=272  Identities=13%  Similarity=0.075  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  105 (314)
                      .|+.+..+..+.+..........+.+|++.+|+|+++.+.|+..+.+.++..+++++.|+++||+|||+++..+..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            55555555555555555555666778999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC---C--------------------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR---P--------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~---P--------------------------------------------------  132 (314)
                      +.+++.+++|++.+++.|+++|++.+   |                                                  
T Consensus        98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  177 (394)
T PRK10213         98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF  177 (394)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            99999999999999999999999988   1                                                  


Q ss_pred             -----------------CCCCCcccchh---hhhhhcCCcCCCcCcc--------------------cccCCCChhHHHH
Q psy10938        133 -----------------LIPGHPGKVAS---VCDVSALQPADNSTVA--------------------TCSGEVNPEVFSH  172 (314)
Q Consensus       133 -----------------l~~~~~~~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  172 (314)
                                       +++.++++++.   ..+.++++........                    +..+.+....+..
T Consensus       178 ~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~  257 (394)
T PRK10213        178 NAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLV  257 (394)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence                             11111111000   1111111000000000                    2345566667777


Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccch
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN  252 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  252 (314)
                      ....+++.+++.++.+++.||.+++.............+++....++.+......++.+++.+...+...+.+.+..| +
T Consensus       258 ~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~  336 (394)
T PRK10213        258 LLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-D  336 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-c
Confidence            888888999999999999999654443443333333334444444555555666666777777777777778888887 4


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Q psy10938        253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLIL-ICTLAAMLLIA  298 (314)
Q Consensus       253 ~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~-~~~~~~~~~~~  298 (314)
                      .+++..+......++|..+||.+.|.+.|..+... +...+.+.++.
T Consensus       337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            45677788888888999999999999999887444 44444343333

>TIGR00895 2A0115 benzoate transport

Probab=99.92  E-value=6.2e-23  Score=180.24  Aligned_cols=261  Identities=20%  Similarity=0.346  Sum_probs=197.3

Q ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHH
Q psy10938         19 AAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG   98 (314)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~   98 (314)
                      +.+.++++++.+....+..+..+++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   87 (398)
T TIGR00895         8 KQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW   87 (398)
T ss_pred             hCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence            33345566777777777888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C--------------------------------
Q psy10938         99 ALLVDGLCGIASSVAQYYGVFLALRFINGFASR--------------P--------------------------------  132 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P--------------------------------  132 (314)
                      +..+..++.++..++++++.+++.|++.|++.+              |                                
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999987              1                                


Q ss_pred             ------------------------CCCCCc---cc-chhhhh----------------hhcCCcCCC-------------
Q psy10938        133 ------------------------LIPGHP---GK-VASVCD----------------VSALQPADN-------------  155 (314)
Q Consensus       133 ------------------------l~~~~~---~~-~~~~~~----------------~~~~~~~~~-------------  155 (314)
                                              +++..+   ++ .++..+                ..+.+....             
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcch
Confidence                                    111100   00 000000                000000000             


Q ss_pred             cCcc--------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10938        156 STVA--------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSG  209 (314)
Q Consensus       156 ~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~  209 (314)
                      ....                          ...+.+....+.......++.+++.++.+++.||+++|+...........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       248 TARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF  327 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            0000                          23355666777788888899999999999999999998544433333333


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHH
Q psy10938        210 VAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFL  279 (314)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l  279 (314)
                      ..++.....+.+......++.+++.+...+..+++..|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3333332445555666677788888888899999999999999999999999999999999999999875

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=1.3e-23  Score=184.19  Aligned_cols=265  Identities=18%  Similarity=0.187  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHH
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (314)
                      +..+..+...++...|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++..+.++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            45667888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccC--------------C--------------------------------------------------
Q psy10938        117 GVFLALRFINGFASR--------------P--------------------------------------------------  132 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~--------------P--------------------------------------------------  132 (314)
                      +.+++.|++.|++.+              |                                                  
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            999999999999987              1                                                  


Q ss_pred             ------CCCCCccc---chhhhhh-hc-------CCcC---CC-------cCcc--------------------------
Q psy10938        133 ------LIPGHPGK---VASVCDV-SA-------LQPA---DN-------STVA--------------------------  159 (314)
Q Consensus       133 ------l~~~~~~~---~~~~~~~-~~-------~~~~---~~-------~~~~--------------------------  159 (314)
                            ++++++++   .++.++. .+       .++.   +.       +++.                          
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL  242 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                  01111100   0000000 00       0000   00       0000                          


Q ss_pred             -cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHH--HHHHHH--HHHHHHHHHHHH-h---cchhHHHHHHHHH
Q psy10938        160 -TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKW--FLVAGL--VLSSGVAMALYY-V---QTSTQNLILSCIF  230 (314)
Q Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~--~~~~~~~~~~~~-~---~~~~~~~~~~~~~  230 (314)
                       +..+.+..+.+.......+..+++.++.+++.||++||+  ......  ....+....... .   ++.+. .......
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  321 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA-ALALVAL  321 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHH
Confidence             234555667777888888899999999999999999985  111111  111111111111 1   12222 2222233


Q ss_pred             HHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH
Q psy10938        231 EALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFS  302 (314)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~  302 (314)
                      +.+.....+...++..|.+|++.|+++.|+.+...++|+.++|.+.|.+.|..+  ...+.+.+++.+++.+..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       322 GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            333333678888999999999999999999999999999999999999999876  344555555555555444

>KOG0252|consensus

Probab=99.91  E-value=3.3e-24  Score=180.75  Aligned_cols=293  Identities=19%  Similarity=0.297  Sum_probs=212.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-c-------cccchhhHHhHhhHHHHHHhhhhhhhcccccchh
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF-G-------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK   93 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr   93 (314)
                      ..+++...+.+...+.+.+.+|...++.+.|.+...+ |       .++...+.+..+..+|..+||++.|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            3667788888889999999999999999988876554 2       3445678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhh-------HHHHHHHHHHHhhcccC---C-------------------------------
Q psy10938         94 ITLIGALLVDGLCGIASSVAQ-------YYGVFLALRFINGFASR---P-------------------------------  132 (314)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~---P-------------------------------  132 (314)
                      +++...++++.+++++++++.       -..++...|++.|+|.|   |                               
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            999999999999999887752       25678889999999999   3                               


Q ss_pred             --------------------------------------------C-CCC-Ccccch-------h----hhhhhcCCcC--
Q psy10938        133 --------------------------------------------L-IPG-HPGKVA-------S----VCDVSALQPA--  153 (314)
Q Consensus       133 --------------------------------------------l-~~~-~~~~~~-------~----~~~~~~~~~~--  153 (314)
                                                                  + .+- .+|.+.       +    ..|..+....  
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~  274 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDI  274 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccccc
Confidence                                                        0 000 000000       0    0000000000  


Q ss_pred             ------------CCcCcc---------------------------------------cccCCCCh---------hHHHHH
Q psy10938        154 ------------DNSTVA---------------------------------------TCSGEVNP---------EVFSHT  173 (314)
Q Consensus       154 ------------~~~~~~---------------------------------------~~~~~~~~---------~~~~~~  173 (314)
                                  ......                                       ...+..+.         .+-...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  275 EAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             chhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHH
Confidence                        000000                                       11111111         111223


Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch----hHHHH-HHHHHHHhhhhhchhheeeeccc
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS----TQNLI-LSCIFEALTGCCISVVYCIMVDL  248 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      .+...+.++|..+...++|++|||+....++.++.+..+.+....+.    ....+ ..+...++..+-......+.+|.
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~  434 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEI  434 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhh
Confidence            34445566678888899999999999999999999988888766541    11222 22233344556667778899999


Q ss_pred             ccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh-----hhh-HHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q psy10938        249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID-----GHC-LILICTLAAMLLIAGVFSMFLPATGKKELD  314 (314)
Q Consensus       249 ~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  314 (314)
                      +|++.|++..|+....+..|++++....+++.+     ..+ ...+++++.+.+++.+..+++||+++|++|
T Consensus       435 FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  435 FPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLE  506 (538)
T ss_pred             chHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence            999999999999999999999999999999999     444 678899999999998888888999998764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.91  E-value=1.5e-23  Score=185.55  Aligned_cols=277  Identities=14%  Similarity=0.057  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh----
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----  112 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----  112 (314)
                      .++..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+....    
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            4445555566677888888999999999999999999999999999999999999999998888877776655432    


Q ss_pred             -hhHHHHHHHHHHHhhcccC--------------C---------------------------------------------
Q psy10938        113 -AQYYGVFLALRFINGFASR--------------P---------------------------------------------  132 (314)
Q Consensus       113 -~~~~~~l~~~r~l~G~~~~--------------P---------------------------------------------  132 (314)
                       .++++.+++.|++.|++.+              |                                             
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             5678899999999998766              1                                             


Q ss_pred             ----------CCCCCccc---chhhhhh---hcC-CcCCCcCcc----------------------cccCCCChhHHHHH
Q psy10938        133 ----------LIPGHPGK---VASVCDV---SAL-QPADNSTVA----------------------TCSGEVNPEVFSHT  173 (314)
Q Consensus       133 ----------l~~~~~~~---~~~~~~~---~~~-~~~~~~~~~----------------------~~~~~~~~~~~~~~  173 (314)
                                +++.++++   ++..++.   .+. .+++.....                      +..+.+....+...
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~  265 (417)
T PRK10489        186 TFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLY  265 (417)
T ss_pred             HHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHH
Confidence                      12111111   0000110   000 000000000                      22456667777888


Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchh
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNL  253 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  253 (314)
                      ....++.+++.++.+++.||.++++.+..+..+..+..+.+.+.++.+......++.+++.+...+...++..|..|++.
T Consensus       266 ~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  345 (417)
T PRK10489        266 AAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM  345 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            88889999999999999999877777777777777776666655555555555566666666666777788999999999


Q ss_pred             hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH-HHHhcccCCCCCC
Q psy10938        254 RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGV-FSMFLPATGKKEL  313 (314)
Q Consensus       254 r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  313 (314)
                      |+++.|+.+...++|..++|.+.|.+.|..+ ...+...+.+.++..+ .....+++|++++
T Consensus       346 ~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (417)
T PRK10489        346 LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQ  407 (417)
T ss_pred             HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999877 4555555555444444 4445577666543

>KOG0569|consensus

Probab=99.91  E-value=8.9e-23  Score=178.02  Aligned_cols=284  Identities=20%  Similarity=0.234  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc--------ccccc--cccc----hhhHHhHhhHHHHHHhhhhhhhcccccchhHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSA--------QCDFG--MTSS----DKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT   95 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~s~~----~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~   95 (314)
                      .....++.+-.++....+++..+.+        .+.+|  .+++    .++.+.+++.+|.++|++..|+++||+|||..
T Consensus        13 ~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~   92 (485)
T KOG0569|consen   13 VIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA   92 (485)
T ss_pred             HHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            3333444455555555554433322        23455  3333    35778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHh---hhHHHHHHHHHHHhhcccC--------------C--------------------------
Q psy10938         96 LIGALLVDGLCGIASSV---AQYYGVFLALRFINGFASR--------------P--------------------------  132 (314)
Q Consensus        96 l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~--------------P--------------------------  132 (314)
                      +.++.++..++.+++.+   .++++++.++|++.|+..+              |                          
T Consensus        93 l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen   93 LLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            99999988888877665   5889999999999999988              2                          


Q ss_pred             ---------------------------------------C-CCCCcccc-----------------hhhhhhhcCC-cCC
Q psy10938        133 ---------------------------------------L-IPGHPGKV-----------------ASVCDVSALQ-PAD  154 (314)
Q Consensus       133 ---------------------------------------l-~~~~~~~~-----------------~~~~~~~~~~-~~~  154 (314)
                                                             + ++++.++.                 +...+..+.+ ..+
T Consensus       173 l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~  252 (485)
T KOG0569|consen  173 LPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEK  252 (485)
T ss_pred             cHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcccc
Confidence                                                   0 01111100                 0000000000 000


Q ss_pred             CcCcc----------------------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh
Q psy10938        155 NSTVA----------------------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM  194 (314)
Q Consensus       155 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  194 (314)
                      .....                                        ...+.+..++.......+....+.++++.++.||+
T Consensus       253 ~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~  332 (485)
T KOG0569|consen  253 KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL  332 (485)
T ss_pred             ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            00000                                        34567778888889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc---c---hhHH---HHHHHHHHH-hhhhhchhheeeecccccchhhHHHHHHHHhh
Q psy10938        195 GAKWFLVAGLVLSSGVAMALYYVQ---T---STQN---LILSCIFEA-LTGCCISVVYCIMVDLFPTNLRVLAAALSSTF  264 (314)
Q Consensus       195 g~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  264 (314)
                      |||+.+..+..++.++.+++....   +   .|..   +...+++.+ +..+..|+.+-+.+|++|++.|+.+.+.....
T Consensus       333 gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~  412 (485)
T KOG0569|consen  333 GRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAV  412 (485)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHH
Confidence            999999999998888777764431   1   2222   222233333 34455678889999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hcccCCCCCC
Q psy10938        265 GRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSM-FLPATGKKEL  313 (314)
Q Consensus       265 ~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  313 (314)
                      .++...+.......+.+..|...|..+.+.+.+..+..+ ++||||+|+.
T Consensus       413 ~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  413 NWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence            999999999999999999998888888888777777655 5699999863

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.91  E-value=1.3e-22  Score=178.99  Aligned_cols=267  Identities=13%  Similarity=0.003  Sum_probs=192.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      +..+.....+.+..+.+.++...+.+.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34455666667777788888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhHHHHHHHHHHHhhcccC--------------C-------------------------------------
Q psy10938        104 GLCGIASSVAQYYGVFLALRFINGFASR--------------P-------------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~--------------P-------------------------------------  132 (314)
                      .++.+...++++++.+++.|+++|++.+              |                                     
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~  168 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG  168 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence            9999999999999999999999999877              1                                     


Q ss_pred             -------------------CCCCCcccch--hhhh-------hhcCCcCCCcC-----------------cc---cccCC
Q psy10938        133 -------------------LIPGHPGKVA--SVCD-------VSALQPADNST-----------------VA---TCSGE  164 (314)
Q Consensus       133 -------------------l~~~~~~~~~--~~~~-------~~~~~~~~~~~-----------------~~---~~~~~  164 (314)
                                         ++++++++++  +..+       ..++++.....                 +.   +..+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~  248 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQL  248 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence                               1111111100  0011       11111000000                 00   22344


Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhhhhhch
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-----TSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +..+.+.......++..++.++.+++.||+++|+....+..+..++..++...+     +.+......++.+++.+...+
T Consensus       249 ~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~  328 (406)
T PRK15402        249 SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANA  328 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh
Confidence            555556655666677888999999999999999988888777666665554322     223334445556666666665


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHH
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTL  291 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~  291 (314)
                      ..+...... ++++++++.+..+....++..+++.+.+.+.+..+...+...
T Consensus       329 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~  379 (406)
T PRK15402        329 GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLF  379 (406)
T ss_pred             hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence            555444333 458899999999999999999999999999998775444333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=1.5e-22  Score=176.59  Aligned_cols=270  Identities=16%  Similarity=0.104  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHH-HHHHHHHHHhHHHHhh
Q psy10938         36 LYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI-GALLVDGLCGIASSVA  113 (314)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~  113 (314)
                      .++..++......|.+|. +++++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+..++.++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            355666666777787776 57889999999999999999999999999999999999988765 4566666777888899


Q ss_pred             hHHHHHHHHHHHhhcccC---C----------------------------------------------------------
Q psy10938        114 QYYGVFLALRFINGFASR---P----------------------------------------------------------  132 (314)
Q Consensus       114 ~~~~~l~~~r~l~G~~~~---P----------------------------------------------------------  132 (314)
                      +|++.+++.|++.|.+.+   |                                                          
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~  164 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA  164 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence            999999999998887655   1                                                          


Q ss_pred             -----------CCCCCcccchh-----hhhhhcCCcCCCcCcc--------------------cccCCCChhHHHHHHHH
Q psy10938        133 -----------LIPGHPGKVAS-----VCDVSALQPADNSTVA--------------------TCSGEVNPEVFSHTLII  176 (314)
Q Consensus       133 -----------l~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~  176 (314)
                                 +++.+++++++     ..+..++++.+.....                    +..+.+..+.+......
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  244 (375)
T TIGR00899       165 FVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTA  244 (375)
T ss_pred             HHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHH
Confidence                       11111111000     0000000000000000                    22345555566655566


Q ss_pred             HhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHH
Q psy10938        177 GLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVL  256 (314)
Q Consensus       177 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  256 (314)
                      .....++.++.+++.||+|||+.+..+.....+......+.++.+.......+.+++.+...+....+..|..|++ +++
T Consensus       245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~  323 (375)
T TIGR00899       245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGA  323 (375)
T ss_pred             HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhH
Confidence            6667778889999999999999888777666655555555555555555555566667777777778888988764 579


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcc
Q psy10938        257 AAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLP  306 (314)
Q Consensus       257 ~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  306 (314)
                      +.++.+...++|..++|.+.|.+.|..+ ...+++.+++.+++.+...+++
T Consensus       324 ~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       324 ATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999877 5556666666666666555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=2.7e-22  Score=180.40  Aligned_cols=256  Identities=14%  Similarity=0.097  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhH
Q psy10938         29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (314)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  108 (314)
                      .++.++.+.+...++...+.+..|.+.+|+|.|+.+.+++.+.+.++..++++++|+++||+|||++++.+..+..++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            45566677788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------------
Q psy10938        109 ASSVAQYYGVFLALRFINGFASR--------------P------------------------------------------  132 (314)
Q Consensus       109 ~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------------  132 (314)
                      .+.++++++.+++.|+++|++.+              |                                          
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            99999999999999999999988              1                                          


Q ss_pred             --------------CCCCCccc-chhhh-----------------hh---------------------------hcCCcC
Q psy10938        133 --------------LIPGHPGK-VASVC-----------------DV---------------------------SALQPA  153 (314)
Q Consensus       133 --------------l~~~~~~~-~~~~~-----------------~~---------------------------~~~~~~  153 (314)
                                    .++...++ +....                 +.                           .+..++
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR  250 (471)
T ss_pred             HHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                          11111000 00000                 00                           000000


Q ss_pred             CC------cCcc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHH
Q psy10938        154 DN------STVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFL  200 (314)
Q Consensus       154 ~~------~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  200 (314)
                      ..      +++.                           ...+.+....++......++..++..+.+++.||+|+|+.+
T Consensus       251 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~  330 (471)
T PRK10504        251 ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL  330 (471)
T ss_pred             CccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            00      0000                           23456666777777777777888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc-ch--hHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHH
Q psy10938        201 VAGLVLSSGVAMALYYVQ-TS--TQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFG  277 (314)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g  277 (314)
                      ..+..+..+...++.+.+ ..  +......++.+++.+...+..+....+.+|++.++++.|+.+....+|..++|.+.|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        331 VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            888887777666555532 12  122233444556667777777888889999999999999999999999999999999


Q ss_pred             HHHhhhh
Q psy10938        278 FLIDGHC  284 (314)
Q Consensus       278 ~l~~~~~  284 (314)
                      .+.+..+
T Consensus       411 ~ll~~~g  417 (471)
T PRK10504        411 LLLGLFG  417 (471)
T ss_pred             HHHHHhh
Confidence            9988765

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.1e-22  Score=168.10  Aligned_cols=283  Identities=19%  Similarity=0.150  Sum_probs=223.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHH
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  101 (314)
                      .++.+++.+.+...........+.+++++.+.+.+|+|+|++|.+++.++..+..++..++.|.+.||||.|++...+.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            34556777888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhHH---HHHHHHHHHhhcccC-------------C---------------------------------
Q psy10938        102 VDGLCGIASSVAQYY---GVFLALRFINGFASR-------------P---------------------------------  132 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~---~~l~~~r~l~G~~~~-------------P---------------------------------  132 (314)
                      +..+-.+..+++.+.   +++++.+.+.|++.+             |                                 
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            999999999988554   499999999999988             2                                 


Q ss_pred             ------------------------CCCCCcccchhhhhhh--------cCCcCCCcCcc--------------------c
Q psy10938        133 ------------------------LIPGHPGKVASVCDVS--------ALQPADNSTVA--------------------T  160 (314)
Q Consensus       133 ------------------------l~~~~~~~~~~~~~~~--------~~~~~~~~~~~--------------------~  160 (314)
                                              ..++.++.+...++..        ++++.......                    .
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~  247 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT  247 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    0122222211111111        11111000000                    4


Q ss_pred             ccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHHh
Q psy10938        161 CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-------TSTQNLILSCIFEAL  233 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  233 (314)
                      +.+.+..+++.......+.+.+.+..+|+++||+|.+++....+..++++.......+       +........+....+
T Consensus       248 ~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~  327 (417)
T COG2223         248 QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVF  327 (417)
T ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHH
Confidence            5667788888888999999999999999999999999998888888888887776654       233444445556777


Q ss_pred             hhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhc
Q psy10938        234 TGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      .+......+..++.++|+ +.|.+.|+....+.+|+..-|...|...|..+  ...|+++..+.+++.+....+
T Consensus       328 ~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         328 AGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             hccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999975 56899999999999999999999999999987  456777777777777765544

>PRK10133 L-fucose transporter; Provisional

Probab=99.91  E-value=2.2e-22  Score=178.63  Aligned_cols=268  Identities=16%  Similarity=0.147  Sum_probs=201.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      +.....+..++..++..++++....+..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33455566666777888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHH---HhhhHHHHHHHHHHHhhcccC--------------C----------------------------CC-CCC
Q psy10938        104 GLCGIAS---SVAQYYGVFLALRFINGFASR--------------P----------------------------LI-PGH  137 (314)
Q Consensus       104 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~--------------P----------------------------l~-~~~  137 (314)
                      .++.+++   .++++++.++++|+++|+|.+              |                            +. ...
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999875   468999999999999999988              1                            00 000


Q ss_pred             c------------ccc------------------hh----------hhhhhcCC--cCC---C-----------cCcc--
Q psy10938        138 P------------GKV------------------AS----------VCDVSALQ--PAD---N-----------STVA--  159 (314)
Q Consensus       138 ~------------~~~------------------~~----------~~~~~~~~--~~~---~-----------~~~~--  159 (314)
                      +            +..                  ..          ..+..+.+  +..   .           +.+.  
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  261 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR  261 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHH
Confidence            0            000                  00          00000000  000   0           0010  


Q ss_pred             --------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy10938        160 --------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMA  213 (314)
Q Consensus       160 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  213 (314)
                                                +..+.++...+.......++.++|++.++++.||+++|+++..+..+..+.+++
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                                      124667778888889999999999999999999999999988887777666666


Q ss_pred             HHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHH
Q psy10938        214 LYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTL  291 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~  291 (314)
                      ..+.++. .......+.+++.+..+|..++...|..|++ .+++.++.. ...+|+.++|.+.|.+.|..+  ...+++.
T Consensus       342 ~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~  418 (438)
T PRK10133        342 SAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP  418 (438)
T ss_pred             HHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHH
Confidence            5555443 3345566788899999999999999988754 577788776 455789999999999999876  3445443


Q ss_pred             HHH
Q psy10938        292 AAM  294 (314)
Q Consensus       292 ~~~  294 (314)
                      ...
T Consensus       419 ~~~  421 (438)
T PRK10133        419 ALC  421 (438)
T ss_pred             HHH
Confidence            333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.91  E-value=7.6e-23  Score=177.57  Aligned_cols=251  Identities=16%  Similarity=0.031  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  113 (314)
                      ....++.........+.+|.+.++++.++.+.+++.+++.++..++++++|+++||+|||+++..+..+..++.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777888899999999999999999999999999999999999999999999999999999998888888


Q ss_pred             h-----HHHHHHHHHHHhhcccC--------------C------------------------------------------
Q psy10938        114 Q-----YYGVFLALRFINGFASR--------------P------------------------------------------  132 (314)
Q Consensus       114 ~-----~~~~l~~~r~l~G~~~~--------------P------------------------------------------  132 (314)
                      +     +++.+++.|++.|++.+              |                                          
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8     99999999999999888              1                                          


Q ss_pred             -------------CC--CCCcccchh-----hhhhhcC---CcCCCcCcc-------------------------cccCC
Q psy10938        133 -------------LI--PGHPGKVAS-----VCDVSAL---QPADNSTVA-------------------------TCSGE  164 (314)
Q Consensus       133 -------------l~--~~~~~~~~~-----~~~~~~~---~~~~~~~~~-------------------------~~~~~  164 (314)
                                   ++  +++++++++     .++..+.   ..+++....                         +..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGR  244 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence                         11  111101110     0111000   000000000                         12456


Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT-STQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      +..+.+.......++.+++.++.+++.||++||+....+..+.+++.....+.++ .+......++.+++.+...+...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  324 (365)
T TIGR00900       245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT  324 (365)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677788888888999999999999999999999888877777777777666654 555566667778888888888899


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      +..|..|+++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998753

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=3.7e-22  Score=174.74  Aligned_cols=254  Identities=19%  Similarity=0.197  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      ...+....+........+.+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   86 (385)
T TIGR00710         7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG   86 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence            33334444556677778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHhhcccC--------------C-------------------------------------------
Q psy10938        110 SSVAQYYGVFLALRFINGFASR--------------P-------------------------------------------  132 (314)
Q Consensus       110 ~~~~~~~~~l~~~r~l~G~~~~--------------P-------------------------------------------  132 (314)
                      ..++++++.+.+.|++.|++.+              |                                           
T Consensus        87 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  166 (385)
T TIGR00710        87 LALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS  166 (385)
T ss_pred             HHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            9999999999999999999988              1                                           


Q ss_pred             -------------CCCCCcccc-hhh----h---hhhcCCcCCCcCcc--------------------cccCCCChhHHH
Q psy10938        133 -------------LIPGHPGKV-ASV----C---DVSALQPADNSTVA--------------------TCSGEVNPEVFS  171 (314)
Q Consensus       133 -------------l~~~~~~~~-~~~----~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~  171 (314)
                                   +++.+++++ .+.    +   +..++++.......                    +..+.++.+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  246 (385)
T TIGR00710       167 LAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGL  246 (385)
T ss_pred             HHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHH
Confidence                         122111111 000    0   11111110000000                    234566777778


Q ss_pred             HHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----ch-hHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        172 HTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TS-TQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      ......++.+++.++.+++.||+++|+.+..+..+..++.+++....    +. ........+.+++.+...+.......
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  326 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYAL  326 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888899999999999999999999988877766666655544322    12 22233344556667777777778888


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      |..| +.++++.++.+.....++.+.+.+.+.+.+..+
T Consensus       327 ~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  363 (385)
T TIGR00710       327 EDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA  363 (385)
T ss_pred             ccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence            8876 578999999999988666666666665444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.90  E-value=6e-22  Score=174.92  Aligned_cols=276  Identities=13%  Similarity=0.108  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHH-HhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccch-hHHHHHHHHHHHHHhHHHHh
Q psy10938         35 LLYAYAAISITVL-SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        35 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~  112 (314)
                      ..++..+.....+ +++.+.+.+++|+|..|+|++.+++.++..++++++|.++||+|| |+++.++..+..++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555 556677778899999999999999999999999999999999965 77888888888888888888


Q ss_pred             hhHHHHHHHHHHHhhcccCC------------------------------------------------------------
Q psy10938        113 AQYYGVFLALRFINGFASRP------------------------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~P------------------------------------------------------------  132 (314)
                      .++++.+++.|++.|++.+|                                                            
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~~~~~~~~f~~~~~~  168 (418)
T TIGR00889        89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLDIELSNIQLYITAGS  168 (418)
T ss_pred             hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            89999999999888885431                                                            


Q ss_pred             ----------CCCCC-cccc--hhhhhhh-----cCCcCCCcCcc----------------------cccCCC-------
Q psy10938        133 ----------LIPGH-PGKV--ASVCDVS-----ALQPADNSTVA----------------------TCSGEV-------  165 (314)
Q Consensus       133 ----------l~~~~-~~~~--~~~~~~~-----~~~~~~~~~~~----------------------~~~~~~-------  165 (314)
                                +++.+ ++++  ....+..     +..+.+.....                      ...+.+       
T Consensus       169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  248 (418)
T TIGR00889       169 SALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSF  248 (418)
T ss_pred             HHHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchh
Confidence                      11111 0000  0000000     00000000000                      111211       


Q ss_pred             -ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-h---hHHHHHHHHHHHhhhhhchh
Q psy10938        166 -NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT-S---TQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~  240 (314)
                       ....+....+..+..+++.+..+++.||+|+|+.+..+.++..+...++....+ .   +..+...++.+.+.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             244567777788888999999999999999999999999888887766655322 1   22334455566666677777


Q ss_pred             heeeecccccchhhHHHHHHHH-hhhhhhhhhHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHH-hcccCCC
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSS-TFGRFGGLTGNLMFGFLIDGHC-------LILICTLAAMLLIAGVFSM-FLPATGK  310 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~~~p~~~g~l~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~  310 (314)
                      ...++.|.+|++.|+++.|+.+ ....+|.+++|.+.|.+.|+.+       ...|...+++.+++.++.. +++|+++
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            7889999999999999999997 5677999999999999999853       2456666666666555544 4466544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=6.8e-22  Score=174.12  Aligned_cols=255  Identities=13%  Similarity=0.101  Sum_probs=174.3

Q ss_pred             hhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHH---h-hhHHHHHHHHHH
Q psy10938         49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---V-AQYYGVFLALRF  124 (314)
Q Consensus        49 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~  124 (314)
                      +.+|.+.+|+|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++.   . .++++.+++.|+
T Consensus        34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  113 (402)
T TIGR00897        34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG  113 (402)
T ss_pred             HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence            445566688999999999999999999999999999999999999999999999988876553   3 358888999999


Q ss_pred             HhhcccC--------------C--------------------------------------------------------CC
Q psy10938        125 INGFASR--------------P--------------------------------------------------------LI  134 (314)
Q Consensus       125 l~G~~~~--------------P--------------------------------------------------------l~  134 (314)
                      +.|++.+              |                                                        +.
T Consensus       114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  193 (402)
T TIGR00897       114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN  193 (402)
T ss_pred             HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999877              1                                                        01


Q ss_pred             CCC--cccc---hhhhhhhcCCcCCCcCcc--------------------------cccCCCChhHHHHHHHHHhhhhhH
Q psy10938        135 PGH--PGKV---ASVCDVSALQPADNSTVA--------------------------TCSGEVNPEVFSHTLIIGLACIPS  183 (314)
Q Consensus       135 ~~~--~~~~---~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  183 (314)
                      ++.  ++++   ++..+..+..+...+.+.                          +..+.+..+.+.......++..++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig  273 (402)
T TIGR00897       194 KDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVF  273 (402)
T ss_pred             CCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence            111  1100   000000000000000000                          234555666667777788899999


Q ss_pred             HhHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHH
Q psy10938        184 SLAMPLLVHKMGAKWFLV-AGLVLSSGVAMALYY-----VQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLA  257 (314)
Q Consensus       184 ~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  257 (314)
                      .+..|+++||++||+... .+.....+..+.+..     .++.+......++.+++.+...+ ......|.. +++|+++
T Consensus       274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~  351 (402)
T TIGR00897       274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAA  351 (402)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHH
Confidence            999999999999887653 233333333222222     12333444455555655555444 334556654 4689999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        258 AALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       258 ~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      .|+.+...++++.++|++.|.+.|..| ...+++.+++.+++.+...++
T Consensus       352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887 666777777777776666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=8.9e-22  Score=177.66  Aligned_cols=254  Identities=19%  Similarity=0.222  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhH
Q psy10938         29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (314)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  108 (314)
                      .+..++++.+...++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45566678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHhhcccC--------------C------------------------------------------
Q psy10938        109 ASSVAQYYGVFLALRFINGFASR--------------P------------------------------------------  132 (314)
Q Consensus       109 ~~~~~~~~~~l~~~r~l~G~~~~--------------P------------------------------------------  132 (314)
                      ++++++|++.+++.|+++|++.+              |                                          
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            99999999999999999999988              1                                          


Q ss_pred             --------------CCCCCcccchhhh-------------------------------------------------hhhc
Q psy10938        133 --------------LIPGHPGKVASVC-------------------------------------------------DVSA  149 (314)
Q Consensus       133 --------------l~~~~~~~~~~~~-------------------------------------------------~~~~  149 (314)
                                    ++++++++.++..                                                 +..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD  242 (485)
T ss_pred             hHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence                          1111111100000                                                 0000


Q ss_pred             CCcCCC----cCcc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHH
Q psy10938        150 LQPADN----STVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKW  198 (314)
Q Consensus       150 ~~~~~~----~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~  198 (314)
                      .++...    +.+.                           ...+.+..+.+.......++..++.++.|++.||+|||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  322 (485)
T TIGR00711       243 DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK  322 (485)
T ss_pred             CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence            000000    0000                           234667778888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh--c--chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHH
Q psy10938        199 FLVAGLVLSSGVAMALYYV--Q--TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNL  274 (314)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~  274 (314)
                      .+..+..+.+++...+.+.  +  +.+.......+.+++.+...+.......+..|+++++++.|+.+....+|+.+++.
T Consensus       323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  402 (485)
T TIGR00711       323 LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTA  402 (485)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9888888777777766521  2  22334444556677777777666677778889999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy10938        275 MFGFLIDG  282 (314)
Q Consensus       275 ~~g~l~~~  282 (314)
                      +.|.+.++
T Consensus       403 i~g~~~~~  410 (485)
T TIGR00711       403 LITTILTN  410 (485)
T ss_pred             HHHHHHHH
Confidence            99999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=3.5e-21  Score=172.84  Aligned_cols=283  Identities=16%  Similarity=0.138  Sum_probs=195.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------------------ccccccchhhHHhHhhHHHHHHh
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQC----------------------DFGMTSSDKGWLNAAPMLGMVFG   79 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~s~~~~~~~i~   79 (314)
                      ..+.|+.+..+++.++.+++.++..++...+.+.+                      |++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            45677888888899999999999999999888876                      88999999999999999999999


Q ss_pred             hhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh--hHHHHHHHHHHHhhcccC--------------C-----------
Q psy10938         80 SYFWGCLADTQGRKITLIGALLVDGLCGIASSVA--QYYGVFLALRFINGFASR--------------P-----------  132 (314)
Q Consensus        80 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~--------------P-----------  132 (314)
                      +++.|+++||+|||+++..+.++.+++.+++.++  .+++.+++.|+++|++.+              |           
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999998887554  568889999999999988              1           


Q ss_pred             ---------------------------------------------CCCCCcccc----hhhhh----hhcCCc--CCC-c
Q psy10938        133 ---------------------------------------------LIPGHPGKV----ASVCD----VSALQP--ADN-S  156 (314)
Q Consensus       133 ---------------------------------------------l~~~~~~~~----~~~~~----~~~~~~--~~~-~  156 (314)
                                                                   +.+++|+++    ++..+    ..+.++  .+. .
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence                                                         011111111    11110    001000  000 0


Q ss_pred             Cc-------c---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHH---
Q psy10938        157 TV-------A---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWF---  199 (314)
Q Consensus       157 ~~-------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~---  199 (314)
                      ..       .                           +..+.+....+....+..++..++.++.|+++||+++|+.   
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            00       0                           3346677778888888899999999999999999865421   


Q ss_pred             -----HHHHHHHH--HHHHHHHHHhc-chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhh
Q psy10938        200 -----LVAGLVLS--SGVAMALYYVQ-TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLT  271 (314)
Q Consensus       200 -----~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~  271 (314)
                           +.......  .+......... +....+....+.+++.+...+.......|..|+ .+|.+.|+.+..+.+++.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i  411 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLI  411 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHH
Confidence                 11111111  11111122212 222233333344444444455555566677764 8899999999999999999


Q ss_pred             HHHHHHHHHhhh--h--HHHHHHHHHHHHHHHHHHHhc
Q psy10938        272 GNLMFGFLIDGH--C--LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       272 ~p~~~g~l~~~~--~--~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +|.+.|.+.|..  +  ...+.+.++..+++.++....
T Consensus       412 ~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       412 ASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            999999988753  2  445666676777766655444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.89  E-value=8e-22  Score=176.08  Aligned_cols=280  Identities=16%  Similarity=0.150  Sum_probs=202.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHH
Q psy10938         21 GYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL  100 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  100 (314)
                      +.+.++|.++..+++....+..+...++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus        12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   91 (455)
T TIGR00892        12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG   91 (455)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence            34567788887777777766666666788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhhHHHHHHH-HHHHhhcccC----C-------------------------------------------
Q psy10938        101 LVDGLCGIASSVAQYYGVFLA-LRFINGFASR----P-------------------------------------------  132 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~----P-------------------------------------------  132 (314)
                      .+..++.++++++++++.+++ .|++.|++.+    |                                           
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            999999999999999998875 5689999887    1                                           


Q ss_pred             ---------------------CCCCCc------ccc-h------hhhhh-----hcCCcC----C-CcCcc---------
Q psy10938        133 ---------------------LIPGHP------GKV-A------SVCDV-----SALQPA----D-NSTVA---------  159 (314)
Q Consensus       133 ---------------------l~~~~~------~~~-~------~~~~~-----~~~~~~----~-~~~~~---------  159 (314)
                                           +.+..+      ++. +      ...+.     .+...+    + ...+.         
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNV  251 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHH
Confidence                                 011100      000 0      00000     000000    0 00000         


Q ss_pred             -----------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hhHHHHH--HHHHHHHHHHHHHHHhc
Q psy10938        160 -----------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GAKWFLV--AGLVLSSGVAMALYYVQ  218 (314)
Q Consensus       160 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~--~~~~~~~~~~~~~~~~~  218 (314)
                                       ...+.+..+.+...+..+++.++++++.+++.||.  ++|+...  .+....+++.++....+
T Consensus       252 l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  331 (455)
T TIGR00892       252 IMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG  331 (455)
T ss_pred             HHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                             23456677778888888899999999999999973  3333222  22333334444444555


Q ss_pred             chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHH
Q psy10938        219 TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLL  296 (314)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~  296 (314)
                      +.+..+...++.+++.+...+...+...|.+|+++++++.|+.+...++|++++|.+.|.+.|..+  ...+++.+++.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l  411 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV  411 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence            666666667777877778888888899999999999999999999999999999999999999764  345555555544


Q ss_pred             HHHH
Q psy10938        297 IAGV  300 (314)
Q Consensus       297 ~~~~  300 (314)
                      ++.+
T Consensus       412 i~~~  415 (455)
T TIGR00892       412 SAGL  415 (455)
T ss_pred             HHHH
Confidence            4443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=2.6e-21  Score=169.24  Aligned_cols=267  Identities=13%  Similarity=-0.018  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHH----HHHHHHHHHHhH
Q psy10938         33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL----IGALLVDGLCGI  108 (314)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~  108 (314)
                      +...++..+.......|.+|.+.+|+|.|..++|++.+++.+...++++++|+++||+|||+..    ..+..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4455666677778888999999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             HHHhhhHHHHHHHHHHHhhcccC---C-----------------------------------------------------
Q psy10938        109 ASSVAQYYGVFLALRFINGFASR---P-----------------------------------------------------  132 (314)
Q Consensus       109 ~~~~~~~~~~l~~~r~l~G~~~~---P-----------------------------------------------------  132 (314)
                      ....+++++.+++.|+++|.+.+   |                                                     
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            44467899999999998888766   1                                                     


Q ss_pred             ----------CCCC-Ccccchh---------hhhhhcCCcCCCcCcc-------------------cccCCCChhHHHHH
Q psy10938        133 ----------LIPG-HPGKVAS---------VCDVSALQPADNSTVA-------------------TCSGEVNPEVFSHT  173 (314)
Q Consensus       133 ----------l~~~-~~~~~~~---------~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~  173 (314)
                                +.++ +++++++         ..+..++++.......                   .+.+.+....+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~  246 (382)
T TIGR00902       167 GLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLW  246 (382)
T ss_pred             HHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHH
Confidence                      1111 1111100         0001111000000000                   34667777888888


Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchh
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNL  253 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  253 (314)
                      ....+.++++....+++.||+|+|+.+..+.+...+......+.++.+..+....+.++..+...+....++.+. |+++
T Consensus       247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~  325 (382)
T TIGR00902       247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE  325 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh
Confidence            888899999999999999999999999999999999998888888888888888888888888899888899988 9999


Q ss_pred             hHHHHHHHHh-hhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy10938        254 RVLAAALSST-FGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFS  302 (314)
Q Consensus       254 r~~~~g~~~~-~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  302 (314)
                      |++++++++. ...+|..++|.+.|.+.|+.+...++..+.+.+++.++.
T Consensus       326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            9999999875 456999999999999999988777777777776654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=6.5e-22  Score=172.55  Aligned_cols=251  Identities=16%  Similarity=0.165  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh
Q psy10938         35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ  114 (314)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  114 (314)
                      ++++..+.++..+++..|.+.+++|+|+.+.|++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            35667788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccC---C-----------------------------------------------------------
Q psy10938        115 YYGVFLALRFINGFASR---P-----------------------------------------------------------  132 (314)
Q Consensus       115 ~~~~l~~~r~l~G~~~~---P-----------------------------------------------------------  132 (314)
                      +++.+++.|++.|++.+   |                                                           
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            99999999999999887   1                                                           


Q ss_pred             ---------CCCCCccc-----chhhhhh-----hcCCcC-CC---------cCcc------------------------
Q psy10938        133 ---------LIPGHPGK-----VASVCDV-----SALQPA-DN---------STVA------------------------  159 (314)
Q Consensus       133 ---------l~~~~~~~-----~~~~~~~-----~~~~~~-~~---------~~~~------------------------  159 (314)
                               ++++++++     ++...+.     .+.+++ ..         +.+.                        
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPL  241 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     01110000     0000000     000000 00         0000                        


Q ss_pred             ---cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhh-HH-HHHHHH-HHHHHHHHHHHHh--cchhHHHHHHHHHH
Q psy10938        160 ---TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGA-KW-FLVAGL-VLSSGVAMALYYV--QTSTQNLILSCIFE  231 (314)
Q Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  231 (314)
                         +..+.+..+.+.......++.+++.++.+++.||..+ |+ ...... ....++.......  .+........+..+
T Consensus       242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  321 (379)
T TIGR00881       242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG  321 (379)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence               2345566777888888889999999999999998643 32 222221 2222222222221  12223333344445


Q ss_pred             HhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH
Q psy10938        232 ALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL  285 (314)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~  285 (314)
                      .+.....+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.|+.++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  375 (379)
T TIGR00881       322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW  375 (379)
T ss_pred             HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence            444455555567889999999999999999999999999999999999998763

>PRK10054 putative transporter; Provisional

Probab=99.89  E-value=1.2e-21  Score=171.92  Aligned_cols=262  Identities=11%  Similarity=0.029  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHHHHhhcc-ccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh
Q psy10938         35 LLYAYAAISITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (314)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  113 (314)
                      ...+..........+.+| .+.+++|+|..++|++.+.+.++..+++++.|+++||+|||+++..+..+..++.++..++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            444555566666666555 5567899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcccC--------------C-----------------------------------------------
Q psy10938        114 QYYGVFLALRFINGFASR--------------P-----------------------------------------------  132 (314)
Q Consensus       114 ~~~~~l~~~r~l~G~~~~--------------P-----------------------------------------------  132 (314)
                      ++++.+++.|++.|.+.+              |                                               
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i  173 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAF  173 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            999999999988876654              1                                               


Q ss_pred             --------CCCCCcccchhhhhhhcCCcCC-CcCcc---------------------------cccCCCChhHHHHHHHH
Q psy10938        133 --------LIPGHPGKVASVCDVSALQPAD-NSTVA---------------------------TCSGEVNPEVFSHTLII  176 (314)
Q Consensus       133 --------l~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------------~~~~~~~~~~~~~~~~~  176 (314)
                              +++++++++++..+..+.++.. ++...                           ...+.+....+......
T Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  253 (395)
T PRK10054        174 PLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVN  253 (395)
T ss_pred             HHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhh
Confidence                    1222211111100101000000 00000                           01112222334445555


Q ss_pred             HhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhH
Q psy10938        177 GLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV-QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRV  255 (314)
Q Consensus       177 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  255 (314)
                      .+.........+++.||.++|+.+..+..+..+....+.+. ++.+.......+.+++.....|.....+.+..|++.|+
T Consensus       254 ~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~  333 (395)
T PRK10054        254 AAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA  333 (395)
T ss_pred             hhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce
Confidence            55556667788899999999998888887777777666554 33444455566677777777788888999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHhhhhHH-HHHHHHHHHHH
Q psy10938        256 LAAALSSTFGRFGGLTGNLMFGFLIDGHCLI-LICTLAAMLLI  297 (314)
Q Consensus       256 ~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~-~~~~~~~~~~~  297 (314)
                      ++.+..+ ..++|..++|.+.|.+.|+.+.. .+++.+.+..+
T Consensus       334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            9998765 66799999999999999998844 44444444333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=1.9e-21  Score=173.20  Aligned_cols=284  Identities=12%  Similarity=0.149  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHH
Q psy10938         25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (314)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  104 (314)
                      .++..+....+.+...+.++..+....|.+++ +|+|+++.+++.+++.++..+++++.|+++||+|||+.+..+..+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            34566666667777777777777777888776 59999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhh----hHHHHHHHHHHHhhcccC--------------C----------------------------------
Q psy10938        105 LCGIASSVA----QYYGVFLALRFINGFASR--------------P----------------------------------  132 (314)
Q Consensus       105 ~~~~~~~~~----~~~~~l~~~r~l~G~~~~--------------P----------------------------------  132 (314)
                      ++.++..+.    ++++.+.+.|++.|++.+              |                                  
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            988887664    567788889999998776              1                                  


Q ss_pred             -----------------------CCCCCcc----cchhh-hhh----hcCCcCC-----------CcCcc----------
Q psy10938        133 -----------------------LIPGHPG----KVASV-CDV----SALQPAD-----------NSTVA----------  159 (314)
Q Consensus       133 -----------------------l~~~~~~----~~~~~-~~~----~~~~~~~-----------~~~~~----------  159 (314)
                                             +++++++    +.++. .+.    .+..+.+           .+.+.          
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVF  262 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHH
Confidence                                   1111100    00000 000    0000000           00000          


Q ss_pred             -----------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHhc-
Q psy10938        160 -----------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLS---SGVAMALYYVQ-  218 (314)
Q Consensus       160 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~---~~~~~~~~~~~-  218 (314)
                                       +..+.+....+.......+..+++++++|++.||+++++....+....   .+....+...+ 
T Consensus       263 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T TIGR00712       263 VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA  342 (438)
T ss_pred             HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC
Confidence                             223556667777788888899999999999999996432111222111   11222222221 


Q ss_pred             -chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhh-hhHHHHHHHHHhhhh-HHHHHHHHHHH
Q psy10938        219 -TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGG-LTGNLMFGFLIDGHC-LILICTLAAML  295 (314)
Q Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~p~~~g~l~~~~~-~~~~~~~~~~~  295 (314)
                       +.+......+..++..............|.+|++.|+++.|+.+...++|+ +++|.+.|.+.|+.+ ...+.+..++.
T Consensus       343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~  422 (438)
T TIGR00712       343 GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS  422 (438)
T ss_pred             CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHH
Confidence             222222222233322222222223456799999999999999999988875 689999999999877 45566666666


Q ss_pred             HHHHHHHHhc-ccCC
Q psy10938        296 LIAGVFSMFL-PATG  309 (314)
Q Consensus       296 ~~~~~~~~~~-~~~~  309 (314)
                      +++.+..+++ +|.|
T Consensus       423 ~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       423 ILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            6665555444 6654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=1.5e-20  Score=165.15  Aligned_cols=270  Identities=14%  Similarity=0.128  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHH-HHHHhhhhhhhcccccchhHHH-HHHHHHHHHHhHHHHh
Q psy10938         36 LYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITL-IGALLVDGLCGIASSV  112 (314)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~  112 (314)
                      ..++.........|.+|. +.+|+|.|+++.|++.+...+ ++.++.++.++ +||+||||.+ ..+.+...++..+.++
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~  101 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW  101 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            355555665556666655 578899999999999876655 66666665666 9999999875 5666666677778889


Q ss_pred             hhHHHHHHHHH-HHhhcccC--C---------------------------------------------------------
Q psy10938        113 AQYYGVFLALR-FINGFASR--P---------------------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r-~l~G~~~~--P---------------------------------------------------------  132 (314)
                      +++++++++.+ ++.|.+..  |                                                         
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~  181 (393)
T PRK15011        102 NRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAV  181 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence            99999876655 44444433  1                                                         


Q ss_pred             ------------CCCCCcccchhhhhhhcCCcCCCcCcc------------------------cccCCCChhHHHHHHHH
Q psy10938        133 ------------LIPGHPGKVASVCDVSALQPADNSTVA------------------------TCSGEVNPEVFSHTLII  176 (314)
Q Consensus       133 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~  176 (314)
                                  +++..++++....+....+++++....                        +..+.+..+.+......
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~  261 (393)
T PRK15011        182 AFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTA  261 (393)
T ss_pred             HHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                        121111111100000000000000000                        22355555666666666


Q ss_pred             HhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHH
Q psy10938        177 GLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVL  256 (314)
Q Consensus       177 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  256 (314)
                      .+..+++.++.|+++||++||+.+..+.....+.+......++.+......++.++..+...+....+..|..|+ .|++
T Consensus       262 ~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~  340 (393)
T PRK15011        262 AGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGS  340 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccch
Confidence            677788899999999999999887766655555444444444444444444444444444445555667888885 5899


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhccc
Q psy10938        257 AAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       257 ~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      +.++.+...++|..++|.+.|.+.|..++ ..+.+.+++.+++.+..+..||
T Consensus       341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999998774 4555556666665555555554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=1.2e-20  Score=165.94  Aligned_cols=258  Identities=15%  Similarity=0.107  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  105 (314)
                      .++...+.........+....+.|.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34445555555556667777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC---C--------------------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR---P--------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~---P--------------------------------------------------  132 (314)
                      +.+...++++++.+++.|++.|++.+   |                                                  
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f  165 (394)
T PRK11652         86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY  165 (394)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            99999999999999999999999876   0                                                  


Q ss_pred             -----------------CCCCCcccch--hhh----hhhcCCcCCCcCcc--------------------cccCCCChhH
Q psy10938        133 -----------------LIPGHPGKVA--SVC----DVSALQPADNSTVA--------------------TCSGEVNPEV  169 (314)
Q Consensus       133 -----------------l~~~~~~~~~--~~~----~~~~~~~~~~~~~~--------------------~~~~~~~~~~  169 (314)
                                       ++++++++++  +..    +..+++..+.....                    +..+.+....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  245 (394)
T PRK11652        166 LFLLLLGAGVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTV  245 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHH
Confidence                             1221111111  111    11111110000000                    2245556666


Q ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        170 FSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGL-VLSSGVAMALYYV--QTSTQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      +.......++.+++..+.+++.||++++....... ....+........  .+.+.......+.+++.+...+...++..
T Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  325 (394)
T PRK11652        246 SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAM  325 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677777788888888888887443332222 2222222222221  23344455556667777778888888888


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      |..| ++++++.++.+....+|..+++.+.|.+.+...
T Consensus       326 ~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  362 (394)
T PRK11652        326 EPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQ  362 (394)
T ss_pred             hhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            8887 578999999999999999999999998876543

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=1.3e-20  Score=166.00  Aligned_cols=247  Identities=19%  Similarity=0.208  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHH
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (314)
                      .....+....+.|..|.+.+++|.|+++.+++.+++.+++.++++++|+++||+|||+++..+..+..++.+++.+++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   94 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA   94 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            44455666777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccC--------------C--------------------------------------------------
Q psy10938        117 GVFLALRFINGFASR--------------P--------------------------------------------------  132 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~--------------P--------------------------------------------------  132 (314)
                      +.+++.|+++|++.+              |                                                  
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            999999999999876              1                                                  


Q ss_pred             -----CCCCCcccc-h----hhhhhhcCCcCCCcCcc-------------------cccCCCChhHHHHHHHHHhhhhhH
Q psy10938        133 -----LIPGHPGKV-A----SVCDVSALQPADNSTVA-------------------TCSGEVNPEVFSHTLIIGLACIPS  183 (314)
Q Consensus       133 -----l~~~~~~~~-~----~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  183 (314)
                           +.+++++++ +    ...+..++++.......                   +..+.+..+.+.......++..+|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g  254 (401)
T PRK11043        175 LPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVG  254 (401)
T ss_pred             HHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                 111111111 1    11112221111000000                   334566666776666677788889


Q ss_pred             HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HH--hcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHH
Q psy10938        184 SLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YY--VQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAA  258 (314)
Q Consensus       184 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~  258 (314)
                      .+..+++.||+++|+..........++.+.+   ..  .++.+.......+.+++.+..++.......|..| ++++++.
T Consensus       255 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  333 (401)
T PRK11043        255 GYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAA  333 (401)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHH
Confidence            9999999999998886655544444433322   22  1233333334455666777777877777777766 5789999


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        259 ALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       259 g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      |+.+.....++..++.+.|.+.|...
T Consensus       334 g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        334 ALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            99999999999999999999988643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=1.2e-20  Score=165.83  Aligned_cols=245  Identities=18%  Similarity=0.163  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh
Q psy10938         35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ  114 (314)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  114 (314)
                      ...+........+.+.+|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++.++...++
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~   89 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE   89 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence            34445555555666889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccC--------------C------------------------------------------------
Q psy10938        115 YYGVFLALRFINGFASR--------------P------------------------------------------------  132 (314)
Q Consensus       115 ~~~~l~~~r~l~G~~~~--------------P------------------------------------------------  132 (314)
                      +++.+++.|+++|++.+              |                                                
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence            99999999999999887              1                                                


Q ss_pred             --------CCCCCcccchh----h---hhhhcCCcCCCcCcc--------------------cccCCCChhHHHHHHHHH
Q psy10938        133 --------LIPGHPGKVAS----V---CDVSALQPADNSTVA--------------------TCSGEVNPEVFSHTLIIG  177 (314)
Q Consensus       133 --------l~~~~~~~~~~----~---~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~  177 (314)
                              +++++++++++    .   .+..++++.......                    ...+.+..+.+.......
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  249 (392)
T PRK10473        170 VLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTA  249 (392)
T ss_pred             HHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHH
Confidence                    12211111000    0   011111000000000                    223555566677777888


Q ss_pred             hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHH
Q psy10938        178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLA  257 (314)
Q Consensus       178 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  257 (314)
                      +..+++.+..+++.||+|+|+.+..+..+..+..+.+.+.++.+.......+...+.+...+..  ...+..|.+.|+  
T Consensus       250 ~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~--  325 (392)
T PRK10473        250 GVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRA--  325 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc--
Confidence            8899999999999999999999888888777777766665544433333333333333333332  223444544442  


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        258 AALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       258 ~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                       |.......++..+++.+.+.+.+..+
T Consensus       326 -g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        326 -GVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             44444555777777888888877766

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.87  E-value=2.3e-21  Score=167.47  Aligned_cols=240  Identities=23%  Similarity=0.296  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHHHhhcc-ccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh
Q psy10938         34 GLLYAYAAISITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  112 (314)
                      ++..+....+.....+..| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777788888888999 899999999999999999999999999999999999999999999999999999666667


Q ss_pred             hhHHHHHHHHHHHhhcccC--------------C----------------------------------------------
Q psy10938        113 AQYYGVFLALRFINGFASR--------------P----------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~--------------P----------------------------------------------  132 (314)
                      ++|++.+++.|++.|++.+              |                                              
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            7888899999999999987              1                                              


Q ss_pred             ----------CCCCCcc--cchhhhh---hhcC-----CcCCCcC-c--c-----------------------cccCCC-
Q psy10938        133 ----------LIPGHPG--KVASVCD---VSAL-----QPADNST-V--A-----------------------TCSGEV-  165 (314)
Q Consensus       133 ----------l~~~~~~--~~~~~~~---~~~~-----~~~~~~~-~--~-----------------------~~~~~~-  165 (314)
                                +.+++++  ++++.++   ..+.     +..++.. .  .                       +..+.+ 
T Consensus       162 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (352)
T PF07690_consen  162 LIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSG  241 (352)
T ss_dssp             HHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCT
T ss_pred             hhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCH
Confidence                      0111100  0000000   0000     0000000 0  0                       233455 


Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhhhhhchhhe
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ---TSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      ..+.+.......+...++.++.+++.||+++|+..........+..+.+....   +........++.+++.+...+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  321 (352)
T PF07690_consen  242 PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILF  321 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777778888888999999999999999987777666666666555554433   334455566677888888899999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHH
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGN  273 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p  273 (314)
                      .+..|..|+++++++.|+.+...++++.++|
T Consensus       322 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  322 SLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.87  E-value=1.1e-20  Score=167.41  Aligned_cols=270  Identities=14%  Similarity=0.056  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHHHHhhcccc-ccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH---
Q psy10938         35 LLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---  110 (314)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---  110 (314)
                      ...+..........+..|.+ .+++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+..+.....   
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555665554 55599999999999999999999999999999999999999887666555443211   


Q ss_pred             Hhhh-----HHHHHHHHHHHhhcccC-----------------------------------C------------------
Q psy10938        111 SVAQ-----YYGVFLALRFINGFASR-----------------------------------P------------------  132 (314)
Q Consensus       111 ~~~~-----~~~~l~~~r~l~G~~~~-----------------------------------P------------------  132 (314)
                      ..++     .+....+.++..|.+..                                   |                  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~  176 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLG  176 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHH
Confidence            1111     11112233333332221                                   1                  


Q ss_pred             -------------CCCCCcccc-----h-------hhhhhhcCCcCCCcCcc-----------------------c---c
Q psy10938        133 -------------LIPGHPGKV-----A-------SVCDVSALQPADNSTVA-----------------------T---C  161 (314)
Q Consensus       133 -------------l~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~-----------------------~---~  161 (314)
                                   +.++++++.     +       +.++..+..+++.....                       +   .
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (420)
T PRK09528        177 SGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFAT  256 (420)
T ss_pred             HHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                         111111110     0       00000000000000000                       0   1


Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      .+.+....+...++..+...++.++.|++.||+|+|+.+..+..+..+..++..+.++.+.......+.+...+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            12233445666777778888999999999999999999888888888887777777777666555566666665666666


Q ss_pred             eeeecccccchhhHHHHHH-HHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        242 YCIMVDLFPTNLRVLAAAL-SSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ..+..|.+|++.+++..+. .+....+|.+++|.+.|.+.|..| ...+...+++.++..++..+
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999888766 567788999999999999999887 55666666666555554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.87  E-value=2.6e-20  Score=163.99  Aligned_cols=251  Identities=16%  Similarity=0.134  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      +..++...+..++.....+++.|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44556667777888888889999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHh---hhHHHHHHHHHHHhhcccC--------------C----------------------------C-CCC-Cc-c--
Q psy10938        110 SSV---AQYYGVFLALRFINGFASR--------------P----------------------------L-IPG-HP-G--  139 (314)
Q Consensus       110 ~~~---~~~~~~l~~~r~l~G~~~~--------------P----------------------------l-~~~-~~-~--  139 (314)
                      +..   .++++.+++.|++.|+|.+              |                            + ... .+ .  
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            654   4689999999999999988              1                            0 000 00 0  


Q ss_pred             ----------------cchhhhh-----------------hhcCCc-----CC-C-c---------Ccc-----------
Q psy10938        140 ----------------KVASVCD-----------------VSALQP-----AD-N-S---------TVA-----------  159 (314)
Q Consensus       140 ----------------~~~~~~~-----------------~~~~~~-----~~-~-~---------~~~-----------  159 (314)
                                      +...++.                 ..+.++     .. . .         ++.           
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~y  244 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY  244 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHHH
Confidence                            0000000                 000000     00 0 0         000           


Q ss_pred             ---------------ccc--CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhH
Q psy10938        160 ---------------TCS--GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQ  222 (314)
Q Consensus       160 ---------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (314)
                                     ...  +..................+|+++++++.||+++|+.+..+..++.+.+++..+.++.. 
T Consensus       245 vg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-  323 (410)
T TIGR00885       245 VGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-  323 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-
Confidence                           111  11222233345555577889999999999999999999888888888888877766543 


Q ss_pred             HHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        223 NLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      ......+.+++.+..+|..++...+..+++.+..+.++....  +|+.+.|++.|.+.|..
T Consensus       324 ~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       324 GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence            355666777888899999999999999877655555555544  99999999999999964

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=2.6e-20  Score=163.39  Aligned_cols=265  Identities=12%  Similarity=0.014  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh
Q psy10938         33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  112 (314)
                      .+.+.++..+.........+.+.+|++.++.+.+++.+.+.+++.+.++++|+++||+|||++++.+..+..++.+.+.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            34555665554444455555667899999999999999999999999999999999999999999999999998888877


Q ss_pred             hhHHHHHHHHHHHhhcccC---C---------------------------------------------------------
Q psy10938        113 AQYYGVFLALRFINGFASR---P---------------------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~---P---------------------------------------------------------  132 (314)
                      ++++   ++.|+++|++.+   |                                                         
T Consensus        88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~  164 (393)
T PRK11195         88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYL  164 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765   678999999998   2                                                         


Q ss_pred             --------CCCCCcccc---hh----hhhhhcC----CcCCCcCcc-----------------------cccCCCChhHH
Q psy10938        133 --------LIPGHPGKV---AS----VCDVSAL----QPADNSTVA-----------------------TCSGEVNPEVF  170 (314)
Q Consensus       133 --------l~~~~~~~~---~~----~~~~~~~----~~~~~~~~~-----------------------~~~~~~~~~~~  170 (314)
                              +++.+++++   .+    ..+..+.    .+++.....                       +..+.++.+.+
T Consensus       165 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G  244 (393)
T PRK11195        165 LAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPA  244 (393)
T ss_pred             HHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence                    121111100   00    1111000    000000000                       23466777888


Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      .......++.+++.+..+++.||.++++.+..+.. .++....+.+.++.+......++.+++.+...+...+...|..|
T Consensus       245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~  323 (393)
T PRK11195        245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGH  323 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc
Confidence            88888899999999999999999888877766643 33333344444444444455556677767666767777778766


Q ss_pred             chh-hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy10938        251 TNL-RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS  302 (314)
Q Consensus       251 ~~~-r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~  302 (314)
                      ++. +|++.++.+...+++..++..+.+.+ +..+ ...+.+.+...+++..+.
T Consensus       324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             ccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            654 79999999999999999999999855 5555 444444444444444433

>KOG1330|consensus

Probab=99.86  E-value=6.1e-21  Score=161.72  Aligned_cols=260  Identities=18%  Similarity=0.164  Sum_probs=183.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      +..++.+.++++..++++.|++.+..+.+.+++.+|++++..|++.+.+.+.+.+.+|++|+++|||.||+++.+|..++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhHHHHHHHHHHHhhcccC---C------------------------------------------------
Q psy10938        104 GLCGIASSVAQYYGVFLALRFINGFASR---P------------------------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~---P------------------------------------------------  132 (314)
                      .++.++++++..+|+++++|.+.|+|.+   |                                                
T Consensus       109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr  188 (493)
T KOG1330|consen  109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR  188 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence            9999999999999999999999999999   1                                                


Q ss_pred             ------------------CCCCCccc------ch----------hhhhhhcCCcCCCcCcc-------------------
Q psy10938        133 ------------------LIPGHPGK------VA----------SVCDVSALQPADNSTVA-------------------  159 (314)
Q Consensus       133 ------------------l~~~~~~~------~~----------~~~~~~~~~~~~~~~~~-------------------  159 (314)
                                        +-.++|++      +.          .++|.....+.+.....                   
T Consensus       189 ~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p  268 (493)
T KOG1330|consen  189 WAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAP  268 (493)
T ss_pred             EEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhh
Confidence                              01111111      00          01111111110000000                   


Q ss_pred             -------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH----HHHH-------HHHHHHHHHHHHHHHhcc-h
Q psy10938        160 -------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK----WFLV-------AGLVLSSGVAMALYYVQT-S  220 (314)
Q Consensus       160 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~-------~~~~~~~~~~~~~~~~~~-~  220 (314)
                             +..+...........+...++.+|.+++|.++||+.|+    ....       .+..+++..+.+.....+ .
T Consensus       269 ~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s  348 (493)
T KOG1330|consen  269 AFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSS  348 (493)
T ss_pred             hHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHH
Confidence                   22233445666777888899999999999999995431    1111       111222222222222222 2


Q ss_pred             hHHHHHHHHHH-HhhhhhchhheeeecccccchhhHHHHHHHHhhhh-hhhhhHHHHHHHHHhhh
Q psy10938        221 TQNLILSCIFE-ALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGR-FGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       221 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~p~~~g~l~~~~  283 (314)
                      .......++.+ ......+........|++|++.|.++.++...+.. .|.+-+|++.|.+.|+.
T Consensus       349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  349 MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            22222222333 23444455556788999999999999999988876 77778888999999874

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=7.7e-21  Score=164.76  Aligned_cols=239  Identities=17%  Similarity=0.120  Sum_probs=177.1

Q ss_pred             HHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q psy10938         45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF  124 (314)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  124 (314)
                      ...++++|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+ .+++++.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999888888877 7889999999999


Q ss_pred             HhhcccC--------------C------------------------------------------------------CCCC
Q psy10938        125 INGFASR--------------P------------------------------------------------------LIPG  136 (314)
Q Consensus       125 l~G~~~~--------------P------------------------------------------------------l~~~  136 (314)
                      +.|++.+              |                                                      +.+.
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~  175 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWIPQV  175 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999887              1                                                      0110


Q ss_pred             CcccchhhhhhhcCCcCCCcCcc--------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHH
Q psy10938        137 HPGKVASVCDVSALQPADNSTVA--------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLL  190 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  190 (314)
                      +++++++..+......+..+++.                          ++.+.+..+.+...+...++.++++++.|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l  255 (355)
T TIGR00896       176 RRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPAL  255 (355)
T ss_pred             ccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            00000000000000000000000                          3346667778888889999999999999999


Q ss_pred             HHHh-hhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccc-cchhhHHHHHHHHhhhhhh
Q psy10938        191 VHKM-GAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLF-PTNLRVLAAALSSTFGRFG  268 (314)
Q Consensus       191 ~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g  268 (314)
                      .||+ +||+.+..+..+..++.+.+.+.++..... ...+.+++.+..++...+...+.. +++.+++..++.+..++++
T Consensus       256 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  334 (355)
T TIGR00896       256 ARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLL  334 (355)
T ss_pred             HhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            9999 566666677777777666665554433322 345667777777777666665444 4567799999999999999


Q ss_pred             hhhHHHHHHHHHhhhhH
Q psy10938        269 GLTGNLMFGFLIDGHCL  285 (314)
Q Consensus       269 ~~~~p~~~g~l~~~~~~  285 (314)
                      ..++|.+.|.+.|+.+.
T Consensus       335 ~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       335 AALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999998763

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=4.2e-20  Score=165.56  Aligned_cols=278  Identities=17%  Similarity=0.119  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh
Q psy10938         28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  107 (314)
                      +.+..++.+.++..++..+.....+.+..+..-|+...+++..+..+...+.++++|.++||++|||+++.+..+..+..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            34444556666677777777777788888888889999999999999999999999999999999999999998877655


Q ss_pred             HHHHhh-----hHHHHHHHHHHHhhcccC---C-----------------------------------------------
Q psy10938        108 IASSVA-----QYYGVFLALRFINGFASR---P-----------------------------------------------  132 (314)
Q Consensus       108 ~~~~~~-----~~~~~l~~~r~l~G~~~~---P-----------------------------------------------  132 (314)
                      +..++.     .+++.+++.-++.|++.+   |                                               
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            544432     478889999999999988   1                                               


Q ss_pred             -------------------CCCCCcccc---hh----hhhhhcCCcCCCcCcc------------------------ccc
Q psy10938        133 -------------------LIPGHPGKV---AS----VCDVSALQPADNSTVA------------------------TCS  162 (314)
Q Consensus       133 -------------------l~~~~~~~~---~~----~~~~~~~~~~~~~~~~------------------------~~~  162 (314)
                                         .+++.++++   ++    .++-++.....+....                        +..
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l  249 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVL  249 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh
Confidence                               111111111   11    1111111000000000                        344


Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +......++..+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+.+.++.+......++.|++.........
T Consensus       250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778888999999999999999999999998888888888888888888888888878888888888888888888


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +...+..|++.||++++++++....+..+|.++.|.+.|..+ ...+.+.++..+++.++....
T Consensus       330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988 555655565555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.85  E-value=6e-20  Score=160.44  Aligned_cols=235  Identities=21%  Similarity=0.277  Sum_probs=163.5

Q ss_pred             HHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q psy10938         42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA  121 (314)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  121 (314)
                      +...++.|.+|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+..+..++.+.+.++++++.+++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccC--------------C-------------------------------------------------------
Q psy10938        122 LRFINGFASR--------------P-------------------------------------------------------  132 (314)
Q Consensus       122 ~r~l~G~~~~--------------P-------------------------------------------------------  132 (314)
                      .|++.|++.+              |                                                       
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887              1                                                       


Q ss_pred             -CCCCCcccch---hhhhhhc----CCcCCCcCcc-----------------------cccCCCChhHHHHHHHHHhhhh
Q psy10938        133 -LIPGHPGKVA---SVCDVSA----LQPADNSTVA-----------------------TCSGEVNPEVFSHTLIIGLACI  181 (314)
Q Consensus       133 -l~~~~~~~~~---~~~~~~~----~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                       ++++.+++++   +.++..+    ..+++.....                       +..+.+..+.+.......+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~  244 (377)
T PRK11102        165 FIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLF  244 (377)
T ss_pred             hCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence             1221111110   0000000    0000000000                       2345667778888888889999


Q ss_pred             hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---Hhc-chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHH
Q psy10938        182 PSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY---YVQ-TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLA  257 (314)
Q Consensus       182 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  257 (314)
                      ++.++.+++.||+|+|+.+..+..+..+..+...   ..+ +.+.......+.....+...+.......|..| +.++++
T Consensus       245 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  323 (377)
T PRK11102        245 VMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTA  323 (377)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHH
Confidence            9999999999999999988877765443332222   222 22222222333333344444445556677766 788999


Q ss_pred             HHHHHhhhh-hhhhhHHHHHH
Q psy10938        258 AALSSTFGR-FGGLTGNLMFG  277 (314)
Q Consensus       258 ~g~~~~~~~-~g~~~~p~~~g  277 (314)
                      .++.+.... +|..+++++.+
T Consensus       324 ~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        324 SSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999887654 66667766654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.85  E-value=7.3e-20  Score=160.96  Aligned_cols=266  Identities=15%  Similarity=0.042  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHhhcc-ccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh
Q psy10938         36 LYAYAAISITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ  114 (314)
Q Consensus        36 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  114 (314)
                      ..++.........+++| .+++++|+|..+.|++.+...+...+.+++.|+++||+|||+++..+..+..++.+.+.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~   97 (400)
T PRK11646         18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc
Confidence            33333444444455554 46788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccC---C-----------------------------------------------------------
Q psy10938        115 YYGVFLALRFINGFASR---P-----------------------------------------------------------  132 (314)
Q Consensus       115 ~~~~l~~~r~l~G~~~~---P-----------------------------------------------------------  132 (314)
                      +++++++.|+++|++.+   |                                                           
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~  177 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLA  177 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999877   1                                                           


Q ss_pred             -------CCCCCcc-cch----hhhhhhcCCcCCCcC-----------------cc--cccCCCChhHHHHHHHHHhhhh
Q psy10938        133 -------LIPGHPG-KVA----SVCDVSALQPADNST-----------------VA--TCSGEVNPEVFSHTLIIGLACI  181 (314)
Q Consensus       133 -------l~~~~~~-~~~----~~~~~~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                             +++.+++ .++    ..++..++++.....                 +.  ++.+..+.+.+.......+...
T Consensus       178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~  257 (400)
T PRK11646        178 AAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSL  257 (400)
T ss_pred             HHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHH
Confidence                   1111110 000    111111111100000                 00  2223344556666566555555


Q ss_pred             hHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHH
Q psy10938        182 PSSLAMPLLVH-KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAAL  260 (314)
Q Consensus       182 ~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~  260 (314)
                      .+....++..| |++.++.+..+..+.++...++.+.++.+.......+.+.+.+...|...+...|..|+++|+++.|+
T Consensus       258 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~  337 (400)
T PRK11646        258 TLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGF  337 (400)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhH
Confidence            44444455554 56656666666666666666666666555544445556666667777888899999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHH
Q psy10938        261 SSTFGRFGGLTGNLMFGFLIDGHC-----LILICTLAAMLLIAGVF  301 (314)
Q Consensus       261 ~~~~~~~g~~~~p~~~g~l~~~~~-----~~~~~~~~~~~~~~~~~  301 (314)
                      .+....+|..++|.+.|.+.|+.+     ...++..+.+.+++.+.
T Consensus       338 ~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        338 SRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999853     34444445555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.85  E-value=3.1e-20  Score=162.77  Aligned_cols=245  Identities=18%  Similarity=0.162  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHhhccccccccc--cccchhhHHhHh-----hHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH
Q psy10938         38 AYAAISITVLSFVLPSAQCDFG--MTSSDKGWLNAA-----PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (314)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  110 (314)
                      +.+++++..+++..+.+.+++.  .++++.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888877754  455666655443     334445789999999999999999999999999999999


Q ss_pred             HhhhHHH--------HHHHHHHHhhcccC---C-----------------------------------------------
Q psy10938        111 SVAQYYG--------VFLALRFINGFASR---P-----------------------------------------------  132 (314)
Q Consensus       111 ~~~~~~~--------~l~~~r~l~G~~~~---P-----------------------------------------------  132 (314)
                      +++++++        .+++.|+++|++.+   |                                               
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9998875        48889999999877   1                                               


Q ss_pred             ---------------------------CCCCCcccchhhhhhhcCCcCC-----CcCc--c-------------------
Q psy10938        133 ---------------------------LIPGHPGKVASVCDVSALQPAD-----NSTV--A-------------------  159 (314)
Q Consensus       133 ---------------------------l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~-------------------  159 (314)
                                                 ++++++.+++  ++..+..+..     +...  .                   
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKA--QEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT  240 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHH--HhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       0000000000  0000000000     0000  0                   


Q ss_pred             -------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHH-HHh--cchhHHHHHHH
Q psy10938        160 -------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVA-MAL-YYV--QTSTQNLILSC  228 (314)
Q Consensus       160 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~  228 (314)
                             +..+.+..+.+.......+...++.++.+++.||+|||+.+.....+..+.. ... ...  ++.+......+
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (394)
T TIGR00883       241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL  320 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence                   2334566677777788888999999999999999999987765554443322 222 222  23334444455


Q ss_pred             HHHHhhhhhchhheeeecccccchhhHHHHHHHHhh-hhhhhhhHHHHHHHHHhhhh
Q psy10938        229 IFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTF-GRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~~~p~~~g~l~~~~~  284 (314)
                      +.+++.+...+..++...|.+|++.|+++.++.... ..+|..++|.+.|.+.|+.+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       321 GLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            566667777888899999999999999999985444 55888899999999999877

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.84  E-value=4.4e-19  Score=155.27  Aligned_cols=262  Identities=12%  Similarity=-0.046  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchh----HHHHHHHHHHHHHhHHHHh
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK----ITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~  112 (314)
                      ++..........|.+|.+.+|+|.|..++|++.+++.++..++++++|+++||+|||    +.+.+...+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445566778889999999999999999999999999999999999999999984    3333222222  2233444


Q ss_pred             hhHHHHHHHHHHHhhcccC---C---------------------------------------------------------
Q psy10938        113 AQYYGVFLALRFINGFASR---P---------------------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~---P---------------------------------------------------------  132 (314)
                      +++++.+++.|++.|++.+   |                                                         
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~  170 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS  170 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            6889999999999998766   1                                                         


Q ss_pred             ------C-CCCCcccch---------hhhhhhcCCcCCCcCc-c------------------cccCCCChhHHHHHHHHH
Q psy10938        133 ------L-IPGHPGKVA---------SVCDVSALQPADNSTV-A------------------TCSGEVNPEVFSHTLIIG  177 (314)
Q Consensus       133 ------l-~~~~~~~~~---------~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~  177 (314)
                            . ++.++++++         +..+..++++...... .                  .+.+.+..+.+.......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~  250 (382)
T PRK11128        171 MLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGV  250 (382)
T ss_pred             HHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHH
Confidence                  0 111111100         0011111100000000 0                  234556666777777777


Q ss_pred             hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHH
Q psy10938        178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLA  257 (314)
Q Consensus       178 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  257 (314)
                      +..++...+.+++.||+++|+.+..+.+..++..+...+.++.+..+...++.+++.+...+....+..+. +++++++.
T Consensus       251 ~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~  329 (382)
T PRK11128        251 VAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRL  329 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHH
Confidence            88888999999999999999999888888888877777777777777777777877777777777887776 55667888


Q ss_pred             HHHHHhh-hhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10938        258 AALSSTF-GRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVF  301 (314)
Q Consensus       258 ~g~~~~~-~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~  301 (314)
                      .+..+.. ..+|..++|.+.|.+.|..+...++..+++.+++.++
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9988744 4577799999999999998876666666665554443

>KOG0254|consensus

Probab=99.84  E-value=2.9e-19  Score=162.01  Aligned_cols=286  Identities=20%  Similarity=0.217  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHhhccccccccc-----ccc--chhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHH
Q psy10938         28 ILVIFGGLLYAYAAIS--ITVLSFVLPSAQCDFG-----MTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG   98 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~   98 (314)
                      ..........+..+++  ....+++.+.+.++..     .+.  .+.+++.+...++..++++++|+++|++|||+.++.
T Consensus        45 ~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~  124 (513)
T KOG0254|consen   45 LLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLL  124 (513)
T ss_pred             HHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444444555554  3344555555555321     122  345899999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC------C----------------------------------------
Q psy10938         99 ALLVDGLCGIASSVAQYYGVFLALRFINGFASR------P----------------------------------------  132 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~------P----------------------------------------  132 (314)
                      +.+++.++.+++++++|+++++++|+++|+|.|      |                                        
T Consensus       125 ~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~  204 (513)
T KOG0254|consen  125 AVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV  204 (513)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            999999999999999999999999999999999      1                                        


Q ss_pred             -----------------------------------------------CCCCCccc-chhhhhhh----cCC---cCC---
Q psy10938        133 -----------------------------------------------LIPGHPGK-VASVCDVS----ALQ---PAD---  154 (314)
Q Consensus       133 -----------------------------------------------l~~~~~~~-~~~~~~~~----~~~---~~~---  154 (314)
                                                                     +...++++ .....+..    ...   ..+   
T Consensus       205 ~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (513)
T KOG0254|consen  205 YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASW  284 (513)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccH
Confidence                                                           00000000 00000000    000   000   


Q ss_pred             -----C-cCcc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHH
Q psy10938        155 -----N-STVA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLV  201 (314)
Q Consensus       155 -----~-~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  201 (314)
                           + ..+.                           +..+..... .....+.++..+++..++.++.||+|||+.+.
T Consensus       285 ~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  285 GELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLL  363 (513)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence                 0 0000                           112222222 55667777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc------------hhHHHHH-HHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhh
Q psy10938        202 AGLVLSSGVAMALYYVQT------------STQNLIL-SCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFG  268 (314)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g  268 (314)
                      .+...+.++.+++.....            .+..+.. .+....+..+..++.+.+..|.+|.+.|+++.++.....++.
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            999999988887654321            1112222 222333455556677789999999999999999999999988


Q ss_pred             hhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH--HHHhcccCCCCCCC
Q psy10938        269 GLTGNLMFGFLIDGHC-LILICTLAAMLLIAGV--FSMFLPATGKKELD  314 (314)
Q Consensus       269 ~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~  314 (314)
                      +.+-......+.+..+ ...+..++..+.+...  ...++||||++.++
T Consensus       444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sle  492 (513)
T KOG0254|consen  444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLE  492 (513)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence            8877777666666654 5556555555555555  33455999998753

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.84  E-value=8.2e-24  Score=189.18  Aligned_cols=279  Identities=25%  Similarity=0.372  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHHhhccccc--cccccc---------cchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQ--CDFGMT---------SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      .++.+..+++...++...+...  .+++.+         +.+.++..+...+|..+|++++|.++||+|||+.+..+..+
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445777888877766654443  222222         23468999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhh---HHHHHHHHHHHhhcccC--------------C---------------------------------
Q psy10938        103 DGLCGIASSVAQ---YYGVFLALRFINGFASR--------------P---------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~--------------P---------------------------------  132 (314)
                      ..++.++.++++   |++.+.++|++.|++.|              |                                 
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   99999999999999998              1                                 


Q ss_pred             --------------------------------C-CCCCcccc-h-------------hhhhhhcCCcCC-----------
Q psy10938        133 --------------------------------L-IPGHPGKV-A-------------SVCDVSALQPAD-----------  154 (314)
Q Consensus       133 --------------------------------l-~~~~~~~~-~-------------~~~~~~~~~~~~-----------  154 (314)
                                                      | .+++.++. +             +..+..+..++.           
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence                                            0 00000000 0             000000000000           


Q ss_pred             Cc-C--cc---------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHH
Q psy10938        155 NS-T--VA---------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGL  204 (314)
Q Consensus       155 ~~-~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  204 (314)
                      +. +  ..                           ...+.+..  ........+...++.+.+.++.||+|||+.+..+.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~  323 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL  323 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            00 0  00                           01111111  23344555667778888889999999999998888


Q ss_pred             HHHHHHHHHHH--H--hcch-----hHHHHHHHHHHH-hhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHH
Q psy10938        205 VLSSGVAMALY--Y--VQTS-----TQNLILSCIFEA-LTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNL  274 (314)
Q Consensus       205 ~~~~~~~~~~~--~--~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~  274 (314)
                      .+++++.+.+.  .  ..+.     ...+....+... ...+..+..+.+..|.+|++.|+++.|+....++++++++|.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~  403 (451)
T PF00083_consen  324 LLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPF  403 (451)
T ss_pred             ccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88777776663  1  1121     112222222222 233455667789999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCCCCCCC
Q psy10938        275 MFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATGKKELD  314 (314)
Q Consensus       275 ~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  314 (314)
                      +...+.+..+ ...+.++++++++..+.. .++|||++|+++
T Consensus       404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~  445 (451)
T PF00083_consen  404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE  445 (451)
T ss_pred             ccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence            9998888877 667777777766666654 456999998763

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=9.2e-20  Score=158.59  Aligned_cols=238  Identities=17%  Similarity=0.140  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         31 IFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      +..+...+........+.++.|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34556667777788888999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh-HHHHHHHHHHHhhcccC-------------C----------------------------C--------------
Q psy10938        110 SSVAQ-YYGVFLALRFINGFASR-------------P----------------------------L--------------  133 (314)
Q Consensus       110 ~~~~~-~~~~l~~~r~l~G~~~~-------------P----------------------------l--------------  133 (314)
                      +.+++ +++.+++.|+++|++.+             |                            +              
T Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        84 AGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999 99999999999999866             1                            0              


Q ss_pred             ------------------------CCCCccc-chhhhhhhcC-C---------cCC--CcCcc-----------------
Q psy10938        134 ------------------------IPGHPGK-VASVCDVSAL-Q---------PAD--NSTVA-----------------  159 (314)
Q Consensus       134 ------------------------~~~~~~~-~~~~~~~~~~-~---------~~~--~~~~~-----------------  159 (314)
                                              .++.+++ +++.+...+. .         ...  ...+.                 
T Consensus       164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (366)
T TIGR00886       164 AWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG  243 (366)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence                                    0000000 0000000000 0         000  00000                 


Q ss_pred             ----------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHH
Q psy10938        160 ----------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLI  225 (314)
Q Consensus       160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  225 (314)
                                +..+.+..+.+.......+..++++++.+++.||+|+|+....+......+..++.+..    +.+....
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence                      23455667777778888888999999999999999998877766666555555444322    2223333


Q ss_pred             HHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhh
Q psy10938        226 LSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGG  269 (314)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~  269 (314)
                      ...+..++.+...+..+...++..| ++++++.|+.+..+++|+
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            3444555666667777888888887 689999999999988764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=9.6e-19  Score=153.89  Aligned_cols=272  Identities=13%  Similarity=0.054  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH
Q psy10938         32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (314)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  110 (314)
                      .+...+++.+.....+.|.+|.+ .+++|.|+.+.|++.+++.++..+++++.|+++||+|||+.++.+.....++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33444555556666666777665 55689999999999999999999999999999999999999988776665543322


Q ss_pred             H---hh-----hHHHHHHHHHHHhhcccC---C-----------------------------------------------
Q psy10938        111 S---VA-----QYYGVFLALRFINGFASR---P-----------------------------------------------  132 (314)
Q Consensus       111 ~---~~-----~~~~~l~~~r~l~G~~~~---P-----------------------------------------------  132 (314)
                      .   +.     +.+..+.+.+++.|++.+   |                                               
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f  165 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVF  165 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhccCchHHH
Confidence            1   11     223345666777777665   1                                               


Q ss_pred             ----------------CCCCCcccchh---------------hhhhhcCCcCCCcCc-c-------------------cc
Q psy10938        133 ----------------LIPGHPGKVAS---------------VCDVSALQPADNSTV-A-------------------TC  161 (314)
Q Consensus       133 ----------------l~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~-------------------~~  161 (314)
                                      ..++.+++++.               ..+..++++...... .                   ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~  245 (396)
T TIGR00882       166 WLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSF  245 (396)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                            11111111000               000011100000000 0                   01


Q ss_pred             c---CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhc
Q psy10938        162 S---GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCI  238 (314)
Q Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (314)
                      .   +......+.......+...++....+++.||+|+|+.+..+..+.++...+....++.+......++.+.+.....
T Consensus       246 ~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  325 (396)
T TIGR00882       246 FATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLL  325 (396)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            1   2223345566667777888888999999999999999988888877777766666666665555555555544444


Q ss_pred             hhheeeecccccchhhHHHHHH-HHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        239 SVVYCIMVDLFPTNLRVLAAAL-SSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       239 ~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      .....+..+..|++.+++..+. .+....+|+.++|.+.|.+.|..| ...+.+.+++.++..++..
T Consensus       326 ~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       326 VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            4455567777888888887766 567888999999999999999877 5667777776666555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.83  E-value=6.8e-19  Score=155.41  Aligned_cols=264  Identities=13%  Similarity=0.011  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  113 (314)
                      .+..+........+.|.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||+++..+..++.++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            44555677778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcccC--------------C-----------------------------------------------
Q psy10938        114 QYYGVFLALRFINGFASR--------------P-----------------------------------------------  132 (314)
Q Consensus       114 ~~~~~l~~~r~l~G~~~~--------------P-----------------------------------------------  132 (314)
                      +|++.++++|+++|++.+              |                                               
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~  181 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL  181 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999877              1                                               


Q ss_pred             ---------CCCCCcccch--hh-------hhhhcCCcCCCcCcc--------------------cccCCCChhHHHHHH
Q psy10938        133 ---------LIPGHPGKVA--SV-------CDVSALQPADNSTVA--------------------TCSGEVNPEVFSHTL  174 (314)
Q Consensus       133 ---------l~~~~~~~~~--~~-------~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~  174 (314)
                               +++.++++++  ..       .+..+++........                    +..+.+..+.++...
T Consensus       182 i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~  261 (413)
T PRK15403        182 IAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQV  261 (413)
T ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHH
Confidence                     1221111110  00       011111100000000                    233556666666666


Q ss_pred             HHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----Hhcchh-HHHHHHHHHHHhhhhhchhheeeecccc
Q psy10938        175 IIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY----YVQTST-QNLILSCIFEALTGCCISVVYCIMVDLF  249 (314)
Q Consensus       175 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      ....+..++..+.+.+.+|..+++.......+..++.+++.    ..++.+ ..+...++.+++.+...+......-+. 
T Consensus       262 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-  340 (413)
T PRK15403        262 PVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-  340 (413)
T ss_pred             HHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-
Confidence            66667777777777665443333332222222222222211    122322 234455556666677766666322221 


Q ss_pred             cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy10938        250 PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIA  298 (314)
Q Consensus       250 p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~  298 (314)
                      .+..+|++.++.+.....+...++...|++.+.....++...+.+..+.
T Consensus       341 ~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        341 NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI  389 (413)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            1223699999999999999999999999988886666666555554443

>KOG0255|consensus

Probab=99.83  E-value=9.2e-19  Score=159.35  Aligned_cols=258  Identities=22%  Similarity=0.290  Sum_probs=190.4

Q ss_pred             cccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCC---
Q psy10938         56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRP---  132 (314)
Q Consensus        56 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~P---  132 (314)
                      +.+..+.....+..+++++|..+|++++|+++||+|||++++.+.++..++.+..++++|++.+++.|++.|++.++   
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            44556777889999999999999999999999999999999999999999999999999999999999999999981   


Q ss_pred             --------------------------------------------------------------CC---------CCCcc-c
Q psy10938        133 --------------------------------------------------------------LI---------PGHPG-K  140 (314)
Q Consensus       133 --------------------------------------------------------------l~---------~~~~~-~  140 (314)
                                                                                    +.         +.+.+ .
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a  270 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEA  270 (521)
T ss_pred             HhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHH
Confidence                                                                          00         00000 0


Q ss_pred             chhhhhhh-------------------cCCcCCCcCc--c--------------------------------cccCCCCh
Q psy10938        141 VASVCDVS-------------------ALQPADNSTV--A--------------------------------TCSGEVNP  167 (314)
Q Consensus       141 ~~~~~~~~-------------------~~~~~~~~~~--~--------------------------------~~~~~~~~  167 (314)
                      .+..++..                   +..+.....+  .                                ......+.
T Consensus       271 ~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~  350 (521)
T KOG0255|consen  271 IKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGG  350 (521)
T ss_pred             HHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCc
Confidence            00000000                   0000000000  0                                11222344


Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHhhhhhchhheee
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTST---QNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +.+......+.....+....+...|+.|||.....+..+..++++...+.....   .......+..++.+..+...+.+
T Consensus       351 ~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
T KOG0255|consen  351 NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLY  430 (521)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666667888888889999999999999999999999999988876543   35555666667778888888999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhcccCCCCCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFS-MFLPATGKKEL  313 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  313 (314)
                      ..|++|+..|..+.+..+....++++++|.+.-..........+..++....+.+.+. .++||++++.+
T Consensus       431 ~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  431 SAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence            9999999999999999999999999999999854444222333333565655656555 67799998765

>KOG2504|consensus

Probab=99.82  E-value=1.1e-19  Score=162.25  Aligned_cols=286  Identities=20%  Similarity=0.197  Sum_probs=229.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHH
Q psy10938         21 GYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL  100 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  100 (314)
                      +.+.+.|.+++..++......-....++.+.+.++++++.+..+++|+.++....+.+..|+.+.+.||||.|.+.++|.
T Consensus        39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~  118 (509)
T KOG2504|consen   39 PDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG  118 (509)
T ss_pred             CCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence            35667788888887877776666677788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhhHHHHHHHHH-HHhhcccC----C-------------------------------------------
Q psy10938        101 LVDGLCGIASSVAQYYGVFLALR-FINGFASR----P-------------------------------------------  132 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~~----P-------------------------------------------  132 (314)
                      ++..++.++..+++++|++++.. ++.|+|.+    |                                           
T Consensus       119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            99999999999999999998876 89999999    2                                           


Q ss_pred             ---------------------CCC----C-------------------------Ccccchhhh--------hhhcCCcCC
Q psy10938        133 ---------------------LIP----G-------------------------HPGKVASVC--------DVSALQPAD  154 (314)
Q Consensus       133 ---------------------l~~----~-------------------------~~~~~~~~~--------~~~~~~~~~  154 (314)
                                           +++    .                         .++.+....        +..+.+++.
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKW  278 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccc
Confidence                                 011    0                         000000000        000000000


Q ss_pred             C------cCc----c--------------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHH
Q psy10938        155 N------STV----A--------------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH  192 (314)
Q Consensus       155 ~------~~~----~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  192 (314)
                      .      ...    .                                ...+....++....++.++..++++++.|++.|
T Consensus       279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD  358 (509)
T KOG2504|consen  279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD  358 (509)
T ss_pred             cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC
Confidence            0      000    0                                456778889999999999999999999999999


Q ss_pred             Hhh--hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhh
Q psy10938        193 KMG--AKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGL  270 (314)
Q Consensus       193 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~  270 (314)
                      +..  +++...++.+..+++.+...+..+.+.......+++++.+.........+.|+.+.+.-..+.|+...+..++..
T Consensus       359 ~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l  438 (509)
T KOG2504|consen  359 KPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL  438 (509)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence            987  566777788888888888888888888888888899888888888888999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhcc
Q psy10938        271 TGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSMFLP  306 (314)
Q Consensus       271 ~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~  306 (314)
                      ++|++.|.+.|..+  ...|+..+...++++.+.+..+
T Consensus       439 ~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  439 VGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999887  4567777777777776665544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.82  E-value=4.8e-18  Score=148.07  Aligned_cols=251  Identities=21%  Similarity=0.214  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccc-hhHHHHHHHHHHHHHhHHHHh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-RKITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~  112 (314)
                      +..+++.+.....+.|..|.+.++.|.|..|+|.+.+...+...++++++|.++||++ +||++.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666667778888899999999999999999999999999999999999986 677887877877777777777


Q ss_pred             hhHHHHHHHHHHHhhcccCC------------------------------------------------------------
Q psy10938        113 AQYYGVFLALRFINGFASRP------------------------------------------------------------  132 (314)
Q Consensus       113 ~~~~~~l~~~r~l~G~~~~P------------------------------------------------------------  132 (314)
                      .++++.++..-++..+...|                                                            
T Consensus        88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  167 (400)
T PF03825_consen   88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAI  167 (400)
T ss_pred             hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence            88888888877777776663                                                            


Q ss_pred             -----------CCCCCccc--chhhhh--------hhcCCcCCCcCcc-------------------cccC-CCChhHHH
Q psy10938        133 -----------LIPGHPGK--VASVCD--------VSALQPADNSTVA-------------------TCSG-EVNPEVFS  171 (314)
Q Consensus       133 -----------l~~~~~~~--~~~~~~--------~~~~~~~~~~~~~-------------------~~~~-~~~~~~~~  171 (314)
                                 +++.++++  +++.++        .+++++.......                   ++.+ .+....+.
T Consensus       168 ~~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~  247 (400)
T PF03825_consen  168 LSLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGI  247 (400)
T ss_pred             HHHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence                       11111000  000000        1111000000000                   2333 45566666


Q ss_pred             HHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHH----HHHHhhhhhchhheeeec
Q psy10938        172 HTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-TSTQNLILSC----IFEALTGCCISVVYCIMV  246 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  246 (314)
                      ..++..+.+++.-...+++.+|+|.++++.++.+..++-..++.... +.+.......    +-+...+..+.....++.
T Consensus       248 ~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~  327 (400)
T PF03825_consen  248 LWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYID  327 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            67788889999999999999999999999999999999998888873 3333333333    356677777888889999


Q ss_pred             ccccchhhHHHHHHHHhhh-hhhhhhHHHHHHHHHhhhh
Q psy10938        247 DLFPTNLRVLAAALSSTFG-RFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~-~~g~~~~p~~~g~l~~~~~  284 (314)
                      +..|++.|++++++++... .+|..+|..++|++.|+.+
T Consensus       328 ~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  328 RIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999875 5999999999999999876

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.1e-18  Score=146.05  Aligned_cols=267  Identities=12%  Similarity=0.112  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh
Q psy10938         28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  107 (314)
                      ..+..+....++-++......+++|.+++.|+++..|.+++...++.+|.+.+++.|.+.+|+|+|+.++.++.++.++.
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44555555666777777888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH---hhhHHHHHHHHHHHhhcccC-------C-------------------------------------C-------
Q psy10938        108 IASS---VAQYYGVFLALRFINGFASR-------P-------------------------------------L-------  133 (314)
Q Consensus       108 ~~~~---~~~~~~~l~~~r~l~G~~~~-------P-------------------------------------l-------  133 (314)
                      .++.   ...+|..++.+-|+.|.|.+       |                                     +       
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            9985   66789999999999999999       2                                     0       


Q ss_pred             -----------------------------------CCCCcccchhh-----------hhhhcCCcCCCcCcc--------
Q psy10938        134 -----------------------------------IPGHPGKVASV-----------CDVSALQPADNSTVA--------  159 (314)
Q Consensus       134 -----------------------------------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--------  159 (314)
                                                         ..+.|+.+...           .+.++++..+.-...        
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E  252 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAE  252 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHH
Confidence                                               01111111100           011110000000000        


Q ss_pred             ------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy10938        160 ------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILS  227 (314)
Q Consensus       160 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (314)
                                  +..+....++....+..+.+.++|++++.++..|+...+.+....+...+.++...+.++.+. +...
T Consensus       253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~l  331 (422)
T COG0738         253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYAL  331 (422)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHH
Confidence                        335667788889999999999999999999999999999999988888888888888877544 4455


Q ss_pred             HHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q psy10938        228 CIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLI  297 (314)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~  297 (314)
                      .+.+++.+..+|..++...+..| ++ ....|....+..+|+++.|++.|++.|..+ ...+.....++.+
T Consensus       332 ~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         332 FLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            66788999999999999999998 33 344455666777999999999999999988 3333333333333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.79  E-value=1.6e-17  Score=149.60  Aligned_cols=276  Identities=14%  Similarity=0.042  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhccccc-----chhHH-HHHHHHHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKIT-LIGALLVD  103 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~  103 (314)
                      ....+..++..+.......+.+|.+.++.|.|.+++|.+ +.....+ ++++++|+++||+     ||||. +..+.+..
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            334445556667777788888999999999999999997 4444444 6899999999999     99885 66777777


Q ss_pred             HHHhHHHHhh---hHHHHHHHHHHHhhcccC--------------C----------------------------------
Q psy10938        104 GLCGIASSVA---QYYGVFLALRFINGFASR--------------P----------------------------------  132 (314)
Q Consensus       104 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~--------------P----------------------------------  132 (314)
                      .++....++.   ++++.+.+.+++.|++.+              |                                  
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777777664   478889999999998887              1                                  


Q ss_pred             ----------------------CCCCCcc--cch--------hhhhhhcCCcCCCcCcc--------------------c
Q psy10938        133 ----------------------LIPGHPG--KVA--------SVCDVSALQPADNSTVA--------------------T  160 (314)
Q Consensus       133 ----------------------l~~~~~~--~~~--------~~~~~~~~~~~~~~~~~--------------------~  160 (314)
                                            +++..++  +++        +..+.++.+........                    +
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~  251 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIR  251 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  1111100  000        01111111000000000                    2


Q ss_pred             ccCCCChhHHHHH-HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhc-chhHHHHHHHHHHHhhh
Q psy10938        161 CSGEVNPEVFSHT-LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQ-TSTQNLILSCIFEALTG  235 (314)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~  235 (314)
                      ..+.+..+.+... ....++.++|.+++|++.||+|+|+.+..+..+..+..+.+   .... +.+......++..++.+
T Consensus       252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g  331 (491)
T PRK11010        252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG  331 (491)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            3566777777766 45567899999999999999999887766555444433222   2222 22222223333333444


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhccc
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      ...+..+++..+..|++.+++..|+.+....+|..+++.+.|.+.|..|+ ..|.+.+++.+.+.+....+++
T Consensus       332 ~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        332 MGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44565677888888888899999999999999999999999999998874 4455666666666666655544

>KOG2615|consensus

Probab=99.78  E-value=3.3e-18  Score=141.58  Aligned_cols=226  Identities=19%  Similarity=0.229  Sum_probs=164.6

Q ss_pred             cccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC------
Q psy10938         58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR------  131 (314)
Q Consensus        58 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~------  131 (314)
                      -+.+..-.|.+.|.+.+...+.++.+|.++||+|||++++.|+....++..+.+.++|+..++++|++.|+..|      
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r  142 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR  142 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Confidence            33455667999999999999999999999999999999999999999999999999999777778999999999      


Q ss_pred             ------------------------------C---------------------------------------CCCCCc----
Q psy10938        132 ------------------------------P---------------------------------------LIPGHP----  138 (314)
Q Consensus       132 ------------------------------P---------------------------------------l~~~~~----  138 (314)
                                                    |                                       +++.-+    
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~  222 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR  222 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence                                          1                                       111111    


Q ss_pred             -ccchhhhhhhcCCc----CC---------C--cCc--c----------------------------cccCCCChhHHHH
Q psy10938        139 -GKVASVCDVSALQP----AD---------N--STV--A----------------------------TCSGEVNPEVFSH  172 (314)
Q Consensus       139 -~~~~~~~~~~~~~~----~~---------~--~~~--~----------------------------~~~~~~~~~~~~~  172 (314)
                       +++....|..+..+    ..         .  ...  .                            ...++++.+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~v  302 (451)
T KOG2615|consen  223 NDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKV  302 (451)
T ss_pred             cccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheee
Confidence             11111111111100    00         0  000  0                            2335666777777


Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMG--AKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      ....++.+.+.+.......||..  -+-.+.....++.-.++++.....+........+..+......+..........|
T Consensus       303 l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~  382 (451)
T KOG2615|consen  303 LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGP  382 (451)
T ss_pred             eehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence            77776666666666666666654  4445555555555566666666666666777777777778888888999999999


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      ++.||+..|+..+.+.++.++||.+.|.+....
T Consensus       383 ~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws  415 (451)
T KOG2615|consen  383 QSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS  415 (451)
T ss_pred             cccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence            999999999999999999999999999888764

>KOG4686|consensus

Probab=99.77  E-value=2e-18  Score=137.50  Aligned_cols=278  Identities=14%  Similarity=0.094  Sum_probs=191.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDG  104 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~  104 (314)
                      |...+...|+..+-+++.....+.+..++..|.+++.++..++.|.|.+...+.+.+.|++.|| +|-|..-++-+....
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            3445555555556666666677777888899999999999999999999999999999999995 788876666666666


Q ss_pred             HHhHHHH---hhhHHHHHHHHHHHhhcccC--------------------------------------------------
Q psy10938        105 LCGIASS---VAQYYGVFLALRFINGFASR--------------------------------------------------  131 (314)
Q Consensus       105 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~--------------------------------------------------  131 (314)
                      ++.++++   ..+.+|++..+||+.|+|.-                                                  
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            7777665   47899999999999999976                                                  


Q ss_pred             --C-----------------------------CCCCCcc-----cchhhhhhhcCCcCCCcCcc----------------
Q psy10938        132 --P-----------------------------LIPGHPG-----KVASVCDVSALQPADNSTVA----------------  159 (314)
Q Consensus       132 --P-----------------------------l~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------------  159 (314)
                        |                             +.+++.+     ++....+..+....+...+.                
T Consensus       202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~f  281 (459)
T KOG4686|consen  202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWF  281 (459)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHH
Confidence              0                             0000000     00000000000000000000                


Q ss_pred             -----------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHhcchhHHHHHH
Q psy10938        160 -----------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSG-VAMALYYVQTSTQNLILS  227 (314)
Q Consensus       160 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  227 (314)
                                 +..+.++..++.+.+.......+...+.|.++||+|++...+.+..+..+ +-..+.+.  .+..+...
T Consensus       282 PFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m  359 (459)
T KOG4686|consen  282 PFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSM  359 (459)
T ss_pred             HHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHH
Confidence                       45577788888777777777888888999999999999776655544433 33333332  23334455


Q ss_pred             HHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHH
Q psy10938        228 CIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-----ILICTLAAMLLIAGVFS  302 (314)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-----~~~~~~~~~~~~~~~~~  302 (314)
                      .+.|..........+..++.++|++..|+++|..+.+.++|-++.|++.|.+.|..+.     ..|...+.+.+....+.
T Consensus       360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil  439 (459)
T KOG4686|consen  360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL  439 (459)
T ss_pred             HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            5566555665666788888999999999999999999999999999999999998662     22344455555554444


Q ss_pred             Hhc
Q psy10938        303 MFL  305 (314)
Q Consensus       303 ~~~  305 (314)
                      +.+
T Consensus       440 ~~~  442 (459)
T KOG4686|consen  440 FYL  442 (459)
T ss_pred             hhe
Confidence            444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.76  E-value=5.6e-17  Score=160.83  Aligned_cols=236  Identities=15%  Similarity=0.007  Sum_probs=169.3

Q ss_pred             HHHhhcccccccccccc--chhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHH---hhhHHHHHH
Q psy10938         46 VLSFVLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---VAQYYGVFL  120 (314)
Q Consensus        46 ~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~  120 (314)
                      ....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++.+.++..++.++..   .+++++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  107 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF  107 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            33444455555566554  3479999999999999999999999999999999998877665555443   457899999


Q ss_pred             HHHHHhhcccC---C---------------------------------------C-CC----------------------
Q psy10938        121 ALRFINGFASR---P---------------------------------------L-IP----------------------  135 (314)
Q Consensus       121 ~~r~l~G~~~~---P---------------------------------------l-~~----------------------  135 (314)
                      +.|+++|++.+   |                                       + ..                      
T Consensus       108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (1146)
T PRK08633        108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA  187 (1146)
T ss_pred             HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence            99999999888   1                                       0 00                      


Q ss_pred             --------------CCcccch--------hhh---hhhcCCcCCCc-Ccc-----------------------cccCCCC
Q psy10938        136 --------------GHPGKVA--------SVC---DVSALQPADNS-TVA-----------------------TCSGEVN  166 (314)
Q Consensus       136 --------------~~~~~~~--------~~~---~~~~~~~~~~~-~~~-----------------------~~~~~~~  166 (314)
                                    ..+....        ...   +..+....... ...                       ...+.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  267 (1146)
T PRK08633        188 VAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDN  267 (1146)
T ss_pred             HHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc
Confidence                          0000000        000   00000000000 000                       2345555


Q ss_pred             h-hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        167 P-EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      . ..++......++.+++.++.+++.||+++++.+.++.++.+++.+++.+..+.+..++..++.+++.+...+...+++
T Consensus       268 ~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (1146)
T PRK08633        268 TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALI  347 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6 677888888899999999999999999998888888777777777777666666666667777777787788888999


Q ss_pred             cccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        246 VDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       246 ~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      .+..|++.|++++|+.+.+.++|..+++.+.+.+..
T Consensus       348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888766654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.1e-16  Score=132.14  Aligned_cols=275  Identities=20%  Similarity=0.182  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q psy10938         27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (314)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  106 (314)
                      +..+..+.+..+-.--..+..+|+++++++|+|+|.+..|+++++..+...+.+++..++++|+|.++.+..++++..++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333333444444445677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHHhhcccC------C------------------------------------------------
Q psy10938        107 GIASSVAQYYGVFLALRFINGFASR------P------------------------------------------------  132 (314)
Q Consensus       107 ~~~~~~~~~~~~l~~~r~l~G~~~~------P------------------------------------------------  132 (314)
                      .++-... +.+.++.+-.+.|.|.+      |                                                
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            9998877 67778888888888888      2                                                


Q ss_pred             -------------CCCCCcccchhh-------hhhhcCCcCCCcCcc-------------------cccCCCChhHHHHH
Q psy10938        133 -------------LIPGHPGKVASV-------CDVSALQPADNSTVA-------------------TCSGEVNPEVFSHT  173 (314)
Q Consensus       133 -------------l~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~  173 (314)
                                   ++....+...+.       .+.++++........                   .+.+.+..+++...
T Consensus       170 ~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~ll  249 (395)
T COG2807         170 FWALLALLALLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLL  249 (395)
T ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHH
Confidence                         111000000000       001111100000000                   57789999999999


Q ss_pred             HHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccc-
Q psy10938        174 LIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPT-  251 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-  251 (314)
                      +...+.+++..+....+.+|. ++|+.......++.+..+.+.+.+....... .++.|++.+.+++.....+.+..++ 
T Consensus       250 sl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a  328 (395)
T COG2807         250 SLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDA  328 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCCh
Confidence            999999999999999999975 4666667777777777777777776555444 5788889999999998888877654 


Q ss_pred             hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH
Q psy10938        252 NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       252 ~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~  303 (314)
                      +..++-.|+.+.++++-..+||++.|++.|..|  ...+..++...++..+.-+
T Consensus       329 ~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         329 AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            556888899999999999999999999999987  3334444444444444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.75  E-value=8.6e-17  Score=143.36  Aligned_cols=236  Identities=13%  Similarity=0.075  Sum_probs=161.7

Q ss_pred             hhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc----cchhH-HHHHHHHHHHHHhHHHHhhhH------HH
Q psy10938         49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKI-TLIGALLVDGLCGIASSVAQY------YG  117 (314)
Q Consensus        49 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~  117 (314)
                      .+.+.+.+++|+++.++|++.++..+..++.+|+.|+++||    +|||| .++.+....+++.+++.+.++      ..
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34566777899999999999999999999999999999997    67745 577788888888777776553      44


Q ss_pred             HHHHHHHHhhcccC----C-------------------------------------------------------------
Q psy10938        118 VFLALRFINGFASR----P-------------------------------------------------------------  132 (314)
Q Consensus       118 ~l~~~r~l~G~~~~----P-------------------------------------------------------------  132 (314)
                      .+++.+++.+++.+    |                                                             
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            55666677666544    1                                                             


Q ss_pred             -------------CCCCCcc-cc-----hhhhhhhcCCcCCCcCcc-----------------------cccCCCChhHH
Q psy10938        133 -------------LIPGHPG-KV-----ASVCDVSALQPADNSTVA-----------------------TCSGEVNPEVF  170 (314)
Q Consensus       133 -------------l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~  170 (314)
                                   +++++++ +.     .+..+..+...+++....                       ..........+
T Consensus       181 ~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFS  260 (437)
T ss_pred             HHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHH
Confidence                         0111000 00     000000000000000000                       11111234445


Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhchhheeeecccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-TSTQNLILSCIFEALTGCCISVVYCIMVDLF  249 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      .......++.+++.++.+++.||+|+|+.+..+..+..++.+...+.+ +.+......++.+++.+...+..++..+|..
T Consensus       261 ~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (437)
T TIGR00792       261 YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTV  340 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            556667888899999999999999999999888888777776665544 3344445556667777777788888888876


Q ss_pred             c-------chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        250 P-------TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       250 p-------~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      |       ++.+|++.|+.+....+|..+++.+.|.+.+..|
T Consensus       341 ~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       341 DYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5       4567999999999999999999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.74  E-value=2.6e-16  Score=135.20  Aligned_cols=144  Identities=12%  Similarity=0.046  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      ...+...+...+.+++...+..++.+|+|.|+.+.++..++.+-.....+.++++.....-.+-+.-.........-|+.
T Consensus       259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~  338 (412)
T PF01306_consen  259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYIT  338 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777889999999999999999999999999999999999999999998888888888777788888889999


Q ss_pred             ccccchhhHHHHHHH-HhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc-ccCCC
Q psy10938        247 DLFPTNLRVLAAALS-STFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL-PATGK  310 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~-~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~  310 (314)
                      +.+|++..++.+.+. +...++|.++.+.+.|.+.|+.| ...+++.+.+.+...++..+. +++++
T Consensus       339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            999999999999996 56667999999999999999998 567888888877777766554 44333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.74  E-value=4e-16  Score=139.93  Aligned_cols=275  Identities=10%  Similarity=-0.016  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccc-cc--cccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQ-CD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGL  105 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~  105 (314)
                      +..+....+.+.+..+...+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++..+..+.++
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            33444556666666666666666654 44  89999999999999999999999999999999 8999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC---C--------------------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR---P--------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~---P--------------------------------------------------  132 (314)
                      +.++.+++++++.+.+.|++.|++.|   |                                                  
T Consensus        92 g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~  171 (475)
T TIGR00924        92 GHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH  171 (475)
T ss_pred             HHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            99999999999999999999999987   1                                                  


Q ss_pred             -------------------CCC---CCc-ccc---hhhhhh---------------------------------------
Q psy10938        133 -------------------LIP---GHP-GKV---ASVCDV---------------------------------------  147 (314)
Q Consensus       133 -------------------l~~---~~~-~~~---~~~~~~---------------------------------------  147 (314)
                                         .++   +.+ +++   ++..+.                                       
T Consensus       172 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (475)
T TIGR00924       172 VGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVI  251 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence                               011   000 000   000000                                       


Q ss_pred             ------hcCCcCC---CcCc-c---------------------------cccCCC----ChhHHHHHHHHHhhhhhHHhH
Q psy10938        148 ------SALQPAD---NSTV-A---------------------------TCSGEV----NPEVFSHTLIIGLACIPSSLA  186 (314)
Q Consensus       148 ------~~~~~~~---~~~~-~---------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~  186 (314)
                            ..++...   +.+. .                           +..+..    ........++..+..++...+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~  331 (475)
T TIGR00924       252 IFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPV  331 (475)
T ss_pred             HHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHH
Confidence                  0000000   0000 0                           011111    112445556666666665555


Q ss_pred             HHHHHHHhhhH-----HH--HHHHHHHHHHHHHHHHH---------hcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        187 MPLLVHKMGAK-----WF--LVAGLVLSSGVAMALYY---------VQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       187 ~g~l~d~~g~~-----~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      ..++-.|.+||     ..  +..+.++.+++++...+         ..+.+..+...++.+++.....|..+++..|..|
T Consensus       332 ~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP  411 (475)
T TIGR00924       332 LAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP  411 (475)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence            44443444432     22  35677777777666653         2466667778888899999999999999999999


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ++.||+++|+......+|..+++.+.....+..+ ...+...++..++..++.++
T Consensus       412 ~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       412 QRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887766654 33344445544444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2532|consensus

Probab=99.74  E-value=2.3e-16  Score=139.33  Aligned_cols=250  Identities=18%  Similarity=0.257  Sum_probs=180.2

Q ss_pred             ccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhH--HHHHHHHHHHhhcccC-
Q psy10938         55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YGVFLALRFINGFASR-  131 (314)
Q Consensus        55 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~-  131 (314)
                      ..++++|+.+.+++.+.+++|+.+++++.|+++||+|.|+++..+.++.++++++...+.+  ++.+++.|+++|++.| 
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            3468899999999999999999999999999999999999999999999999999988754  4577899999999999 


Q ss_pred             -------------C--------------------------------------------------------CCCCCcccch
Q psy10938        132 -------------P--------------------------------------------------------LIPGHPGKVA  142 (314)
Q Consensus       132 -------------P--------------------------------------------------------l~~~~~~~~~  142 (314)
                                   |                                                        +..++|++++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence                         2                                                        1222222221


Q ss_pred             -----hhhhhhcCCcCCCcC-----cc-----------------------------------cccCCCChhHHHHHHHHH
Q psy10938        143 -----SVCDVSALQPADNST-----VA-----------------------------------TCSGEVNPEVFSHTLIIG  177 (314)
Q Consensus       143 -----~~~~~~~~~~~~~~~-----~~-----------------------------------~~~~~~~~~~~~~~~~~~  177 (314)
                           +.+...+.+.....+     +-                                   +..+.+..+.++..++..
T Consensus       225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF  304 (466)
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence                 111111111111111     10                                   456888899999999999


Q ss_pred             hhhhhHHhHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHhhhhhchhheeeec
Q psy10938        178 LACIPSSLAMPLLVHKMGA---------KWFLVAGLVLSSGVAMALYYVQTSTQ--NLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       178 ~~~~~~~~~~g~l~d~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      +...+..+++|.++||..+         |..-.++....+++++.+.+.+....  .+.+..+.....+...+-.+....
T Consensus       305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~  384 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ  384 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence            9999999999999998743         45556777777788888877774333  233333333333443344444444


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh-h--hh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID-G--HC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~-~--~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +.. +++.+..+|+.+....+.++++|.+.|.+.+ .  .. ...|++.+++.+++.++..+.
T Consensus       385 ~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  385 DIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             hcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            444 4677999999999999999999999999994 2  12 456777777777777655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.73  E-value=1.9e-16  Score=156.87  Aligned_cols=253  Identities=13%  Similarity=0.033  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-cccccccccccc-chhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHH---HHHHHHH
Q psy10938         31 IFGGLLYAYAAISITVLSFV-LPSAQCDFGMTS-SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG---ALLVDGL  105 (314)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~  105 (314)
                      ...++..+.+++....+..+ ...+..+.+.+. ...++..+++.+.+.+.++++|+++||+|||+++..   ..+....
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            33344555555554444333 334555554443 457888999999999999999999999999997533   2223333


Q ss_pred             HhHHHHhhhHHHHHHHHHHHhhcccC---C--------------------------------------------------
Q psy10938        106 CGIASSVAQYYGVFLALRFINGFASR---P--------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~l~~~r~l~G~~~~---P--------------------------------------------------  132 (314)
                      ..+.....+|+++++++|+++|++.+   |                                                  
T Consensus        98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            33333445899999999999999988   2                                                  


Q ss_pred             ----------------CCCCCcccch-----h-hhh---hhcCCcCCCcCcc------------------------cccC
Q psy10938        133 ----------------LIPGHPGKVA-----S-VCD---VSALQPADNSTVA------------------------TCSG  163 (314)
Q Consensus       133 ----------------l~~~~~~~~~-----~-~~~---~~~~~~~~~~~~~------------------------~~~~  163 (314)
                                      +++..+++..     . ..+   .++..........                        ...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g  257 (1140)
T PRK06814        178 ALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLG  257 (1140)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence                            1111111000     0 000   0010000000000                        2345


Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------------------cchhHH
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV--------------------QTSTQN  223 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~  223 (314)
                      .+....+...+...++.++|.++.+++.|+..+++.+..+.++.+++.+.+.+.                    ++.+..
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI  337 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHH
Confidence            667778888899999999999999999988776655554444444444333332                    444555


Q ss_pred             HHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        224 LILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .+..++.+++.+...+...+.+.+..|++.||+++|+.+....++..+++++.|.+.+..
T Consensus       338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~  397 (1140)
T PRK06814        338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG  397 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556666777788888888999999999999999999999999999999999999998643

>KOG3764|consensus

Probab=99.72  E-value=7.3e-17  Score=134.45  Aligned_cols=248  Identities=16%  Similarity=0.083  Sum_probs=170.2

Q ss_pred             cccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC----
Q psy10938         56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR----  131 (314)
Q Consensus        56 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~----  131 (314)
                      ++.+-++.++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.++++++++.|.+||+|.+    
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            3456677899999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             ----------C---------------------------------------------------------CCC--CC---cc
Q psy10938        132 ----------P---------------------------------------------------------LIP--GH---PG  139 (314)
Q Consensus       132 ----------P---------------------------------------------------------l~~--~~---~~  139 (314)
                                |                                                         ++.  .+   .+
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~  258 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE  258 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc
Confidence                      1                                                         121  11   11


Q ss_pred             cchhhhhhhcCCcCCCcC--------------cc------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh--hH
Q psy10938        140 KVASVCDVSALQPADNST--------------VA------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG--AK  197 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~  197 (314)
                      +..+..++.+.+......              ++      +.......+.++......+...++..+.|.+.||++  |.
T Consensus       259 ~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  259 QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence            222233333332211100              00      122222335666666677888899999999999999  54


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc---ch---hhHHHHHHHHhhhhhhhhh
Q psy10938        198 WFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP---TN---LRVLAAALSSTFGRFGGLT  271 (314)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~---~r~~~~g~~~~~~~~g~~~  271 (314)
                      .....+.+..+.++....+.++....++-.+..++..+...........+++.   .+   ..|..+++......+|.++
T Consensus       339 l~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~  418 (464)
T KOG3764|consen  339 LLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI  418 (464)
T ss_pred             HHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc
Confidence            44455556666666666676665555444444444444443333333333332   23   5688999999999999999


Q ss_pred             HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        272 GNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       272 ~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      ||.++|.+.+..| .....+.+...++-+-++.
T Consensus       419 GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  419 GPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             cccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988 3344444444444443333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.72  E-value=1.5e-15  Score=133.29  Aligned_cols=271  Identities=15%  Similarity=0.074  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHH--hHhhHHHHHHhhhhhh-hcccccchhHHHHHHHHHH-HH
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL--NAAPMLGMVFGSYFWG-CLADTQGRKITLIGALLVD-GL  105 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~-~~  105 (314)
                      ...++..++..+.......|.+|.+.+|.|.|.+++|++  .++..+...+.+++++ +..||+||||..++...+. ..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455667788888888889999999999999999999997  4677888888888884 5799999999865554332 21


Q ss_pred             HhHHHH---hhhH-HHHHHHHHHHhhcccC---C----------------------------------------------
Q psy10938        106 CGIASS---VAQY-YGVFLALRFINGFASR---P----------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~---~~~~-~~~l~~~r~l~G~~~~---P----------------------------------------------  132 (314)
                      ......   ...+ ..+++...++.++..+   |                                              
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            111111   1222 2233333333333333   0                                              


Q ss_pred             --------------------CCCCCccc-c---hh---hhhhhcCCcCCCcCcc-------------------cccCCCC
Q psy10938        133 --------------------LIPGHPGK-V---AS---VCDVSALQPADNSTVA-------------------TCSGEVN  166 (314)
Q Consensus       133 --------------------l~~~~~~~-~---~~---~~~~~~~~~~~~~~~~-------------------~~~~~~~  166 (314)
                                          +.++++++ +   ..   ..+..+++........                   .+.+.+.
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~  242 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPL  242 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCH
Confidence                                11211111 0   00   1112221110000000                   3456777


Q ss_pred             hhHHHHHHHHHh-hhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHhhhhhch
Q psy10938        167 PEVFSHTLIIGL-ACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV------QTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       167 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      .+.+........ ..+++.++.|++.||+|+|+.+..+..+..+..+.....      ++.........+.++..+...+
T Consensus       243 ~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (390)
T TIGR02718       243 EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSV  322 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            777777776654 566788999999999999998887766553332222211      1122222222333445566666


Q ss_pred             hheeeecccccc-hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHH
Q psy10938        240 VVYCIMVDLFPT-NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICTLAAMLLIAGV  300 (314)
Q Consensus       240 ~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~~~~~~~~~~~  300 (314)
                      ..+....+..++ +.+++.+++.+...++|..++|.+.|.+.|..|. ..+...+.+.+++.+
T Consensus       323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       323 AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            666676666665 8899999999999999999999999999998884 556555555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.71  E-value=1.7e-15  Score=133.62  Aligned_cols=267  Identities=15%  Similarity=0.055  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhccccc-----chhH-HHHHHHHHHHHHh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKI-TLIGALLVDGLCG  107 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~  107 (314)
                      ...++..+.........+|.+.++.|+|.+++|++..+...  .+.++++|+++||+     |||| .+..+..+.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34556666767777788999999999999999999777775  59999999999999     8775 7888888888777


Q ss_pred             HHHHhh---hHHHHHHHHHHHhhcccC--------------C--------------------------------------
Q psy10938        108 IASSVA---QYYGVFLALRFINGFASR--------------P--------------------------------------  132 (314)
Q Consensus       108 ~~~~~~---~~~~~l~~~r~l~G~~~~--------------P--------------------------------------  132 (314)
                      ...++.   .+++.+++..++.+...+              |                                      
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            777776   457777777777776555              1                                      


Q ss_pred             ------------------CCCCCccc--chh--------hhhhhcCCcCCCcCcc--------------------cccCC
Q psy10938        133 ------------------LIPGHPGK--VAS--------VCDVSALQPADNSTVA--------------------TCSGE  164 (314)
Q Consensus       133 ------------------l~~~~~~~--~~~--------~~~~~~~~~~~~~~~~--------------------~~~~~  164 (314)
                                        ++++++++  +++        ..+..+++........                    +..+.
T Consensus       163 ~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~  242 (402)
T PRK11902        163 TYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGF  242 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence                              11111110  000        1111111110000000                    23455


Q ss_pred             CChhHHHHHHHHH-hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhc-chhHHHHHHH----HHHHhhh
Q psy10938        165 VNPEVFSHTLIIG-LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQ-TSTQNLILSC----IFEALTG  235 (314)
Q Consensus       165 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~----~~~~~~~  235 (314)
                      +..+.+......+ ++.+++.++++++.||+++|+.+..+..+..+..+.+   ...+ +.+.......    ..++..+
T Consensus       243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (402)
T PRK11902        243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTA  322 (402)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            5556666554443 4578899999999999999988776666555444333   2333 3333333322    3344455


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHhcc
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLI-LICTLAAMLLIAGVFSMFLP  306 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  306 (314)
                      ...+....++.+.+|.+.+    ++.+....++...++.+.|.+.|..|+. .+...+.+.+++.++....+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        323 AFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566677788888776554    5555556677776777899999998844 45555666666555554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=128.61  Aligned_cols=153  Identities=17%  Similarity=0.224  Sum_probs=130.6

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhch
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      ...+.+..+..+......+..++|+++.|++.||+|.|+++..+.++..+.++...+............+.+.+.+..++
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            35677888888999999999999999999999999999999999998888888888887777777888889999999999


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSMFLPATGKKE  312 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (314)
                      ..-++.++++|+++.++.+|+++..++..+.++|+..+.+.+.++  ...+.....+..++.++....|+.++++
T Consensus       361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~  435 (438)
T COG2270         361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRRE  435 (438)
T ss_pred             HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence            999999999999999999999999999999999999999999887  4455555556666655555556554444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.66  E-value=1.5e-14  Score=130.07  Aligned_cols=252  Identities=10%  Similarity=-0.019  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHH
Q psy10938         28 ILVIFGGLLYAYAAISITVLS-FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGL  105 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~  105 (314)
                      +.+..++...+...+..+... .+...+.+++|.+..+.+++.+.+.....+..+++|+++|| +||||++..+.+++.+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            334444445555555554443 44556678899999999999999998899999999999999 9999999999999999


Q ss_pred             HhHHHHhhhHHHH-HHHHHHHhhcccC---C-------------------------------------------------
Q psy10938        106 CGIASSVAQYYGV-FLALRFINGFASR---P-------------------------------------------------  132 (314)
Q Consensus       106 ~~~~~~~~~~~~~-l~~~r~l~G~~~~---P-------------------------------------------------  132 (314)
                      +.+.++++++... ++++|+++|+|.|   |                                                 
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            9999999876444 5589999999988   1                                                 


Q ss_pred             -----------------------CCCC--Ccccc-hhhhhh---------------------------------------
Q psy10938        133 -----------------------LIPG--HPGKV-ASVCDV---------------------------------------  147 (314)
Q Consensus       133 -----------------------l~~~--~~~~~-~~~~~~---------------------------------------  147 (314)
                                             +++.  +++++ .+....                                       
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                                   1111  11110 000000                                       


Q ss_pred             -hcCCcCCCc-Ccc-----------------------------c-ccCCC----ChhHHHHHHHHHhhhhhHHhHHHHHH
Q psy10938        148 -SALQPADNS-TVA-----------------------------T-CSGEV----NPEVFSHTLIIGLACIPSSLAMPLLV  191 (314)
Q Consensus       148 -~~~~~~~~~-~~~-----------------------------~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~  191 (314)
                       .+..+.++. +.+                             . ..+..    .........+..+..++...+.+++.
T Consensus       254 ~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~  333 (489)
T PRK10207        254 FREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY  333 (489)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH
Confidence             000000000 000                             0 01110    11223334444455656667788999


Q ss_pred             HHhhhHH-------HHHHHHHHHHHHHHHH-----HHh-----cchhHHHHHHHHHHHhhhhhchhheeeecccccchhh
Q psy10938        192 HKMGAKW-------FLVAGLVLSSGVAMAL-----YYV-----QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR  254 (314)
Q Consensus       192 d~~g~~~-------~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  254 (314)
                      ||+++|+       -+..+.++.+++++.+     .+.     .+.+......++.+.+.....+...+.+.+..|++.+
T Consensus       334 ~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        334 THLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            9999886       3556666666665432     121     1344555667778889999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHH
Q psy10938        255 VLAAALSSTFGRFGGLTGNLMFGFL  279 (314)
Q Consensus       255 ~~~~g~~~~~~~~g~~~~p~~~g~l  279 (314)
                      +.++|+.+...++|+.++..+....
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998887644

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.64  E-value=3.5e-14  Score=126.32  Aligned_cols=152  Identities=17%  Similarity=0.267  Sum_probs=126.5

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHH--------hcchhHHHHHHHH
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK--WFLVAGLVLSSGVAMALYY--------VQTSTQNLILSCI  229 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  229 (314)
                      ...+.+..+......+..+.+++|.++.+++.||+|.|  +++..+..+..+..+.-.+        ..+.+..++..++
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~  389 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL  389 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence            45678888888888999999999999999999999988  7777766666444444344        4567788888889


Q ss_pred             HHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhccc
Q psy10938        230 FEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      .|.+.+..++..-++.+|+.|+++.+..+|++...+...+.+||.+.|.+.|..+  ...+....++.+++.++....+.
T Consensus       390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999987  56666677777777777666655


Q ss_pred             CCCC
Q psy10938        308 TGKK  311 (314)
Q Consensus       308 ~~~~  311 (314)
                      +|++
T Consensus       470 ~~g~  473 (477)
T PF11700_consen  470 EKGR  473 (477)
T ss_pred             hhhh
Confidence            5443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=99.62  E-value=3.8e-14  Score=128.06  Aligned_cols=106  Identities=8%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      ++||..+..........+. .+.++...|.+++++|+|..+.+++.+.. ..+...+++.|++.||+|||+++.++.+++
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3455555544444433333 34566778889999999999999998774 455678889999999999999999999999


Q ss_pred             HHHhHHHHhh------hHHHHHHHHHHHhhcccC
Q psy10938        104 GLCGIASSVA------QYYGVFLALRFINGFASR  131 (314)
Q Consensus       104 ~~~~~~~~~~------~~~~~l~~~r~l~G~~~~  131 (314)
                      .++.++++++      ++++.+.+.|++.|+|.+
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~  135 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM  135 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            9999999997      689999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.62  E-value=3.9e-14  Score=127.30  Aligned_cols=244  Identities=20%  Similarity=0.246  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHH
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ....++.....+.+++.+..|+|-+ ....|+.+...++.+++.++.|+++|.||||++++.+.++..+|.+.++.++|.
T Consensus        53 ~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~  131 (599)
T PF06609_consen   53 VIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM  131 (599)
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH
Confidence            3334444445566788899999865 677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccC-------------C---------------------------------------------------
Q psy10938        117 GVFLALRFINGFASR-------------P---------------------------------------------------  132 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~-------------P---------------------------------------------------  132 (314)
                      ..++.+..+.|+|.|             |                                                   
T Consensus       132 ~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            999999999999988             1                                                   


Q ss_pred             ------CCCCCcc---cchhhhhhhcC------------------------Cc-CCCcCcc-------------------
Q psy10938        133 ------LIPGHPG---KVASVCDVSAL------------------------QP-ADNSTVA-------------------  159 (314)
Q Consensus       133 ------l~~~~~~---~~~~~~~~~~~------------------------~~-~~~~~~~-------------------  159 (314)
                            .++++++   ++.+.++.+++                        .. .......                   
T Consensus       212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE  291 (599)
T PF06609_consen  212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE  291 (599)
T ss_pred             HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence                  0111000   00001111100                        00 0000000                   


Q ss_pred             -----------------------------------------------cccCCCC---hhHHHHHHHHHhhhhhHHhHHHH
Q psy10938        160 -----------------------------------------------TCSGEVN---PEVFSHTLIIGLACIPSSLAMPL  189 (314)
Q Consensus       160 -----------------------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~  189 (314)
                                                                     ...+.+.   ...+......+++...|.++.+.
T Consensus       292 ~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~  371 (599)
T PF06609_consen  292 WFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL  371 (599)
T ss_pred             hhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence                                                           1111221   23455666677778888888888


Q ss_pred             HHHHhhh-HHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhh
Q psy10938        190 LVHKMGA-KWFLVAGLVLSSGVAMALYYV--QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGR  266 (314)
Q Consensus       190 l~d~~g~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  266 (314)
                      +..++++ |+.+..+.+++.+++-++...  ++....+...++.+++.+...........-..|+++-+++.|+..++..
T Consensus       372 l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~  451 (599)
T PF06609_consen  372 LFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRS  451 (599)
T ss_pred             HHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHH
Confidence            8888765 455556666666554444433  2333445666677777777777777777778899999999999999999


Q ss_pred             hhhhhHHHHHHHHHh
Q psy10938        267 FGGLTGNLMFGFLID  281 (314)
Q Consensus       267 ~g~~~~p~~~g~l~~  281 (314)
                      +|+.++.-+...+..
T Consensus       452 ~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  452 IGGSIGYAIYNAIFT  466 (599)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            999999888866653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.62  E-value=9.4e-15  Score=126.72  Aligned_cols=220  Identities=14%  Similarity=0.108  Sum_probs=147.9

Q ss_pred             HHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhccccc-----chhHH-HHHHHHHHHHHhHHHHhh---hH
Q psy10938         45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKIT-LIGALLVDGLCGIASSVA---QY  115 (314)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~  115 (314)
                      ...++..|.+.+|+|+|.+++|+..+. .+...+ ++++|+++||+     ||||. ++.+.++.++.....++.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            345678899999999999999999655 555555 99999999998     89897 467777777776676666   45


Q ss_pred             HHHHHHHHHHhhcccC--------------C-------------------------------------------------
Q psy10938        116 YGVFLALRFINGFASR--------------P-------------------------------------------------  132 (314)
Q Consensus       116 ~~~l~~~r~l~G~~~~--------------P-------------------------------------------------  132 (314)
                      .+.+....++.+.+.+              |                                                 
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            6666666667776555              1                                                 


Q ss_pred             --------------CCCCCccc---c-hhhh---hhhcC-CcCCCc-Ccc------------------------cccCCC
Q psy10938        133 --------------LIPGHPGK---V-ASVC---DVSAL-QPADNS-TVA------------------------TCSGEV  165 (314)
Q Consensus       133 --------------l~~~~~~~---~-~~~~---~~~~~-~~~~~~-~~~------------------------~~~~~~  165 (314)
                                    +.++.+++   + +...   +..+. .+++.. ...                        ...+.+
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  242 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFS  242 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                          01111000   0 0000   00000 000000 000                        234556


Q ss_pred             ChhHHHHHHHHH-hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHh
Q psy10938        166 NPEVFSHTLIIG-LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV-----------QTSTQNLILSCIFEAL  233 (314)
Q Consensus       166 ~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  233 (314)
                      ..+.+......+ +..+++.++++++.||+|+|+.+..+.++.++...+..+.           ++.+......++.+++
T Consensus       243 ~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (356)
T TIGR00901       243 KEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVT  322 (356)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence            666666565544 5678899999999999999998888887777766655443           2234444455566778


Q ss_pred             hhhhchhheeeecccccchhhHHHHHHHHhhhh
Q psy10938        234 TGCCISVVYCIMVDLFPTNLRVLAAALSSTFGR  266 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  266 (314)
                      .+..++...++..|.+|+++|++.+|+.+...+
T Consensus       323 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       323 GGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            888999999999999999999999999887754

>KOG2533|consensus

Probab=99.62  E-value=4.9e-14  Score=125.04  Aligned_cols=251  Identities=14%  Similarity=0.116  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHH
Q psy10938         26 HYILVIFGGLLYAYAAISITVLSF-VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (314)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  104 (314)
                      ...++..++..++..+.+...++- .+-.+.+|.+....+.+.+.++++++++++++++|.+.||++-.+.+....++++
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            345566666777777777766543 4566889999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhhhHHHHHHHHHHHhhcccC---C-------------------------------------------------
Q psy10938        105 LCGIASSVAQYYGVFLALRFINGFASR---P-------------------------------------------------  132 (314)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~r~l~G~~~~---P-------------------------------------------------  132 (314)
                      +..++.....|++.+++.|++.|+.++   |                                                 
T Consensus       123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            999888889999999999999999999   3                                                 


Q ss_pred             ------------------------CCCCCc-------ccchh-hhhhhcCCcC---CCcCcc------------------
Q psy10938        133 ------------------------LIPGHP-------GKVAS-VCDVSALQPA---DNSTVA------------------  159 (314)
Q Consensus       133 ------------------------l~~~~~-------~~~~~-~~~~~~~~~~---~~~~~~------------------  159 (314)
                                              ++....       +++.- ..+..+....   ++.+..                  
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~  282 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY  282 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence                                    111111       11000 0111111110   000000                  


Q ss_pred             -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHH----hhhHHHHHHHHHHHHHHH-HHHH
Q psy10938        160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHK----MGAKWFLVAGLVLSSGVA-MALY  215 (314)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~~~~~~~-~~~~  215 (314)
                                         ...+++..++..+.....++++++.+++|+++||    ..+|........+..+.- +.+.
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~  362 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL  362 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               2234677888889999999999999999999999    667766665554444433 4444


Q ss_pred             HhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhh-HHHHHHHHhhhhhhhhhHHHHH
Q psy10938        216 YVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR-VLAAALSSTFGRFGGLTGNLMF  276 (314)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r-~~~~g~~~~~~~~g~~~~p~~~  276 (314)
                      .................+.....+.......+....+.| -+..+........+++++|.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~  424 (495)
T KOG2533|consen  363 AAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF  424 (495)
T ss_pred             hhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence            443344444444444455666666667777776655444 4444444444445555544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.61  E-value=6.4e-14  Score=126.52  Aligned_cols=246  Identities=10%  Similarity=-0.051  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHhh-ccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHHHhHH
Q psy10938         32 FGGLLYAYAAISITVLSFV-LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~  109 (314)
                      .++...+...+..+..... .+.+.+++|+++.+.+++.+.+........+++|+++|| +|||+.+..+.++..++..+
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444 444568899999999998888776666777899999999 59999999999999999999


Q ss_pred             HHhhh-HHHHHHHHHHHhhcccC---C-----------------------------------------------------
Q psy10938        110 SSVAQ-YYGVFLALRFINGFASR---P-----------------------------------------------------  132 (314)
Q Consensus       110 ~~~~~-~~~~l~~~r~l~G~~~~---P-----------------------------------------------------  132 (314)
                      +++++ +.+.+.+.|+++|++.|   |                                                     
T Consensus       105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence            88874 56677788999999887   1                                                     


Q ss_pred             -------------------CCCC--Ccccc-hhhhhh---------------------------------------h-cC
Q psy10938        133 -------------------LIPG--HPGKV-ASVCDV---------------------------------------S-AL  150 (314)
Q Consensus       133 -------------------l~~~--~~~~~-~~~~~~---------------------------------------~-~~  150 (314)
                                         ++++  +++.+ .+..+.                                       . +.
T Consensus       185 i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (500)
T PRK09584        185 LSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA  264 (500)
T ss_pred             HHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence                               1111  11100 000000                                       0 00


Q ss_pred             CcCC-CcCcc--------------------------c-ccC-------CCChhHHHHHHHHHhhhhhHHhHH----HHHH
Q psy10938        151 QPAD-NSTVA--------------------------T-CSG-------EVNPEVFSHTLIIGLACIPSSLAM----PLLV  191 (314)
Q Consensus       151 ~~~~-~~~~~--------------------------~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----g~l~  191 (314)
                      .+.+ ..+.+                          . ..+       ...........+..+..++...+.    +++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~  344 (500)
T PRK09584        265 FAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMG  344 (500)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence            0000 00000                          0 001       011224445555555555555555    4444


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHH
Q psy10938        192 HKMGAKWFLVAGLVLSSGVAMALYYVQT---------STQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSS  262 (314)
Q Consensus       192 d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  262 (314)
                      +|.+..+.+.++.++.+++++.+....+         .+......++.+++.....|...+++.+..|++.||+++|+..
T Consensus       345 ~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        345 DRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4455557778888888888877655533         3456667778888999999999999999999999999999776


Q ss_pred             hhhhhhhhhHHHHHH
Q psy10938        263 TFGRFGGLTGNLMFG  277 (314)
Q Consensus       263 ~~~~~g~~~~p~~~g  277 (314)
                      ....+|..++..+.+
T Consensus       425 l~~a~g~~~~g~~~~  439 (500)
T PRK09584        425 LTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555544443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.59  E-value=2.4e-13  Score=120.36  Aligned_cols=139  Identities=14%  Similarity=0.052  Sum_probs=104.2

Q ss_pred             HHHHHHhhhhhHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhcc---------------------hhHHHHHHHH
Q psy10938        172 HTLIIGLACIPSSLAMPLLVHKMGA-KWFLVAGLVLSSGVAMALYYVQT---------------------STQNLILSCI  229 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~  229 (314)
                      ......+...+.+++-.++.+|+|+ |.....+.++.++++....+..+                     .+..+.....
T Consensus       310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (477)
T TIGR01301       310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI  389 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence            3445555556667778888999984 67778888888888877765442                     1445666677


Q ss_pred             HHHhhhhhchhheeeecccccc--hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHh
Q psy10938        230 FEALTGCCISVVYCIMVDLFPT--NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC---LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~  304 (314)
                      .|+.....+...++++++..|+  +..|..+|+.|.+..+.+++..+..|.+.+..+   ...+.+.++.++++++...+
T Consensus       390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999985  445999999999999999999999998766655   34556667777777777665


Q ss_pred             c-ccCCC
Q psy10938        305 L-PATGK  310 (314)
Q Consensus       305 ~-~~~~~  310 (314)
                      + |++++
T Consensus       470 ~~~~~~~  476 (477)
T TIGR01301       470 LLPRPRV  476 (477)
T ss_pred             hCCCCCC
Confidence            4 77653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.57  E-value=1.2e-13  Score=119.82  Aligned_cols=157  Identities=10%  Similarity=-0.061  Sum_probs=118.2

Q ss_pred             HHHHHHhhccccccccccccch-hhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q psy10938         43 SITVLSFVLPSAQCDFGMTSSD-KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA  121 (314)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  121 (314)
                      -+...+.+.|.+.+|+|+|++| .|.+.+.++.+|++.+++.|+++||+|.|+++..+.+.+++..++.++++++..+.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHH--
Q psy10938        122 LRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWF--  199 (314)
Q Consensus       122 ~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--  199 (314)
                      .|++.|++.||   .- ..........+.++            .....+...+...++.+++.+++++ ...+|+|..  
T Consensus       121 ~R~llGvaEA~---~~-A~~syI~~WfP~kE------------R~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~  183 (511)
T TIGR00806       121 MEVFYSVTMAA---RI-AYSSYIFSLVPPSR------------YQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST  183 (511)
T ss_pred             HHHHHHHHHHH---HH-HHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence            99999999982   11 11111111111111            2334556677777888888888888 456787653  


Q ss_pred             -HHHHHHHHHHHHHHHHH
Q psy10938        200 -LVAGLVLSSGVAMALYY  216 (314)
Q Consensus       200 -~~~~~~~~~~~~~~~~~  216 (314)
                       ..++.....+++++..+
T Consensus       184 Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence             23344444444444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.55  E-value=2.2e-13  Score=125.91  Aligned_cols=149  Identities=13%  Similarity=0.137  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH
Q psy10938         31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (314)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  110 (314)
                      +..++..+.........+..++.++++|+++..+.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44445666677777888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhh---------------------------------------------------HHHHHHHHHHHhhcccCCCCCCCcc
Q psy10938        111 SVAQ---------------------------------------------------YYGVFLALRFINGFASRPLIPGHPG  139 (314)
Q Consensus       111 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~Pl~~~~~~  139 (314)
                      ++.+                                                   .+..++++|+++|+|.+|+   .+.
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~---~~~  192 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI---FPL  192 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc---hhc
Confidence            8763                                                   2567789999999999832   112


Q ss_pred             cchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh
Q psy10938        140 KVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM  194 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  194 (314)
                      ...-..|..+.++            .+...+.......++..+|.++++++.+.+
T Consensus       193 ~~~~i~d~~~~~~------------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       193 GISYIDDFAKSKN------------SPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             CchhhhccCCccc------------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            2222223222221            344556666777777888888888877643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09669 putative symporter YagG; Provisional

Probab=99.54  E-value=5.2e-13  Score=119.31  Aligned_cols=236  Identities=12%  Similarity=0.029  Sum_probs=148.4

Q ss_pred             hhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc----cchhH-HHHHHHHHHHHHhHHHHhhhH------HH
Q psy10938         49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKI-TLIGALLVDGLCGIASSVAQY------YG  117 (314)
Q Consensus        49 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~  117 (314)
                      .+.+.+.+++|+|+.++|.+.++..+..++..|+.|.++||    +|||| .++.+....+++..+....|+      +.
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34556677899999999999999999999999999999998    78755 556677777776655544432      34


Q ss_pred             HHHHHHHHhhcccC----C---------------------------------------C---------------------
Q psy10938        118 VFLALRFINGFASR----P---------------------------------------L---------------------  133 (314)
Q Consensus       118 ~l~~~r~l~G~~~~----P---------------------------------------l---------------------  133 (314)
                      .+++..++.+.+..    |                                       +                     
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            44444444443332    2                                       0                     


Q ss_pred             --------------CCC-Ccccc--hhh----hhhhcCCcCCCcCcc-------------------cccCCCChhHHHHH
Q psy10938        134 --------------IPG-HPGKV--ASV----CDVSALQPADNSTVA-------------------TCSGEVNPEVFSHT  173 (314)
Q Consensus       134 --------------~~~-~~~~~--~~~----~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~  173 (314)
                                    +++ +++++  .+.    ++..++++.......                   ..............
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~  270 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFL  270 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHH
Confidence                          000 00000  000    001111100000000                   01111122223334


Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhchhheeeeccccc-
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV--QTSTQNLILSCIFEALTGCCISVVYCIMVDLFP-  250 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  250 (314)
                      ....+..+++.++.+++.||+|+|+.+..+.....+......+.  ++.+...+..++.+++.+...+..++..+|..+ 
T Consensus       271 ~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~  350 (444)
T PRK09669        271 VTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDY  350 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44556677888899999999999999887776655444333333  234445555667788888888888999988875 


Q ss_pred             ------chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        251 ------TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       251 ------~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                            ++..|...|..+....+|..++|.+.|.+.+..|
T Consensus       351 ~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        351 EEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                  2335677899999999999999999999988654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.52  E-value=4.3e-13  Score=120.20  Aligned_cols=257  Identities=12%  Similarity=0.058  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccc-----hhHHHHHHHH
Q psy10938         27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-----RKITLIGALL  101 (314)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~  101 (314)
                      .....++...++..+........+.|.+.+++|+|+++++...+...+...+-.+ +|+++||++     ||+.++++.+
T Consensus        25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            3445555566777777733445566777788999999999999999999999666 999999998     7888888877


Q ss_pred             HHH-HHhHHHHhhhHHHHHH-HHHHHhhcccC--------------C---------------------------------
Q psy10938        102 VDG-LCGIASSVAQYYGVFL-ALRFINGFASR--------------P---------------------------------  132 (314)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~--------------P---------------------------------  132 (314)
                      +.. +.....+..++..... +..++.+++.+              |                                 
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            763 4433344445544444 47778777776              0                                 


Q ss_pred             ------------------------CCCCC----cccchh-------------------hhhhhcCCcCCCcC-------c
Q psy10938        133 ------------------------LIPGH----PGKVAS-------------------VCDVSALQPADNST-------V  158 (314)
Q Consensus       133 ------------------------l~~~~----~~~~~~-------------------~~~~~~~~~~~~~~-------~  158 (314)
                                              +++++    ++..+.                   ..+..+..+++...       .
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl  263 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFL  263 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence                                    12211    110000                   00011000000000       0


Q ss_pred             --c--------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----
Q psy10938        159 --A--------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV-----  217 (314)
Q Consensus       159 --~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----  217 (314)
                        .              ...+.++...+......+++.+++....+++.+|++.|+.+..+.++.+++.+.....     
T Consensus       264 ~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~  343 (468)
T TIGR00788       264 SYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN  343 (468)
T ss_pred             HHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence              0              3567788889988888999999999999999999999999998888888766543211     


Q ss_pred             -----cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        218 -----QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       218 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                           ++.+.......+.++..+..+.....++.+..|++.+++.+++.+++.++|..+++.++|.+.+..|
T Consensus       344 ~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       344 LAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             cccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                 2222233344556666667777778999999999999999999999999999999999999998765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.52  E-value=4.7e-13  Score=119.04  Aligned_cols=235  Identities=15%  Similarity=0.118  Sum_probs=168.9

Q ss_pred             hhccccccccccccchhhHHhHhhHHHHHHhhhhhhhccc----ccchhHHH-HHHHHHHHHHhHHHHhh-h-------H
Q psy10938         49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITL-IGALLVDGLCGIASSVA-Q-------Y  115 (314)
Q Consensus        49 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~~-~-------~  115 (314)
                      .+.+.+.+.+|+++...|++..+.-+..++..|+.|.++|    |+||||.. +.+....+++.++.... |       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4456666778999999999999999999999999999999    89977765 57878888887777765 4       2


Q ss_pred             HHHHHHHHHHhhcccC----C-----------------------------------------------------------
Q psy10938        116 YGVFLALRFINGFASR----P-----------------------------------------------------------  132 (314)
Q Consensus       116 ~~~l~~~r~l~G~~~~----P-----------------------------------------------------------  132 (314)
                      ...+.+..++..++..    |                                                           
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2334555555555555    2                                                           


Q ss_pred             ---------------CCC--CCcccc---hhhhhhhcCCcCCCcCcc------------------------cccCCCChh
Q psy10938        133 ---------------LIP--GHPGKV---ASVCDVSALQPADNSTVA------------------------TCSGEVNPE  168 (314)
Q Consensus       133 ---------------l~~--~~~~~~---~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~  168 (314)
                                     .++  ++++++   .+..+..+...+++....                        ...+. ...
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~-~~~  261 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGN-EGL  261 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC-chh
Confidence                           011  000000   011111110000000000                        11222 244


Q ss_pred             HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        169 VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ--TSTQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      .........+..+++.++.++++||+|+|+....+..+.+++.+.+.+.+  +.+..++...+.+.+.+..+...++..+
T Consensus       262 ~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~a  341 (428)
T PF13347_consen  262 ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLA  341 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccc
Confidence            55566677888899999999999999999999999999999988887776  7777788888889999999999999999


Q ss_pred             ccccc-------hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        247 DLFPT-------NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       247 ~~~p~-------~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      |..+.       +..|...|+.+....++..+++.+.|.+.+..|
T Consensus       342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            98863       345899999999999999999999999887643

>PRK09848 glucuronide transporter; Provisional

Probab=99.52  E-value=1.7e-12  Score=116.21  Aligned_cols=110  Identities=17%  Similarity=0.250  Sum_probs=85.0

Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhchhheeeecccccc
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ--TSTQNLILSCIFEALTGCCISVVYCIMVDLFPT  251 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  251 (314)
                      ....++.+++.++.+++.||+|+|+.+..+.++..++.+.+.+.+  +.+......++.+++.+...+...+..+|..|.
T Consensus       271 ~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~  350 (448)
T PRK09848        271 VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEY  350 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333456777888999999999999999988888777776666544  233334445566777788888888888888765


Q ss_pred             h-------hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        252 N-------LRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       252 ~-------~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      +       .+|...|+.+....+|..+++.+.|.+.+..
T Consensus       351 ~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        351 GEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             hHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3       3599999999999999999999999987654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.44  E-value=2.7e-12  Score=112.34  Aligned_cols=146  Identities=13%  Similarity=0.108  Sum_probs=122.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+...+.++.+......++.+++.+...+....+
T Consensus        38 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  117 (385)
T TIGR00710        38 PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQAL  117 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            55678888889999999999999999999999999999999988888888888887777777778888888888888999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccCCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPATGK  310 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  310 (314)
                      +.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+++.++..+... ..||+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999998876 4456666665555555443 3466543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.44  E-value=3.8e-12  Score=110.41  Aligned_cols=140  Identities=15%  Similarity=0.088  Sum_probs=115.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhhhhhch
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-----TSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.++..+..     +.+..+...++.+++.+...+
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            556788888899999999999999999999999999998888777777666665     667777777778888888888


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.++..+++.+....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999998877 44555555555554444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.43  E-value=3.7e-12  Score=109.99  Aligned_cols=138  Identities=21%  Similarity=0.171  Sum_probs=118.0

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      .+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.+..+...++.+++.+...+....
T Consensus        29 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  108 (352)
T PF07690_consen   29 LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNA  108 (352)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccc
Confidence            36677888899999999999999999999999999999999999888555555566677777778888888899999999


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVF  301 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~  301 (314)
                      ++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+++.++..++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  109 LIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            99999999999999999999999999999999999997776 45677777777776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.42  E-value=2.2e-11  Score=113.59  Aligned_cols=144  Identities=18%  Similarity=0.126  Sum_probs=117.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +....++..+...++.+++.+++|+++||+|||+.+.++.++..++.++..+.++.+.+++..++.+++.++..+....+
T Consensus       200 s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~  279 (742)
T TIGR01299       200 PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSY  279 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888889999999999999999999999999998888888888888888888888888999999999999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-------------H-HHHHHHHHHHHHHHHHHHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-------------L-ILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      +.|.+|++.|++..++.+.+..+|.++++.+...+....+             + ..+++.++..++..+..+++||+
T Consensus       280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES  357 (742)
T TIGR01299       280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES  357 (742)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999988776664322             2 23334444444444445566876

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.42  E-value=3.5e-12  Score=111.68  Aligned_cols=146  Identities=15%  Similarity=0.183  Sum_probs=123.4

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+..+.+...+...++..++.++.|++.||+|||+.+..+..+..++..+..+.++.+......++.+++.+...+...
T Consensus        25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  104 (399)
T TIGR00893        25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGII  104 (399)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            34667788889999999999999999999999999999999998888888888888888888888888888888899999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh-cccC
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF-LPAT  308 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~  308 (314)
                      .++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+.+.+++.++..+...+ .+|+
T Consensus       105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            999999999999999999999999999999999999888876 45566666665555554443 3443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=4.9e-12  Score=111.15  Aligned_cols=144  Identities=15%  Similarity=0.045  Sum_probs=120.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.+..|.+.||+|||+.+..+..+..++.+...+.++.+..++..++.+.+.+...+...++
T Consensus        42 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~  121 (390)
T PRK03545         42 QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASL  121 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888888999999999999999999999999999998888888888887777777777777777888889


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~  308 (314)
                      +.|.+|+++|+++.|+......+|..++|++.+.+.+..+ ...+++.+.+.++..+... .+||.
T Consensus       122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999988877 5566666666655544433 34543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.42  E-value=5.8e-12  Score=110.74  Aligned_cols=144  Identities=11%  Similarity=0.049  Sum_probs=120.9

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|.+.||+|||+.+..+..+.+++.++..+.++.+..+...++.+++.+...+....+
T Consensus        53 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  132 (394)
T PRK10213         53 SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASL  132 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56677888888889999999999999999999999999999999988888888888888888888888888888999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~  308 (314)
                      +.|.+|+++|+++.++.....++|..++|.+.+.+.+..+ ...+++.+.+.+++.+... ..||+
T Consensus       133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999998877 4455555555544443333 34654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.41  E-value=9.3e-12  Score=112.07  Aligned_cols=118  Identities=10%  Similarity=0.071  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---h-c-chhHHHHHHHHHHHhhhhhchhh
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY---V-Q-TSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      ...+.......+..+++.++.+++.||+|+|+.+..+..+..++.+....   . + +.+...+..++.+++.+..++..
T Consensus       266 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~  345 (473)
T PRK10429        266 DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ  345 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666788889999999999999999988777665555444332   1 2 23334444555667777777777


Q ss_pred             eeeeccccc-------chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        242 YCIMVDLFP-------TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       242 ~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      +++.+|..+       .+..|..+|.......++..+++.+.|.+.+..|
T Consensus       346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888888855       3345668899999999999999999999987543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.41  E-value=8.4e-12  Score=110.40  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=121.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.++..+...++..++.+..|++.||+|||+.+..+.++..++.++..+.++.+..+..-++.+++.+...+....+
T Consensus        41 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  120 (412)
T TIGR02332        41 SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLY  120 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            56678888899999999999999999999999999999999999988888888888888888888898888888888889


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh------hh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG------HC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      +.|.+|+++|+++.++.+....+|..++|.+.+.+.+.      .+ ...|.+.++..++..++. +++||++
T Consensus       121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999988752      34 456666666655444433 4456654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.41  E-value=7e-12  Score=93.16  Aligned_cols=131  Identities=21%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             HHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhh
Q psy10938        175 IIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR  254 (314)
Q Consensus       175 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  254 (314)
                      ...++..++.+..+++.||+|||+.+..+.....++.+.....++.+......++.+++.+...+....+..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            34567788899999999999999999988888888887777777777777777778888888888888999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhc
Q psy10938        255 VLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       255 ~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +++.++.+....+|..++|.+.+.+.+..++ ..+++.+.+.+++.+...+.
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999988764 55666666666655554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.40  E-value=7.1e-12  Score=109.55  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=122.0

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.....+.++.+......++.+++.+...+...
T Consensus        22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  101 (377)
T PRK11102         22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN  101 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667888888999999999999999999999999999999999999888888888777777777778888888888888


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccC
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPAT  308 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  308 (314)
                      +++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+.+.++..+.. .++||+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102        102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999998776 455666666665555443 344654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.39  E-value=6.5e-12  Score=110.37  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +....++....+.+...+..++.|++.||+|||+++..+..+..+..+...+..+.   +...++.+.+.+...|...++
T Consensus        36 s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~  112 (393)
T PRK11195         36 PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGI  112 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44567778888889999999999999999999999999998887766665554443   444566788888899999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      +.|.+|+++|+++.|+.+....++..+||.++|.+.+......+.+.+.+.+++.+....+||.
T Consensus       113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~  176 (393)
T PRK11195        113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRL  176 (393)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999998754444444444444444444455654

>PRK10054 putative transporter; Provisional

Probab=99.39  E-value=6.8e-12  Score=110.35  Aligned_cols=144  Identities=13%  Similarity=0.082  Sum_probs=113.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...+...++.+..|+++||+|||+.+..+.....++.+.+.+.++.+..+....+.+...+...+....+
T Consensus        41 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  120 (395)
T PRK10054         41 SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAW  120 (395)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888999999999999999999999988888888888887777776655554445555555666777888


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSM-FLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  308 (314)
                      ..|..|++.|+++.|+.+...++|..++|.+.+.+.+......+...+++.+++.+... ++||+
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999999999999988864335667766666666544433 34443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.38  E-value=1.5e-11  Score=108.86  Aligned_cols=145  Identities=18%  Similarity=0.118  Sum_probs=117.5

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +........+.+.++..++.+..|.++||+|||+++..+..+..++.++..+.++.+..++..++.+++.+...+..+..
T Consensus        49 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~  128 (413)
T PRK15403         49 DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVT  128 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677788888999999999999999999999999998888888888888887777777777777666555666778


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      ..|.+|+++++++.++.+....++..++|.+++.+.+..+ ...|++.+++.+++.+.. ..+||++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            8899999999999999999999999999999999988766 556777676666665543 3457754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.38  E-value=1.3e-11  Score=108.48  Aligned_cols=145  Identities=17%  Similarity=0.142  Sum_probs=117.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|+++||+|||+.+..+..+..+..+.....++.+......++.+.+.+...+....+
T Consensus        36 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  115 (392)
T PRK10473         36 SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAI  115 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            55667778888888999999999999999999999999998888888888777776666666677777777777888899


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      +.|.+|+++|+++.++.+....++..++|.+.+.+.+..+ ...+++.+.+.++..++. ..+||++
T Consensus       116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999998887766 455666666655555543 3446653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.37  E-value=5.9e-12  Score=113.81  Aligned_cols=144  Identities=15%  Similarity=0.098  Sum_probs=120.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+..+...++.+++.+...+....+
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~  114 (485)
T TIGR00711        35 SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST  114 (485)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            44567788888899999999999999999999999999999999988888888888888888888888888888999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~  308 (314)
                      +.|.+|+++|+++.++......+|..++|.+.|.+.++.+ ...+++.+.+.++..++.. +.||+
T Consensus       115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999998876 4455555555444444433 34543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.37  E-value=1e-11  Score=110.67  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++.+......++.+++.+..++....+
T Consensus        56 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~  135 (434)
T PRK11663         56 SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKL  135 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            55677888889999999999999999999999999999999999988888888777766666667777777778888899


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH-HHhccc
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVF-SMFLPA  307 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~  307 (314)
                      +.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..+ ...+.+.+++.++..+. .++++|
T Consensus       136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999998877 44555555554444333 334444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.37  E-value=2.2e-11  Score=107.29  Aligned_cols=143  Identities=14%  Similarity=0.101  Sum_probs=115.8

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +....++......+...+..++.|+++||+|||+.+..+..+..+..+...+.++.+......++.+++.+...+...++
T Consensus        44 s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~  123 (400)
T PRK11646         44 AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTAL  123 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788888888888889999999999999999999999999999888888777777777777777777777888888


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-Hhccc
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFS-MFLPA  307 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  307 (314)
                      +.|.+|+++|+++.|+.+...++|..++|.+.|.+.+......+++.+...++..++. .+.||
T Consensus       124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999984322555666665555544433 34454

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.36  E-value=1.6e-11  Score=107.53  Aligned_cols=145  Identities=11%  Similarity=0.007  Sum_probs=121.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+.++..++..+.++.+..++..++.+++.+...+.....
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  115 (382)
T PRK10091         36 SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIV  115 (382)
T ss_pred             CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            55667888899999999999999999999999999999999999999988888888888888888888888777777788


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      ..|..|+++|+++.++......++..++|.+.+.+.+..+ ...+++.+++.++..+.. ..+||.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8999999999999999999999999999999999988766 456666666555544433 3456643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.36  E-value=1.6e-11  Score=108.14  Aligned_cols=144  Identities=14%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+..+...++.+.+.+...+...++
T Consensus        45 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  124 (405)
T TIGR00891        45 TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAY  124 (405)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            45667888888999999999999999999999999999998888888888888888777777888888888888888999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--H-HHHHHHHHHHHHHHHHHHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--L-ILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      +.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+  + ..+.+.+...++..+.....||+
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  191 (405)
T TIGR00891       125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA  191 (405)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999887654  3 33444333333333333345664

>KOG2563|consensus

Probab=99.35  E-value=3.4e-11  Score=102.73  Aligned_cols=283  Identities=13%  Similarity=0.081  Sum_probs=197.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHH
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  101 (314)
                      ..++||.++++.++..+.+++.+..+++...+....|| +....-|+.-+|.+.+....+++-|+.||+|-|...+++..
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~  117 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV  117 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence            45678888888888889999999888888888888888 77788899999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhh------HHH--HHHHHHHHhhcccC-----C------------------------------------
Q psy10938        102 VDGLCGIASSVAQ------YYG--VFLALRFINGFASR-----P------------------------------------  132 (314)
Q Consensus       102 ~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~-----P------------------------------------  132 (314)
                      +.+++..+-..+.      .++  ....+..+.+...-     |                                    
T Consensus       118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp  197 (480)
T KOG2563|consen  118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP  197 (480)
T ss_pred             HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence            9999998876653      333  44455555555444     1                                    


Q ss_pred             C------------------------------------CCCCcccchhhhhhhcC-CcCCC------cCcc----------
Q psy10938        133 L------------------------------------IPGHPGKVASVCDVSAL-QPADN------STVA----------  159 (314)
Q Consensus       133 l------------------------------------~~~~~~~~~~~~~~~~~-~~~~~------~~~~----------  159 (314)
                      +                                    .+++|+...+..+...+ ....+      ....          
T Consensus       198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi  277 (480)
T KOG2563|consen  198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGI  277 (480)
T ss_pred             eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhh
Confidence            0                                    11111111110000000 00000      0000          


Q ss_pred             ----------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHH-HHHHHHHHHHHHH-HHHHHh---c
Q psy10938        160 ----------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKW-FLVAGLVLSSGVA-MALYYV---Q  218 (314)
Q Consensus       160 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~-~~~~~~---~  218 (314)
                                      ...++.+..++.......+.++++..+.|.+.||.+.-+ ..........++. .+....   .
T Consensus       278 ~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~  357 (480)
T KOG2563|consen  278 GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG  357 (480)
T ss_pred             hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence                            345666788899999999999999999999999987543 3444444444442 222222   2


Q ss_pred             chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh----HHH-HHHHHH
Q psy10938        219 TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC----LIL-ICTLAA  293 (314)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~----~~~-~~~~~~  293 (314)
                      ..+..+....+++++..+..|+.+-+..|..-|...++..|+.+..+++-+.+-.++.+...+..+    +.+ -+....
T Consensus       358 ~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  437 (480)
T KOG2563|consen  358 DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTV  437 (480)
T ss_pred             ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHH
Confidence            345566777788989999999999999999766777889999999999999999999998888765    333 333444


Q ss_pred             HHHHHHHHHHhc
Q psy10938        294 MLLIAGVFSMFL  305 (314)
Q Consensus       294 ~~~~~~~~~~~~  305 (314)
                      .+++..++..+.
T Consensus       438 ~~~l~~~lva~~  449 (480)
T KOG2563|consen  438 SALLGAILVAFF  449 (480)
T ss_pred             HHHHHHHHHhhh
Confidence            455555555554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.35  E-value=2.8e-11  Score=109.58  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=116.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+..+....+.++.....+..|+++||+|||+.+..+..+..++.+...+.++.+..++.-++.+++.+...+.....
T Consensus        39 s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~  118 (495)
T PRK14995         39 SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAG  118 (495)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777788888888889999999999999999999999999999988888888888887788888888777777766


Q ss_pred             ecccc-cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccC
Q psy10938        245 MVDLF-PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPAT  308 (314)
Q Consensus       245 ~~~~~-p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  308 (314)
                      +.+.+ |+++|+++.|+......+|..++|.+.|.+.++.+ ...|++...+.++..++. .++|+.
T Consensus       119 l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        119 IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            66665 67899999999999999999999999999999877 455666555555544443 344654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=1.3e-11  Score=109.04  Aligned_cols=144  Identities=15%  Similarity=0.070  Sum_probs=118.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+++..+..+..++.+...+.++.+...+..++.+++.+...+...++
T Consensus        48 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  127 (406)
T PRK11551         48 DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL  127 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56678888899999999999999999999999999999988888887777778888777777888888888888888999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  308 (314)
                      +.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+++.++..+.. .++||+
T Consensus       128 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999888877766 445555555444444333 345654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.35  E-value=3.2e-11  Score=104.84  Aligned_cols=145  Identities=16%  Similarity=0.056  Sum_probs=107.9

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      .+..+.+...+.+.++..++.+..|++.||+|||+++.........+.......++.+..+..-++.+.+.+. ......
T Consensus        23 ~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~  101 (368)
T TIGR00903        23 VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFA  101 (368)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHH
Confidence            3667788888899999999999999999999999877655544444333223325666667777777777765 344555


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      ...|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...|.+.+++.++..++. .++||.+
T Consensus       102 ~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       102 PAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999999999999999999999988877 445666566665555544 3457653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=4.5e-10  Score=95.31  Aligned_cols=124  Identities=8%  Similarity=0.094  Sum_probs=99.1

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+..+.+.....+..+..+|+++++++.||+++|+.+..+..+..+..++....+... ......+.+++.+..+|...
T Consensus       174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~  252 (310)
T TIGR01272       174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIF  252 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            66778888889999999999999999999999999988888877777766555544433 33455577889999999999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHH
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILIC  289 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~  289 (314)
                      +...+..|++ .+++.++. ..+.+|+++.|.+.|.+.|..+ ..+++
T Consensus       253 s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       253 SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            9988888754 46677775 5778999999999999999877 44444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.32  E-value=4.5e-11  Score=105.61  Aligned_cols=145  Identities=16%  Similarity=0.063  Sum_probs=116.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +....+.......++..++.++.|.++||+|||+.+..+.....++.+...+.++.+..+...++.+.+.+...+.....
T Consensus        46 s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  125 (406)
T PRK15402         46 GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAA  125 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence            44566777788889999999999999999999999999988888888888777777776666677777766667777888


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~  309 (314)
                      +.|.+|++.|.++.++......++..++|.+.+.+.+..+ ...+++.+++.+++.+... ..||++
T Consensus       126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8999999999999999988888999999999999988766 4566666666665555433 346654

>TIGR00895 2A0115 benzoate transport

Probab=99.31  E-value=1.4e-11  Score=108.14  Aligned_cols=144  Identities=19%  Similarity=0.131  Sum_probs=117.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+.......++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+...+..++.+++.+...+...++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  129 (398)
T TIGR00895        50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL  129 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHH
Confidence            45567777888888999999999999999999999999998888888888777777777777777888888888999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH-HHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVF-SMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  308 (314)
                      ..|.+|++.|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+.+.++..++ ..++||+
T Consensus       130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999998876 34455554444443333 3344554

>KOG3764|consensus

Probab=99.31  E-value=1e-11  Score=104.10  Aligned_cols=141  Identities=17%  Similarity=0.181  Sum_probs=130.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      ...+.++......+.+++...+.|.+.||+|+|..+.++..++..+.+++.+..+.+..++.-.+-+.+.........++
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam  183 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM  183 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence            56678899999999999999999999999999999999999999999999999998888888899999999999999999


Q ss_pred             ecccccchh-hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        245 MVDLFPTNL-RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       245 ~~~~~p~~~-r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      +++.+|+++ |++++|+.-.+..+|-.++|+++|.++|..| ..+|.+.++++++-..+-+++
T Consensus       184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999865 6999999999999999999999999999988 889999999999888877665

>TIGR00898 2A0119 cation transport protein

Probab=99.30  E-value=5.2e-11  Score=108.26  Aligned_cols=141  Identities=15%  Similarity=0.152  Sum_probs=119.1

Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      ....+...+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+..++..++.+++.+...+....++
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  205 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLN  205 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHh
Confidence            56778889999999999999999999999999999999999999888888888888888888888989999899999999


Q ss_pred             cccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        246 VDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       246 ~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      .|.+|+++|+.+.++......+|.+++|.+.+.+.+  ....+++.++..++..+..+++||+
T Consensus       206 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             heecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999988888999999988766554  3445555566655555555566764

>PRK10504 putative transporter; Provisional

Probab=99.30  E-value=8.1e-11  Score=106.08  Aligned_cols=140  Identities=13%  Similarity=0.115  Sum_probs=114.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+...+.++.+..+...++.+++.+...+.....
T Consensus        43 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~  122 (471)
T PRK10504         43 SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLT  122 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44556666777788888999999999999999999988888888777777777777777777788888888888888899


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      +.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..+ ...|.+...+..++.+....
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        123 VMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999877 44555555555554444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.29  E-value=1.3e-11  Score=107.66  Aligned_cols=145  Identities=13%  Similarity=0.061  Sum_probs=118.5

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.++..+.++.+..++..++.+++.+...+...
T Consensus        26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  105 (379)
T TIGR00881        26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG  105 (379)
T ss_pred             CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence            34567788889999999999999999999999999999999999999988888888888777777888888888889999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHH-HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hccc
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGN-LMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPA  307 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p-~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  307 (314)
                      +++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+ ...+++.+.+.++..+... +.+|
T Consensus       106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881       106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence            9999999999999999999999999999999 46666666555 4556666655555444443 3344

>KOG2615|consensus

Probab=99.29  E-value=1.1e-11  Score=103.32  Aligned_cols=116  Identities=17%  Similarity=0.080  Sum_probs=100.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +...++...+.+.+.+++.+...|.++||+|||.++.++....++...+.....+.......-++.| ..-+..++..++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~G-i~kgnl~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGG-IFKGNLSVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCchHHHHHH
Confidence            5667888899999999999999999999999999999999999998888887777633333345555 445566778899


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      ++|++++++|+.+++..++...+|-++||.++|++.+
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999999999999999999988

>KOG3762|consensus

Probab=99.29  E-value=2e-12  Score=112.18  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=111.7

Q ss_pred             HHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhh
Q psy10938        175 IIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR  254 (314)
Q Consensus       175 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  254 (314)
                      ....+.++.-++.+++.+|+|+-+++..+.....+-++.+.+..++|..+.+-++-+...+..+...-+|+....|++.|
T Consensus       414 ~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~  493 (618)
T KOG3762|consen  414 LCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR  493 (618)
T ss_pred             hhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence            33345666677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh-hhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        255 VLAAALSSTFGR-FGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       255 ~~~~g~~~~~~~-~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      .++.++...... +|-.+|.+++|.+.+..+ ...|.++++.+++..+...
T Consensus       494 at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  494 ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            999999988865 999999999999999988 6677777776666555444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.29  E-value=4.8e-11  Score=102.81  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+.......+...++.++.|++.||+|||+.+..+..+..++.+.....++.+......++.+++.+...+...++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  111 (352)
T cd06174          32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL  111 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHH
Confidence            55678888888999999999999999999999999999999999999888888787777777888888888888999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVF  301 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~  301 (314)
                      ..|.+|+++|++..++.+....+|..++|.+.+.+.+..+ ...+++.+...++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             HHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876 44555555555544443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.2e-10  Score=99.55  Aligned_cols=144  Identities=17%  Similarity=0.104  Sum_probs=132.8

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+...++...+.+..+..++.++...+.||+.||+++.....+..++-++..+.++.+...+.-++.++..+..++...
T Consensus        44 ~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~  123 (394)
T COG2814          44 GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA  123 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcc
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLP  306 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~  306 (314)
                      +...+++|+++|+++.++......+...+|.+++.++-|..| ..+|+..+.+.+++.+..+ .+|
T Consensus       124 ~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         124 ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999998 6778888888777776544 457

>PRK11043 putative transporter; Provisional

Probab=99.28  E-value=1e-10  Score=103.19  Aligned_cols=143  Identities=17%  Similarity=0.161  Sum_probs=115.4

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+......++.+++.+...+.....
T Consensus        39 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  118 (401)
T PRK11043         39 SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQAL  118 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            55678888889999999999999999999999999999888888888877777777776666666666666666666778


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      ..|.+|++.+++..+..+....++..++|.+.+.+.+..+ ...+++.+.+.++..+...+.+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP  182 (401)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8999999989999999998889999999999999999877 45566666666655555554543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.28  E-value=1.8e-10  Score=102.71  Aligned_cols=170  Identities=9%  Similarity=-0.017  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc-ccccccccchhhHHhHhhHHHHHHhhhhhhhccccc-chhHHHHHHHHHHHHHh
Q psy10938         30 VIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCG  107 (314)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~  107 (314)
                      +..++...+...+..+.+...+|.+ .+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++..+.++..++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            3334444444455444444455544 567899999999999999999999999999999999 99999999999999998


Q ss_pred             HHHHhhh-HHHHHH--HHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHH
Q psy10938        108 IASSVAQ-YYGVFL--ALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSS  184 (314)
Q Consensus       108 ~~~~~~~-~~~~l~--~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (314)
                      ++.+..+ +...+.  +.++..|.|.-     .+....-..+..+.++.+          .....+.......++..+++
T Consensus        91 lll~~~~~~~~~~~l~l~li~iG~G~~-----~~~~~alv~elfp~~~~~----------R~sgf~i~Y~~~nlG~~iap  155 (493)
T PRK15462         91 VVLGASEIHPSFLYLSLAIIVCGYGLF-----KSNVSCLLGELYEPTDPR----------RDGGFSLMYAAGNVGSIIAP  155 (493)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcccc-----cccHHHHHHHHCCCCCcc----------ccceehHHHHHHHHHHHHHH
Confidence            7776543 222233  33444554432     112222334444332211          12234455566668999999


Q ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy10938        185 LAMPLLVHKMGAKWFLVAGLVLSSGVAMAL  214 (314)
Q Consensus       185 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~  214 (314)
                      .+.+++.+++|++..+..+.+.+.++.+..
T Consensus       156 ~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        156 IACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            999999999999988777665555555444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=7.3e-11  Score=104.93  Aligned_cols=126  Identities=12%  Similarity=-0.020  Sum_probs=110.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.+..++..++.+++.+...+....+
T Consensus        51 s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~  130 (426)
T PRK12307         51 TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY  130 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44567778888889999999999999999999999999999999998888888888888888888888888888889999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHH
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICT  290 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~  290 (314)
                      +.|.+|+++|+++.++......+|..++|.+.+.+.+..++ ..+++
T Consensus       131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            99999999999999999999999999999999888887764 34443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.28  E-value=7.1e-11  Score=106.20  Aligned_cols=140  Identities=11%  Similarity=-0.058  Sum_probs=113.8

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      +..+++.......+...++++++|+++|| +|||+++..+..+.+++.+++.+.++.+.......+.+.+.+...+...+
T Consensus        46 s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~  125 (475)
T TIGR00924        46 SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSS  125 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHH
Confidence            56678888899999999999999999999 89999999999999998888887766655555666677777778888888


Q ss_pred             eecccccchh---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        244 IMVDLFPTNL---RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       244 ~~~~~~p~~~---r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ..+|.+|+++   |+++.++.+...++|..++|.+.|.+.+..+ ...|...++..+++.+...+
T Consensus       126 ~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       126 MVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999998754   8889999999999999999999999999866 45566655555444444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03699 putative transporter; Provisional

Probab=99.27  E-value=2e-10  Score=101.15  Aligned_cols=139  Identities=10%  Similarity=0.142  Sum_probs=112.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+......++.+++.+...+.....
T Consensus        40 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  119 (394)
T PRK03699         40 PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFL  119 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHH
Confidence            45677778888889999999999999999999999999888888888888887777777777777787778778888888


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHH
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG-HC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~-~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      +.|.+|+++|+++.+..+....+++.++|.+.+.+.+. .+ ...+...+++.++..++.+
T Consensus       120 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        120 ITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888889999999999888754 34 4556665655555444333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.27  E-value=1.3e-10  Score=105.50  Aligned_cols=115  Identities=13%  Similarity=0.061  Sum_probs=98.4

Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHhhhhhch
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT------STQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  239 (314)
                      ....+.......++.+++.++.|++.||+|||+.+..+.++..++.++..+.++      .+..++..++.+++.+...+
T Consensus        55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            345567888888999999999999999999999999888888887777666554      34566777788889999999


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      ....+..|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998876553

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.26  E-value=1.5e-10  Score=101.83  Aligned_cols=145  Identities=16%  Similarity=0.023  Sum_probs=114.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+......++.+++.+...+....+
T Consensus        41 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  120 (394)
T PRK11652         41 REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTL  120 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            56677888888999999999999999999999999999888888888887777777777777777777666666666777


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH-HHhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVF-SMFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  309 (314)
                      ..|.++++.++++.+..+....++..++|.+.+.+.+..+ ...+++.++..++..+. ..+.||++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            8888888999999999999999999999999999988766 44566555554444333 34456643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.26  E-value=1.5e-10  Score=104.57  Aligned_cols=145  Identities=15%  Similarity=0.088  Sum_probs=111.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------cc---hhHHHHHHHHHHH
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV---------QT---STQNLILSCIFEA  232 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~  232 (314)
                      +..+.+...+...++..++.++.|+++||+|||+++..+..+..++.+...+.         ++   .+..++.-++.|+
T Consensus        53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~  132 (479)
T PRK10077         53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI  132 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence            56677888999999999999999999999999999999988887776655442         11   2233456677888


Q ss_pred             hhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH--------hhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        233 LTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI--------DGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~--------~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      +.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.        +..+ ...+++.++..++..+...
T Consensus       133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~  212 (479)
T PRK10077        133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY  212 (479)
T ss_pred             hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999887766553        2234 4456665555555555555


Q ss_pred             hcccCC
Q psy10938        304 FLPATG  309 (314)
Q Consensus       304 ~~~~~~  309 (314)
                      ++||+.
T Consensus       213 ~l~~s~  218 (479)
T PRK10077        213 FVPETP  218 (479)
T ss_pred             cCCCCc
Confidence            667754

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.25  E-value=8.8e-11  Score=105.66  Aligned_cols=144  Identities=13%  Similarity=0.053  Sum_probs=118.0

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhch
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV--QTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      .+.+..+.+...+.+.++..++.+..|++.||+|+|+.+..+.++..+..++..+.  .+.+..++..++.+++.+...+
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~  150 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSP  150 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchh
Confidence            35577788889999999999999999999999999999998888877776665433  3445566667788888999999


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH-C-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.. + ...|++.+++.++..++.+..
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999874 6 556766666665555544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.25  E-value=2e-10  Score=101.08  Aligned_cols=118  Identities=16%  Similarity=0.017  Sum_probs=107.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.+..|++.||+|||+++..+..+.+++.+...+.++.+..+...++.+++.+...+.....
T Consensus        42 s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~  121 (393)
T PRK09705         42 SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSV  121 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHH
Confidence            66778888999999999999999999999999999999999999999999999998888888888888888888888888


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      +.|.+| ++|+++.|+.......|..+++.+.+.+.++.
T Consensus       122 ~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~  159 (393)
T PRK09705        122 IKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS  159 (393)
T ss_pred             HHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888887 77999999999999999999999999988875

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=1.6e-10  Score=104.89  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=108.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.+......++.+++.+...+....+
T Consensus        53 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  132 (496)
T PRK03893         53 TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATY  132 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777888888999999999999999999999999998888888888888777777777788888888888888899


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHH
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLIL  287 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~  287 (314)
                      +.|.+|++.|+++.++.+....+|..++|.+.+.+.+..++..
T Consensus       133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893        133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            9999999999999999999999999999999999998877443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.24  E-value=9e-11  Score=104.08  Aligned_cols=144  Identities=15%  Similarity=0.025  Sum_probs=109.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHhhhhhch
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY-----VQTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +..+.+.......++..++.++.|+++||+|||+.+..+..+.+++.+....     .++.+......++.+++.+...+
T Consensus        50 s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  129 (417)
T PRK10489         50 STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVT  129 (417)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999999999999888777666665544322     23344445555556666666677


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      .......|.+|+++|+++.++.+...++|..++|.+.|.+.+..+ ...+++.+...+++.+....+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (417)
T PRK10489        130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL  199 (417)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            788899999999999999999999999999999999999998766 445555555555555555555654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.4e-09  Score=94.95  Aligned_cols=234  Identities=15%  Similarity=0.133  Sum_probs=166.3

Q ss_pred             ccccccccccccchhhHHhHhhHHHHHHhhhhhhhccc----ccchhHH-HHHHHHHHHHHhHHHHhhhH------HHHH
Q psy10938         51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKIT-LIGALLVDGLCGIASSVAQY------YGVF  119 (314)
Q Consensus        51 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l  119 (314)
                      +-.+....|+++..+|.+..+.=+--++.-|+.|.++|    |+||+|. ++.+.+..++...++..+++      ....
T Consensus        36 l~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya  115 (467)
T COG2211          36 LFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA  115 (467)
T ss_pred             HHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence            33445668999999999999999999999999999999    5886665 57777888888888887774      3334


Q ss_pred             HHHHHHhhcccC----C---------------------------------------------------------------
Q psy10938        120 LALRFINGFASR----P---------------------------------------------------------------  132 (314)
Q Consensus       120 ~~~r~l~G~~~~----P---------------------------------------------------------------  132 (314)
                      ++...+.+++..    |                                                               
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi  195 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI  195 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence            455566666666    2                                                               


Q ss_pred             -----------C-CCCCccc------chhhhh----hhcCCcCCCcCcc--------------------cccCCCChhHH
Q psy10938        133 -----------L-IPGHPGK------VASVCD----VSALQPADNSTVA--------------------TCSGEVNPEVF  170 (314)
Q Consensus       133 -----------l-~~~~~~~------~~~~~~----~~~~~~~~~~~~~--------------------~~~~~~~~~~~  170 (314)
                                 . |+..+..      +.+..+    .+++++.......                    ...+.......
T Consensus       196 ~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~  275 (467)
T COG2211         196 GVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAY  275 (467)
T ss_pred             HHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHH
Confidence                       0 1111010      011111    1111111000000                    34455566666


Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHhhhhhchhheeeeccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT--STQNLILSCIFEALTGCCISVVYCIMVDL  248 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      ........+.+++.++...+.+|+|+|+++.++.++..++.+.+.+.+.  .+..++..++.+++.+...+..++.++|.
T Consensus       276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~  355 (467)
T COG2211         276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADT  355 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcch
Confidence            7777777778888999999999999999999999999999999888873  33344444667788888899999999888


Q ss_pred             ccc-------hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh
Q psy10938        249 FPT-------NLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC  284 (314)
Q Consensus       249 ~p~-------~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~  284 (314)
                      .+-       +..|...|....+.-+|.+++..+.|.+.+..|
T Consensus       356 vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         356 VDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             hhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            642       345888899999999999999999999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=2.3e-11  Score=103.10  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=131.1

Q ss_pred             ccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchh
Q psy10938        161 CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +.+.+..+.+.+.+.+.+...++..+.|.++||.+.|..+..+.++++++.+++.+.++.+...++..+-+.+.+..+|.
T Consensus        58 ~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp  137 (448)
T COG2271          58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPP  137 (448)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcH
Confidence            34467889999999999999999999999999999999999999999999999999998888888888899999999999


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHH--HHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMF--GFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~--g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ....+...+|+++||+..++-|+..++|+.+.|.+.  +.+.++.+ ...|++-+++.++.+++.+++
T Consensus       138 ~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         138 CARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             HHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999  88888866 667777788777777766654

>KOG2325|consensus

Probab=99.23  E-value=9.7e-12  Score=108.62  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cccccchhhHHhHhhHHHHHHhhhhhhhcccccch-hHHHHH
Q psy10938         22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIG   98 (314)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~   98 (314)
                      .++.+|+.+.+..+..++.......+.+-.-++.++  .+.+.+..|++.++..++.++++++.|+...|.+. |+.++.
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            455678888888888888888887776655445555  67777889999999999999999999999999996 888999


Q ss_pred             HHHHHHHHhHHH-Hh---hh-HHHHHHHHHHHhhcccC
Q psy10938         99 ALLVDGLCGIAS-SV---AQ-YYGVFLALRFINGFASR  131 (314)
Q Consensus        99 ~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~~  131 (314)
                      +.++..++.++. ..   .+ .-+.++++|++.|+|.+
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~  145 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG  145 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc
Confidence            999999999988 33   23 67889999999999988

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.23  E-value=2.2e-10  Score=100.34  Aligned_cols=149  Identities=11%  Similarity=-0.006  Sum_probs=107.7

Q ss_pred             HHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHh
Q psy10938         47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (314)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  126 (314)
                      +....|.+.+|+|.++.+.|++.+...++..++.++++++.||+|+|+.+..+.+...+..++.++++|++++++.+++.
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~  303 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            33445656677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH
Q psy10938        127 GFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL  206 (314)
Q Consensus       127 G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  206 (314)
                      |+..+       --.....+..++.++..        ....+........+++..+++.++|++.|++|. ........+
T Consensus       304 g~~~~-------~~~~~~~~~i~~~~~~~--------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~  367 (382)
T TIGR00902       304 CGTFA-------VCHLAAMRYIAAQPGSE--------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII  367 (382)
T ss_pred             HHHHH-------HHHHHHHHHHHhCCHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence            99887       11111111111111000        011122223345678899999999999999986 444444444


Q ss_pred             HHHHH
Q psy10938        207 SSGVA  211 (314)
Q Consensus       207 ~~~~~  211 (314)
                      ..+++
T Consensus       368 ~~~~~  372 (382)
T TIGR00902       368 AAAAF  372 (382)
T ss_pred             HHHHH
Confidence            44443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=99.22  E-value=2.4e-10  Score=100.56  Aligned_cols=124  Identities=12%  Similarity=-0.090  Sum_probs=98.1

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---Hh-----cchhHHHHHHHHHHHhhh
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY---YV-----QTSTQNLILSCIFEALTG  235 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~  235 (314)
                      .+..+.+...+...+...+++++.|+++||+|||+.+..+.+...++.+...   ..     ++.+..++..++.+.+.+
T Consensus        48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  127 (392)
T PRK12382         48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGES  127 (392)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999999888776665443221   11     233444555566777777


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHH
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLIL  287 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~  287 (314)
                      ...+...++..|..|+++|+++.++.......|..++|.+.+.+.+..++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (392)
T PRK12382        128 QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA  179 (392)
T ss_pred             HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            6677777888899999999999999999889999999999999988777443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.22  E-value=2.3e-10  Score=102.06  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhchhhe
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQT-STQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +..+++...........++.+++|+++||+ |||+.+..+.++..++.+++....+ .........+...+.+...+...
T Consensus        43 s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~  122 (493)
T PRK15462         43 DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVS  122 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHH
Confidence            455677777788888889999999999999 9999999999888888766554322 12222222333345555566677


Q ss_pred             eeecccccch--hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy10938        243 CIMVDLFPTN--LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS  302 (314)
Q Consensus       243 ~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~  302 (314)
                      ++..|.+|++  .|.++.++.+...++|+.++|.+.|.+.+..+ ...|.+.++..+++.+..
T Consensus       123 alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        123 CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            8899999875  68999999999999999999999999998877 455666555444444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.22  E-value=5.8e-10  Score=100.54  Aligned_cols=145  Identities=14%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhch
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +..+.+..+.+...+...++..++.++.|++.||+|||+++..+.++.++..++..+.++.+..++..++.+++.+... 
T Consensus        64 ~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-  142 (476)
T PLN00028         64 DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-  142 (476)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-
Confidence            3456667777777888888899999999999999999999998888888888877777777766666666676655433 


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh---------hh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG---------HC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~---------~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ....++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+.         .+ ...|++.+++.++..+...++
T Consensus       143 ~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        143 SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445788999999999999999988888888887777655431         23 456667676666655555444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.22  E-value=1.6e-10  Score=101.84  Aligned_cols=123  Identities=10%  Similarity=-0.162  Sum_probs=98.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---c-----chhHHHHHHHHHHHhhhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV---Q-----TSTQNLILSCIFEALTGC  236 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~  236 (314)
                      +..+.+...+...++..++.++.|+++||+|||+++..+..+.++..+...+.   +     +.+..+...++.+.+.+.
T Consensus        49 s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  128 (399)
T PRK05122         49 SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL  128 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh
Confidence            56678888999999999999999999999999999999887776654443322   2     122344555677777777


Q ss_pred             hchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHH
Q psy10938        237 CISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLIL  287 (314)
Q Consensus       237 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~  287 (314)
                      ..+....+..|..|+++|+++.++......+|..++|.+.+.+.+..++..
T Consensus       129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~  179 (399)
T PRK05122        129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG  179 (399)
T ss_pred             hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence            778778888999999999999999998889999999999999998877443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.21  E-value=4.8e-10  Score=98.24  Aligned_cols=119  Identities=10%  Similarity=-0.073  Sum_probs=104.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..+..+...+.++.+..+...++.+++.+...+.....
T Consensus        39 s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  118 (381)
T PRK03633         39 PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESA  118 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688899999999999999999999999999999999999998888888888888777777778888877777777777


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      ..+..++++|+++.+..+...++|..++|.+.+.+.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        119 LMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            778888899999999999999999999999999887754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.21  E-value=2e-10  Score=100.01  Aligned_cols=138  Identities=14%  Similarity=0.059  Sum_probs=111.8

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.+..|.+.||+|||+.+..+..+.+++.+...+.++.+..+....+.+++.+..++.....
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  115 (377)
T TIGR00890        36 GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNT  115 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence            56778889999999999999999999999999999999999999988888888887777777777777777776666677


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      ..|.+| ++|+++.++......+|..+++++.+.+.+..+ ...+++.+++.++..+..+
T Consensus       116 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890       116 AVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            777776 579999999999999998887777777777665 4566666666655554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=2.6e-10  Score=102.51  Aligned_cols=144  Identities=15%  Similarity=-0.003  Sum_probs=113.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHhhhhhchhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS---TQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.++..+..+.   +..++..++.+++.+...+..
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence            46678888999999999999999999999999999999888888877777554432   356666777888888888888


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHH---HHHHhhhh-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMF---GFLIDGHC-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~---g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      ..++.|.+|+++|+++.++.+....+|..++|.+.   +...+..+ ...+++.+...++..+...++||+
T Consensus       149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~  219 (481)
T TIGR00879       149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPES  219 (481)
T ss_pred             HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999998   54445445 445555444444444444555664

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.20  E-value=4.8e-10  Score=99.05  Aligned_cols=138  Identities=21%  Similarity=0.114  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccc
Q psy10938        169 VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDL  248 (314)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      .+...+...+...++.++.|+++||+|||+.+..+.....++.++..+.++.+..++..++.+++. ...+.......+.
T Consensus        56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~  134 (408)
T PRK09874         56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANALIATQ  134 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHh
Confidence            466777888889999999999999999999999988888888877777767666666666666543 3456666788889


Q ss_pred             ccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hccc
Q psy10938        249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPA  307 (314)
Q Consensus       249 ~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  307 (314)
                      .|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+.+.++..+... +.+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (408)
T PRK09874        135 VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRE  195 (408)
T ss_pred             cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999988776 4556666666555555443 3344

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.20  E-value=4.5e-10  Score=98.04  Aligned_cols=144  Identities=12%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVA-GLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      +..+.+...+...+...+..++.|.++||+|||+.+.. +.....++.++..+.++.+..+....+.+.+.+...|....
T Consensus        31 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~  110 (375)
T TIGR00899        31 RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFA  110 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            56678888888888888889999999999998876554 45555555566666666665555445555555566677777


Q ss_pred             eecccccchhhHHH--HHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh-cccC
Q psy10938        244 IMVDLFPTNLRVLA--AALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF-LPAT  308 (314)
Q Consensus       244 ~~~~~~p~~~r~~~--~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~  308 (314)
                      +..|..|++.|+.+  .+.......+|..++|.+.+.+.+..+ ...+++.+.+.++..+...+ +||.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  179 (375)
T TIGR00899       111 LAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY  179 (375)
T ss_pred             HHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            77888777666644  577778888999999999999998876 55677767666665555443 5654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.19  E-value=5.8e-10  Score=97.31  Aligned_cols=146  Identities=14%  Similarity=0.085  Sum_probs=122.6

Q ss_pred             ccCCCChh-HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhch
Q psy10938        161 CSGEVNPE-VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      ..+.+..+ .+.+...+..+..+..+.+|+++||+|.|+++..+.+.-.+..++..+..+...+.+.-++.|++.+..+ 
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-  133 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-  133 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34556667 8888999999999999999999999999999999999999999999998888888889999999999999 


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHhcccC
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLI----LICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      ....++.+.+|+++|+++.|+.+....+|.++++++.+.+. ..++.    ..++......++.++.+++|..
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~  205 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFMTFSVFLALFLKRP  205 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            88999999999999999999999999999999999999844 44422    2334444455556667777743

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11462 putative transporter; Provisional

Probab=99.19  E-value=1.6e-09  Score=97.15  Aligned_cols=233  Identities=12%  Similarity=0.016  Sum_probs=136.8

Q ss_pred             ccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc----cchhHHH-HHHHHHHHHHhHHHHhhhH------HHHH
Q psy10938         51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKITL-IGALLVDGLCGIASSVAQY------YGVF  119 (314)
Q Consensus        51 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l-~~~~~~~~~~~~~~~~~~~------~~~l  119 (314)
                      ...+.+..|+++..+|.+..+.-+.-++..|+.|.++||    +||||.. +.+....+++.++....|+      ...+
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~  112 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA  112 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            444556789999999999999999999999999999995    7887654 5676777777666554442      2334


Q ss_pred             HHHHHHhhcccC----C---------------------------------------C-----------------------
Q psy10938        120 LALRFINGFASR----P---------------------------------------L-----------------------  133 (314)
Q Consensus       120 ~~~r~l~G~~~~----P---------------------------------------l-----------------------  133 (314)
                      .+.-++..++..    |                                       +                       
T Consensus       113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii  192 (460)
T PRK11462        113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV  192 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            444444444443    2                                       0                       


Q ss_pred             ------------CCCC-cc-cchhhhhhh----cCCcCCCcCcc-------------------cccCCCChhHHHHHHHH
Q psy10938        134 ------------IPGH-PG-KVASVCDVS----ALQPADNSTVA-------------------TCSGEVNPEVFSHTLII  176 (314)
Q Consensus       134 ------------~~~~-~~-~~~~~~~~~----~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  176 (314)
                                  +++. ++ ++.+..+..    ++++.+.....                   .................
T Consensus       193 ~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~  272 (460)
T PRK11462        193 AFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTY  272 (460)
T ss_pred             HHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHH
Confidence                        1100 00 000011111    11100000000                   11111222233445566


Q ss_pred             HhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhhhhchhheeeeccccc----
Q psy10938        177 GLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS--TQNLILSCIFEALTGCCISVVYCIMVDLFP----  250 (314)
Q Consensus       177 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----  250 (314)
                      .+..+++..+++++.||+++|+.......+..+..+++.+.++.  .......++.+++.+...+..++..+|..+    
T Consensus       273 ~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~  352 (460)
T PRK11462        273 CVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW  352 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Confidence            77888899999999999999988765554444433333333332  223333444555555555555666776654    


Q ss_pred             ---chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        251 ---TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       251 ---~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                         .+..|...+.......+|..+++.+.|.+.+..
T Consensus       353 ~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        353 CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               233355567777888899999999999988753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.19  E-value=5.6e-10  Score=97.11  Aligned_cols=116  Identities=16%  Similarity=0.183  Sum_probs=97.5

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-TSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      +..+.++......++..++.++.|++.||+|||+.+..+..+..++.++..+.+ +.+...+..++.+++. ...+....
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~  113 (366)
T TIGR00886        35 STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMP  113 (366)
T ss_pred             CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHH
Confidence            566778888899999999999999999999999999999999999888888877 7666666666666653 34455677


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      ++.|.+|+++|+++.++.....++|..+++.+.+.+.+
T Consensus       114 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       114 WISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            89999999999999999998888888888888877765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.18  E-value=5.5e-10  Score=98.27  Aligned_cols=152  Identities=11%  Similarity=0.007  Sum_probs=105.6

Q ss_pred             hcc-ccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhc
Q psy10938         50 VLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF  128 (314)
Q Consensus        50 ~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  128 (314)
                      ..| .+++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++++.+++.+++.++
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  317 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI  317 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344 3456789999999999888888888999999999999999998887776666555555567788888888887776


Q ss_pred             ccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHH
Q psy10938        129 ASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSS  208 (314)
Q Consensus       129 ~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  208 (314)
                      +.+   -..........+..+++             .....+.......++..+++.++|.+.|++|.+..+........
T Consensus       318 ~~g---~~~~~~~~~~~~~~p~~-------------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~  381 (393)
T PRK15011        318 YIG---ILGGIGMLYFQDLMPGQ-------------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMII  381 (393)
T ss_pred             HHH---HHHHHHHHHHHHhCCCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            554   00000001111222111             23344455556778899999999999999998888777776666


Q ss_pred             HHHHHHHHh
Q psy10938        209 GVAMALYYV  217 (314)
Q Consensus       209 ~~~~~~~~~  217 (314)
                      ++++...+.
T Consensus       382 ~~~~~~~~~  390 (393)
T PRK15011        382 ATLFCLLRI  390 (393)
T ss_pred             HHHHHHHhh
Confidence            666655544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=1e-09  Score=96.98  Aligned_cols=119  Identities=12%  Similarity=0.098  Sum_probs=99.8

Q ss_pred             ccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHhhh
Q psy10938        161 CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV-----QTSTQNLILSCIFEALTG  235 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  235 (314)
                      ..+.+..+.+...++..+...+.++..|++.||+|.|++...+..+..+..+...+.     ++.+..++..++.+++ +
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            567788889999999999999999999999999999999999988888888877765     5666777777777775 6


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      ..++.....+.+.+|+++||++.|+....+++|..+++++.+.+.
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            678888889999999999999999998778888877766665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.18  E-value=5.1e-10  Score=101.31  Aligned_cols=136  Identities=13%  Similarity=0.013  Sum_probs=104.4

Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHHhhhhhchhheee
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQ--------NLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      .+...++..+|.++.|++.||+|||+++..+.++.+++.++..+.++...        ....-++.|++.+..++....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            45666788899999999999999999999999999999999988887643        4556677888889999999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh--------hhh-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID--------GHC-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      +.|.+|+++|++..++......+|..+++.+...+..        ..+ ...|++.+.+.+++.++...+||+
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~es  215 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEET  215 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999888777888887766544432        334 445655444444433333345664

>KOG1330|consensus

Probab=99.17  E-value=7e-12  Score=107.20  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=128.8

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      .+.++...+++.....+...+..++.|++.||++|++++..+..+-.++.+...+..+.|...+.-.+.|++.....|..
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia  142 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIA  142 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccc
Confidence            34467778888999999999999999999999999999999999999999998888889999999999999999999999


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhc-ccCC
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSMFL-PATG  309 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~  309 (314)
                      +++++|.+|.++|++++++.+....+|+.+|-+.++.+.+..+  ...+...+++.++.+++..+. +|.+
T Consensus       143 ~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  143 PSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999999888888887765  445667777777777665544 4443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=5e-10  Score=100.39  Aligned_cols=140  Identities=15%  Similarity=0.069  Sum_probs=106.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILS-CIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  243 (314)
                      +..+.+...+...+...++.++.|+++||+|||+.+..+.++..+..++..+.++.+..+... ++.+++.+...+....
T Consensus        52 s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~  131 (455)
T TIGR00892        52 TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT  131 (455)
T ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            445566667777777788888999999999999999998888888887777776666554433 4556666655555566


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      .+.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..+ ...|++.+++.+++.+..+++
T Consensus       132 ~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       132 MLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            7778885 789999999999999999999999999999877 566777777666555444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.17  E-value=6.1e-10  Score=99.25  Aligned_cols=137  Identities=12%  Similarity=-0.050  Sum_probs=102.1

Q ss_pred             HHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchh--------HHHHHHHHHHHhhhhhchhhee
Q psy10938        172 HTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTST--------QNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      ......++..++.++.|++.||+|||+.+..+..+..++.+...+.++..        .....-++.|++.+..++...+
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~  147 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT  147 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence            34455566679999999999999999999999999998888887776542        3555667788888889999999


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh--------hhh-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID--------GHC-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      ++.|.+|+++|++..++.+.....|..+++.+...+..        ..+ ...|++.++..++...+...+||+
T Consensus       148 ~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~  221 (432)
T PRK10406        148 YMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET  221 (432)
T ss_pred             HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999998887777887877776554432        334 455666555555443333334554

>TIGR00897 2A0118 polyol permease family

Probab=99.17  E-value=8.1e-10  Score=97.50  Aligned_cols=120  Identities=13%  Similarity=-0.011  Sum_probs=95.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---Hh-cchhHHHHHHHHHHHhhhhhchh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY---YV-QTSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.++..   .. ++.+..+....+.+++.+...+.
T Consensus        46 s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~  125 (402)
T TIGR00897        46 SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYS  125 (402)
T ss_pred             CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhH
Confidence            566788888999999999999999999999999999988888877765432   22 24444445555556666656666


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhh-hhHHHHHHHHHhhhh
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGG-LTGNLMFGFLIDGHC  284 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~p~~~g~l~~~~~  284 (314)
                      ......+.+|+++|+++.|+.+....+|. .++|.+.+.+.+..+
T Consensus       126 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       126 FLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            66778888999999999999999999986 589999999888766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.16  E-value=1.8e-08  Score=87.69  Aligned_cols=251  Identities=13%  Similarity=0.054  Sum_probs=164.5

Q ss_pred             ccccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHHHhHHHHhhh--HHHHHHHHHHHhhcccC
Q psy10938         55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQ--YYGVFLALRFINGFASR  131 (314)
Q Consensus        55 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~  131 (314)
                      .+.+|.|+++..-+.+.|..-.-+..+++|+++|| +|+|+.+..+.++..+|.++.+.+.  +...+.++-.+.++|.|
T Consensus        53 ~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~G  132 (498)
T COG3104          53 GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG  132 (498)
T ss_pred             cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccc
Confidence            33355999999888888888888899999999999 7999999999999999999999884  78889999999999999


Q ss_pred             ---C-------------------------------------------------------------------C--------
Q psy10938        132 ---P-------------------------------------------------------------------L--------  133 (314)
Q Consensus       132 ---P-------------------------------------------------------------------l--------  133 (314)
                         |                                                                   +        
T Consensus       133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence               1                                                                   0        


Q ss_pred             ---CCCCcccchh-----------------------------------------hhhhhcCCcCCCcCcc----------
Q psy10938        134 ---IPGHPGKVAS-----------------------------------------VCDVSALQPADNSTVA----------  159 (314)
Q Consensus       134 ---~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~----------  159 (314)
                         ++..+.....                                         ..+..+.++..+.+.+          
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~  292 (498)
T COG3104         213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLF  292 (498)
T ss_pred             CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHH
Confidence               0000000000                                         0000000010000000          


Q ss_pred             ----------------------cccC--CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH-------HHHHHHHHHHH
Q psy10938        160 ----------------------TCSG--EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK-------WFLVAGLVLSS  208 (314)
Q Consensus       160 ----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~  208 (314)
                                            .+++  .......+..++..+.-++..++..++..|.+++       .-+..+..+++
T Consensus       293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g  372 (498)
T COG3104         293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAG  372 (498)
T ss_pred             HHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHH
Confidence                                  0111  1234556667777777777777777777774432       23445566666


Q ss_pred             HHHHHHHHh----------cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHH
Q psy10938        209 GVAMALYYV----------QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGF  278 (314)
Q Consensus       209 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~  278 (314)
                      .+++++...          .+.++.+...++..++.-...|+..+++..+.|++..+..++........++.++..+.+.
T Consensus       373 ~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~  452 (498)
T COG3104         373 LGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL  452 (498)
T ss_pred             HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            666555443          1345566677778889999999999999999999999999998888777777777766652


Q ss_pred             ------HHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        279 ------LIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       279 ------l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                            ..+... ...|+..+...++..+....+
T Consensus       453 ~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         453 TAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence                  222222 445666666665555554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=3.2e-10  Score=101.19  Aligned_cols=143  Identities=17%  Similarity=0.140  Sum_probs=108.4

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHhhhhhchh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +..+.++..+...++..++.+..|++.||+|||+.+..+.++.+++.+.....+    +.+......++.+++.+..++.
T Consensus        59 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~  138 (438)
T TIGR00712        59 SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPP  138 (438)
T ss_pred             CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHH
Confidence            456678888899999999999999999999999998888888877777665442    2333344455667777777777


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHH-Hhccc
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG-HC-LILICTLAAMLLIAGVFS-MFLPA  307 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~  307 (314)
                      ....+.|.+|+++|+++.|+.+....+|+.++|.+.+...+. .+ ...+++.+++.++..+.. .++||
T Consensus       139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            778889999999999999999999999999999888765553 34 456666666666654443 34454

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.15  E-value=1.8e-09  Score=95.35  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=100.8

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhchhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV---QTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      +..+.+...+...++..++.+..|++.||+|||+.+..+..+.+++.++....   ++.+......++.+.+.+...+..
T Consensus        36 s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~  115 (410)
T TIGR00885        36 TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAA  115 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhh
Confidence            56778889999999999999999999999999999999999988887775433   345556666777888888888888


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      +.++.+..|+++|++..++.+....+|..++|.+.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       116 NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999998885

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.14  E-value=3e-09  Score=89.20  Aligned_cols=223  Identities=19%  Similarity=0.143  Sum_probs=132.5

Q ss_pred             HHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHh
Q psy10938         47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (314)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  126 (314)
                      .+|..-.+-+++|.++.|++.+....+....+..++.|.++||+|||+.-+..+++.+++.+ .-..++++.++++|++.
T Consensus        53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlg  131 (354)
T PF05631_consen   53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLG  131 (354)
T ss_pred             hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHH
Confidence            34443344468999999999999999999999999999999999999999999999988875 55678999999999999


Q ss_pred             hcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHH-HHHHhhhhhHHhHHHHHHHHhh--hHHHHHHH
Q psy10938        127 GFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHT-LIIGLACIPSSLAMPLLVHKMG--AKWFLVAG  203 (314)
Q Consensus       127 G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~  203 (314)
                      |++.+=|.    ..-+.+--..+++..-      ..+.....-.... ...++..+.+.+++-+++|+.+  ++.....+
T Consensus       132 GiaTSLLf----S~FEsW~V~Eh~~~g~------~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a  201 (354)
T PF05631_consen  132 GIATSLLF----SAFESWMVHEHNKRGF------PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA  201 (354)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence            99987000    0000000000000000      0000111222222 2345566777777778888775  46667766


Q ss_pred             HHHHHHHHHHHHHh--cch-----------------------hHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHH
Q psy10938        204 LVLSSGVAMALYYV--QTS-----------------------TQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAA  258 (314)
Q Consensus       204 ~~~~~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~  258 (314)
                      ..+..++.++....  .|.                       ...+.+..+-..+.+..+.-...+.+-+-|. .+..=.
T Consensus       202 ~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~-~~~~P~  280 (354)
T PF05631_consen  202 IVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD-DEELPL  280 (354)
T ss_pred             HHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC-CCCCCc
Confidence            66666666554321  110                       1122233333445555544444444443332 122335


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        259 ALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       259 g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      |+..........+|+.+...+.+
T Consensus       281 GlIFssFM~a~MlGS~lf~~l~s  303 (354)
T PF05631_consen  281 GLIFSSFMVAMMLGSSLFSRLLS  303 (354)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555556666666655544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.14  E-value=8.4e-10  Score=99.48  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=101.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHhhhhhchhhe
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTSTQ-NLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +..++......+........+++|+++|| +|||+++..+.++..++.+...+..+... .++...+.+.+.+...+...
T Consensus        48 ~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~  127 (489)
T PRK10207         48 SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPA  127 (489)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHH
Confidence            34445555666666666677899999999 99999999999999998888777654333 33445556777888888889


Q ss_pred             eeecccccch--hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhH-HHHHHHHHHHH
Q psy10938        243 CIMVDLFPTN--LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCL-ILICTLAAMLL  296 (314)
Q Consensus       243 ~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~-~~~~~~~~~~~  296 (314)
                      +.+.|.+|++  .|++++++.+...++|..++|.+.|++.++.++ ..|++.++..+
T Consensus       128 ~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        128 SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            9999999877  457789999999999999999999999998874 45555443333

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=2e-09  Score=93.37  Aligned_cols=120  Identities=14%  Similarity=0.007  Sum_probs=98.2

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      .+.+..+.+...+...++..++.+..|++.||+|||+.+..+.++..++.+.. ..++.+..+...++.+++.+...+..
T Consensus        30 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~  108 (355)
T TIGR00896        30 LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLL  108 (355)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccc
Confidence            34567788999999999999999999999999999999988887777666655 55666666666666777776666666


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .....|.+| ++|+++.++.+....+|..++|.+.+.+.+..
T Consensus       109 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896       109 PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            677788776 67999999999999999999999999888764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.11  E-value=2.7e-10  Score=102.49  Aligned_cols=139  Identities=12%  Similarity=0.019  Sum_probs=109.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHhhhhhch
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY-----VQTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +..+.++..+.+.++..++.++.|+++||+|+|+++..+.++.++..+....     .++.+..+...++.+++.+...+
T Consensus        62 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  141 (467)
T PRK09556         62 STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGP  141 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccch
Confidence            5667888888899999999999999999999999998887777766655544     35666666777778888888888


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh---h-HHHHHHHHHHHHHHHHHHH
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH---C-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~---~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      ....++.|.+|+++|+++.|+.+....+|.++++.+...+.+..   + ...+.+.+++.++..++.+
T Consensus       142 ~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        142 CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999887776643   2 2344554555544444433

>KOG0255|consensus

Probab=99.11  E-value=1.6e-09  Score=98.94  Aligned_cols=143  Identities=16%  Similarity=0.124  Sum_probs=119.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +........+++.++..+|+++.|.++||+|||+++..+..+..++.+...+.++.+...+.-++.|++.++...+.+.+
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~  195 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL  195 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence            44566677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (314)
                      ..|.++++.|+.+..+ ......++..+|...+++.+. ....+++..+...+..+..++.+|.+
T Consensus       196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~-Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRD-WRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            9999999999999999 888888899999999888883 23344444444444434433334643

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.10  E-value=9.5e-10  Score=97.66  Aligned_cols=142  Identities=13%  Similarity=-0.023  Sum_probs=100.6

Q ss_pred             cccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCC
Q psy10938         56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIP  135 (314)
Q Consensus        56 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~  135 (314)
                      ++.+.+..+.|++.++..++..++++++|++.||+|||+.+..+..+.+++.++.++++|++.+++.+++.|++.+   -
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~---~  331 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVP---F  331 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---H
Confidence            3346677788999999999999999999999999999999999999999998888899999999999999998775   0


Q ss_pred             CCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy10938        136 GHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVA  211 (314)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~  211 (314)
                      -.........+..+.+. +          .............++.++++.+.|++.|.+|.+..+.....+..+..
T Consensus       332 ~~~~~~~~~~~~~~~~~-~----------a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        332 LLVGVFKYITLNFDVRL-S----------ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             HHHHHHHHHHHHcCccc-e----------eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            00000011111111110 0          11111113445668888999999999999998877766555544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.09  E-value=1.8e-09  Score=96.73  Aligned_cols=144  Identities=16%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHhhhhhchh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +..+.+...+...++..++.++.|+++||+|||+++..+.++.++..+...+.+    +.+..+...++.+++.+...+.
T Consensus        61 s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~  140 (452)
T PRK11273         61 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP  140 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchH
Confidence            456788888899999999999999999999999999999888888877776643    3344455556677777777777


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhh-HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH-HHhcccC
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLT-GNLMFGFLIDGHC-LILICTLAAMLLIAGVF-SMFLPAT  308 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  308 (314)
                      ......|.+|+++|+++.|+.+....+|+.+ +|.+...+....+ ...+++.+.+.++..++ .+++||+
T Consensus       141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        141 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            7777889999999999999999998888754 4544323322223 44566655555554433 3444543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.08  E-value=3.5e-09  Score=95.64  Aligned_cols=141  Identities=18%  Similarity=0.084  Sum_probs=112.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHhhhhhch
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV-----QTSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      ++...++......+-.++..+++|.++||++||+++..+-.+.++..+.+...     .+.+..+.+.++.+.+.....|
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P  122 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP  122 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            55667777788888888899999999999999999998887776554443322     2556677777888888888899


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ..++.++|++|+++...+.++.+...++...+||.++|.+....| ...|.+-++..++........
T Consensus       123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999888 455655555554444333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.07  E-value=7.4e-10  Score=82.14  Aligned_cols=133  Identities=20%  Similarity=0.168  Sum_probs=97.7

Q ss_pred             HHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCCCCcccchhhhh
Q psy10938         67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCD  146 (314)
Q Consensus        67 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~  146 (314)
                      ++.+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+   ...+.......|
T Consensus         2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~   78 (141)
T TIGR00880         2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAA---FALVAGAALIAD   78 (141)
T ss_pred             EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHHhHHHHHHH
Confidence            34567788999999999999999999999999999999999988889999999999999999876   111111111222


Q ss_pred             hhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy10938        147 VSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL  214 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~  214 (314)
                      ..+++.            .....+.......++..++..+.+.+.|..+++...........+..+..
T Consensus        79 ~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        79 IYPPEE------------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HCChhh------------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            222111            23455566677788889999999999999888877666555554444433

>PRK09952 shikimate transporter; Provisional

Probab=99.07  E-value=3.1e-09  Score=94.88  Aligned_cols=123  Identities=12%  Similarity=0.015  Sum_probs=97.2

Q ss_pred             HHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchh--------HHHHHHHHHHHhhhhhchhheeeec
Q psy10938        175 IIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTST--------QNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       175 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      ...++..++.++.|++.||+|||+.+..+..+.+++.++..+.++..        ..+..-++.+++.+..++....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            34466778889999999999999999999999999999988888754        2455567788888888888889999


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh--------hhh-HHHHHHHHHHHHH
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID--------GHC-LILICTLAAMLLI  297 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~--------~~~-~~~~~~~~~~~~~  297 (314)
                      |.+|+++|++..+..+....+|..+++.+.+.+..        ..+ ...|++.++..++
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            99999999999999888888888888777766543        234 4456555544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.06  E-value=1.8e-09  Score=94.58  Aligned_cols=131  Identities=12%  Similarity=-0.004  Sum_probs=95.5

Q ss_pred             ccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhccc
Q psy10938         51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAS  130 (314)
Q Consensus        51 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  130 (314)
                      .|.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+....+++.++..++++++.+++..++.|++.
T Consensus       228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  307 (382)
T PRK11128        228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTF  307 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            34455678999999999999999999999999999999999999999999999998888888999999999999999987


Q ss_pred             CCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHH-HHHHhhhhhHHhHHHHHHHHhhhH
Q psy10938        131 RPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHT-LIIGLACIPSSLAMPLLVHKMGAK  197 (314)
Q Consensus       131 ~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~  197 (314)
                      +       -......+..++.+..        + .....+... .....+..+|+.++|++.|++|..
T Consensus       308 ~-------~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~  359 (382)
T PRK11128        308 T-------VCHLAAMRYIAARPGS--------E-VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG  359 (382)
T ss_pred             H-------HHHHHHHHHHHHCCHh--------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            6       1111111111111100        0 111122222 233456678999999999999874

>KOG2532|consensus

Probab=99.04  E-value=8e-09  Score=91.79  Aligned_cols=143  Identities=14%  Similarity=0.070  Sum_probs=126.6

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhchh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ--TSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      ..+..+.+.+.+....+.+++.+.++++.||+|-|+++..+.++.++..++..+..  +.+..++.-++.|++.+..+|.
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa  148 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPA  148 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhh
Confidence            44777888999999999999999999999999999999999999999888887654  3446677888899999999999


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG-HC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~-~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ......+..|+++|++..++.....++|.+++-++.|.+.+. .| ...|++.+++.++..++++++
T Consensus       149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 66 678888888888877766554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.03  E-value=7.7e-09  Score=88.01  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHhhhhhch
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTST---QNLILSCIFEALTGCCIS  239 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  239 (314)
                      +.+..+.+++..+..+.+.+.++.-|.+.||+|.|+....+.++..+-++...+..+.+   ..++..++.+ ..++.+.
T Consensus        45 ~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G-~~GasFa  123 (417)
T COG2223          45 GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG-LAGASFA  123 (417)
T ss_pred             CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh-cccceeh
Confidence            34778889999999999999999999999999999999999999888888877765444   4444444444 6778888


Q ss_pred             hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh---H-HHHHHHHHHHHHHHHHHH
Q psy10938        240 VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC---L-ILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       240 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~---~-~~~~~~~~~~~~~~~~~~  303 (314)
                      +...++++.+|+|++|.+.|++. .+|+|..+...+.+.+....+   + ....+.....++..+..+
T Consensus       124 v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~  190 (417)
T COG2223         124 VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW  190 (417)
T ss_pred             cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999998888766   2 234444555555444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.03  E-value=4.7e-09  Score=104.78  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY---YVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      ...++..+++.++..++.+++|+++||+|||+++..+..+..+..++..   ...+.+..++..++.+++.+...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            3456777888888999999999999999999999887766554444332   2345666677777788888888899999


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG  282 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~  282 (314)
                      ++.|.+|++.|+++.|+......+|.+++|.+++.+.+.
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.03  E-value=4.7e-09  Score=104.66  Aligned_cols=141  Identities=13%  Similarity=0.080  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH-HHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL--SSGVAMAL-YYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      ..++..+...+..++..+++|+++||+|||+++......  ........ ...++.+..++..++.+.+.+...|...++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            456667778888889999999999999999875332221  11122222 233677777888888898899999999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHhcccC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLA-AMLLIAGVFSMFLPAT  308 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  308 (314)
                      +.+.+|++.|++++|+.+....+|.+++|.++|.+.+..++..+++.. .+.+++.++..+++++
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999999987754443333 3333333344445544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.02  E-value=8.4e-09  Score=91.06  Aligned_cols=144  Identities=15%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh-----hhHH-HHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM-----GAKW-FLVAGLVLSSGVAMALYYVQT---STQNLILSCIFEAL  233 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  233 (314)
                      +.+..+.++...+...  .+..++.|.++||+     |||+ .+..+..+.+++...+.+.+.   .+......++.+++
T Consensus        30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~  107 (402)
T PRK11902         30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL  107 (402)
T ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            4467777777555544  57889999999999     7765 677777777777777666532   33334444455566


Q ss_pred             hhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        234 TGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH-C-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      .....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+.. + ...+++.+++.++..+.....||+
T Consensus       108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~  184 (402)
T PRK11902        108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEP  184 (402)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            66677788899999999999999999999988999999999999998853 5 556666666665555544455654

>KOG0254|consensus

Probab=99.00  E-value=9.2e-09  Score=93.67  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecc
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVD  247 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (314)
                      +.++..+...++..++.++.|+++|++|||+.+..+.+...++.++..+.++.....+.-++.|++.+....+...+.+|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45788899999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh--h-HHHHHHHHHHHHHHHHHHHhcccCC
Q psy10938        248 LFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH--C-LILICTLAAMLLIAGVFSMFLPATG  309 (314)
Q Consensus       248 ~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  309 (314)
                      ..|++.||...+..+....+|..++ ++.+...++.  + ...+.+..+.+++..+..+++||+.
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp  233 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP  233 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999877777 6666666543  3 4455555555555555555667654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.00  E-value=7.8e-09  Score=92.23  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=85.2

Q ss_pred             hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHHhhhhhchhheeeecccc
Q psy10938        178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQ--------NLILSCIFEALTGCCISVVYCIMVDLF  249 (314)
Q Consensus       178 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      +...++.++.|++.||+|||+.+..+..+..++.++..+.++.+.        .++.-++.+++.+...+....+..|.+
T Consensus        67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  146 (434)
T PRK15075         67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA  146 (434)
T ss_pred             HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence            334578899999999999999999999999998888888876542        344556677777777787788999999


Q ss_pred             cchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        250 PTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       250 p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      |+++|+++.++.+...++|..+++.+++.+.
T Consensus       147 p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075        147 TPGRKGFYTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888877653

>TIGR00889 2A0110 nucleoside transporter

Probab=99.00  E-value=3.4e-09  Score=93.94  Aligned_cols=148  Identities=11%  Similarity=-0.031  Sum_probs=98.0

Q ss_pred             hhcccccccccccc--------chhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh----HH
Q psy10938         49 FVLPSAQCDFGMTS--------SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ----YY  116 (314)
Q Consensus        49 ~~~~~~~~~~~~s~--------~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~  116 (314)
                      ...|.+.+++|.++        .+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            33455555665443        5679999999999999999999999999999999999999988876666532    34


Q ss_pred             HHHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHH-HHHHhhhhhHHhHHHHHHHHhh
Q psy10938        117 GVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHT-LIIGLACIPSSLAMPLLVHKMG  195 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g  195 (314)
                      +.+++.+++.|++.+   -..+.......+..+.+.            .....+... ....++..+|++++|++.|+.|
T Consensus       309 ~~l~l~~~l~g~~~~---~~~~~~~~~i~~~~p~~~------------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       309 ALLFLSMIVYGCAFD---FFNISGSVFVEKEVPVHI------------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            667788999998876   111111111122221111            223344443 4567888999999999999965


Q ss_pred             ------hHHHHHHHHHHHHHHH
Q psy10938        196 ------AKWFLVAGLVLSSGVA  211 (314)
Q Consensus       196 ------~~~~~~~~~~~~~~~~  211 (314)
                            .+.......++..++.
T Consensus       374 ~~~~~~~~~~f~~~~~~~~i~~  395 (418)
T TIGR00889       374 AYGTFDWQTMWLFFAGYIAILA  395 (418)
T ss_pred             cccCCchHHHHHHHHHHHHHHH
Confidence                  5655554444444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.99  E-value=9.4e-09  Score=93.14  Aligned_cols=134  Identities=9%  Similarity=-0.027  Sum_probs=95.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhchhhe
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTS-TQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +..++...............+++|++.|| +|||+.+..+..+..++..++.+..+. +.......+.+.+.+...+...
T Consensus        55 s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~  134 (500)
T PRK09584         55 SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPS  134 (500)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHH
Confidence            33444444444444444445689999999 599999999998888887777665433 3333444556667777778778


Q ss_pred             eeecccccchh--hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy10938        243 CIMVDLFPTNL--RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIA  298 (314)
Q Consensus       243 ~~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~  298 (314)
                      ++..|.+|++.  |..+.++.+...++|..++|.+.|++.|..+ ...|.+.++...++
T Consensus       135 ~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        135 SLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            89999997643  4567888899999999999999999999877 44566555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.98  E-value=1.2e-08  Score=89.49  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             hhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchh--------HHHHHHHHHHHhhhhhchhheeeecccc
Q psy10938        178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTST--------QNLILSCIFEALTGCCISVVYCIMVDLF  249 (314)
Q Consensus       178 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      +...++.++.|+++||+|||+.+..+..+..++.++..+.++..        ..+...++.+++.+...+....++.|.+
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  125 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA  125 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence            44457889999999999999999999999988888887776643        2344445566667777788888999999


Q ss_pred             cchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        250 PTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       250 p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      |+++|++..++.+....+|..++|.+.+.+.
T Consensus       126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.97  E-value=1.5e-08  Score=87.87  Aligned_cols=144  Identities=13%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh-----hhHHHH-HHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM-----GAKWFL-VAGLVLSSGVAMALYYVQT---STQNLILSCIFEAL  233 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  233 (314)
                      +.+..+.+..... .+...+ .++.|.++||+     |||+.+ ..+.+..+++...+.+.++   .+......++.+.+
T Consensus        19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~   96 (356)
T TIGR00901        19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF   96 (356)
T ss_pred             CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence            3455666666543 333333 78999999998     788864 5566666666556555532   22333334445555


Q ss_pred             hhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--------H-HHHHHHHHHHHHHHHHHHh
Q psy10938        234 TGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--------L-ILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--------~-~~~~~~~~~~~~~~~~~~~  304 (314)
                      .....+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+..+        + ..+++.++..+++.+...+
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901        97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            566667778899999999999999999999999999999999998887755        3 3455666655555444443


Q ss_pred             -cccC
Q psy10938        305 -LPAT  308 (314)
Q Consensus       305 -~~~~  308 (314)
                       .+|.
T Consensus       177 ~~~e~  181 (356)
T TIGR00901       177 LAKEP  181 (356)
T ss_pred             hccCC
Confidence             3554

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=4.5e-08  Score=87.32  Aligned_cols=121  Identities=19%  Similarity=0.120  Sum_probs=102.8

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHhhhh
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQTSTQNLILSCIFEALTGC  236 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  236 (314)
                      +..+.+..+.++....+.++..++.+..|.+.||+|||+++..+..+..++.++.   .+.++.+..+...++.+.+.+.
T Consensus        54 ~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~  133 (438)
T PRK10133         54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC  133 (438)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4556678889999999999999999999999999999999999999988888764   3455666677777888888888


Q ss_pred             hchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        237 CISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       237 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      ..+..+.++.|..|++.|....++.+....+|..++|.+++.+.
T Consensus       134 ~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877777777899999999999999999987654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.95  E-value=1.9e-08  Score=88.58  Aligned_cols=142  Identities=13%  Similarity=-0.034  Sum_probs=101.1

Q ss_pred             cccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCCCC
Q psy10938         58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGH  137 (314)
Q Consensus        58 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~~~  137 (314)
                      .+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...++|.+.+++.+++.|++..      
T Consensus       249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~------  322 (396)
T TIGR00882       249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVP------  322 (396)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH------
Confidence            35566678999999999999999999999999999999999999989888887888999999999999998764      


Q ss_pred             cccchhhhhhhcCCcCCCcCcccccCCCCh-hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy10938        138 PGKVASVCDVSALQPADNSTVATCSGEVNP-EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL  214 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~  214 (314)
                       .......+..+....++        .... ..........++..++.++.|++.|.+|.+..+....++..+..+.-
T Consensus       323 -~~~~~~~~~~~~~~~~~--------~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       323 -FLLVGCFKYITSQFDVR--------LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             -HHHHHHHHHHHHhCCcc--------eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence             11111111111100000        0111 11223467788999999999999999998777766665555544443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.95  E-value=2e-09  Score=99.81  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=112.6

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--------------------------
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ--------------------------  218 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------------------------  218 (314)
                      +..+.+.+.+.+.++..++.++.+++.||.+||+.+.++.++.+++.++..+.+                          
T Consensus        66 ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c  145 (633)
T TIGR00805        66 STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLC  145 (633)
T ss_pred             CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccc
Confidence            455677778888889999999999999999999999999999888888775542                          


Q ss_pred             -------------------------chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHH
Q psy10938        219 -------------------------TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGN  273 (314)
Q Consensus       219 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p  273 (314)
                                               ....+++.-++.|++.+..++...+++.|.+|++.|+...|+.+....+|..+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~  225 (633)
T TIGR00805       146 MENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGY  225 (633)
T ss_pred             cCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHH
Confidence                                     0122345667788888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh---------------------h--HHHHHHHHHHHHHHHHHHHhccc
Q psy10938        274 LMFGFLIDGH---------------------C--LILICTLAAMLLIAGVFSMFLPA  307 (314)
Q Consensus       274 ~~~g~l~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~~~  307 (314)
                      .++|.+.+.+                     |  +..|++.+++.++.++..+++|+
T Consensus       226 llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       226 LLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999988642                     1  33466666666665555555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.93  E-value=2.9e-09  Score=70.18  Aligned_cols=81  Identities=25%  Similarity=0.356  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHH
Q psy10938         40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF  119 (314)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  119 (314)
                      .+..++.+.|++|.+++|.++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+..+.+++.++++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             H
Q psy10938        120 L  120 (314)
Q Consensus       120 ~  120 (314)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            4

Note that many members are hypothetical proteins.

>KOG2816|consensus

Probab=98.91  E-value=2.4e-07  Score=82.18  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=98.8

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMP-LLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      +....+.+.+.+..+....++.++.. .+...++.|+.+..+.....+......+..+.|..+..... ........+..
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~-~~~~~~~~pa~  351 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV-VALAGIVFPAI  351 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH-HHhhcchhHHH
Confidence            45566677677777777778777776 78888899998889999999999999998888776655444 44677778888


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .+..+...+++++|++.++...+..+...++|.+.+.+...+
T Consensus       352 ~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  352 RAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            899999999999999999999999999999999999887653

>PTZ00207 hypothetical protein; Provisional

Probab=98.86  E-value=8.4e-08  Score=87.36  Aligned_cols=120  Identities=13%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhH
Q psy10938        182 PSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV------QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRV  255 (314)
Q Consensus       182 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  255 (314)
                      ...+..|++.||+|+|+++.++.++..++.++..+.      ++.+...+..++.+.+.+...+.....+.+.+| ++||
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG  154 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG  154 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence            355678999999999999999999999998888776      455666666667777777677777777888886 7899


Q ss_pred             HHHHHHHhhhhhhhhh-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy10938        256 LAAALSSTFGRFGGLT-GNLMFGFLIDGHCLILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       256 ~~~g~~~~~~~~g~~~-~p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  303 (314)
                      ++.|+......+|+++ +++..+.+.+. ....+++.+++.++..++..
T Consensus       155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~~-~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        155 AVVAIMKTFTGLGSAILGSIQLAFFSDN-TSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999975 55555444433 23445555555544444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.84  E-value=9.4e-08  Score=86.54  Aligned_cols=127  Identities=17%  Similarity=0.112  Sum_probs=96.2

Q ss_pred             hHHhHHHHHHHHh-----hhHHH-HHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhhhhhchhheeeecccccch
Q psy10938        182 PSSLAMPLLVHKM-----GAKWF-LVAGLVLSSGVAMALYYVQ---TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTN  252 (314)
Q Consensus       182 ~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  252 (314)
                      .+.++.+.++||+     |||+. +..+.+..+++...+.+.+   +.+......++.+++.....+...++..|.+|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5789999999999     88875 5566666666666665543   3334444555666677777777889999999999


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHhcccC
Q psy10938        253 LRVLAAALSSTFGRFGGLTGNLMFGFLIDG-HC-LILICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       253 ~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      +|+++.++......+|..+++.+.+.+.+. .+ ...|++.+++.++..+..++.||+
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~  197 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEP  197 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999984 45 566777777666665555556665

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.81  E-value=1.8e-06  Score=73.97  Aligned_cols=124  Identities=15%  Similarity=0.034  Sum_probs=102.5

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhh
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVH-KMGAKWFLVAGLVLSSGVAMALYYV---QTSTQNLILSCIFEALTG  235 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  235 (314)
                      +..+.+..+..........+..+|....+++.. |.++++...+++..+.+++.++...   .+.+......+++|++.+
T Consensus       237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence            566788888899999999999999999998777 5677777778888887777665443   456677777788888888


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .......+...++.+++..|..+|.-...+.+...++..++|.+.|..
T Consensus       317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777788888888888999999999999999999999999998853

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0569|consensus

Probab=98.81  E-value=1.2e-07  Score=83.87  Aligned_cols=141  Identities=19%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhchhheeeec
Q psy10938        170 FSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV---QTSTQNLILSCIFEALTGCCISVVYCIMV  246 (314)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (314)
                      ....+.+.+++++|.+..+.++||+|||..+....++..++.++..+.   +.....+..-++.|...+........++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            355677889999999999999999999998888887777766665543   45556667777888888888888999999


Q ss_pred             ccccchhhHHHHHHHHhhhhhhhhhHHHHH-HHHHhhhh--HHHHHHHHHHHHHHHHHHHhcccCCC
Q psy10938        247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMF-GFLIDGHC--LILICTLAAMLLIAGVFSMFLPATGK  310 (314)
Q Consensus       247 ~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~-g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (314)
                      |..|++.||....+......+|..++..++ ..+.....  ...+....+..++..+...++||+.+
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999988888888888885554 22222211  22233334445555556667788653

>TIGR01272 gluP glucose/galactose transporter

Probab=98.77  E-value=2.3e-07  Score=78.81  Aligned_cols=127  Identities=10%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             ccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCCC
Q psy10938         57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPG  136 (314)
Q Consensus        57 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~~  136 (314)
                      .+|+++.+.++..+.+..+..+|.+..+++.||+|+|+.+..+..+..++.++....++...+ ..-++.|++.+|+   
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i---  247 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIM---  247 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHH---
Confidence            369999999999999999999999999999999999999888888887777666555443322 3455777777621   


Q ss_pred             CcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHH
Q psy10938        137 HPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLV  201 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  201 (314)
                      .|..-....+...++             .....+. .....+++.+.+.+.|.+.|+.|.+..+.
T Consensus       248 ~P~~~s~a~~~~~~~-------------~~~asai-~~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       248 FPTIFSLALNALGRH-------------TSQGSGI-LCLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHhhhhhh-------------hhhhHHH-HHHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            001000000101100             1112222 34566788889999999999999766544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.75  E-value=1.9e-07  Score=83.24  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=99.7

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHH----HhhhHHHHHHH-HHHHHHHHHHHHHhcchh-----------------H
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVH----KMGAKWFLVAG-LVLSSGVAMALYYVQTST-----------------Q  222 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~  222 (314)
                      +....+.......+...+..++.|+++|    |+|||+.+... .....+++.++.+.++..                 .
T Consensus        37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~  116 (477)
T TIGR01301        37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV  116 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence            3456677778888889999999999999    59999988765 555555656665544321                 1


Q ss_pred             HHHHHHHHHHhhhhhchhheeeecccccchhh--HHHHHHHHhhhhhhhhhHHHHHHHHH--hhh-------------h-
Q psy10938        223 NLILSCIFEALTGCCISVVYCIMVDLFPTNLR--VLAAALSSTFGRFGGLTGNLMFGFLI--DGH-------------C-  284 (314)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~~~p~~~g~l~--~~~-------------~-  284 (314)
                      ......+..+......+...++++|..|+++|  +.+.++.+...++|+.+++.+++...  +..             + 
T Consensus       117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~  196 (477)
T TIGR01301       117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL  196 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence            12222334456666777788999999998765  57999999999999999999988652  211             1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-ccC
Q psy10938        285 LILICTLAAMLLIAGVFSMFL-PAT  308 (314)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~-~~~  308 (314)
                      ...|++.+++.+++.+...+. +|.
T Consensus       197 ~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       197 KSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHeeeeecc
Confidence            335666666666666655443 664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.74  E-value=1.7e-07  Score=82.38  Aligned_cols=146  Identities=14%  Similarity=0.016  Sum_probs=90.2

Q ss_pred             hccccccccccccchhhHHhHhhH-HHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh------hhHHHHHHHH
Q psy10938         50 VLPSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV------AQYYGVFLAL  122 (314)
Q Consensus        50 ~~~~~~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~  122 (314)
                      ..+.+.+|.|.+++++|++..... ....++.++.|++.||+|+|+.+..+..+..+..+....      .++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            345556678999999999988876 466778999999999999999988877665333332221      1233333344


Q ss_pred             HHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHH
Q psy10938        123 RFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVA  202 (314)
Q Consensus       123 r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  202 (314)
                      ..+.+++.+   -....-.....+...+++           ......+...+...++..+++.++|.+.|+.|.+..+..
T Consensus       310 ~~~~~~~~g---~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~  375 (390)
T TIGR02718       310 SAFGSLITG---ITSVAIYTAFMRFAGDGD-----------QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLS  375 (390)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHhCccc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            444443333   000000001111111101           134556677778899999999999999999998766665


Q ss_pred             HHHHHHH
Q psy10938        203 GLVLSSG  209 (314)
Q Consensus       203 ~~~~~~~  209 (314)
                      ...+..+
T Consensus       376 ~~~~~l~  382 (390)
T TIGR02718       376 GTVLAVL  382 (390)
T ss_pred             HHHHHHH
Confidence            5544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.71  E-value=1e-07  Score=83.15  Aligned_cols=144  Identities=15%  Similarity=0.083  Sum_probs=115.1

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhch
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQ--TSTQNLILSCIFEALTGCCIS  239 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  239 (314)
                      +.+..++......+....-+.++++||++||+ |+|+++..+.++..++.+++....  .....++...+...+.+..-+
T Consensus        57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~  136 (498)
T COG3104          57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKP  136 (498)
T ss_pred             CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccc
Confidence            35666666667777777777889999999996 999999999999999999988774  455566666666678888889


Q ss_pred             hheeeecccccch--hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcc
Q psy10938        240 VVYCIMVDLFPTN--LRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLP  306 (314)
Q Consensus       240 ~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  306 (314)
                      ...+.+.|.+|++  .|..+.++.....++|+.++|++.+++.+..+ ...|...++-+..+.+..+..+
T Consensus       137 NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         137 NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999763  36788899999999999999999999999988 4556666666666666555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.66  E-value=4.3e-09  Score=95.40  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  112 (314)
                      ++..+............++.++++|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++.+++++
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            3344444555555667789999999999999999999999999999999999999988888999999999999888753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.9e-06  Score=73.37  Aligned_cols=117  Identities=21%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhchhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV---QTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      +..+++.....+..+..+..+..+++.+|+|+|.-+..+..++++++.++.-.   .+....+...++.+.+.+......
T Consensus        46 s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Letaa  125 (422)
T COG0738          46 TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA  125 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhcc
Confidence            67788899999999999999999999999999999999999999999988533   334445566677788888888999


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      +.++..+.|++..+.-+.+.+.++.+|.+++|++++.+..
T Consensus       126 Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9999999999888889999999999999999999999987

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.64  E-value=1.2e-06  Score=78.55  Aligned_cols=158  Identities=16%  Similarity=0.107  Sum_probs=113.1

Q ss_pred             HHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchh--HHHHHHHHHHHHHhHHHHh--------hhH
Q psy10938         46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGALLVDGLCGIASSV--------AQY  115 (314)
Q Consensus        46 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~  115 (314)
                      ..........+++|++..+...+.-...+...+|++++|++.||+|.|  +++..++.++.+-.+...+        .++
T Consensus       300 i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~  379 (477)
T PF11700_consen  300 IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS  379 (477)
T ss_pred             HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc
Confidence            334445555678999999999999999999999999999999999999  8888888888665555555        677


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh
Q psy10938        116 YGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG  195 (314)
Q Consensus       116 ~~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  195 (314)
                      .+.+.+.-++.|+..||   .....+.-..++....+            ..+.-+++....-....+|+++.|.+.|..|
T Consensus       380 ~~~f~~~a~~~G~~~G~---~qs~sRs~~~~LiP~g~------------e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGG---IQSASRSLFSRLIPPGR------------EAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHHHHHHHHHHhhh---HHHHHHHHHHHhCCCch------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888899999999982   11112222223322221            3445556666666788999999999999998


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHhc
Q psy10938        196 -AKWFLVAGLVLSSGVAMALYYVQ  218 (314)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~  218 (314)
                       .|.-+..-.++..++++++...+
T Consensus       445 ~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  445 SQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhcc
Confidence             55555555555556666655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2533|consensus

Probab=98.62  E-value=3.1e-07  Score=82.12  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=119.4

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      ....+-+...+++.++.+++.+.++.+.||++..+.+....+...+..++....++.+..+++-++.|++.+..+|....
T Consensus        78 ~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~  157 (495)
T KOG2533|consen   78 LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVA  157 (495)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHH
Confidence            34566777888999999999999999999999777766666666666655566788888999999999999999999999


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh------hh-HHHHHHHHHHHHHHHHHHH-hcccC
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG------HC-LILICTLAAMLLIAGVFSM-FLPAT  308 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~------~~-~~~~~~~~~~~~~~~~~~~-~~~~~  308 (314)
                      ++...+.+++|++-+|+.++...+|+++|+++...+.+.      .| ...|++-+++.++.+++.+ ++|+.
T Consensus       158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence            999999999999999999999999999999999876542      23 4567888888777776654 44654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.60  E-value=6.5e-07  Score=81.33  Aligned_cols=131  Identities=15%  Similarity=0.064  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccc
Q psy10938        169 VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDL  248 (314)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      ..++.....+...+...+.|.++|.+|||+.+..+.++..++.++....++....+....+.+++.+... .....++|+
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl  158 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISEL  158 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHh
Confidence            3445566777888888999999999999999999999999999999999888888888888887654443 445568999


Q ss_pred             ccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy10938        249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGV  300 (314)
Q Consensus       249 ~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~  300 (314)
                      .|.+.|..+.++.....-.....+|.+...+..+.+ +..+++..+...++.+
T Consensus       159 ~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  159 VPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             cccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            999999888877776555555677777766654433 4455555555444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.57  E-value=1.8e-07  Score=61.23  Aligned_cols=70  Identities=24%  Similarity=0.340  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      ...+++.........|..|.+.++.|+|+.|+|.+.++..+...++++++|.++||+++++..+....+.
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3455666666677788888899999999999999999999999999999999999999998877665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.56  E-value=5.2e-10  Score=100.22  Aligned_cols=142  Identities=18%  Similarity=0.087  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhhhhhchhhee
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ---TSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      .......+...++..+|.++.|++.||+|||+.+..+..+..++.++..+.+   +.+.....-++.|++.+...+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566778888899999999999999999999999999999999999998888   7777778888899999999999999


Q ss_pred             eecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh---HH-HHHHHHHHHHHHHHHHHhcccC
Q psy10938        244 IMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC---LI-LICTLAAMLLIAGVFSMFLPAT  308 (314)
Q Consensus       244 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~  308 (314)
                      ++.|..|++.|+....+.+....+|..++..+.-...+..+   +. .+...++..++..+...++||+
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES  194 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999988888887776533322221   22 2333333443434444556765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.55  E-value=2.6e-06  Score=74.07  Aligned_cols=155  Identities=13%  Similarity=0.077  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHH
Q psy10938         37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (314)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (314)
                      .+.+.+|.+ +......+-++-+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+..+=..+++++++.
T Consensus       234 ~~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  234 AIYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP  312 (412)
T ss_dssp             HHHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH
T ss_pred             HHHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch
Confidence            445555554 3333444444445566778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHH--HHHHHHhhhhhHHhHHHHHHHHh
Q psy10938        117 GVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFS--HTLIIGLACIPSSLAMPLLVHKM  194 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~  194 (314)
                      +.+.+.+.+.|+-.+ +  -.-..-+-..+.++.+             .......  .....+++..+.+.++|.+-|++
T Consensus       313 ~~i~~~klLH~~e~~-l--~lva~fkYI~~~fd~r-------------lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~  376 (412)
T PF01306_consen  313 WVISLIKLLHALEFP-L--LLVAAFKYITAHFDKR-------------LSATLYLVGFQFAKQIGIIILSPLAGYLYDRI  376 (412)
T ss_dssp             HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHS-GG-------------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-H--HHHHHHHHHHHhCCHh-------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence            999999999987663 0  0000001111111111             1111222  23455678888899999999999


Q ss_pred             hhHHHHHHHHHHHH
Q psy10938        195 GAKWFLVAGLVLSS  208 (314)
Q Consensus       195 g~~~~~~~~~~~~~  208 (314)
                      |-+.+..+...+..
T Consensus       377 G~~~tylimg~iv~  390 (412)
T PF01306_consen  377 GFQHTYLIMGLIVL  390 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            98766544333333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.55  E-value=1.2e-06  Score=78.17  Aligned_cols=146  Identities=13%  Similarity=0.078  Sum_probs=96.7

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHH----hhhHH-HHHHHHHHHHHHHHHHHHhcchh------HHHHHHHHHH
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHK----MGAKW-FLVAGLVLSSGVAMALYYVQTST------QNLILSCIFE  231 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  231 (314)
                      +.++...+...++..+...+..++.|+++||    +|||+ .+..+....+++.+++.+.++..      ......++.+
T Consensus        31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (437)
T TIGR00792        31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG  110 (437)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            4467788888999999999999999999998    56644 45566667776666666554321      1222233344


Q ss_pred             Hhhhhhchhheeeecccc-cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh-------hh-HHHHHHHHHHHHHHHHHH
Q psy10938        232 ALTGCCISVVYCIMVDLF-PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG-------HC-LILICTLAAMLLIAGVFS  302 (314)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~-------~~-~~~~~~~~~~~~~~~~~~  302 (314)
                      .+.........++..|.. ++++|++..+..+....+|..+++.+.+.+...       .+ ...+.+.+++.++..+..
T Consensus       111 ~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       111 LFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             HHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            444544555667788876 468899999999998889888887777666542       23 234555555555554444


Q ss_pred             H-hcccC
Q psy10938        303 M-FLPAT  308 (314)
Q Consensus       303 ~-~~~~~  308 (314)
                      . ..+|+
T Consensus       191 ~~~~~e~  197 (437)
T TIGR00792       191 FFGTKER  197 (437)
T ss_pred             HcCCEec
Confidence            3 34554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2504|consensus

Probab=98.49  E-value=2.9e-06  Score=76.58  Aligned_cols=142  Identities=13%  Similarity=0.091  Sum_probs=117.2

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHhhhhhchhh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLIL-SCIFEALTGCCISVV  241 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  241 (314)
                      +.+..+..+..++......+..++.+.+.||+|.|.+.+.+.++..+++++..+..+.+..++. .++.|++.+..+...
T Consensus        77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pa  156 (509)
T KOG2504|consen   77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPA  156 (509)
T ss_pred             CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcch
Confidence            3345557888888888888889999999999999999999999999999999999987765544 455677777777777


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ...+...+ +++|+.+.|+......+|..+-|.+.-++.+..| ...+++.+.+.+-.......+
T Consensus       157 iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  157 VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL  220 (509)
T ss_pred             hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            77888766 5889999999999999999999999999999988 677777777776655555544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.49  E-value=1.9e-06  Score=76.85  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh-
Q psy10938         36 LYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-  114 (314)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-  114 (314)
                      ..++............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+..+..++.++..+.+ 
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            3334444444444455555555333336778888899999999999999999999999999999999999999988886 


Q ss_pred             -HHHHHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHH
Q psy10938        115 -YYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHK  193 (314)
Q Consensus       115 -~~~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  193 (314)
                       |.+.+++.-++.|++.+.   ...-......|..+..+.+..     .+..+...+......-++..++..+.+.+.+.
T Consensus       313 ~~~~~~~i~~~l~gi~~~~---~~~~~~a~~ad~id~~e~~tg-----~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGA---FFVIPWAMLADVIDYDEWKTG-----RRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcc---cccccccccccchhhHHHhcC-----CCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence             999999999999999982   110011111111111100000     00023344455555567777777777877777


Q ss_pred             hh
Q psy10938        194 MG  195 (314)
Q Consensus       194 ~g  195 (314)
                      .|
T Consensus       385 ~G  386 (428)
T PF13347_consen  385 VG  386 (428)
T ss_pred             hC
Confidence            65

>KOG0252|consensus

Probab=98.47  E-value=7.3e-07  Score=76.91  Aligned_cols=112  Identities=14%  Similarity=0.015  Sum_probs=88.2

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc---c----hhHHHHHHHHHHHhhhhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ---T----STQNLILSCIFEALTGCC  237 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~  237 (314)
                      .+...+.......++.++|+++.|++.||+|||+++-...+++.++.++.....   +    .+.+...-++.|++.++-
T Consensus        82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD  161 (538)
T KOG0252|consen   82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD  161 (538)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence            455666778888899999999999999999999999998888888887554432   1    123445556788899999


Q ss_pred             chhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHH
Q psy10938        238 ISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMF  276 (314)
Q Consensus       238 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~  276 (314)
                      +|...+..+|....+.||.-.+....+...|...|..+.
T Consensus       162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt  200 (538)
T KOG0252|consen  162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA  200 (538)
T ss_pred             CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence            999999999999999999988887777766655554444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.41  E-value=2.9e-05  Score=63.16  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q psy10938         27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (314)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  106 (314)
                      |..+......+...+ ..+.++...|++++.+|+|..|...+.+...+|..+| ++.|.+.|++|+|.++.+|.+...+|
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            444444444443333 4456777889999999999999999999999999875 88999999999999999999999999


Q ss_pred             hHHHHhh-------hHHHHHHHHHHHhhcccC
Q psy10938        107 GIASSVA-------QYYGVFLALRFINGFASR  131 (314)
Q Consensus       107 ~~~~~~~-------~~~~~l~~~r~l~G~~~~  131 (314)
                      ......+       +++|.+.+..++.|.+.+
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~  111 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC  111 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence            8887653       467777777777777654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.36  E-value=7.3e-06  Score=72.01  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhhccccccccc-cccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh-hH
Q psy10938         38 AYAAISITVLSFVLPSAQCDFG-MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QY  115 (314)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~  115 (314)
                      ++.+.....+....+.+.+|.| .+....+.+.+...++-...-...+++..|+|.|+++.++.+...+=..+.+.. ++
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~  296 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4444445555555666677777 677788888888888899999999999999999999999999999988888877 55


Q ss_pred             HHHHHH----HHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHH
Q psy10938        116 YGVFLA----LRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLV  191 (314)
Q Consensus       116 ~~~l~~----~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  191 (314)
                      .+....    ...++|+..+   --......-.++..+ ++.+          ...+.-......+++..+|.+++|++.
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~---~~~~a~~~yi~~~~p-~~~~----------at~Q~l~~~~~~Glg~~iG~~igG~l~  362 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFG---LFHAASVRYIDRIAP-PELR----------ATAQGLYSALSFGLGGAIGSLIGGWLY  362 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHhCC-ccch----------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444333    3456887665   000000111111111 1100          223444455567899999999999999


Q ss_pred             HHhhhHHHH
Q psy10938        192 HKMGAKWFL  200 (314)
Q Consensus       192 d~~g~~~~~  200 (314)
                      |++|.+...
T Consensus       363 ~~~g~~~~~  371 (400)
T PF03825_consen  363 DAFGARGMF  371 (400)
T ss_pred             HHhcchhhh
Confidence            999977644

>TIGR00788 fbt folate/biopterin transporter

Probab=98.35  E-value=4e-06  Score=75.47  Aligned_cols=143  Identities=16%  Similarity=0.097  Sum_probs=92.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhh-----hHHHHHHHHHHHH-HHHHHHHHhcchhHHHH-HHHHHHHhhhhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMG-----AKWFLVAGLVLSS-GVAMALYYVQTSTQNLI-LSCIFEALTGCC  237 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (314)
                      +..+.+.......+...+-.+ .|.++||++     ||+.+..+.++.. +....+...++...... ..++..++....
T Consensus        59 s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~  137 (468)
T TIGR00788        59 DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALY  137 (468)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence            556666666777777777555 999999997     6777777766653 33333333233222232 445566666666


Q ss_pred             chhheeeecccccchhhHHH---HHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcccCC
Q psy10938        238 ISVVYCIMVDLFPTNLRVLA---AALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFLPATG  309 (314)
Q Consensus       238 ~~~~~~~~~~~~p~~~r~~~---~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  309 (314)
                      .....++..|..+ +.+...   .+.......+|..+++.+.|.+.+..+ ...+++.+.+.++..+...+++|++
T Consensus       138 dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       138 DVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            6777888999887 444333   333333445899999999999999876 5566666666666644556667754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816|consensus

Probab=98.35  E-value=6.8e-06  Score=73.06  Aligned_cols=133  Identities=20%  Similarity=0.166  Sum_probs=102.8

Q ss_pred             HHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhh
Q psy10938        175 IIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR  254 (314)
Q Consensus       175 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  254 (314)
                      ..++..++.....|.++||+|||..+......+.+..+...+..  ++.++ ..-...+....+...++++++....+.|
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHH
Confidence            34566777888999999999999999988888887777776654  33222 1122335667778889999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-hcccCCC
Q psy10938        255 VLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM-FLPATGK  310 (314)
Q Consensus       255 ~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  310 (314)
                      ....|+.+.....+..++|...+.+.+..+ ...+.+..+..++..+... ++||+..
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            999999999999999999999999999977 5667777766666666544 4577644

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.32  E-value=2.8e-05  Score=65.45  Aligned_cols=140  Identities=16%  Similarity=-0.014  Sum_probs=117.8

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhe
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +.+...+++..++..+......++..++.+|+|.++.+..+.++.++..++=... +.+..+....+.+.+.+..+...+
T Consensus        43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLP  121 (395)
T COG2807          43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLP  121 (395)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhh
Confidence            4578889999999999999999999999999999999999998888888776655 566667777788888999999999


Q ss_pred             eeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHh
Q psy10938        243 CIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH-C-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~-~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      +.+.+.+|++ -+..+|++.....+++++++.+.-.+.++. + .......+...+++.++++-
T Consensus       122 slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         122 SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999865 489999999999999999999999999887 3 45566667777777665553

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.27  E-value=2.3e-05  Score=69.78  Aligned_cols=145  Identities=14%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hh---------cchhHHHHHHHHHHHh
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY-YV---------QTSTQNLILSCIFEAL  233 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~  233 (314)
                      .+....+....+..++.++|..+......+...|+++....++..+..+.-. +.         ++.+-.+.-..+....
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            3444445555555666666766666666667778877766665554433211 11         1111112222334444


Q ss_pred             hhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHh
Q psy10938        234 TGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC---------LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~---------~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ....+-......+|+.|+...|+.+++..++.++|..++..++..+.+..+         +...++..++.++...+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            444455566788999999999999999999999999999999988887654         12233344444444444545


Q ss_pred             cccC
Q psy10938        305 LPAT  308 (314)
Q Consensus       305 ~~~~  308 (314)
                      +|+.
T Consensus       412 Lp~~  415 (433)
T PF03092_consen  412 LPPQ  415 (433)
T ss_pred             cCCC
Confidence            6553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=98.27  E-value=4.5e-05  Score=68.45  Aligned_cols=141  Identities=9%  Similarity=-0.135  Sum_probs=87.5

Q ss_pred             hhccccc-cccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh--HHHHHHHHHHH
Q psy10938         49 FVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFLALRFI  125 (314)
Q Consensus        49 ~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l  125 (314)
                      ...|.+. +.+|.++...++......++..+++++++++.||+|+|+++..+..+..++.+...+.+  +++.+.+..++
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l  328 (448)
T PRK09848        249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI  328 (448)
T ss_pred             hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            3455443 44676665555555555677888999999999999999999999988888877776643  66777777788


Q ss_pred             hhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH
Q psy10938        126 NGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK  197 (314)
Q Consensus       126 ~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  197 (314)
                      .|+|.+   -..+.......|..+..+.+.     ..+..+...+.......++..++..+.+.+.+..|..
T Consensus       329 ~g~G~~---~~~~~~~al~~~~~~~~~~~~-----g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        329 ASIGQG---VTMTVMWALEADTVEYGEYLT-----GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HHHHHH---HHHHHHHHHHHHhhhhhHHhh-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888876   100000111111111100000     0001234445566666688888888888888877643

>KOG3626|consensus

Probab=98.25  E-value=2.3e-05  Score=72.32  Aligned_cols=85  Identities=14%  Similarity=0.191  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh
Q psy10938         28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  107 (314)
                      ..+.++++..+..++....+...+..+.+.|+++..+.|++.+.+-++..+...+..+...|..|-+.+-.+.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34555566667777766777788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy10938        108 IASSV  112 (314)
Q Consensus       108 ~~~~~  112 (314)
                      +++++
T Consensus       177 ll~al  181 (735)
T KOG3626|consen  177 LLFAL  181 (735)
T ss_pred             HHHhC
Confidence            98875

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.17  E-value=3.7e-05  Score=69.52  Aligned_cols=147  Identities=7%  Similarity=-0.075  Sum_probs=89.5

Q ss_pred             HHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHh-----hhHHH
Q psy10938         43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-----AQYYG  117 (314)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~  117 (314)
                      .........+.+.+....+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+....     .++.+
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL  325 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence            3334444555565554445566777777777899999999999999999999998888776665554432     34566


Q ss_pred             HHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH
Q psy10938        118 VFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK  197 (314)
Q Consensus       118 ~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  197 (314)
                      .+++.-++.|++.+.   ..........|..+..+.+.     .....+...+......-++..++..+.|++.|..|..
T Consensus       326 ~~~i~~~l~g~~~~~---~~~~~~am~ad~id~~e~~t-----G~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        326 LIVIAGILLNIGTAL---FWVLQVIMVADTVDYGEYKL-----GIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhHhc-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            666677777777660   00000111122211111000     0001233445555666678888899999999988743

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.17  E-value=1.4e-05  Score=68.58  Aligned_cols=132  Identities=13%  Similarity=0.082  Sum_probs=96.8

Q ss_pred             cccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC
Q psy10938         52 PSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR  131 (314)
Q Consensus        52 ~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  131 (314)
                      ..-..++|++..+..++.-...+..++|++++|++.||+|.|+++..++++..+..+...+......+.+.-.+.|...|
T Consensus       277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G  356 (438)
T COG2270         277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG  356 (438)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence            33455999999999999999999999999999999999999999999999999888877777666666777788888888


Q ss_pred             CCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHH
Q psy10938        132 PLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKW  198 (314)
Q Consensus       132 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~  198 (314)
                      |..   ...+.-..+.....+            .+..-+++....-....+|++..+.+.|..|.-+
T Consensus       357 ~~q---A~SRSy~~~lvp~~k------------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r  408 (438)
T COG2270         357 GAQ---ASSRSYLARLVPKGK------------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSR  408 (438)
T ss_pred             hHH---HHHHHHHHHhCCCcc------------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh
Confidence            311   111111122222111            2334455555555778889999999999887543

>PRK09669 putative symporter YagG; Provisional

Probab=98.17  E-value=1.9e-05  Score=70.78  Aligned_cols=120  Identities=13%  Similarity=0.047  Sum_probs=80.8

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHH----hhhHH-HHHHHHHHHHHHHHHHHHhcch------hHHHHHHHHHH
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHK----MGAKW-FLVAGLVLSSGVAMALYYVQTS------TQNLILSCIFE  231 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  231 (314)
                      +.+....+....+.-+...+..++.|+++||    +|||+ .+..+.+..+++..+....++.      ....+...+..
T Consensus        41 gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~  120 (444)
T PRK09669         41 GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLS  120 (444)
T ss_pred             CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            3466778888888888899999999999998    56644 4445666666666555555431      12222223334


Q ss_pred             Hhhhhhchhheeeecccc-cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy10938        232 ALTGCCISVVYCIMVDLF-PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG  282 (314)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~  282 (314)
                      .+.........++.+|.. ++++|.+..+.......+|+.+++.+...+...
T Consensus       121 ~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~  172 (444)
T PRK09669        121 LVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI  172 (444)
T ss_pred             HHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555567888887 457899988999888888888887766555543

>KOG0253|consensus

Probab=98.10  E-value=1.9e-05  Score=66.68  Aligned_cols=143  Identities=13%  Similarity=0.139  Sum_probs=113.7

Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      ..+..++......+..++....|.+.|++|||+.........++.-.+-...++......+-.+.+++.++ .|...++-
T Consensus       112 ~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y  190 (528)
T KOG0253|consen  112 EGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY  190 (528)
T ss_pred             hhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence            34455666677788899999999999999999999999999999888888888888888888888888888 88888999


Q ss_pred             cccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHhcccCCC
Q psy10938        246 VDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILIC-TLAAMLLIAGVFSMFLPATGK  310 (314)
Q Consensus       246 ~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  310 (314)
                      .|..|...|..-.=.. ....+|.+....+.=....+.|+..++ ..+....+.+.++.+++|..+
T Consensus       191 le~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  191 LEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             HHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            9999998888766555 777799998888886667777754443 344556666667777787643

>PRK11462 putative transporter; Provisional

Probab=98.07  E-value=0.0001  Score=66.36  Aligned_cols=121  Identities=14%  Similarity=0.029  Sum_probs=83.1

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHH----hhhHHHH-HHHHHHHHHHHHHHHHhcc--hh----HHHHHHHHHH
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHK----MGAKWFL-VAGLVLSSGVAMALYYVQT--ST----QNLILSCIFE  231 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~-~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~  231 (314)
                      +.++..++.+..+.-+...+.-++.|.++||    +|||+.. .++.+..+++.+++...++  ..    ...+...++.
T Consensus        41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~  120 (460)
T PRK11462         41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT  120 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            3355667777777778888888999999997    5766554 4566677777766655542  11    1222223344


Q ss_pred             Hhhhhhchhheeeeccccc-chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        232 ALTGCCISVVYCIMVDLFP-TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      .+.........++.+|+.+ +++|++..+.....+.+|..+++.+...+.+..
T Consensus       121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~  173 (460)
T PRK11462        121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555556778888876 589999999999999999888888876666543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.06  E-value=0.00019  Score=62.29  Aligned_cols=221  Identities=11%  Similarity=-0.023  Sum_probs=146.1

Q ss_pred             hhccccccc-cccccchhh-HHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHh
Q psy10938         49 FVLPSAQCD-FGMTSSDKG-WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (314)
Q Consensus        49 ~~~~~~~~~-~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  126 (314)
                      .+.|.+.+. .|++..|+. -+.....-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..+..
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY  104 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            344555554 788888764 567777788888999999999999999999999999999999999999999999999999


Q ss_pred             hcccC-------------C---------------------------------------------------------CC--
Q psy10938        127 GFASR-------------P---------------------------------------------------------LI--  134 (314)
Q Consensus       127 G~~~~-------------P---------------------------------------------------------l~--  134 (314)
                      |++.+             |                                                         |+  
T Consensus       105 g~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  105 GLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99988             1                                                         11  


Q ss_pred             -------CCCccc-------chhhhhhhcCC---cCCCc--Ccc------------------------------------
Q psy10938        135 -------PGHPGK-------VASVCDVSALQ---PADNS--TVA------------------------------------  159 (314)
Q Consensus       135 -------~~~~~~-------~~~~~~~~~~~---~~~~~--~~~------------------------------------  159 (314)
                             +..+++       .....+..+..   ++...  ...                                    
T Consensus       185 ~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~  264 (412)
T PF01770_consen  185 KRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYY  264 (412)
T ss_pred             CcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHH
Confidence                   111000       00000000000   00000  000                                    


Q ss_pred             ----------cc---cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhcchhHHH
Q psy10938        160 ----------TC---SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK--WFLVAGLVLSSGVAMALYYVQTSTQNL  224 (314)
Q Consensus       160 ----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (314)
                                +.   .+.....-+..-....+.+.++.+..|++..++.+.  ..+.....+.+.+++++.+.++.|..+
T Consensus       265 qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y  344 (412)
T PF01770_consen  265 QVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCY  344 (412)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                      11   233334445556666677777888888885555543  344455566666777777888888888


Q ss_pred             HHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhh
Q psy10938        225 ILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGG  269 (314)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~  269 (314)
                      ...+++........+....-++.....+.-+-..|+...+.-+-.
T Consensus       345 ~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ  389 (412)
T PF01770_consen  345 AGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ  389 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence            888887777777777776666666666666777777766654433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.04  E-value=0.0001  Score=59.96  Aligned_cols=119  Identities=12%  Similarity=0.052  Sum_probs=82.6

Q ss_pred             CCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHHhhh
Q psy10938        163 GEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-------TSTQNLILSCIFEALTG  235 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  235 (314)
                      +.+..+...+.....++..+| +..|.+.|++|++.++.++.+...++...+...-       +.|......++.+.+..
T Consensus        33 ~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~  111 (250)
T PF06813_consen   33 GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC  111 (250)
T ss_pred             CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence            345667777777777887775 7889999999999999999999988887775542       12222222333332322


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      ...........+.+| ++||++.|+.-....+++.+-..+...+.+..
T Consensus       112 ~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen  112 WFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             HhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence            233333444557787 57999999999999988888777776666553

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.02  E-value=0.0003  Score=59.61  Aligned_cols=149  Identities=13%  Similarity=0.014  Sum_probs=98.7

Q ss_pred             ccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchh
Q psy10938        161 CSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      ..+....++............+...+.|.+.||+|||+..+...++..++++.- ..++.+..++.-++.|......++.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS~  141 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFSA  141 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH
Confidence            446677788888888778888888899999999999999999888888888654 3456666666667777766666665


Q ss_pred             hee-eecc----cccchhhHHHHHHHHhh-hhhhhhhHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHh-cccCCC
Q psy10938        241 VYC-IMVD----LFPTNLRVLAAALSSTF-GRFGGLTGNLMFGFLIDGHC---LILICTLAAMLLIAGVFSMF-LPATGK  310 (314)
Q Consensus       241 ~~~-~~~~----~~p~~~r~~~~g~~~~~-~~~g~~~~p~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~  310 (314)
                      .-+ ++.|    -+|++..+...+..... +.+-.+.+..+.-.+.|..+   ..+|.....+..++.++... .+|..+
T Consensus       142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG  221 (354)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence            433 2233    35666666666655533 33445555556656666543   45677766666666665443 355443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.96  E-value=0.00046  Score=64.37  Aligned_cols=139  Identities=14%  Similarity=0.072  Sum_probs=98.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcch--------hHHHHHHHHHHHhhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTS--------TQNLILSCIFEALTG  235 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  235 (314)
                      +...+......+....-+.++++|++.|+ +|+++.+.++.++..++.+++.+...+        ...+....+...+.+
T Consensus        21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~G  100 (654)
T TIGR00926        21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTG  100 (654)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcc
Confidence            44455555556666666778889999997 599999999998888888777653211        123344555666788


Q ss_pred             hhchhheeeecccccch---hhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh-------h-HHHHHHHHHHHHHHHHHHH
Q psy10938        236 CCISVVYCIMVDLFPTN---LRVLAAALSSTFGRFGGLTGNLMFGFLIDGH-------C-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~-------~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      ..-+...+...|.++++   .|-..+.+.....++|+.+++++.+++.+..       + ...|.+.+++++++.++..
T Consensus       101 giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       101 GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888653   4677888888889999999999999887543       2 3455555555655555443

>KOG0637|consensus

Probab=97.95  E-value=2.2e-05  Score=67.90  Aligned_cols=81  Identities=14%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhccc----ccchhHHH-HHHHHHHHHHhHHHHh
Q psy10938         38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITL-IGALLVDGLCGIASSV  112 (314)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~  112 (314)
                      +-..+.+..--..+|++.++.|++....+.+--...+...+.||+.|..+|    ||||||.+ ..+.....++.++..+
T Consensus        42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~  121 (498)
T KOG0637|consen   42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY  121 (498)
T ss_pred             HHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence            333344444445677788889999999999888888999999999999999    68988866 4555666777778887


Q ss_pred             hhHHHH
Q psy10938        113 AQYYGV  118 (314)
Q Consensus       113 ~~~~~~  118 (314)
                      +.++..
T Consensus       122 aaDig~  127 (498)
T KOG0637|consen  122 AADIGL  127 (498)
T ss_pred             HhhhhH
Confidence            766544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.00091  Score=59.20  Aligned_cols=142  Identities=13%  Similarity=0.062  Sum_probs=93.7

Q ss_pred             HHHHhhccccccc-cccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhh--HHHHHHH
Q psy10938         45 TVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFLA  121 (314)
Q Consensus        45 ~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~  121 (314)
                      ...+.....+.+. +|.++.+..+.......+..++.+++.++++|+|+|+++..+.++..++.++..+.+  +.+..++
T Consensus       253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~  332 (467)
T COG2211         253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV  332 (467)
T ss_pred             HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence            3334444444433 455666677888888888888899999999999999999999999999999988876  7888888


Q ss_pred             HHHHhhcccC---CCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhH
Q psy10938        122 LRFINGFASR---PLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAK  197 (314)
Q Consensus       122 ~r~l~G~~~~---Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  197 (314)
                      ..++.++|.+   |++-..-.+..+..| ++..+++          .+...+......=++..++..+.|++.+.+|..
T Consensus       333 ~~~i~~~g~~~~~~l~wam~~d~vDyge-~~TG~R~----------eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         333 ALIIAGVGTGIANPLPWAMVADTVDYGE-WKTGVRR----------EGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHhhccccccHHHhcchhhHHH-HHhCCCc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8899888887   211000001111111 1111111          223333344444467777888888888888744

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.93  E-value=0.0032  Score=55.65  Aligned_cols=116  Identities=9%  Similarity=-0.020  Sum_probs=77.9

Q ss_pred             cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhcc-h---hHHH---HHHHH
Q psy10938        160 TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQT-S---TQNL---ILSCI  229 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~~---~~~~~  229 (314)
                      ...|.++...+..-....+.++.|.++..++.+|+|..+.-.++......++.+.   .+.+. +   ....   ....+
T Consensus       286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~  365 (432)
T PF06963_consen  286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL  365 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence            3457777888888888889999999999999999998776666655444333322   22332 1   1111   11111


Q ss_pred             HHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHH
Q psy10938        230 FEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLM  275 (314)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~  275 (314)
                      .-++.-+.--....+..|.+|+++||+..|.-+...++...+.-.+
T Consensus       366 SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  366 SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            2223333344456788999999999999999999998877765444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332|consensus

Probab=97.90  E-value=6.3e-05  Score=60.78  Aligned_cols=228  Identities=16%  Similarity=0.098  Sum_probs=131.1

Q ss_pred             HHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q psy10938         46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (314)
Q Consensus        46 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  125 (314)
                      ..+|.+-.+-+.+|....++|.+.-..+-...+...+.|.++||-|||+.-+.-++-+.++. +.-.++.|-.++++|.+
T Consensus        55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVL  133 (454)
T ss_pred             hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhh
Confidence            44566667777889999999999888888888999999999999999997555444444332 33457889999999999


Q ss_pred             hhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh--hHHHHHHH
Q psy10938        126 NGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG--AKWFLVAG  203 (314)
Q Consensus       126 ~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~  203 (314)
                      .|+..+-|-    ..-+.+.-..++.++.  .  +....+....-......++..+++.+.+-.++|.++  +-..+-..
T Consensus       134 GGiaTsLLF----SaFEsWliaEHnekr~--F--eqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAA  205 (454)
T KOG4332|consen  134 GGIATSLLF----SAFESWLIAEHNEKRG--F--EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAA  205 (454)
T ss_pred             hhHHHHHHH----HHHHHHHHHHhhhccC--C--hHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence            999886100    0000000000000000  0  000001122222334455667777788888888875  33333333


Q ss_pred             HHHHHHHHHHH--HHhcch-----------------------hHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHH
Q psy10938        204 LVLSSGVAMAL--YYVQTS-----------------------TQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAA  258 (314)
Q Consensus       204 ~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~  258 (314)
                      ....+++..+.  .+..+.                       --...+..+-..+.+..+...+.+.+.+-|.+ .+.-.
T Consensus       206 acfLaigmAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~-e~iPh  284 (454)
T KOG4332|consen  206 ACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEIPH  284 (454)
T ss_pred             HHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCc-ccCCc
Confidence            33333333222  222110                       01122233344566666666677777776543 34445


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        259 ALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       259 g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      |+......+.+.+|+-+...+..+.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s  309 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRS  309 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcC
Confidence            6666666677777777776776553

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.88  E-value=0.00027  Score=59.13  Aligned_cols=91  Identities=30%  Similarity=0.390  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhcccccccccccc--chhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhH--H
Q psy10938         41 AISITVLSFVLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--Y  116 (314)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~  116 (314)
                      ..+.....+..+.+.++++.+.  .+.++..+.+.++..+++++.|.++||+|||+.+..+......+.+...+..+  .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          15 GLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence            3555555667777777777666  48899999999999999999999999999999888888776666667777665  8


Q ss_pred             HHHHHHHHHhhcccC
Q psy10938        117 GVFLALRFINGFASR  131 (314)
Q Consensus       117 ~~l~~~r~l~G~~~~  131 (314)
                      +.+++.|+.+|++.+
T Consensus        95 ~~~~~~~~~~g~~~~  109 (338)
T COG0477          95 ALLLILRLLQGLGGG  109 (338)
T ss_pred             HHHHHHHHHHHhhhH
Confidence            999999999998887

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.80  E-value=0.00069  Score=50.94  Aligned_cols=109  Identities=15%  Similarity=0.094  Sum_probs=87.2

Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      .-..+......+..++.+.+.+++|.|+.+.++.+...+..+.. +.++.+..+....+.|++.+..+...-.++.+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            33445555566777888999999999999999988887666554 44566777888888999999999999899999988


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      ++.+++-.++...+.+.+.++|..+.-.+.
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998888888888877764443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.65  E-value=0.0012  Score=61.60  Aligned_cols=153  Identities=12%  Similarity=-0.069  Sum_probs=99.5

Q ss_pred             cccccccccccchhhHHhHhhHHHHHHhhhhhhhccc-ccchhHHHHHHHHHHHHHhHHHHhhhH--------HHHHHHH
Q psy10938         52 PSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASSVAQY--------YGVFLAL  122 (314)
Q Consensus        52 ~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~  122 (314)
                      ..+.+.+|.+.++...+...+....-+..++.|+++| ++||++.+.++.++..++..+.+++..        ....+++
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g   91 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG   91 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence            3344568889998888899998888999999999999 589999999999999999888776421        2235556


Q ss_pred             HHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh-------h
Q psy10938        123 RFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM-------G  195 (314)
Q Consensus       123 r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------g  195 (314)
                      -.+..+|.||.+   +.-..-..+..+..+.+.         ....-.+.....+++..++..+.+++.+++       +
T Consensus        92 LaLia~G~GgiK---p~vsaf~gdqf~~~~~~~---------~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~  159 (654)
T TIGR00926        92 LALIALGTGGIK---PCVSAFGGDQFEERQLSL---------RSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC  159 (654)
T ss_pred             HHHHHhhccccc---cCchhhhHhhcCccchhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence            666777777321   111111222222111000         122344555666777888888888887664       3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy10938        196 AKWFLVAGLVLSSGVAMALYY  216 (314)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~  216 (314)
                      +.....+..+++.++++.+..
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.61  E-value=0.0045  Score=53.92  Aligned_cols=104  Identities=15%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHhcchhHHHHHHHHHHHhhhhhchhheeeecc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMA---LYYVQTSTQNLILSCIFEALTGCCISVVYCIMVD  247 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (314)
                      .+...+.++.++++-....+  |+.+.+.+.....+..+.+++   ..+.++.|..+..++.-|...+..+...+..+.|
T Consensus       285 ~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~  362 (402)
T PF02487_consen  285 WYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE  362 (402)
T ss_pred             HHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            44555666655554433322  343444443333333333322   2345677777777788888888888888888888


Q ss_pred             cccchhhHHHHHHHHhhhhhhhhhHHHHH
Q psy10938        248 LFPTNLRVLAAALSSTFGRFGGLTGNLMF  276 (314)
Q Consensus       248 ~~p~~~r~~~~g~~~~~~~~g~~~~p~~~  276 (314)
                      ..|+++|-.++|.....-.+|..++..++
T Consensus       363 ~~~~~~REFslg~vsvsds~GI~lAgll~  391 (402)
T PF02487_consen  363 EVPPEDREFSLGAVSVSDSLGILLAGLLG  391 (402)
T ss_pred             cCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            89999999999999988888887777765

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098|consensus

Probab=97.43  E-value=0.018  Score=51.17  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             hhHH-hHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC
Q psy10938         65 KGWL-NAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR  131 (314)
Q Consensus        65 ~g~~-~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  131 (314)
                      .|.. .++.+..+.+.+++.+.+.|+.|.|+.+.++..........+-+-+ -+-++.+-.+.|+|.+
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaa  117 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAA  117 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHH
Confidence            3443 7888888999999999999999999999999999988776665554 5557788899999998

>KOG4686|consensus

Probab=97.36  E-value=0.002  Score=52.86  Aligned_cols=122  Identities=12%  Similarity=0.024  Sum_probs=80.1

Q ss_pred             ccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH-HhHHHHhhhHHHHHHHHHHHhhcccC
Q psy10938         53 SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL-CGIASSVAQYYGVFLALRFINGFASR  131 (314)
Q Consensus        53 ~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~  131 (314)
                      .+++.||+|+...+.+.|....-.++.+++.|.++||+|++...+.+..+..+ +.....++  ++.=..+-.+.|+..+
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence            46788999999999999999999999999999999999999887666554443 33333332  1111223344555443


Q ss_pred             CCCCCCcccchh----hhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh
Q psy10938        132 PLIPGHPGKVAS----VCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG  195 (314)
Q Consensus       132 Pl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  195 (314)
                             --..+    ......+.+            .+..-+...++.+++-.+.+++.|.+.|.-|
T Consensus       368 -------llAcslWP~va~~vpE~q------------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  368 -------LLACSLWPCVASLVPEEQ------------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             -------HHHHHHhhhhhhhCCHHH------------hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence                   00000    001111111            3445567788888888899999999999766

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.31  E-value=0.0092  Score=51.67  Aligned_cols=130  Identities=18%  Similarity=0.075  Sum_probs=93.0

Q ss_pred             hccccccccccccchhhHHhHhhHHHHHHhhhhhhhccc-ccchhHHHHHHHHHHHHHhHHHH---hhhHHHHHHHHHHH
Q psy10938         50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASS---VAQYYGVFLALRFI  125 (314)
Q Consensus        50 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l  125 (314)
                      +-|+=.+-||++..|...+......|..++-...|++.. |.++|+.-.+++....++..+..   ...+.+.+...-++
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            345556679999999999999999999999999998877 77888887788887777666544   44678889999999


Q ss_pred             hhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh
Q psy10938        126 NGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM  194 (314)
Q Consensus       126 ~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  194 (314)
                      .|++.|   -   -.........+-...         +......+...........++...+|.+.|-.
T Consensus       311 ~G~g~G---~---f~vgals~mM~lt~~---------~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  311 LGLGNG---L---FTVGALSLMMDLTSA---------GRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHhhh---H---HHHHHHHHHHhCCCC---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998   1   111111111111110         01345566667777778888888899888864

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.30  E-value=0.0028  Score=56.56  Aligned_cols=139  Identities=18%  Similarity=0.208  Sum_probs=89.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHhhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMG-----AKWFLVAGLVLSSGVAMALYYVQT----STQNLILSCIFEALTG  235 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  235 (314)
                      ++.+...+.....+-. ....+.|.++|.+.     ||+.+.++.++..++...+...+.    .....+..++..++..
T Consensus        23 s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a  101 (433)
T PF03092_consen   23 SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYA  101 (433)
T ss_pred             CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            4444444444443333 24667899999873     566666677777665665555443    2333344444555556


Q ss_pred             hhchhheeeecccc---cchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10938        236 CCISVVYCIMVDLF---PTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       236 ~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ..-...-+...|..   |.+ ++...+.......+|++++..+.|.+.+..+ ...+.+.+.+..+..+..+++
T Consensus       102 ~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  102 FADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             HHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence            66666666777765   333 7888899999999999999999999999876 445666666655555554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.26  E-value=0.003  Score=52.76  Aligned_cols=115  Identities=23%  Similarity=0.206  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQT--STQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      ..........+....+.+..|.+.||+|||+....+........+...+..+  .+.........+...+...+....+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4566677777777788899999999999997776666543444444444444  34444444446667777888888999


Q ss_pred             cccccc-hhhHHHHHHHHh-hhhhhhhhHHHHHHHHHhh
Q psy10938        246 VDLFPT-NLRVLAAALSST-FGRFGGLTGNLMFGFLIDG  282 (314)
Q Consensus       246 ~~~~p~-~~r~~~~g~~~~-~~~~g~~~~p~~~g~l~~~  282 (314)
                      .|..|+ +.|+...+.... ...++..++|.+.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987 678888888888 5778888998887777765

>KOG3762|consensus

Probab=97.22  E-value=0.00057  Score=60.70  Aligned_cols=162  Identities=14%  Similarity=0.014  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHH
Q psy10938         39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGV  118 (314)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      +.+.....+...+=...||.+-.+...|.....-..+-.+.-++.+++.+|+|+-+++..++++..+=.+.....+|+|+
T Consensus       382 ~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~  461 (618)
T KOG3762|consen  382 VMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWM  461 (618)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchh
Confidence            33444433334445567888888888888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCcccchhhh---hhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhh
Q psy10938        119 FLALRFINGFASRPLIPGHPGKVASVC---DVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMG  195 (314)
Q Consensus       119 l~~~r~l~G~~~~Pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  195 (314)
                      .+-..+++|+..+       .--....   +....+..+          ...+..+.....+++--+|++++|.+..|+|
T Consensus       462 vLPieilqgit~a-------liWaa~~sY~s~vaPp~l~----------at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  462 VLPIEILQGITHA-------LIWAAIISYASHVAPPGLR----------ATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             eeeHHHHHHHHHH-------HHHHHHHHHHHhhCCCcch----------HHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            9999999999887       1111100   111111100          2234445556677888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q psy10938        196 AKWFLVAGLVLSSGVAMALYYV  217 (314)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~  217 (314)
                      -|....+..+.+.+.++.+...
T Consensus       525 ~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  525 ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Confidence            9988887777766666665443

>KOG2325|consensus

Probab=97.04  E-value=0.0082  Score=53.51  Aligned_cols=145  Identities=14%  Similarity=-0.003  Sum_probs=97.0

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHH---hcch--hHHHHHHHHHHHhhh
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGA-KWFLVAGLVLSSGVAMALYY---VQTS--TQNLILSCIFEALTG  235 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~  235 (314)
                      .+......++..+...++..++.+..|+...|.+. |+.+..+.+++.++.++...   .++.  +.++..-++.|++ .
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg-~  144 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG-V  144 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC-c
Confidence            55566778888889999999999999999999885 77888888888888877632   2332  2233333333322 2


Q ss_pred             hhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh--------------hhHHHHHHHHHHHHHHHHH
Q psy10938        236 CCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG--------------HCLILICTLAAMLLIAGVF  301 (314)
Q Consensus       236 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~--------------~~~~~~~~~~~~~~~~~~~  301 (314)
                      +.....-.|+++..-.++|.++++..+....+|.++||.+...+.-.              ..+.+-|+.+++.++..+.
T Consensus       145 ~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~  224 (488)
T KOG2325|consen  145 GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI  224 (488)
T ss_pred             ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence            33455667888876667788888888776677777777765443321              1134667777777776665


Q ss_pred             HH-hccc
Q psy10938        302 SM-FLPA  307 (314)
Q Consensus       302 ~~-~~~~  307 (314)
                      .. +++|
T Consensus       225 i~~~f~E  231 (488)
T KOG2325|consen  225 ILFFFKE  231 (488)
T ss_pred             HHhheee
Confidence            44 3454

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.92  E-value=0.056  Score=47.32  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=90.7

Q ss_pred             hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHH
Q psy10938        182 PSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALS  261 (314)
Q Consensus       182 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~  261 (314)
                      ..-+....+.|.++.|.+++...+...+...++.+.++...+-+.-+..|..... -...++++-..+|+++.-++.+..
T Consensus        56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~  134 (412)
T PF01770_consen   56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYT  134 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHH
Confidence            3445778899999999999999998888888888888877766666666644333 344556776777888888999999


Q ss_pred             HhhhhhhhhhHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhcccCC
Q psy10938        262 STFGRFGGLTGNLMFGFLIDGHC---LILICTLAAMLLIAGVFSMFLPATG  309 (314)
Q Consensus       262 ~~~~~~g~~~~p~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  309 (314)
                      ....-+|..++..++-.+....+   .....+......++.+..+++|..+
T Consensus       135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99888888888888766665433   2223344444555556667776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.76  E-value=0.09  Score=47.26  Aligned_cols=98  Identities=8%  Similarity=0.000  Sum_probs=72.5

Q ss_pred             HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--c-----------------------------chhHHHHHHHHHHH
Q psy10938        184 SLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV--Q-----------------------------TSTQNLILSCIFEA  232 (314)
Q Consensus       184 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~  232 (314)
                      .++.+++++|++|++.+..........++++.+.  +                             +.|...........
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            6778999999999998887776666666555443  1                             01222233333444


Q ss_pred             hhhhhch-hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        233 LTGCCIS-VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       233 ~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      ......+ ..++++.|....++-.+-+++....+++|..+++.+..++.+
T Consensus       141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555 678999999999999999999999999999999999888773

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2563|consensus

Probab=96.76  E-value=0.023  Score=49.83  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch-----hHHHHHHHHHHHhhhhhchh
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTS-----TQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  240 (314)
                      ...+-+...++.+..++-.+.+-|+.||+|-|....++..+.+++..+-.....+     ... .+........+...+.
T Consensus        78 ~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   78 SSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPF  156 (480)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhH
Confidence            3455677788888899999999999999999999999999999888775443222     111 1222223333333333


Q ss_pred             he---eee-cccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhh
Q psy10938        241 VY---CIM-VDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGH  283 (314)
Q Consensus       241 ~~---~~~-~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~  283 (314)
                      ..   +-+ .-.+|+++|+++..+......+|.+++-++-..+..+.
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            32   223 33489999999999999988899998888877776554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.58  E-value=0.072  Score=40.11  Aligned_cols=73  Identities=12%  Similarity=0.036  Sum_probs=57.9

Q ss_pred             cccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCC
Q psy10938         60 MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPL  133 (314)
Q Consensus        60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl  133 (314)
                      +++..--.-.++......+++++.+.+.+++|.|+.++++.+...+-... -+-++.+.++.+-.+.|++.+++
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~l  106 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALL  106 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHh
Confidence            33333334466777788889999999999999999999999998864443 45778889999999999999953

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.19  E-value=0.018  Score=37.59  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL  206 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  206 (314)
                      .+.+..+.+....+..+..++++++.|.++||+++++........
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            456788999999999999999999999999999988877655433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.15  E-value=0.042  Score=48.07  Aligned_cols=107  Identities=12%  Similarity=-0.039  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--cch-------hHHHHHHHHHHHhhhhhchhheeeecccccch---hhHHHHHHHHhhh
Q psy10938        198 WFLVAGLVLSSGVAMALYYV--QTS-------TQNLILSCIFEALTGCCISVVYCIMVDLFPTN---LRVLAAALSSTFG  265 (314)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~  265 (314)
                      +++.++.++..++.+++...  +..       ...++...+..++.++.-|...++.+|.++++   .|.+.+.......
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45667777777777774332  221       34566666778889999999999999998765   4677778888888


Q ss_pred             hhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        266 RFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       266 ~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      ++|+.+++...+++.++.+ ...|.+.++..+++.+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999998888 45566666666665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3574|consensus

Probab=96.15  E-value=0.04  Score=47.32  Aligned_cols=53  Identities=13%  Similarity=0.126  Sum_probs=43.5

Q ss_pred             HHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy10938        230 FEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG  282 (314)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~  282 (314)
                      .+.+....+...++..+++.++..-|+.+.+.|+..++|+-.=..+...+.|.
T Consensus       379 ~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~  431 (510)
T KOG3574|consen  379 HQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG  431 (510)
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence            33444555566788899999999999999999999999998888888888874

>KOG3098|consensus

Probab=95.76  E-value=0.18  Score=44.93  Aligned_cols=107  Identities=15%  Similarity=0.106  Sum_probs=89.5

Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      ....+......+..++++.+.|+.+.|+.+.++........+.+.+. +.+-.+....+.|++.+..+...-.+..|...
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            33667777788889999999999999999999998888777777655 46667778888898999889999999999999


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHH
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGF  278 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~  278 (314)
                      ++.+.+..++...+...+.++|..+.-.
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            9999999999999998888887666533

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.63  E-value=1.6  Score=39.38  Aligned_cols=63  Identities=6%  Similarity=-0.080  Sum_probs=47.2

Q ss_pred             cccccccccc-----ccchhhHHhHhhHHHHHHh-hhhhhhcccccchhHHHHHHHHHHHHHhHHHHhh
Q psy10938         51 LPSAQCDFGM-----TSSDKGWLNAAPMLGMVFG-SYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (314)
Q Consensus        51 ~~~~~~~~~~-----s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  113 (314)
                      +-++++++.+     +.+.+.++-+...+..++. .++.+++++|++|++++-.....+.....++++.
T Consensus        26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            4455666555     3357888888887777777 8999999999999999888777777666665543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.50  E-value=0.11  Score=34.54  Aligned_cols=61  Identities=16%  Similarity=0.045  Sum_probs=53.0

Q ss_pred             cCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhH
Q psy10938        162 SGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQ  222 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (314)
                      .+.+..+.++..+...++..+|.+...++.++.+++..+..+.+...+..+.+.+.++.+.
T Consensus        22 ~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen   22 GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            3457889999999999999999999999999988888899999999999888888776654

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=95.08  E-value=0.59  Score=42.87  Aligned_cols=132  Identities=18%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHhcc-----hhHHHHHHHHHHHhhhhhc
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL---SSGVAMALYYVQT-----STQNLILSCIFEALTGCCI  238 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  238 (314)
                      ...+...+.+..+..+|..+++++.++.-++... .-..+   ..++..++.....     ....+...++.+++.++..
T Consensus        50 ~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  128 (521)
T PRK03612         50 TQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEI  128 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666677777777777765433322221 11111   1111111111101     1112233344556677777


Q ss_pred             hhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh-hhh-HHHHHHHHHHHHHHHH
Q psy10938        239 SVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID-GHC-LILICTLAAMLLIAGV  300 (314)
Q Consensus       239 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~-~~~-~~~~~~~~~~~~~~~~  300 (314)
                      |...-...+.. .+.-+...|-......+|+++|+++.+++.- ..| ....++.+.+.+++++
T Consensus       129 Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        129 PLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            76655444432 2234667788888999999999999988765 455 3444444444444443

>KOG3097|consensus

Probab=94.22  E-value=3.1  Score=35.43  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=46.5

Q ss_pred             HHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCC
Q psy10938         73 MLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPL  133 (314)
Q Consensus        73 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl  133 (314)
                      .+..+.++++.+.+.+++|.|+.+.++....... +..-+-+.++.++-.-...|++.+|+
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~  127 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPI  127 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccc
Confidence            4455566666669999999999999888877653 33344578889999999999999974

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.01  E-value=0.01  Score=54.34  Aligned_cols=118  Identities=8%  Similarity=-0.032  Sum_probs=1.9

Q ss_pred             CCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----c--------------------
Q psy10938        164 EVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----T--------------------  219 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~--------------------  219 (314)
                      .+..+.+.+.+..-++..+..++..++.+|..|-+.+..+.++.+++.+++..-+    .                    
T Consensus        35 l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c  114 (539)
T PF03137_consen   35 LSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLC  114 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccc
Confidence            4667888888889999999999999999998888888888888888877764321    0                    


Q ss_pred             --------------------------hhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHH
Q psy10938        220 --------------------------STQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGN  273 (314)
Q Consensus       220 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p  273 (314)
                                                ...++...++.|++....+++..+|+-|.++++..+...|+......+|-++|=
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf  194 (539)
T PF03137_consen  115 DSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGF  194 (539)
T ss_dssp             -------------------------------------SSS----------------------------------------
T ss_pred             cccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHH
Confidence                                      001222334456666777888899999999999999999999998888888887


Q ss_pred             HHHHHHHh
Q psy10938        274 LMFGFLID  281 (314)
Q Consensus       274 ~~~g~l~~  281 (314)
                      .++|...+
T Consensus       195 ~lg~~~L~  202 (539)
T PF03137_consen  195 LLGSFCLR  202 (539)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            77776653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479|consensus

Probab=93.88  E-value=3.5  Score=36.23  Aligned_cols=107  Identities=12%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             HHHHH-HHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------HhcchhHHHHHHHHHHHhhhhhchh
Q psy10938        171 SHTLI-IGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALY---------YVQTSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      ..... +++...+|.....+..++- ||+. .+...+-.+..-++.         ...+.+.......++++..|-..+.
T Consensus       286 ~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  286 LLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            33444 6677777766665554432 2322 222222222222222         2335667777788888888888888


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI  280 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~  280 (314)
                      .+.+.++.+|++++-.+-.+...+-..|-..|.. .+++.
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~-~s~l~  402 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL-LSWVF  402 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence            9999999998887655444444444444444443 33443

>KOG3626|consensus

Probab=93.87  E-value=0.16  Score=47.78  Aligned_cols=143  Identities=12%  Similarity=0.033  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-------------------c----------
Q psy10938        169 VFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ-------------------T----------  219 (314)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~----------  219 (314)
                      .+++...+-++..+......+...|..|-+.+.++.+++++..++..+.+                   .          
T Consensus       134 sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~  213 (735)
T KOG3626|consen  134 SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCN  213 (735)
T ss_pred             ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhcc
Confidence            44444444555666666677777777777777777777777776654321                   0          


Q ss_pred             ----------------------hh-HHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHH
Q psy10938        220 ----------------------ST-QNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMF  276 (314)
Q Consensus       220 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~  276 (314)
                                            ++ .++...++.|.+....++...+|+-|.+.+++.+...|+..++..+|-++|=+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllg  293 (735)
T KOG3626|consen  214 KSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLG  293 (735)
T ss_pred             CCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHH
Confidence                                  01 1223344456667777888889999999999889999999999888888888887


Q ss_pred             HHHHhhh------------------h--HHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy10938        277 GFLIDGH------------------C--LILICTLAAMLLIAGVFSMFLPATGKK  311 (314)
Q Consensus       277 g~l~~~~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (314)
                      +...+.+                  |  |..|++.+.+.++.++..+++|++.++
T Consensus       294 S~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  294 SFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            7775421                  2  345677777888887777777765443

>KOG1237|consensus

Probab=93.72  E-value=2.5  Score=39.30  Aligned_cols=162  Identities=11%  Similarity=-0.034  Sum_probs=103.6

Q ss_pred             HHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHHHhHHHHhhhHHH--------
Q psy10938         47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQYYG--------  117 (314)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------  117 (314)
                      ...++..+.++++.+...+.-..+.+.-......+..++++|- +||-+++.++.++..++..+...+....        
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            3566777888888888888888888888888999999999995 6799999999999888866555433222        


Q ss_pred             -----------------HHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhh
Q psy10938        118 -----------------VFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLAC  180 (314)
Q Consensus       118 -----------------~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (314)
                                       .+..+.-+..+|.|+   .++.-..--.|.++....+      .......-..+...-...+.
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg---~r~~~~~fGadQfd~~~~~------~~~~~~~fFnW~yf~~~~g~  207 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGG---IRPCLLAFGADQFDELDPV------EVKGIPSFFNWFYFSQNGGA  207 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCC---CCCcchhhcccccCccCcc------hhhCcccchhHHHHHHHHHH
Confidence                             344445555556651   1111111111111110000      00112334455666667777


Q ss_pred             hhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q psy10938        181 IPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV  217 (314)
Q Consensus       181 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  217 (314)
                      .++..+..++-|..++..-.-+......++++++...
T Consensus       208 l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  208 LLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             HHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            7777788888888888877777777777666665443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.36  E-value=4.4  Score=36.88  Aligned_cols=103  Identities=8%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             hhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--c-------ch----------------------hHHHHHH
Q psy10938        179 ACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV--Q-------TS----------------------TQNLILS  227 (314)
Q Consensus       179 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~-------~~----------------------~~~~~~~  227 (314)
                      ..++...+-.++.+++++.+++..........+.++.+.  |       +.                      |......
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            445556778899999999998776665555555544332  1       11                      1111222


Q ss_pred             HHHHHhhhhhch-hheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        228 CIFEALTGCCIS-VVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       228 ~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      +..........+ ..+.++.|....++..+-+++....+++|.++++.+..++.+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222323333344 458999999999999999999999999999999999888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=89.98  E-value=0.53  Score=41.16  Aligned_cols=112  Identities=10%  Similarity=-0.049  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhHHHHhhh---------HHHHHHHHHHHhhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCC
Q psy10938         94 ITLIGALLVDGLCGIASSVAQ---------YYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGE  164 (314)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |.+.++.++..+|.++..++.         +.+.++++-.+.++|.|   --++....-..|..++.+..+         
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G---~~K~ni~~~~~dq~~~~~~~~---------   69 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG---GIKPNISPFGADQYDEDDDSR---------   69 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH---CCHHHHHHHHHHCSSTTTTTH---------
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc---cccccHHHHHHHHhcccchhh---------
Confidence            567888888888888844432         23568888888899988   222222222333333221000         


Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYV  217 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  217 (314)
                      ....-.+.....+++..++....+++.|++|+...+.+..+.+.++++.+...
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            12233466778888999999999999999999999888888888888776554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3810|consensus

Probab=89.70  E-value=0.21  Score=42.51  Aligned_cols=130  Identities=13%  Similarity=0.098  Sum_probs=80.9

Q ss_pred             HHHHHhhhhhHHhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        173 TLIIGLACIPSSLAMPLLVHKMGAK--WFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      -.+..+.+.++.+..|.+.-++.|.  ..+..+....+-..+.+...++.|..++...++........++...-+++...
T Consensus       277 eAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~  356 (433)
T KOG3810|consen  277 EAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLS  356 (433)
T ss_pred             HHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhh
Confidence            3455566677777788776555544  34445555555555666667777887777777777777777777767777777


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHhc
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC------------LILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      .+.-|-.+|+..++.-+-..+-..+   ..|..|            ..-|.+.+++.++...+....
T Consensus       357 ~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  357 SELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            7777888887776655444433332   233222            123666777777765554433

>PRK03612 spermidine synthase; Provisional

Probab=89.28  E-value=18  Score=33.40  Aligned_cols=132  Identities=13%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             cccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHH-HHHHHH-HHhHHHHhhhHH-----HHHHHHHHHhhc
Q psy10938         56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG-ALLVDG-LCGIASSVAQYY-----GVFLALRFINGF  128 (314)
Q Consensus        56 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-~~~~~~~~~~~~-----~~l~~~r~l~G~  128 (314)
                      .-+|-+..+.+.+.+++..|.++|+..++++.++--|+....- ...+.+ ++..+......+     ..++..-++.++
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  122 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL  122 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788889999999999999999999988744333332211 111111 111111111111     111222334444


Q ss_pred             ccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHHHHHHHhhhhhHHhHHHHH-HHHhhhHHHHHHH
Q psy10938        129 ASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLL-VHKMGAKWFLVAG  203 (314)
Q Consensus       129 ~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l-~d~~g~~~~~~~~  203 (314)
                      ..|       ..-+-..+.......         .......+.......+++++|+++.+++ ...+|-.......
T Consensus       123 l~G-------~~~Pl~~~~~~~~~~---------~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~  182 (521)
T PRK03612        123 LIG-------MEIPLLMRILQRIRD---------QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT  182 (521)
T ss_pred             HHH-------HHHHHHHHHHHhccc---------cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            444       010000111111000         0034456777888889999999998864 4578865544433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=87.02  E-value=2.2  Score=38.12  Aligned_cols=83  Identities=12%  Similarity=0.096  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh
Q psy10938         28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (314)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  107 (314)
                      .-++...++..+.++....+......+.+.-|+++..+|..-+...+....+.+...++.+|+|..|.-.++........
T Consensus       258 q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  258 QPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            34555555555555554455555555555569999999999999999999999999999999999988888877665544


Q ss_pred             HHH
Q psy10938        108 IAS  110 (314)
Q Consensus       108 ~~~  110 (314)
                      .++
T Consensus       338 ~~~  340 (432)
T PF06963_consen  338 ALC  340 (432)
T ss_pred             HHH
Confidence            443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.75  E-value=3.1  Score=37.37  Aligned_cols=108  Identities=16%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH------------HhcchhHHHHHHHHHHHhh
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKMGAK-WFLVAGLVLSSGVAMALY------------YVQTSTQNLILSCIFEALT  234 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  234 (314)
                      ..-.....++++..+|+.+..+..- -++| +.+.+..+.=.+...++.            +.++.+..++..+++++..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            3445667778888888886654311 1122 122222333233222222            2235566677788888888


Q ss_pred             hhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHH
Q psy10938        235 GCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMF  276 (314)
Q Consensus       235 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~  276 (314)
                      |-..+..+.+.++..++++|..+-.+...+-.+|-.+|..+.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888999999988888887777777777777776654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.92  E-value=14  Score=32.68  Aligned_cols=119  Identities=13%  Similarity=0.085  Sum_probs=67.6

Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeeeccccc
Q psy10938        171 SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFP  250 (314)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  250 (314)
                      .....-.+-.++..++..++.+|+..+.-......++.+++++..+.++.+.-+....+.++..+..-....++.. .+|
T Consensus        63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~  141 (402)
T PF02487_consen   63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG  141 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence            3344444556677788999999987655555666677778887777777666555555555544444444444433 444


Q ss_pred             chhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh---HHHHHHHHHHH
Q psy10938        251 TNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC---LILICTLAAML  295 (314)
Q Consensus       251 ~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~---~~~~~~~~~~~  295 (314)
                      +.    ..+-..+....++.+|+...-.+.+ .+   ...+.....+.
T Consensus       142 ~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp  184 (402)
T PF02487_consen  142 KS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLP  184 (402)
T ss_pred             cc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHH
Confidence            32    2333333344556666666544444 33   33444444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237|consensus

Probab=82.97  E-value=22  Score=33.17  Aligned_cols=133  Identities=11%  Similarity=-0.023  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhcch--------------------h-----
Q psy10938        168 EVFSHTLIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQTS--------------------T-----  221 (314)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----  221 (314)
                      .+.-....+.......++.+++++|.+ ||-+++.++..+..++..++......                    .     
T Consensus        74 ~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~  153 (571)
T KOG1237|consen   74 GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLA  153 (571)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHH
Confidence            334444555555666778899999975 88888888888877776554332100                    0     


Q ss_pred             HHHHHHHHHHHhhhhhchhheeeecccccc---hh-h--HHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHH
Q psy10938        222 QNLILSCIFEALTGCCISVVYCIMVDLFPT---NL-R--VLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAM  294 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~-r--~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~  294 (314)
                      ..+...-+...+.++.-+...++-+|-+++   +. +  ..-+.......+.|..++-.+.-++-|..+ ...+.+..+.
T Consensus       154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  154 VLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVL  233 (571)
T ss_pred             HHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHH
Confidence            112222223336677778888899998883   22 2  244455555566777777777766666655 3344444444


Q ss_pred             HHHHHH
Q psy10938        295 LLIAGV  300 (314)
Q Consensus       295 ~~~~~~  300 (314)
                      ..++.+
T Consensus       234 ~~lai~  239 (571)
T KOG1237|consen  234 NALAIL  239 (571)
T ss_pred             HHHHHH
Confidence            444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	8e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 17/101 (16%), Positives = 38/101 (37%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
           L++   LL A   ++ T+    +     D  +       +  A +L       F+G ++D
Sbjct: 1   LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD 60

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
             GR+  ++  + +  L  + +       V +A   + G  
Sbjct: 61  RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 22  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 80

Query: 82  FWGCLADTQGRKITLIGALLVDGLC----GIASSVAQYYGVFLALRFINGFASRPLIPG 136
             G ++D    ++ L   L++        G          V   L F+ G+      P 
Sbjct: 81  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.4
2xut_A	524	Proton/peptide symporter family protein; transport	99.3
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.16
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.77

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=8.1e-31  Score=235.34  Aligned_cols=291  Identities=18%  Similarity=0.234  Sum_probs=210.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--------ccchhhHHhHhhHHHHHHhhhhhhhcccccchhHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM--------TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT   95 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~   95 (314)
                      ++.+.+.+..+++.++.++|...++..+|.+.++++.        +..+.|++.+++.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4556666677788899999999999999988887743        33567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHH------------------hhhHHHHHHHHHHHhhcccC--------------C-----------
Q psy10938         96 LIGALLVDGLCGIASS------------------VAQYYGVFLALRFINGFASR--------------P-----------  132 (314)
Q Consensus        96 l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~--------------P-----------  132 (314)
                      +.++.+++.++.++++                  +++|+++++++|+++|++.|              |           
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999988                  58899999999999999988              1           


Q ss_pred             ----------------------------------------------------CC--------CCCcccch-hhhhhh---
Q psy10938        133 ----------------------------------------------------LI--------PGHPGKVA-SVCDVS---  148 (314)
Q Consensus       133 ----------------------------------------------------l~--------~~~~~~~~-~~~~~~---  148 (314)
                                                                          ++        +.+.++.. ..++..   
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence                                                                00        00000000 000000   


Q ss_pred             --------------cCCcCCC-----cCcc---------------------------cccCCCChhHHHHHHHHHhhhhh
Q psy10938        149 --------------ALQPADN-----STVA---------------------------TCSGEVNPEVFSHTLIIGLACIP  182 (314)
Q Consensus       149 --------------~~~~~~~-----~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~  182 (314)
                                    +.++...     ....                           ...+.............++...+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT  327 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence                          0000000     0000                           22344455566667777888999


Q ss_pred             HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH-HHhhhhhchhheeeecccccchhhHHH
Q psy10938        183 SSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLILSCIF-EALTGCCISVVYCIMVDLFPTNLRVLA  257 (314)
Q Consensus       183 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~r~~~  257 (314)
                      +.++++++.||+|||+.+..+.....++++.+....    +.+.......+. ..+.....+..+.+.+|++|++.|+++
T Consensus       328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~  407 (491)
T 4gc0_A          328 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA  407 (491)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred             HHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence            999999999999999999888888777766554321    122222222222 223344456778899999999999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHH-HhcccCCCCCCC
Q psy10938        258 AALSSTFGRFGGLTGNLMFGFLIDGHC-------LILICTLAAMLLIAGVFS-MFLPATGKKELD  314 (314)
Q Consensus       258 ~g~~~~~~~~g~~~~p~~~g~l~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  314 (314)
                      .|+.+..+++++.+++.+.+.+.+..+       ...+++++++++++.++. +++||||+|++|
T Consensus       408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe  472 (491)
T 4gc0_A          408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  472 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence            999999999999999999887765422       345777888887777765 456999999763

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=9.6e-28  Score=212.87  Aligned_cols=282  Identities=12%  Similarity=0.130  Sum_probs=220.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      ++.+++.+...++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            345677788888888999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHh----hhHHHHHHHHHHHhhcccC--------------C--------------------------------
Q psy10938        103 DGLCGIASSV----AQYYGVFLALRFINGFASR--------------P--------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~--------------P--------------------------------  132 (314)
                      .+++.+++++    ++|++.++++|+++|++.+              |                                
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    9999999999999999988              1                                


Q ss_pred             -------------------------CCCCCcccc-hhhhhhhc--------C---C-cCC-------CcCcc--------
Q psy10938        133 -------------------------LIPGHPGKV-ASVCDVSA--------L---Q-PAD-------NSTVA--------  159 (314)
Q Consensus       133 -------------------------l~~~~~~~~-~~~~~~~~--------~---~-~~~-------~~~~~--------  159 (314)
                                               +++..++.+ .+..+..+        .   + ..+       .+.+.        
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence                                     111111000 00000000        0   0 000       00000        


Q ss_pred             -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hhHHHHHHHHHHHH-HHHHHHHHh
Q psy10938        160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GAKWFLVAGLVLSS-GVAMALYYV  217 (314)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~  217 (314)
                                         +..+.+..+.+.......++.+++.++.+++.||+  +||+.+..+..+.. ++++++.+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  341 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence                               23566777888889999999999999999999999  99988877776666 555555554


Q ss_pred             c--chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhh-HHHHHHHHH
Q psy10938        218 Q--TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLIDGHC-LILICTLAA  293 (314)
Q Consensus       218 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~~~~-~~~~~~~~~  293 (314)
                      +  +.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.|..+ ...+++.++
T Consensus       342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  421 (451)
T 1pw4_A          342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  421 (451)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3  4444555566677777777888889999999999999999999999999 99999999999999877 566777777


Q ss_pred             HHHHHHHHHHhc
Q psy10938        294 MLLIAGVFSMFL  305 (314)
Q Consensus       294 ~~~~~~~~~~~~  305 (314)
                      +.+++.++.++.
T Consensus       422 ~~~~~~~~~~~~  433 (451)
T 1pw4_A          422 GSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=5.6e-27  Score=207.24  Aligned_cols=271  Identities=14%  Similarity=0.139  Sum_probs=209.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938         24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  103 (314)
                      ++++..+..++...+..+++.....+..|.+.+++|+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            34456666777788888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHH---HhhhHHHHHHHHHHHhhcccC--------------C----------------------------CC-CCC
Q psy10938        104 GLCGIAS---SVAQYYGVFLALRFINGFASR--------------P----------------------------LI-PGH  137 (314)
Q Consensus       104 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~--------------P----------------------------l~-~~~  137 (314)
                      +++.+++   .++++++.++++|++.|++.+              |                            +. ...
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999   888999999999999999998              1                            11 111


Q ss_pred             cc------------------------cchhh-------------hhhhcCC---cC-----CCcC-----------cc--
Q psy10938        138 PG------------------------KVASV-------------CDVSALQ---PA-----DNST-----------VA--  159 (314)
Q Consensus       138 ~~------------------------~~~~~-------------~~~~~~~---~~-----~~~~-----------~~--  159 (314)
                      ..                        -+...             .-..+.+   ++     ++..           +.  
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR  261 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHH
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHH
Confidence            00                        00000             0000000   00     0000           00  


Q ss_pred             --------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy10938        160 --------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMA  213 (314)
Q Consensus       160 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  213 (314)
                                                +..+.+..+.+.......++.+++.++.+++.||++||+.+..+..+..++.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  341 (438)
T 3o7q_A          262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI  341 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence                                      122667778888888999999999999999999999999999999888888887


Q ss_pred             HHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-H-HHHHHH
Q psy10938        214 LYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-L-ILICTL  291 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~-~~~~~~  291 (314)
                      ..+.++.+. ....++.+++.+..++..+++..|.+|++ ++++.++.. ...+|+.++|.+.|.+.|..+ . ..+++.
T Consensus       342 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  418 (438)
T 3o7q_A          342 SAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP  418 (438)
T ss_dssp             HHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred             HHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            777766544 34446677788888899999989999876 888888877 677999999999999999877 3 344444


Q ss_pred             HHHHHH
Q psy10938        292 AAMLLI  297 (314)
Q Consensus       292 ~~~~~~  297 (314)
                      +++.++
T Consensus       419 ~~~~~~  424 (438)
T 3o7q_A          419 ALCFAV  424 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            433333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=4.4e-24  Score=191.58  Aligned_cols=249  Identities=10%  Similarity=-0.012  Sum_probs=181.8

Q ss_pred             ccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC----
Q psy10938         57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR----  131 (314)
Q Consensus        57 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~----  131 (314)
                      |+|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.+++.|+++|++.+    
T Consensus        48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence            399999999999999999999999999999999 899999999999999999999999999999999999999988    


Q ss_pred             ----------C--------------------------------------------------------------CCCC--C
Q psy10938        132 ----------P--------------------------------------------------------------LIPG--H  137 (314)
Q Consensus       132 ----------P--------------------------------------------------------------l~~~--~  137 (314)
                                |                                                              .+++  .
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR  207 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence                      1                                                              0110  1


Q ss_pred             ccc---chhhhhh------------------------------------------------hcCCc----CCCcCcc---
Q psy10938        138 PGK---VASVCDV------------------------------------------------SALQP----ADNSTVA---  159 (314)
Q Consensus       138 ~~~---~~~~~~~------------------------------------------------~~~~~----~~~~~~~---  159 (314)
                      +++   .++..+.                                                .+.+.    .++....   
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4aps_A          208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP  287 (491)
T ss_dssp             CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred             CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            111   1111110                                                00000    0000000   


Q ss_pred             ------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHH-----HHHHHHHHH
Q psy10938        160 ------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLV-----AGLVLSSGV  210 (314)
Q Consensus       160 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~  210 (314)
                                              +..+.+....+.......+...++..+.+++.||++||+...     .+..+.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~  367 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS  367 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence                                    112333344555666777788888899999999999876544     566666666


Q ss_pred             HHHHHHhc---------chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938        211 AMALYYVQ---------TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID  281 (314)
Q Consensus       211 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~  281 (314)
                      ++++....         +.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55554432         444555566667777788888889999999999999999999999999999999999998887


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhc
Q psy10938        282 GHCLILICTLAAMLLIAGVFSMFL  305 (314)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~  305 (314)
                      ......+...+.+.+++.++.++.
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          448 KSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             SSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            765667777777777766665554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1.5e-24  Score=187.93  Aligned_cols=263  Identities=13%  Similarity=0.078  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH
Q psy10938         31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (314)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  110 (314)
                      ..++...+...++...+.+.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566677788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHhhcccC---C-------------------------------------------------------
Q psy10938        111 SVAQYYGVFLALRFINGFASR---P-------------------------------------------------------  132 (314)
Q Consensus       111 ~~~~~~~~l~~~r~l~G~~~~---P-------------------------------------------------------  132 (314)
                      .+++|++.+++.|++.|++.+   |                                                       
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999999999999988   1                                                       


Q ss_pred             ------------CCCCCcccchhhhhhhcCCcCCCcCcc---------------------------cccCCCChhHHHHH
Q psy10938        133 ------------LIPGHPGKVASVCDVSALQPADNSTVA---------------------------TCSGEVNPEVFSHT  173 (314)
Q Consensus       133 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~  173 (314)
                                  +++++++++++ ++..+..++..+++.                           +..+.+..+.+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  241 (375)
T 2gfp_A          163 LCAGVTFSMARWMPETRPVDAPR-TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF  241 (375)
T ss_dssp             HHHHHHCCCCCSSCCCSTTTCCC-CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcccCCCCccc-ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                        11111111000 000000000000000                           11344455667777


Q ss_pred             HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH-HHHHHH--HHHH--hcchhHHHHHHHHHHHhhhhhchhheeeeccc
Q psy10938        174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL-SSGVAM--ALYY--VQTSTQNLILSCIFEALTGCCISVVYCIMVDL  248 (314)
Q Consensus       174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      ....++.+++..+.+++.||++++...  +... ...+..  ....  .++.+......++.+++.+...+....+..|.
T Consensus       242 ~~~~~~~~~~~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  319 (375)
T 2gfp_A          242 ILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP  319 (375)
T ss_dssp             HTHHHHHHHHHHHHHTTTTHHHHHHHH--HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            888888889999999999998873322  2222 121111  1222  12344444556667778888889999999999


Q ss_pred             ccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy10938        249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLI  297 (314)
Q Consensus       249 ~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~  297 (314)
                      .| ++|+++.|+.+...++|..++|.+.|.+.+..+....+....+.++
T Consensus       320 ~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  367 (375)
T 2gfp_A          320 FP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL  367 (375)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            98 8999999999999999999999999999887665544444444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.90  E-value=1.1e-22  Score=178.81  Aligned_cols=273  Identities=12%  Similarity=0.051  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh---HHHHhhh
Q psy10938         39 YAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG---IASSVAQ  114 (314)
Q Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~  114 (314)
                      ..........+.+|. +++++|.|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+..++.   ....+++
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~   97 (417)
T 2cfq_A           18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP   97 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445566665 456799999999999999999999999999999999999999998887665421   1112222


Q ss_pred             HHH-HHHHHHHHhhcccC---------------------------------------C----------------------
Q psy10938        115 YYG-VFLALRFINGFASR---------------------------------------P----------------------  132 (314)
Q Consensus       115 ~~~-~l~~~r~l~G~~~~---------------------------------------P----------------------  132 (314)
                      ... .+...+++.|++.+                                       |                      
T Consensus        98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~  177 (417)
T 2cfq_A           98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA  177 (417)
T ss_dssp             HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            211 12334444444332                                       1                      


Q ss_pred             ---------CCCCCcccc-hhhhhhhcCCcCC-C------cCcc---------------------------cccCC---C
Q psy10938        133 ---------LIPGHPGKV-ASVCDVSALQPAD-N------STVA---------------------------TCSGE---V  165 (314)
Q Consensus       133 ---------l~~~~~~~~-~~~~~~~~~~~~~-~------~~~~---------------------------~~~~~---~  165 (314)
                               ++++.++.. .+..+..+.++.. +      +.+.                           ...+.   .
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (417)
T 2cfq_A          178 LILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG  257 (417)
T ss_dssp             TTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred             HHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                     011110000 0000000000000 0      0000                           00110   1


Q ss_pred             ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938        166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (314)
                      ....+....+..+..+++.++.+++.||+|||+.+..+..+.++..+...+.++.+......++.+++.....+..+.+.
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22234455566677888899999999999999998888888777766666555555544444445555555555667899


Q ss_pred             cccccchhhHHHHHHH-HhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc-ccCCCC
Q psy10938        246 VDLFPTNLRVLAAALS-STFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL-PATGKK  311 (314)
Q Consensus       246 ~~~~p~~~r~~~~g~~-~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~  311 (314)
                      .|.+|++.|+++.+.. +...++|+.++|.+.|.+.|..+ ...|.+.+++.+++.++.+.. +|+++.
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~  406 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence            9999999999999995 88888999999999999999877 456667777777776665543 655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=1.1e-19  Score=164.17  Aligned_cols=96  Identities=16%  Similarity=0.088  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhhc-cccccccc------cccchhhHHhHhhHHHHHHhhhhhhhccccc-chhHHHHHHHHHHHHHh
Q psy10938         36 LYAYAAISITVLSFVL-PSAQCDFG------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCG  107 (314)
Q Consensus        36 ~~~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~  107 (314)
                      ..+...+......+.+ +.+.+++|      .+..+.+++.+.+.++..++++++|+++||+ |||+++..+.++..++.
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~   99 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH   99 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3344444443333443 44567888      9999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhh-HHHHHHHHHHHhhcccC
Q psy10938        108 IASSVAQ-YYGVFLALRFINGFASR  131 (314)
Q Consensus       108 ~~~~~~~-~~~~l~~~r~l~G~~~~  131 (314)
                      ++..+++ +++.+++.|++.|++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~g~~~~  124 (524)
T 2xut_A          100 AFLAIFEHSVQGFYTGLFLIALGSG  124 (524)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhcc
Confidence            9999999 99999999999999987

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=3.8e-12  Score=111.98  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=109.5

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQTSTQNLILSCIFEALTGCCISVV  241 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      +..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++.   .+.++.+..++..++.+++.+...+..
T Consensus        59 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~  138 (438)
T 3o7q_A           59 TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA  138 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhH
Confidence            56778889999999999999999999999999999999999999988888   777888888888889999999999999


Q ss_pred             eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH-hhh
Q psy10938        242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI-DGH  283 (314)
Q Consensus       242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~-~~~  283 (314)
                      .+++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..
T Consensus       139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999998 443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=2.9e-12  Score=113.18  Aligned_cols=144  Identities=16%  Similarity=0.130  Sum_probs=123.3

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhhhhhchh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY----VQTSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++..+    .++.+..++..++.+++.+...+.
T Consensus        60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  139 (451)
T 1pw4_A           60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP  139 (451)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred             cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch
Confidence            4556788889999999999999999999999999999999999999999888    888888888888899999999999


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH-HhcccC
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFS-MFLPAT  308 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~  308 (314)
                      ..+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+  ...+++.+++.++..++. .++||+
T Consensus       140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~  210 (451)
T 1pw4_A          140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  210 (451)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999887765  345666666665555443 445654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.41  E-value=4e-12  Score=113.67  Aligned_cols=139  Identities=14%  Similarity=0.013  Sum_probs=120.5

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC  243 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
                      +..+.+...+...++..++.++.|+++|| +|||+++..+..+..++.++..+.++.+..++..++.+++.+...+...+
T Consensus        52 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  131 (491)
T 4aps_A           52 TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVST  131 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            56778888999999999999999999999 89999999999999999998888888888888888889999999999999


Q ss_pred             eecccccchh--hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938        244 IMVDLFPTNL--RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       244 ~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~  303 (314)
                      ++.|.+|++.  |+++.++.+...++|..++|.+.+.+.+..+ ...+++.++..+++.+...
T Consensus       132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988  7888888999999999999999999999877 4556666555555555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.40  E-value=2.7e-13  Score=116.99  Aligned_cols=145  Identities=15%  Similarity=0.002  Sum_probs=123.5

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (314)
                      +..+.+...+...++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+..+...++.+++.+...+....+
T Consensus        33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~  112 (375)
T 2gfp_A           33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTL  112 (375)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56678888999999999999999999999999999999999999999888888888887888888888888899999999


Q ss_pred             ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938        245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG  309 (314)
Q Consensus       245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (314)
                      +.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.++..++..+.. ..+||++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence            9999999999999999999999999999999999998766 455666666655554422 3446654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.30  E-value=2.8e-11  Score=109.06  Aligned_cols=140  Identities=12%  Similarity=0.031  Sum_probs=118.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhchhhe
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQ-TSTQNLILSCIFEALTGCCISVVY  242 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
                      +..+.+...+...++..++.++.|+++||+ |||+.+..+..+..++.++..+.+ +.+..+...++.+++.+...+...
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  131 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS  131 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence            566788888999999999999999999999 999999999999999988888887 777777778888888899999999


Q ss_pred             eeecccccchhhHHHHHH---HHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938        243 CIMVDLFPTNLRVLAAAL---SSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF  304 (314)
Q Consensus       243 ~~~~~~~p~~~r~~~~g~---~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (314)
                      +++.|.+|+++|+++.+.   .+...++|..++|.+.+.+.+..+ ...+++.+++.+++.+...+
T Consensus       132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999776666   888899999999999999998766 45566666665555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.16  E-value=5.8e-10  Score=99.58  Aligned_cols=116  Identities=14%  Similarity=0.026  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------------------hcchhHHHHHHH
Q psy10938        167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY------------------VQTSTQNLILSC  228 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  228 (314)
                      ...++..+...++..+|.++.|+++||+|||+.+.++.++..++.++..+                  .++.+..++.-+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            34566777788999999999999999999999999999998888877663                  456677788889


Q ss_pred             HHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy10938        229 IFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG  282 (314)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~  282 (314)
                      +.|++.+...+....++.|..|++.|++..++.+.....|...++.+.....+.
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            999999999999999999999999999999999999999998888887666543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.77  E-value=2.6e-08  Score=87.16  Aligned_cols=134  Identities=14%  Similarity=-0.005  Sum_probs=87.3

Q ss_pred             cccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCCCCcc
Q psy10938         60 MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPG  139 (314)
Q Consensus        60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~~~~~  139 (314)
                      .+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+   -....
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~  332 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP---FLLVG  332 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH---HHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHHH
Confidence            345567888888889999999999999999999999999998888887777777888777777666666543   00000


Q ss_pred             cchhhhhhhcCCcCCCcCcccccCCCChhHHH-HHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHH
Q psy10938        140 KVASVCDVSALQPADNSTVATCSGEVNPEVFS-HTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSS  208 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  208 (314)
                      ......+....+.            .....+. ......++..+++.+.|++.|+.|....+.....+..
T Consensus       333 ~~~~~~~~~p~~~------------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l  390 (417)
T 2cfq_A          333 CFKYITSQFEVRF------------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL  390 (417)
T ss_dssp             HHHHHHHHSCHHH------------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHH------------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence            0111111111100            1111222 2344557888899999999998886655544443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 82  FWGCLADTQGRKITLIGALLVDGL----CGIASSVAQYYGVFLALRFINGFASRPLIPGH 137
             G ++D    ++ L   L++        G          V   L F+ G+      P  
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 PGKVASVC 145
              +    
Sbjct: 138 GRTMVHWW 145

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 18/134 (13%), Positives = 38/134 (28%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
             +FG   + Y  I      F          ++ SD G + AA  L  +     +G L+D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVS 148
             G +  L+  +    +      +  +  +      +        +       A   +  
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 149 ALQPADNSTVATCS 162
             + +  S      
Sbjct: 129 IEKVSRRSNFEFGR 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.37
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.3e-29  Score=218.23  Aligned_cols=281  Identities=12%  Similarity=0.137  Sum_probs=203.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938         23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  102 (314)
                      ++++|.++..++++++..+.++..++.+.|.++ |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++..+.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            467888888888899999999988898889876 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhh----HHHHHHHHHHHhhcccC--------------C--------------------------------
Q psy10938        103 DGLCGIASSVAQ----YYGVFLALRFINGFASR--------------P--------------------------------  132 (314)
Q Consensus       103 ~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~--------------P--------------------------------  132 (314)
                      .+++.+++++++    +++.+++.|++.|++.+              |                                
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            999999888764    67789999999999887              1                                


Q ss_pred             -------------------------CCCCCcc--------cchhhhhhhcCCcCCCc------------Ccc--------
Q psy10938        133 -------------------------LIPGHPG--------KVASVCDVSALQPADNS------------TVA--------  159 (314)
Q Consensus       133 -------------------------l~~~~~~--------~~~~~~~~~~~~~~~~~------------~~~--------  159 (314)
                                               +++.+++        .+....+..+.+.+++.            .+.        
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  258 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHh
Confidence                                     1110000        00000000000000000            000        


Q ss_pred             -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHh
Q psy10938        160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSS---GVAMALYYV  217 (314)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~---~~~~~~~~~  217 (314)
                                         +..+.+..+.+.......+..+++.++.|++.||++|++..........   ++.......
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (447)
T d1pw4a_         259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  338 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc
Confidence                               3445677788888899999999999999999999987654333322222   222222221


Q ss_pred             --cchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhh-HHHHHHHHH
Q psy10938        218 --QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLIDGHC-LILICTLAA  293 (314)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~~~~-~~~~~~~~~  293 (314)
                        .+.+......++.+++.....+....+..|.+|++.|+++.|+.+.+.++ |...+|.+.|.+.|..| ...+++.++
T Consensus       339 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~  418 (447)
T d1pw4a_         339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  418 (447)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence              23444455556667777777888888999999999999999999999887 45678999999999987 555666666


Q ss_pred             HHHHHHHHHHh
Q psy10938        294 MLLIAGVFSMF  304 (314)
Q Consensus       294 ~~~~~~~~~~~  304 (314)
                      +.+++.++..+
T Consensus       419 ~~~~~~~~~~~  429 (447)
T d1pw4a_         419 GSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.4e-26  Score=198.12  Aligned_cols=279  Identities=12%  Similarity=0.056  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHH
Q psy10938         31 IFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (314)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  109 (314)
                      +.+...+++..+......+.+|. +.+++|+|+.++|++.+++.++..++++++|+++||+|||++++.+..+..++..+
T Consensus        10 ~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   89 (417)
T d1pv7a_          10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34444555666666677777776 56779999999999999999999999999999999999999999999999998888


Q ss_pred             HHhhhHHHHH----HHHHHHhhcccC----C-------------------------------------------------
Q psy10938        110 SSVAQYYGVF----LALRFINGFASR----P-------------------------------------------------  132 (314)
Q Consensus       110 ~~~~~~~~~l----~~~r~l~G~~~~----P-------------------------------------------------  132 (314)
                      ..+.++....    ++.+.+.+.+.+    +                                                 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  169 (417)
T d1pv7a_          90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV  169 (417)
T ss_dssp             HHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccccc
Confidence            8877665543    344444444433    0                                                 


Q ss_pred             ------------------CCCCCcccchhhhhhhcCCcCCC-------cCcc----------------------------
Q psy10938        133 ------------------LIPGHPGKVASVCDVSALQPADN-------STVA----------------------------  159 (314)
Q Consensus       133 ------------------l~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------------------------  159 (314)
                                        +++..++.+.+..+..+..+...       ....                            
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (417)
T d1pv7a_         170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS  249 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccc
Confidence                              11111111111101000000000       0000                            


Q ss_pred             --cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhh
Q psy10938        160 --TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCC  237 (314)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (314)
                        ...+..............++..++....+++.||.++|+.+..+..+..++.+.+.+.++.+......++.+++.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence              111122334455566777888889999999999999999999999999999999988888888888888888888999


Q ss_pred             chhheeeecccccchhhHHHHHHHHh-hhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc-ccCC
Q psy10938        238 ISVVYCIMVDLFPTNLRVLAAALSST-FGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL-PATG  309 (314)
Q Consensus       238 ~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~  309 (314)
                      .+...++..|.+|++.|+++.|+... ...+|..++|.+.|.+.|..| ...+++.+++.++..++..+. ++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999998654 556999999999999999988 566777777777766665544 4443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3.6e-12  Score=110.04  Aligned_cols=139  Identities=17%  Similarity=0.133  Sum_probs=115.0

Q ss_pred             CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHhhhhhchh
Q psy10938        165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLILSCIFEALTGCCISV  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  240 (314)
                      +..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.+    +.+..+...++.+++.+...+.
T Consensus        57 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  136 (447)
T d1pw4a_          57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP  136 (447)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhH
Confidence            667888999999999999999999999999999999999998888887776543    5556677777888888888999


Q ss_pred             heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH
Q psy10938        241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFSM  303 (314)
Q Consensus       241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~  303 (314)
                      ...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+  ...+++.+.+.++..++.+
T Consensus       137 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999988777643  3445555555555444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=4.8e-10  Score=94.75  Aligned_cols=154  Identities=14%  Similarity=-0.007  Sum_probs=109.7

Q ss_pred             HHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q psy10938         46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (314)
Q Consensus        46 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  125 (314)
                      ......+...++.+.+....+...+...++..++..+.+++.||+|||+.+..+..+..++.+...+.++.+.+++..++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  321 (417)
T d1pv7a_         242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL  321 (417)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             cccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHH
Confidence            33344555566667777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCCCcccchhhhhhhcCCcCCCcCcccccCCCChhHHHH-HHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHH
Q psy10938        126 NGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSH-TLIIGLACIPSSLAMPLLVHKMGAKWFLVAGL  204 (314)
Q Consensus       126 ~G~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  204 (314)
                      .|++.+   -..+....-..+..+.+.            .....+.. .....++..+++.+.|++.|++|.+.......
T Consensus       322 ~g~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         322 HMFEVP---FLLVGCFKYITSQFEVRF------------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHSCGGG------------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            998876   100111111112211111            11222222 23345778889999999999999888766655


Q ss_pred             HHHHHHHHHH
Q psy10938        205 VLSSGVAMAL  214 (314)
Q Consensus       205 ~~~~~~~~~~  214 (314)
                      .+..+..++.
T Consensus       387 ~~~~~~~~~~  396 (417)
T d1pv7a_         387 LVALGFTLIS  396 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5554444443