Psyllid ID: psy10990
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | 2.2.26 [Sep-21-2011] | |||||||
| Q9JHW0 | 277 | Proteasome subunit beta t | yes | N/A | 0.512 | 0.898 | 0.558 | 2e-87 | |
| Q2TBP0 | 277 | Proteasome subunit beta t | yes | N/A | 0.512 | 0.898 | 0.559 | 4e-87 | |
| Q99436 | 277 | Proteasome subunit beta t | yes | N/A | 0.512 | 0.898 | 0.554 | 6e-87 | |
| A1XQU1 | 277 | Proteasome subunit beta t | yes | N/A | 0.512 | 0.898 | 0.558 | 6e-87 | |
| P70195 | 277 | Proteasome subunit beta t | yes | N/A | 0.512 | 0.898 | 0.554 | 7e-87 | |
| Q7DLS1 | 274 | Proteasome subunit beta t | yes | N/A | 0.514 | 0.912 | 0.521 | 2e-73 | |
| O23710 | 273 | Proteasome subunit beta t | yes | N/A | 0.510 | 0.908 | 0.525 | 3e-73 | |
| P25043 | 261 | Proteasome subunit beta t | yes | N/A | 0.508 | 0.946 | 0.467 | 7e-67 | |
| P40306 | 273 | Proteasome subunit beta t | no | N/A | 0.497 | 0.886 | 0.465 | 3e-66 | |
| O35955 | 273 | Proteasome subunit beta t | no | N/A | 0.497 | 0.886 | 0.457 | 6e-65 |
| >sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/283 (55%), Positives = 206/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + P+ +E E+++ T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLELEVLEEIVQT 273
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Rattus norvegicus (taxid: 10116) EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1 |
| >sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 160/286 (55%), Positives = 206/286 (72%), Gaps = 37/286 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALL----STQRIPIVVESEQVIHT 483
PY + N KG + G YR ++GT A+L +T I ++ E+ Q + T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTNAVLTEKVTTLEIEVLEETVQTMDT 276
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 204/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A +GY P RKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + P+ +E E+ + T
Sbjct: 231 PYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEETVQT 273
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the trypsin-like activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/283 (55%), Positives = 205/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P M EEE K+LV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + + +E E+ + T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTTAVLTEKVTALDIEVLEETVQT 273
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 205/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
P+ + N KG + G YR ++GTTA+L+ + P+ +E E+ + T
Sbjct: 231 PFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLEIEVLEETVQT 273
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the trypsin-like activity of the proteasome. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 183/282 (64%), Gaps = 32/282 (11%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC+KIHYMA N
Sbjct: 20 KRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TD+++SQL L + TG+ RV+TA LL++ LF YQ
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GHVSAALVLGGVD TG HL IYPHGS+DT+PF TMGSGS
Sbjct: 131 --------------------GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFE+ +K +T +E KLV +AI +G+FNDLGSGSN+D+CVI K EYLR Y
Sbjct: 171 LAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYME 230
Query: 446 ANVKGK-KDGDYRFKRGTTALLSTQRIPIVVESEQVIHTGTE 486
N + Y F + T LL+ +I ++E +++ E
Sbjct: 231 PNPRTYVSSKGYSFTKKTEVLLT--KITPLLERVEIVEVAGE 270
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/280 (52%), Positives = 182/280 (65%), Gaps = 32/280 (11%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC+KIHYMA N
Sbjct: 20 KRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TD+++SQL L + TG+ RVITA LL++ LF YQ
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GHVSAALVLGGVD TG HL IYPHGS+DT+PF TMGSGS
Sbjct: 131 --------------------GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFE+ +K +T +E KLV ++I +G+FNDLGSGSN+D+CVI K EYLR Y
Sbjct: 171 LAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYME 230
Query: 446 ANVKGK-KDGDYRFKRGTTALLSTQRIPIVVESEQVIHTG 484
N + Y F + T LL+ +I ++E ++ G
Sbjct: 231 PNPRTYVSSKGYSFTKKTEVLLT--KITPLLERVEITEVG 268
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/278 (46%), Positives = 179/278 (64%), Gaps = 31/278 (11%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
+Q+N FLA ++ P A TGTTIVG F +GVV+ ADTR+T IVA+KNC K+H ++
Sbjct: 9 YQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP 68
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
I+C GAGTAADT+ T LI S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 69 KIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-------- 120
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSG
Sbjct: 121 ---------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK-KNGVEYLRPY 443
SLAAM+V ES+WK ++T+EE KL DAI AG++NDLGSGSN+D+CV++ EYLR Y
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIV-VESEQV 480
NV+ +K Y+F RGTTA+L + I ++ EQV
Sbjct: 220 LTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEEQV 257
|
The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 171/273 (62%), Gaps = 31/273 (11%)
Query: 206 QKNAFLAS--KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
Q+NA L G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A
Sbjct: 18 QRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AAD ++TT ++AS++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
GHV A+L++GGVD TG L+ ++PHGS +PF +GS
Sbjct: 131 ----------------------GHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA++V E ++PNMT E + L+ +A+ AG+ DLGSG N+D CVI K G + LR
Sbjct: 169 GQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVE 476
K+ G Y F GTTA+L+ P+ +E
Sbjct: 229 SSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLE 261
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
| >sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/273 (45%), Positives = 171/273 (62%), Gaps = 31/273 (11%)
Query: 206 QKNAFLAS--KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
Q+NA L G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A
Sbjct: 18 QRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AADT++TT + AS++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
GHV A+LV+GGVD G L+ ++PHGS +PF +GS
Sbjct: 131 ----------------------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA+++ E ++PNMT E ++L+ +AI AG+ +DLGSG N+D CVI G + R
Sbjct: 169 GQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRAL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVE 476
++ G YRF GTT +L+ + P+ +E
Sbjct: 229 STPTEPVQRAGRYRFAPGTTPVLTREVRPLTLE 261
|
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides. Plays a role in determining the T-cell repertoire for an antiviral T-cell response. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 5 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| 405962686 | 275 | Proteasome subunit beta type-7 [Crassost | 0.504 | 0.890 | 0.608 | 4e-94 | |
| 307095116 | 277 | proteasome beta 2 subunit [Triatoma mato | 0.506 | 0.888 | 0.607 | 8e-94 | |
| 357604314 | 274 | proteasome subunit beta 7 [Danaus plexip | 0.506 | 0.897 | 0.619 | 2e-92 | |
| 389608763 | 281 | proteasome beta2 subunit [Papilio xuthus | 0.506 | 0.875 | 0.612 | 1e-91 | |
| 114053073 | 283 | proteasome subunit beta 7 [Bombyx mori] | 0.502 | 0.862 | 0.616 | 4e-91 | |
| 442749373 | 278 | Putative 20s proteasome regulatory subun | 0.518 | 0.906 | 0.604 | 7e-91 | |
| 156543654 | 277 | PREDICTED: proteasome subunit beta type- | 0.506 | 0.888 | 0.585 | 1e-90 | |
| 195454741 | 272 | GK10550 [Drosophila willistoni] gi|19417 | 0.502 | 0.897 | 0.594 | 1e-90 | |
| 242000314 | 278 | proteasome beta2 subunit, putative [Ixod | 0.518 | 0.906 | 0.597 | 3e-90 | |
| 211939903 | 281 | proteasome subunit beta 7 [Helicoverpa a | 0.526 | 0.911 | 0.591 | 5e-90 |
| >gi|405962686|gb|EKC28337.1| Proteasome subunit beta type-7 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/276 (60%), Positives = 210/276 (76%), Gaps = 31/276 (11%)
Query: 207 KNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNI 266
+N F KG PTA KTGTTIVG ++ DGVVLGADTRAT+DT+VA+KNC KIHY++ NI
Sbjct: 21 RNQFFEQKGIKAPTAYKTGTTIVGLVYKDGVVLGADTRATEDTVVADKNCSKIHYISDNI 80
Query: 267 YCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRD 326
YCCGAGTAADT++TT +I+SQLEL +LNTG+ PRV TANRLL+QMLFRYQ
Sbjct: 81 YCCGAGTAADTEMTTQMISSQLELHRLNTGRTPRVCTANRLLKQMLFRYQ---------- 130
Query: 327 AIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSL 386
GH+SAALVLGGVD TG HL+++YPHGS+D +P+ TMGSGSL
Sbjct: 131 -------------------GHISAALVLGGVDSTGPHLYSVYPHGSTDKLPYVTMGSGSL 171
Query: 387 AAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIA 446
AAM+VFE +KPNM +EE KKLVRDAIAAG+FNDLGSGSN+D+CVI K+ V+Y+RP++ A
Sbjct: 172 AAMAVFERGFKPNMEKEEAKKLVRDAIAAGIFNDLGSGSNVDVCVITKDKVDYIRPFDEA 231
Query: 447 NVKGKKDGDYRFKRGTTALLSTQ--RIPIVVESEQV 480
N+KG++ G YR+K+GTTA+L T+ +IP V + V
Sbjct: 232 NLKGQRQGSYRYKKGTTAVLKTEVKKIPFEVVKKTV 267
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|307095116|gb|ADN29864.1| proteasome beta 2 subunit [Triatoma matogrossensis] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 167/275 (60%), Positives = 210/275 (76%), Gaps = 29/275 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++NA L KG++ P ARKTGTTIVG IF DGV+LGADTRAT+DTIVA+KNC KIHY+AKN
Sbjct: 20 KRNALLLEKGFTAPKARKTGTTIVGIIFKDGVILGADTRATEDTIVADKNCSKIHYLAKN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
+YCCGAGTAADT++TT IASQLEL +LNTG++ V TANR+L+Q+LFRYQ
Sbjct: 80 MYCCGAGTAADTEMTTLTIASQLELHRLNTGRVVPVRTANRMLKQLLFRYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
G++ AALVLGG+D+ G HL+ I+PHGS+D P+ +MGSGS
Sbjct: 131 --------------------GYIGAALVLGGIDNDGPHLYTIHPHGSTDNPPYTSMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSV ES W P+M EEE K+LVR+AI AG+FNDLGSGS+ D+C+IKKN VEY+RPY++
Sbjct: 171 LAAMSVLESQWHPDMEEEEAKQLVRNAIIAGIFNDLGSGSSCDICIIKKNAVEYIRPYDV 230
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQV 480
AN+KG K G Y+F+RG TA+LS + IP+ VESE+V
Sbjct: 231 ANIKGVKQGIYKFRRGATAVLSHRVIPLEVESEEV 265
|
Source: Triatoma matogrossensis Species: Triatoma matogrossensis Genus: Triatoma Family: Reduviidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357604314|gb|EHJ64129.1| proteasome subunit beta 7 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/276 (61%), Positives = 207/276 (75%), Gaps = 30/276 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
Q+NAFL+ KG+ P A KTGTTIVG I+ADGV+LGADTRAT++T+V++KNCQKIHY+A N
Sbjct: 20 QRNAFLSQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLAGN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
+YCCGAGTAADT++TT +ASQLEL +L+TG+ V TA LL++MLFRYQ
Sbjct: 80 MYCCGAGTAADTEMTTQTVASQLELQRLHTGRTVPVETAATLLKRMLFRYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+ AALVLGGVD TG H++ IYPHGS D +P+ TMGSGS
Sbjct: 131 --------------------GHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYE 444
LAAM+VFES WKPNM+EEE KKLVRDAIAAG+FNDLGSGSN+DLCVI+ +G +YLR YE
Sbjct: 171 LAAMAVFESRWKPNMSEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRSSGPAQYLRTYE 230
Query: 445 IANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQV 480
ANVKGKK G YR+ GTTA+L + IP+ VES V
Sbjct: 231 EANVKGKKQGSYRYPLGTTAVLRQRVIPLEVESVAV 266
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389608763|dbj|BAM17993.1| proteasome beta2 subunit [Papilio xuthus] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/276 (61%), Positives = 208/276 (75%), Gaps = 30/276 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
Q+NAFLA KG+ P A KTGTTIVG I+ADGV+LGADTRAT++T+V++KNCQKIHY+A N
Sbjct: 20 QRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
+YCCGAGTAADT++TT +ASQLEL +L+TG+ V TA+ LL++MLFRYQ
Sbjct: 80 MYCCGAGTAADTEMTTQTVASQLELQRLHTGRTVPVETASTLLKRMLFRYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
G++ AALVLGGVD TG H++ IYPHGS D +P+ TMGSGS
Sbjct: 131 --------------------GYIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYE 444
LAAM+VFES WKPN++EEE KKLVRDAIAAG+FNDLGSGSN+DLCVI+ +G +YLR YE
Sbjct: 171 LAAMAVFESGWKPNLSEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNSGPAQYLRTYE 230
Query: 445 IANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQV 480
AN+KGKK G YR+ GTTA+L + IP+ VES V
Sbjct: 231 EANIKGKKQGSYRYPIGTTAVLKQRVIPLEVESVAV 266
|
Source: Papilio xuthus Species: Papilio xuthus Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|114053073|ref|NP_001040536.1| proteasome subunit beta 7 [Bombyx mori] gi|95102982|gb|ABF51432.1| proteasome subunit beta 7 [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/274 (61%), Positives = 204/274 (74%), Gaps = 30/274 (10%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
FQ+NAFLA KG+ P A KTGTTIVG I+ADGV+LGADTRAT++T+V++KNCQKIHY+A
Sbjct: 19 FQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLAS 78
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
N+YCCGAGTAADT++TT +ASQLEL +L+TG+ V TA LL++MLFRYQ
Sbjct: 79 NMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQ-------- 130
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ AALVLGGVD TG H++ IYPHGS D +P+ TMGSG
Sbjct: 131 ---------------------GHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSG 169
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443
SLAAM+VFE+ WK +M EEE KKLVRDAIAAG+FNDLGSGSN+DLCVI+ G +YLR Y
Sbjct: 170 SLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTY 229
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES 477
E ANVKGKK G YR+ GTTA+L + IP+ VES
Sbjct: 230 EEANVKGKKQGSYRYALGTTAVLKQRVIPLEVES 263
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442749373|gb|JAA66846.1| Putative 20s proteasome regulatory subunit beta type [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 170/281 (60%), Positives = 207/281 (73%), Gaps = 29/281 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++NAFLASKG + P A KTGTTI G IF DGV+LGADTRAT +I+A+KNC KIHYMA N
Sbjct: 21 RRNAFLASKGLALPKATKTGTTIAGIIFKDGVILGADTRATSGSIIADKNCAKIHYMAPN 80
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TT++I+SQLEL +L TG+ V TANR+L+QMLFRYQ
Sbjct: 81 IYCCGAGTAADTEKTTNMISSQLELHRLATGRTVPVCTANRMLKQMLFRYQ--------- 131
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+SAALVLGGVD+TG L I+PHGS+D +P+ TMGSGS
Sbjct: 132 --------------------GHISAALVLGGVDNTGGVLCCIHPHGSTDRLPYVTMGSGS 171
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAM+VFE +WKP+MT EE KK+VRDAIAAG+FNDLGSGSNID+CVI + G EY+RPY+
Sbjct: 172 LAAMAVFERDWKPDMTLEEGKKVVRDAIAAGIFNDLGSGSNIDICVITREGKEYIRPYDE 231
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQVIHTGTE 486
AN KG++ Y+FK+GTTA+LS+ +PI VE V H E
Sbjct: 232 ANKKGQRQLSYKFKKGTTAVLSSNVVPIEVEETTVRHLDAE 272
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156543654|ref|XP_001607442.1| PREDICTED: proteasome subunit beta type-7 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/275 (58%), Positives = 210/275 (76%), Gaps = 29/275 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
Q+NA LA KGY P A+KTGTTIVG I+ DGV+LGADTRAT+ +IVA+K +KIHY+AKN
Sbjct: 20 QRNALLAKKGYPAPKAQKTGTTIVGIIYKDGVILGADTRATEGSIVADKKSEKIHYLAKN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
+YCCGAGTAADT++TT++I+SQLEL +LNTG+I V+TA++LL+Q+LFR+Q
Sbjct: 80 MYCCGAGTAADTEMTTEMISSQLELHRLNTGRIVPVVTASKLLKQLLFRHQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+ AAL++GGVD++G HL+ IYPHGS DT+ + TMGSGS
Sbjct: 131 --------------------GHIGAALIVGGVDNSGPHLYCIYPHGSCDTLQYTTMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFES WKP M+EEE K+LV DAI AGVFNDLGSG+++D+CVI+K +Y+RPYE+
Sbjct: 171 LAAMSVFESRWKPGMSEEEGKELVADAIRAGVFNDLGSGNSVDVCVIRKGSTDYIRPYEL 230
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQV 480
+ VKG++ G YR+KRGTTA+L+ P++VE E V
Sbjct: 231 SCVKGERQGSYRYKRGTTAVLTKNIRPVIVEDEAV 265
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195454741|ref|XP_002074381.1| GK10550 [Drosophila willistoni] gi|194170466|gb|EDW85367.1| GK10550 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 207/281 (73%), Gaps = 37/281 (13%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++N L +G+ PT KTGTTIVG I+ DGV+LGADTRAT+ IV++KNC KIHY+A+N
Sbjct: 20 KRNLILLQEGFKPPTMTKTGTTIVGIIYKDGVILGADTRATEGPIVSDKNCSKIHYLAQN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT++TTDLI+SQLEL +LNT + RV+ AN +L+QMLFRYQ
Sbjct: 80 IYCCGAGTAADTEMTTDLISSQLELHRLNTNRQVRVVAANMMLKQMLFRYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+SAALVLGGVD TG HL++I+PHGSSD +P+ TMGSGS
Sbjct: 131 --------------------GHISAALVLGGVDKTGPHLYSIHPHGSSDKLPYATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFES WKPNM+EE+ K LVRDAIA+G+FNDLGSGSN+DLCVI++N VEYLR +E+
Sbjct: 171 LAAMSVFESRWKPNMSEEDGKLLVRDAIASGIFNDLGSGSNVDLCVIRENSVEYLRNFEL 230
Query: 446 ANVKGKKDGDYRFKRGTTALLS--------TQRIPIVVESE 478
AN KG++ DYRFK GTT++L T+R+ VV E
Sbjct: 231 ANKKGERKLDYRFKHGTTSVLHTTIKDFQITERVHAVVPME 271
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242000314|ref|XP_002434800.1| proteasome beta2 subunit, putative [Ixodes scapularis] gi|215498130|gb|EEC07624.1| proteasome beta2 subunit, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/281 (59%), Positives = 208/281 (74%), Gaps = 29/281 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++NAFLASKG + P A KTGTTIVG IF DGV+LGADTRAT +I+A+KNC KIHYMA N
Sbjct: 21 RRNAFLASKGLALPKATKTGTTIVGIIFKDGVILGADTRATSGSIIADKNCAKIHYMAPN 80
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TT++I+SQLEL +L TG+ V TANR+L+QMLFRYQ
Sbjct: 81 IYCCGAGTAADTEKTTNMISSQLELHRLATGRTVPVCTANRMLKQMLFRYQ--------- 131
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+SAALVLGGVD+TG L I+PHGS+D +P+ TMGSGS
Sbjct: 132 --------------------GHISAALVLGGVDNTGGVLCCIHPHGSTDRLPYVTMGSGS 171
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAM+VFE +WKP+MT EE KK+VR+AIAAG+FNDLGSGSN+D+CVI + G +Y+RPY+
Sbjct: 172 LAAMAVFERDWKPDMTLEEGKKVVRNAIAAGIFNDLGSGSNVDICVITREGKDYIRPYDE 231
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIPIVVESEQVIHTGTE 486
AN KG++ Y+FK+GTTA+LS+ +PI VE V H E
Sbjct: 232 ANKKGQRQLSYKFKKGTTAILSSNVVPIEVEETTVRHLDAE 272
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|211939903|gb|ACJ13432.1| proteasome subunit beta 7 [Helicoverpa armigera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/291 (59%), Positives = 211/291 (72%), Gaps = 35/291 (12%)
Query: 193 SDLIAVTVSSIGF-----QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATD 247
+ ++ V + GF Q+NAFLA+KG+ PTA KTGTTIVG IFADGV+LGADTRAT+
Sbjct: 2 ASILVPEVPAPGFSFENCQRNAFLANKGFPAPTATKTGTTIVGIIFADGVILGADTRATE 61
Query: 248 DTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRL 307
+T+V++KNCQKIHY+A N+YCCGAGTAADT++TT +ASQLEL +L+TG+ V TA L
Sbjct: 62 NTVVSDKNCQKIHYLAGNMYCCGAGTAADTEMTTQTVASQLELQRLHTGRTVPVETAATL 121
Query: 308 LRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNI 367
L++MLFRYQ G++ AALVLGGVD TG H++ I
Sbjct: 122 LKRMLFRYQ-----------------------------GYIGAALVLGGVDRTGPHIYCI 152
Query: 368 YPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNI 427
YPHGS D +P+ TMGSGSLAAM+VFE+ WKPNM EEE KKLVRDAIAAG+FNDLGSGSN+
Sbjct: 153 YPHGSVDKLPYATMGSGSLAAMAVFEAGWKPNMNEEEGKKLVRDAIAAGIFNDLGSGSNV 212
Query: 428 DLCVIKKNG-VEYLRPYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES 477
DLCVI G +YLR YE ANVKG+K G YR+ GTTA+L + IP+ V S
Sbjct: 213 DLCVICGTGPAQYLRTYEEANVKGRKQGSYRYALGTTAVLKQRVIPLEVTS 263
|
Source: Helicoverpa armigera Species: Helicoverpa armigera Genus: Helicoverpa Family: Noctuidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| FB|FBgn0023174 | 272 | Prosbeta2 "Proteasome beta2 su | 0.279 | 0.5 | 0.671 | 4e-85 | |
| UNIPROTKB|Q7ZT63 | 277 | cpsmb7 "Proteasome subunit bet | 0.283 | 0.498 | 0.598 | 1.7e-84 | |
| UNIPROTKB|F1MBI1 | 277 | PSMB7 "Proteasome subunit beta | 0.283 | 0.498 | 0.597 | 1.1e-82 | |
| RGD|621093 | 277 | Psmb7 "proteasome (prosome, ma | 0.283 | 0.498 | 0.604 | 1.7e-82 | |
| UNIPROTKB|E2RPC6 | 284 | PSMB7 "Uncharacterized protein | 0.283 | 0.485 | 0.604 | 3.6e-82 | |
| UNIPROTKB|Q2TBP0 | 277 | PSMB7 "Proteasome subunit beta | 0.283 | 0.498 | 0.589 | 3.6e-82 | |
| UNIPROTKB|A1XQU1 | 277 | PSMB7 "Proteasome subunit beta | 0.283 | 0.498 | 0.589 | 3.6e-82 | |
| UNIPROTKB|Q99436 | 277 | PSMB7 "Proteasome subunit beta | 0.283 | 0.498 | 0.604 | 5.8e-82 | |
| MGI|MGI:107637 | 277 | Psmb7 "proteasome (prosome, ma | 0.283 | 0.498 | 0.597 | 7.4e-82 | |
| ZFIN|ZDB-GENE-001208-4 | 286 | psmb7 "proteasome (prosome, ma | 0.283 | 0.482 | 0.589 | 4e-81 |
| FB|FBgn0023174 Prosbeta2 "Proteasome beta2 subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
Identities = 92/137 (67%), Positives = 111/137 (81%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GH+SAALVLGGVD TG H+++I+PHGSSD +P+ TMGSGSLAAM+VFES WKP+++EEE
Sbjct: 131 GHISAALVLGGVDKTGPHIYSIHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEG 190
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLVRDA GVFNDLGSGSNIDLCVI+K VEYLR YE+AN KGK+ DYRFK GT+ +
Sbjct: 191 KKLVRDADPTGVFNDLGSGSNIDLCVIRKGSVEYLRNYELANKKGKRQLDYRFKTGTSTV 250
Query: 466 LSTQ-RIPIVVESEQVI 481
L T + +V E Q +
Sbjct: 251 LHTNIKDLLVTERVQAV 267
|
|
| UNIPROTKB|Q7ZT63 cpsmb7 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 85/142 (59%), Positives = 115/142 (80%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM++FE +KP+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAIFEDKYKPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K+LVRDAIAAG++NDLGSGSNID+CVI KN ++++RPY++AN KG++ G Y+ +RGTTA+
Sbjct: 195 KQLVRDAIAAGIYNDLGSGSNIDICVISKNKLDFIRPYDVANRKGERYGRYKCERGTTAV 254
Query: 466 LSTQ----RIPIVVESEQVIHT 483
L+ I +V E+ Q + T
Sbjct: 255 LTENVAHLEIEVVDETVQTMDT 276
|
|
| UNIPROTKB|F1MBI1 PSMB7 "Proteasome subunit beta type" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 83/139 (59%), Positives = 111/139 (79%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LRPY + N KG + G YR ++GTTA+
Sbjct: 195 KKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + + +E E+ + T
Sbjct: 255 LTEKVTTLEIEVLEETVQT 273
|
|
| RGD|621093 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 84/139 (60%), Positives = 113/139 (81%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LRPY + N KG + G YR ++GTTA+
Sbjct: 195 KKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + P+ +E E+++ T
Sbjct: 255 LTEKVTPLELEVLEEIVQT 273
|
|
| UNIPROTKB|E2RPC6 PSMB7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 84/139 (60%), Positives = 111/139 (79%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 142 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 201
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLV +AIAAGVFNDLGSGSNIDLCVI K+ +++LRPY + N KG + G YR ++GTTA+
Sbjct: 202 KKLVSEAIAAGVFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAV 261
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + + +E E+ + T
Sbjct: 262 LTEKVTTLEIEVLEETVQT 280
|
|
| UNIPROTKB|Q2TBP0 PSMB7 "Proteasome subunit beta type-7" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 82/139 (58%), Positives = 110/139 (79%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LRPY + N KG + G YR ++GT A+
Sbjct: 195 KKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTNAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + + +E E+ + T
Sbjct: 255 LTEKVTTLEIEVLEETVQT 273
|
|
| UNIPROTKB|A1XQU1 PSMB7 "Proteasome subunit beta type-7" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 82/139 (58%), Positives = 110/139 (79%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K+LV +AIAAG+FNDLGSGSNIDLCVI K+ +++LRPY + N KG + G YR ++GTTA+
Sbjct: 195 KQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + + +E E+ + T
Sbjct: 255 LTEKVTALDIEVLEETVQT 273
|
|
| UNIPROTKB|Q99436 PSMB7 "Proteasome subunit beta type-7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 84/139 (60%), Positives = 111/139 (79%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LRPY + N KG + G YR ++GTTA+
Sbjct: 195 KNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + P+ +E E+ + T
Sbjct: 255 LTEKITPLEIEVLEETVQT 273
|
|
| MGI|MGI:107637 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 83/139 (59%), Positives = 112/139 (80%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 135 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LRP+ + N KG + G YR ++GTTA+
Sbjct: 195 KKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAV 254
Query: 466 LSTQRIPIVVES-EQVIHT 483
L+ + P+ +E E+ + T
Sbjct: 255 LTEKVTPLEIEVLEETVQT 273
|
|
| ZFIN|ZDB-GENE-001208-4 psmb7 "proteasome (prosome, macropain) subunit, beta type, 7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 89/151 (58%), Positives = 112/151 (74%)
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EE+
Sbjct: 135 GYIGAALVLGGVDCTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDRYRPDMEEEDA 194
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD---------GDY 456
K LVRDAIAAG+FNDLGSGSNID+CVI K V+YLRP++IAN KG ++ G Y
Sbjct: 195 KSLVRDAIAAGIFNDLGSGSNIDVCVITKGKVDYLRPHDIANKKGVREDKLDGRPVTGSY 254
Query: 457 RFKRGTTALLSTQRIPI----VVESEQVIHT 483
R+K GTT +LS P+ V ES Q + T
Sbjct: 255 RYKHGTTGVLSKAVTPLNLDMVEESVQTMDT 285
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54QR2 | PSB7_DICDI | 3, ., 4, ., 2, 5, ., 1 | 0.5149 | 0.4917 | 0.8984 | yes | N/A |
| Q9JHW0 | PSB7_RAT | 3, ., 4, ., 2, 5, ., 1 | 0.5583 | 0.5123 | 0.8989 | yes | N/A |
| A1XQU1 | PSB7_PIG | 3, ., 4, ., 2, 5, ., 1 | 0.5583 | 0.5123 | 0.8989 | yes | N/A |
| Q2TBP0 | PSB7_BOVIN | 3, ., 4, ., 2, 5, ., 1 | 0.5594 | 0.5123 | 0.8989 | yes | N/A |
| Q7DLS1 | PSB7B_ARATH | 3, ., 4, ., 2, 5, ., 1 | 0.5212 | 0.5144 | 0.9124 | yes | N/A |
| O23710 | PSB7A_ARATH | 3, ., 4, ., 2, 5, ., 1 | 0.525 | 0.5102 | 0.9084 | yes | N/A |
| P70195 | PSB7_MOUSE | 3, ., 4, ., 2, 5, ., 1 | 0.5547 | 0.5123 | 0.8989 | yes | N/A |
| Q99436 | PSB7_HUMAN | 3, ., 4, ., 2, 5, ., 1 | 0.5547 | 0.5123 | 0.8989 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.25.1 | 0.824 |
| 3rd Layer | 3.4.25 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 486 | |||
| cd03763 | 189 | cd03763, proteasome_beta_type_7, proteasome beta t | 1e-121 | |
| cd01912 | 189 | cd01912, proteasome_beta, proteasome beta subunit | 3e-71 | |
| cd01906 | 182 | cd01906, proteasome_protease_HslV, proteasome_prot | 6e-56 | |
| COG0638 | 236 | COG0638, PRE1, 20S proteasome, alpha and beta subu | 9e-52 | |
| pfam00227 | 188 | pfam00227, Proteasome, Proteasome subunit | 4e-50 | |
| cd03762 | 188 | cd03762, proteasome_beta_type_6, proteasome beta t | 5e-42 | |
| TIGR03634 | 185 | TIGR03634, arc_protsome_B, proteasome endopeptidas | 4e-35 | |
| cd01901 | 164 | cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term | 6e-34 | |
| cd03764 | 188 | cd03764, proteasome_beta_archeal, Archeal proteaso | 3e-33 | |
| cd03761 | 188 | cd03761, proteasome_beta_type_5, proteasome beta t | 6e-22 | |
| cd03757 | 212 | cd03757, proteasome_beta_type_1, proteasome beta t | 8e-15 | |
| PTZ00488 | 247 | PTZ00488, PTZ00488, Proteasome subunit beta type-5 | 2e-14 | |
| TIGR03633 | 224 | TIGR03633, arc_protsome_A, proteasome endopeptidas | 3e-13 | |
| cd03756 | 211 | cd03756, proteasome_alpha_archeal, proteasome_alph | 2e-12 | |
| PRK03996 | 241 | PRK03996, PRK03996, proteasome subunit alpha; Prov | 3e-12 | |
| cd03760 | 197 | cd03760, proteasome_beta_type_4, proteasome beta t | 5e-12 | |
| cd03763 | 189 | cd03763, proteasome_beta_type_7, proteasome beta t | 2e-11 | |
| cd03758 | 193 | cd03758, proteasome_beta_type_2, proteasome beta t | 2e-11 | |
| cd01911 | 209 | cd01911, proteasome_alpha, proteasome alpha subuni | 5e-10 | |
| cd03753 | 213 | cd03753, proteasome_alpha_type_5, proteasome_alpha | 5e-08 | |
| pfam12465 | 38 | pfam12465, Pr_beta_C, Proteasome beta subunits C t | 2e-07 | |
| cd03759 | 195 | cd03759, proteasome_beta_type_3, proteasome beta t | 4e-07 | |
| COG0638 | 236 | COG0638, PRE1, 20S proteasome, alpha and beta subu | 1e-06 | |
| pfam00227 | 188 | pfam00227, Proteasome, Proteasome subunit | 5e-06 | |
| cd03750 | 227 | cd03750, proteasome_alpha_type_2, proteasome_alpha | 7e-06 | |
| TIGR03690 | 219 | TIGR03690, 20S_bact_beta, proteasome, beta subunit | 2e-05 | |
| cd03755 | 207 | cd03755, proteasome_alpha_type_7, proteasome_alpha | 4e-05 | |
| cd01912 | 189 | cd01912, proteasome_beta, proteasome beta subunit | 1e-04 | |
| cd01906 | 182 | cd01906, proteasome_protease_HslV, proteasome_prot | 2e-04 | |
| TIGR03634 | 185 | TIGR03634, arc_protsome_B, proteasome endopeptidas | 2e-04 | |
| cd03752 | 213 | cd03752, proteasome_alpha_type_4, proteasome_alpha | 3e-04 | |
| pfam08395 | 370 | pfam08395, 7tm_7, 7tm Chemosensory receptor | 3e-04 | |
| cd03764 | 188 | cd03764, proteasome_beta_archeal, Archeal proteaso | 0.001 | |
| PTZ00246 | 253 | PTZ00246, PTZ00246, proteasome subunit alpha; Prov | 0.004 |
| >gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-121
Identities = 138/218 (63%), Positives = 163/218 (74%), Gaps = 29/218 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG +F DGVVLGADTRAT+ IVA+KNC+KIHY+A NIYCCGAGTAADT+ T++I+
Sbjct: 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMIS 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S LEL +LNTG+ PRV+TA +L+Q LFRYQ
Sbjct: 61 SNLELHRLNTGRKPRVVTALTMLKQHLFRYQ----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GH+ AALVLGGVD TG HL++IYPHGS+D +PF TMGSGSLAAMSV E +KP+MTEEE
Sbjct: 92 GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
KKLV +AI AG+FNDLGSGSN+DLCVI K+GVEYLR Y
Sbjct: 152 KKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189 |
| >gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit | Back alignment and domain information |
|---|
Score = 223 bits (572), Expect = 3e-71
Identities = 81/217 (37%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG DGVVL ADTRA+ ++VA +N KI ++ NI AG+AADTQ T L+
Sbjct: 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
L L +L G+ V A LL +L+ Y+
Sbjct: 61 RNLRLYELRNGRELSVKAAANLLSNILYSYRG---------------------------- 92
Query: 346 GHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+L++GGVD G L+ + P GS PF GSGS A + + +KP+MT EE
Sbjct: 93 FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEE 152
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
+LV+ AI + + DL SG +D+ VI K+GVE LR
Sbjct: 153 AVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEELR 189
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189 |
| >gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 6e-56
Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG DGVVL AD R T +VA +KI + +I C AG AAD Q + +
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ +L +L G+ V +LL +L+ Y +
Sbjct: 61 KEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSL-------------------------- 94
Query: 346 GHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ +L++ GVD + G L+++ P GS +GSGS A+ + E +KP+MT EE
Sbjct: 95 RPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEE 154
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVI 432
+L A+ + + DL SG NI++ VI
Sbjct: 155 AIELALKALKSALERDLYSGGNIEVAVI 182
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182 |
| >gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-52
Identities = 71/249 (28%), Positives = 105/249 (42%), Gaps = 27/249 (10%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
F L Y+ ++ GTT VG DGVVL AD RAT ++A N +KI +
Sbjct: 10 FSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDD 69
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
+I AG AAD QV ++ +L +L G+ V +LL +L Y +
Sbjct: 70 HIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS-----G 124
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
R +L++ GVDD G L++ P GS + +GSG
Sbjct: 125 R---------------------PYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSG 163
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPY 443
S A E ++ +++ EE +L A+ A + D SG I++ VI K G L
Sbjct: 164 SQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGE 223
Query: 444 EIANVKGKK 452
EI +
Sbjct: 224 EIKKLLDDL 232
|
Length = 236 |
| >gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-50
Identities = 67/212 (31%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281
KTGTTIVG DGVVL AD RAT ++++ +KI + +I AG AAD Q
Sbjct: 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLV 61
Query: 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341
D ++ +L +L G+ V A R+ ++ Q G
Sbjct: 62 DYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQY-------------SGRRPYG---- 104
Query: 342 IDLCGHVSAALVLGGVDDTGA-HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
+L++ G D+ G HL++I P GS +GSGS A E +KP+M
Sbjct: 105 --------VSLLIAGYDEDGGPHLYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDM 156
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432
T EE +L A+ + D SG NI++ VI
Sbjct: 157 TLEEAVELAVKALKEAIERDALSGGNIEVAVI 188
|
The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188 |
| >gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 5e-42
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ + GVVLGAD+R + + VA + K+ + IYCC +G+AADTQ D +
Sbjct: 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVR 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
L++ + G+ P V TA L + + + Y+E
Sbjct: 61 YYLDMHSIELGEPPLVKTAASLFKNLCYNYKEM--------------------------- 93
Query: 346 GHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+SA +++ G D+ G +++I G PF GSGS ++N+KP MT EE
Sbjct: 94 --LSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEE 151
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
C K V++A++ + D SG I L +I K+GVE
Sbjct: 152 CIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVE 185
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188 |
| >gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-35
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 28/213 (13%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTT VG DGVVL AD RA+ VA KN +K+ + I AG+ D Q ++
Sbjct: 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
++ +L +L G+ V LL +L + F +
Sbjct: 61 KAEAKLYELRRGRPMSVKALATLLSNILNSNR---------------FFPFI-------- 97
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
L++GGVD+ G HL+++ P G + GSGS A V E ++ +M+ EE
Sbjct: 98 -----VQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEE 152
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV 437
KKL AI + + D+ SG+ ID+ VI K+GV
Sbjct: 153 AKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185
|
This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185 |
| >gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 6e-34
Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
+T V GVVL AD R + VA KI I AG AAD Q +
Sbjct: 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
L+L +L G+ V+ + L ++L Y +
Sbjct: 61 EALQLYRLRYGEPISVVALAKELAKLLQVYTQG--------------------------- 93
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNMTEEE 404
L++ GVD+ G +L+ I P G P GS S A S+ E +KP+MT EE
Sbjct: 94 RPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEE 153
Query: 405 CKKLVRDAIAA 415
+L A+ +
Sbjct: 154 AVELALKALKS 164
|
N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164 |
| >gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-33
Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT VG + DGVVL AD RA+ +A KN +KI + I AG+ D Q ++
Sbjct: 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
++ L +L G+ + LL +L F +
Sbjct: 61 AEARLYELRRGRPMSIKALATLLSNILNSS---------------KYFPYI--------- 96
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
L++GGVD+ G HL+++ P GS + GSGS A V E +K +MT EE
Sbjct: 97 ----VQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEA 152
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440
KKL AI + + D SG ID+ VI K+G + L
Sbjct: 153 KKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188 |
| >gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-22
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + IF GV++ D+RAT + +A + +K+ + + AG AAD Q ++
Sbjct: 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ L +L + V A++LL ML++Y+ G G
Sbjct: 61 RECRLYELRNKERISVAAASKLLSNMLYQYK--------------------GMG------ 94
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S ++ G D TG L+ + G+ ++GSGS A V +S ++ +++ EE
Sbjct: 95 --LSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEA 152
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440
L R AI D SG N++L ++++G +
Sbjct: 153 YDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188 |
| >gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 8e-15
Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 48/229 (20%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
G T++ D V+ DTR ++ + ++ KI + +G AD T +
Sbjct: 8 GGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRL 67
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQML-----FRYQEEECKKLVRDAIAAGVFNDLGSG 339
+++++ K + K +LL +L F Y VFN
Sbjct: 68 KARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYY---------------VFN----- 107
Query: 340 SNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFES---- 394
+L G+D+ G +++ P GS + + GS S + ++
Sbjct: 108 -------------ILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGR 154
Query: 395 -NWKP----NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
N ++ EE LV+DA + D+ +G ++++ +I K+G+E
Sbjct: 155 KNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIE 203
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212 |
| >gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 2e-14
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 210 FLASKGYSGPTARKT-----GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
FLA + A K GTT + + G+++ D++AT +A ++ +K+ +
Sbjct: 19 FLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINP 78
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
+ AG AAD +A Q L +L G++ V A+++L +++ Y+
Sbjct: 79 TLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYK-------- 130
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
G G +S ++ G D G LF + G+ + GSG
Sbjct: 131 ------------GMG--------LSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSG 170
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
S A V ++ +K ++ +EE + L R AI F D SG I+L ++K+G
Sbjct: 171 STYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG 222
|
Length = 247 |
| >gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-13
Identities = 57/232 (24%), Positives = 87/232 (37%), Gaps = 50/232 (21%)
Query: 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279
A K GTT VG DGVVL D R T + + +KI + +I +G AD +V
Sbjct: 24 EAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPS-SIEKIFKIDDHIGAATSGLVADARV 82
Query: 280 TTDLIASQLELLKLNTGKIPRVIT-ANRLLRQMLFRYQE----EECKKLVRDAIAA---- 330
D R+ NRL Y E E K + D
Sbjct: 83 LID---------------RARIEAQINRL------TYGEPIDVETLAKKICDLKQQYTQH 121
Query: 331 -GV--FNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLA 387
GV F AL++ GVDD G LF P G+ +G+G A
Sbjct: 122 GGVRPF---------------GVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQA 166
Query: 388 AMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
E ++ +++ +E +L A+ + V + L + N+++ I ++
Sbjct: 167 VTEFLEKEYREDLSLDEAIELALKALYSAVEDKL-TPENVEVAYITVEDKKF 217
|
This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224 |
| >gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 40/221 (18%)
Query: 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279
A K GTT +G +GVVL D R T + E + +KI+ + ++ +G AD +V
Sbjct: 23 EAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPE-SIEKIYKIDDHVGAATSGLVADARV 81
Query: 280 TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAA-----GV-- 332
D + ++ +L G+ V E K + D GV
Sbjct: 82 LIDRARVEAQIHRLTYGEPIDV----------------EVLVKKICDLKQQYTQHGGVRP 125
Query: 333 FNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVF 392
F AL++ GVDD G LF P G+ + +GSG A
Sbjct: 126 F---------------GVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFL 170
Query: 393 ESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433
E +K +M+ EE +L A+ A + + + N+++ +
Sbjct: 171 EKEYKEDMSLEEAIELALKALYAAL-EENETPENVEIAYVT 210
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211 |
| >gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 65/246 (26%), Positives = 86/246 (34%), Gaps = 62/246 (25%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K GTT VG DGVVL D R T I +KI + +I AG AD +V
Sbjct: 32 AVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSS-IEKIFKIDDHIGAASAGLVADARVL 90
Query: 281 TDL--IASQLELLKLNTGKIPRVITANRLLRQMLFRYQE----EECKKLVRDAIAA---- 330
D + +Q+ NRL Y E E K + D
Sbjct: 91 IDRARVEAQI----------------NRL------TYGEPIGVETLTKKICDHKQQYTQH 128
Query: 331 -GV--FNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPF---CT-MGS 383
GV F AL++ GVDD G LF P G T +G+
Sbjct: 129 GGVRPF---------------GVALLIAGVDDGGPRLFETDPSG----AYLEYKATAIGA 169
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLR 441
G M E N+K +++ EE +L A+A N+++ I L
Sbjct: 170 GRDTVMEFLEKNYKEDLSLEEAIELALKALAKAN-EGKLDPENVEIAYIDVETKKFRKLS 228
Query: 442 PYEIAN 447
EI
Sbjct: 229 VEEIEK 234
|
Length = 241 |
| >gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 34/225 (15%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
TGT+++ + DGV++ ADT + ++ KN ++I + N +G AD Q L
Sbjct: 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRL 60
Query: 284 IASQL---ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + E L P+ I + L R + R K N L +
Sbjct: 61 LDQLVIDDECLDDGHSLSPKEI-HSYLTRVLYNR----RSK-----------MNPLWN-- 102
Query: 341 NIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW--K 397
LV+GGVD+ G L + G++ P G G+ A+ + W K
Sbjct: 103 ----------TLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKK 152
Query: 398 PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRP 442
P++TEEE + L+ + + + D S + + V+ K GVE P
Sbjct: 153 PDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197 |
| >gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIVG +F DGVVLGADTRAT+ IVA+KNC
Sbjct: 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNC 31
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189 |
| >gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286
T++G D V+L ADT A +V + + KI+ ++ + +G A D + I
Sbjct: 3 TLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK 62
Query: 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCG 346
++L K+ G A R+ L L S +
Sbjct: 63 NIQLYKMRNGYELSPKAAANFTRRELAES--------------------LRSRTPY---- 98
Query: 347 HVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
V+ L+L G D G L+ I G+ VP+ G G+ +S+ + +KP+MT EE
Sbjct: 99 QVN--LLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEA 156
Query: 406 KKLVRDAIAAGVFNDLG-----SGSNIDLCVIKKNGVEYL 440
+L++ I +L + N + V+ K+G+ L
Sbjct: 157 LELMKKCI-----KELKKRFIINLPNFTVKVVDKDGIRDL 191
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193 |
| >gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 59/227 (25%), Positives = 87/227 (38%), Gaps = 55/227 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T VG DGVVL + + T + +KI + +I C AG AD +V
Sbjct: 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSV-EKIFKIDDHIGCAVAGLTADARV- 80
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIA-------- 329
L+ RV N +RY E + LV+ IA
Sbjct: 81 --LV------------NRARVEAQN-------YRYTYGEPIPVEVLVK-RIADLAQVYTQ 118
Query: 330 -AGV--FNDLGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GV F G +L++ G D + G L+ P G+ +G GS
Sbjct: 119 YGGVRPF------------G---VSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGS 163
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432
A + E +K ++T EE KL A+ + D NI++ V+
Sbjct: 164 QEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209 |
| >gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 31/217 (14%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G +GVVL + R T ++ + +KI + +I C +G AD +
Sbjct: 23 AIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADART- 80
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQE----EECKKLVRD-AIAAGVFND 335
LI RV N F Y E E + V D A+ F +
Sbjct: 81 --LIDHA------------RVEAQNHR-----FTYNEPMTVESVTQAVSDLALQ---FGE 118
Query: 336 LGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESN 395
G + AL++ GVD+ G LF+ P G+ +GSGS A S +
Sbjct: 119 GDDGKKA-MSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEK 177
Query: 396 WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432
+ +MT EE +KL +I V + + +N++L +
Sbjct: 178 YHKDMTLEEAEKLAL-SILKQVMEEKLNSTNVELATV 213
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213 |
| >gnl|CDD|204931 pfam12465, Pr_beta_C, Proteasome beta subunits C terminal | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIP--IVVESEQV 480
N +G++ G Y+FK GTTA+L T+ +P + V E V
Sbjct: 1 PNERGERQGSYKFKPGTTAVL-TESVPLKLDVVEETV 36
|
This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam00227. There is a conserved GTT sequence motif. There is a single completely conserved residue Y that may be functionally important. This family includes the C terminal of the beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway. Length = 38 |
| >gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 26/214 (12%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G +V D V + +D R + QK+ + +Y AG A D Q
Sbjct: 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQK 61
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
+ ++ L +L + + T + L+ +L Y++ V + + AG+ D
Sbjct: 62 LRFRVNLYRLREEREIKPKTFSSLISSLL--YEKRFGPYFV-EPVVAGLDPDGKP----- 113
Query: 344 LCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+ +D G S F G+ S + ES W+P+M +
Sbjct: 114 ---------FICTMDLIGC---------PSIPSDFVVSGTASEQLYGMCESLWRPDMEPD 155
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV 437
E + + A+ + V D SG + +I K+ V
Sbjct: 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDKV 189
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195 |
| >gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC-YLLSYSDLIA 197
L Y+ ++ GTT VG DGVVL AD RAT ++A N + D I
Sbjct: 13 EGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIG 72
Query: 198 VTVS 201
+ ++
Sbjct: 73 MAIA 76
|
Length = 236 |
| >gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKN 186
KTGTTIVG DGVVL AD RAT + + K+
Sbjct: 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKD 34
|
The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188 |
| >gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 41/234 (17%)
Query: 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279
A +G VG A+GVVL + + I E + K+ + +I +G D +V
Sbjct: 22 AAVSSGAPSVGIKAANGVVLATEKKVPSPLID-ESSVHKVEQITPHIGMVYSGMGPDFRV 80
Query: 280 TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDLGS 338
L+K A ++ +Q Y E +LVR+ IA+ V +
Sbjct: 81 ----------LVKK----------ARKIAQQYYLVYGEPIPVSQLVRE-IAS-VMQEYTQ 118
Query: 339 GSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP 398
+ G +L++ G D+ G +L+ + P GS T +G A + E +
Sbjct: 119 SGGVRPFG---VSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNE 175
Query: 399 NMTEEECKKLVRDAIAAGV------FNDLGSGSNIDLCVI-KKNGVEYLRPYEI 445
++ E DAI + F + NI++ + + G L P EI
Sbjct: 176 DLELE-------DAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEI 222
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 227 |
| >gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 36/187 (19%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIH----YMAKNIYCCGAGTAADTQVT 280
GTTIV + GV++ D RAT ++A ++ +K++ Y A I AGTA
Sbjct: 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGI----AGTAGLAIEL 57
Query: 281 TDLIASQLELL-KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339
L +LE K+ + ANRL +VR + A
Sbjct: 58 VRLFQVELEHYEKIEGVPLTLDGKANRL-------------AAMVRGNLPAA-------- 96
Query: 340 SNIDLCGHVSAALVLGGVDDTGA-HLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNWK 397
+ G L+ G D GA +F+ G + + +GSGS+ A + +
Sbjct: 97 ----MQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS 152
Query: 398 PNMTEEE 404
P++ E++
Sbjct: 153 PDLDEDD 159
|
Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219 |
| >gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 51/219 (23%), Positives = 81/219 (36%), Gaps = 41/219 (18%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRAT----DDTIVAEKNCQKIHYMAKNIYCCGAGTAAD 276
A + GTT VG D VVLG + ++ D + +KI + ++ AG AD
Sbjct: 23 AVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDP-----RTVRKICMLDDHVCLAFAGLTAD 77
Query: 277 TQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV--FN 334
+V + + + +L V R + + RY + + GV F
Sbjct: 78 ARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQ-----------SGGVRPFG 126
Query: 335 DLGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFE 393
+S ++ G D D L+ P G+ +G S E
Sbjct: 127 -------------IST--LIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLE 171
Query: 394 SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432
N+K MT ++ KL A+ V GS NI+L V+
Sbjct: 172 KNYKEEMTRDDTIKLAIKALLEVV--QSGSK-NIELAVM 207
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207 |
| >gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIVG DGVVL ADTRA+ ++VA +N
Sbjct: 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNF 31
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189 |
| >gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIVG DGVVL AD R T +VA
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTV 31
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182 |
| >gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCY-LLSYSDLIAVTVSSI 203
GTT VG DGVVL AD RA+ VA KN + D IA+T++
Sbjct: 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGS 49
|
This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185 |
| >gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 55/199 (27%)
Query: 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286
T +G + DG+VL A+ + T + + +KI+ + +I C AG +D + +
Sbjct: 31 TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILIN---- 86
Query: 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEE-CKKLVRDAIAAGVFNDLGSGSNIDLC 345
A + ++ L+ YQE ++LV+ LC
Sbjct: 87 ----------------YARLIAQRYLYSYQEPIPVEQLVQ-----------------RLC 113
Query: 346 GH--------------VSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMS 390
VS + G D G L+ P G+ +G+ + AA S
Sbjct: 114 DIKQGYTQYGGLRPFGVS--FLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQS 171
Query: 391 VFESNWKPNMTEEECKKLV 409
+ + ++K +MT EE L
Sbjct: 172 LLKQDYKDDMTLEEALALA 190
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213 |
| >gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 70 VKFFLLELRDRKFKFEIFRLFSLDFDTFLSYKMMGFISTYIVILIQ 115
++ FLL+L +K KF LF LD S M I+TY+VILIQ
Sbjct: 322 IEKFLLQLLHQKLKFTACGLFDLDRSLLFS--MFSAITTYLVILIQ 365
|
This family includes a number of gustatory and odorant receptors mainly from insect species such as A. gambiae and D. melanogaster. They are classified as G-protein-coupled receptors (GPCRs), or seven-transmembrane receptors. They show high sequence divergence, consistent with an ancient origin for the family. Length = 370 |
| >gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC-YLLSYSDLIAVTVS 201
TT VG + DGVVL AD RA+ +A KN + D IA+T++
Sbjct: 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIA 46
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188 |
| >gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 35/229 (15%)
Query: 229 VGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288
VG + +GV+LGAD + + K +KI+ + +I+C AG AD +
Sbjct: 35 VGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANI--------- 85
Query: 289 ELLKLNTGKIPRVITANRLLRQ-MLFRYQEEE-CKKLVRDAIAAGVFNDLGSGSNIDLCG 346
+I RL Q + Y E + ++LV + + S +
Sbjct: 86 ------------LINQCRLYAQRYRYTYGEPQPVEQLV-----VQICDLKQSYTQFGGLR 128
Query: 347 HVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+ + G D+ G L++ P G+ +G + A S+ + WK ++T E+
Sbjct: 129 PFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQG 188
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG------VEYLRPYEIANV 448
L + + + I++ ++ + L EIA +
Sbjct: 189 LLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAEL 237
|
Length = 253 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| KOG0173|consensus | 271 | 100.0 | ||
| COG0638 | 236 | PRE1 20S proteasome, alpha and beta subunits [Post | 100.0 | |
| cd03750 | 227 | proteasome_alpha_type_2 proteasome_alpha_type_2. T | 100.0 | |
| PTZ00246 | 253 | proteasome subunit alpha; Provisional | 100.0 | |
| cd03761 | 188 | proteasome_beta_type_5 proteasome beta type-5 subu | 100.0 | |
| PTZ00488 | 247 | Proteasome subunit beta type-5; Provisional | 100.0 | |
| cd03763 | 189 | proteasome_beta_type_7 proteasome beta type-7 subu | 100.0 | |
| cd03759 | 195 | proteasome_beta_type_3 proteasome beta type-3 subu | 100.0 | |
| TIGR03633 | 224 | arc_protsome_A proteasome endopeptidase complex, a | 100.0 | |
| PRK03996 | 241 | proteasome subunit alpha; Provisional | 100.0 | |
| cd03758 | 193 | proteasome_beta_type_2 proteasome beta type-2 subu | 100.0 | |
| cd03760 | 197 | proteasome_beta_type_4 proteasome beta type-4 subu | 100.0 | |
| KOG0176|consensus | 241 | 100.0 | ||
| TIGR03634 | 185 | arc_protsome_B proteasome endopeptidase complex, a | 100.0 | |
| cd03764 | 188 | proteasome_beta_archeal Archeal proteasome, beta s | 100.0 | |
| cd03752 | 213 | proteasome_alpha_type_4 proteasome_alpha_type_4. T | 100.0 | |
| cd03757 | 212 | proteasome_beta_type_1 proteasome beta type-1 subu | 100.0 | |
| cd03751 | 212 | proteasome_alpha_type_3 proteasome_alpha_type_3. T | 100.0 | |
| cd03762 | 188 | proteasome_beta_type_6 proteasome beta type-6 subu | 100.0 | |
| KOG0174|consensus | 224 | 100.0 | ||
| cd03749 | 211 | proteasome_alpha_type_1 proteasome_alpha_type_1. T | 100.0 | |
| TIGR03690 | 219 | 20S_bact_beta proteasome, beta subunit, bacterial | 100.0 | |
| cd03756 | 211 | proteasome_alpha_archeal proteasome_alpha_archeal. | 100.0 | |
| cd03755 | 207 | proteasome_alpha_type_7 proteasome_alpha_type_7. T | 100.0 | |
| cd03753 | 213 | proteasome_alpha_type_5 proteasome_alpha_type_5. T | 100.0 | |
| cd03765 | 236 | proteasome_beta_bacterial Bacterial proteasome, be | 100.0 | |
| cd03754 | 215 | proteasome_alpha_type_6 proteasome_alpha_type_6. T | 100.0 | |
| cd01912 | 189 | proteasome_beta proteasome beta subunit. The 20S p | 100.0 | |
| cd01911 | 209 | proteasome_alpha proteasome alpha subunit. The 20S | 100.0 | |
| KOG0175|consensus | 285 | 100.0 | ||
| KOG0178|consensus | 249 | 100.0 | ||
| TIGR03691 | 228 | 20S_bact_alpha proteasome, alpha subunit, bacteria | 100.0 | |
| PF00227 | 190 | Proteasome: Proteasome subunit; InterPro: IPR00135 | 100.0 | |
| cd01906 | 182 | proteasome_protease_HslV proteasome_protease_HslV. | 100.0 | |
| KOG0181|consensus | 233 | 99.97 | ||
| KOG0185|consensus | 256 | 99.97 | ||
| KOG0183|consensus | 249 | 99.96 | ||
| PRK05456 | 172 | ATP-dependent protease subunit HslV; Provisional | 99.96 | |
| KOG0184|consensus | 254 | 99.96 | ||
| cd01913 | 171 | protease_HslV Protease HslV and the ATPase/chapero | 99.96 | |
| KOG0863|consensus | 264 | 99.95 | ||
| TIGR03692 | 171 | ATP_dep_HslV ATP-dependent protease HslVU, peptida | 99.95 | |
| KOG0177|consensus | 200 | 99.95 | ||
| KOG0182|consensus | 246 | 99.95 | ||
| KOG0179|consensus | 235 | 99.94 | ||
| KOG0180|consensus | 204 | 99.91 | ||
| cd01901 | 164 | Ntn_hydrolase The Ntn hydrolases (N-terminal nucle | 99.89 | |
| COG0638 | 236 | PRE1 20S proteasome, alpha and beta subunits [Post | 99.73 | |
| PTZ00488 | 247 | Proteasome subunit beta type-5; Provisional | 99.65 | |
| cd03757 | 212 | proteasome_beta_type_1 proteasome beta type-1 subu | 99.63 | |
| cd03761 | 188 | proteasome_beta_type_5 proteasome beta type-5 subu | 99.63 | |
| cd03762 | 188 | proteasome_beta_type_6 proteasome beta type-6 subu | 99.61 | |
| TIGR03634 | 185 | arc_protsome_B proteasome endopeptidase complex, a | 99.6 | |
| cd03759 | 195 | proteasome_beta_type_3 proteasome beta type-3 subu | 99.59 | |
| cd03763 | 189 | proteasome_beta_type_7 proteasome beta type-7 subu | 99.57 | |
| cd03752 | 213 | proteasome_alpha_type_4 proteasome_alpha_type_4. T | 99.57 | |
| cd03760 | 197 | proteasome_beta_type_4 proteasome beta type-4 subu | 99.56 | |
| cd03758 | 193 | proteasome_beta_type_2 proteasome beta type-2 subu | 99.56 | |
| PTZ00246 | 253 | proteasome subunit alpha; Provisional | 99.55 | |
| TIGR03690 | 219 | 20S_bact_beta proteasome, beta subunit, bacterial | 99.54 | |
| cd01911 | 209 | proteasome_alpha proteasome alpha subunit. The 20S | 99.54 | |
| cd03750 | 227 | proteasome_alpha_type_2 proteasome_alpha_type_2. T | 99.53 | |
| cd03756 | 211 | proteasome_alpha_archeal proteasome_alpha_archeal. | 99.52 | |
| cd03765 | 236 | proteasome_beta_bacterial Bacterial proteasome, be | 99.52 | |
| cd03764 | 188 | proteasome_beta_archeal Archeal proteasome, beta s | 99.5 | |
| TIGR03633 | 224 | arc_protsome_A proteasome endopeptidase complex, a | 99.5 | |
| KOG0173|consensus | 271 | 99.48 | ||
| cd03753 | 213 | proteasome_alpha_type_5 proteasome_alpha_type_5. T | 99.48 | |
| cd03749 | 211 | proteasome_alpha_type_1 proteasome_alpha_type_1. T | 99.46 | |
| PRK03996 | 241 | proteasome subunit alpha; Provisional | 99.44 | |
| PF00227 | 190 | Proteasome: Proteasome subunit; InterPro: IPR00135 | 99.44 | |
| cd03755 | 207 | proteasome_alpha_type_7 proteasome_alpha_type_7. T | 99.43 | |
| cd01912 | 189 | proteasome_beta proteasome beta subunit. The 20S p | 99.42 | |
| cd01906 | 182 | proteasome_protease_HslV proteasome_protease_HslV. | 99.39 | |
| cd03754 | 215 | proteasome_alpha_type_6 proteasome_alpha_type_6. T | 99.39 | |
| cd03751 | 212 | proteasome_alpha_type_3 proteasome_alpha_type_3. T | 99.38 | |
| COG5405 | 178 | HslV ATP-dependent protease HslVU (ClpYQ), peptida | 99.14 | |
| TIGR03691 | 228 | 20S_bact_alpha proteasome, alpha subunit, bacteria | 99.13 | |
| KOG0175|consensus | 285 | 99.12 | ||
| COG3484 | 255 | Predicted proteasome-type protease [Posttranslatio | 98.92 | |
| KOG0179|consensus | 235 | 98.78 | ||
| KOG0185|consensus | 256 | 98.62 | ||
| cd01901 | 164 | Ntn_hydrolase The Ntn hydrolases (N-terminal nucle | 98.4 | |
| KOG0176|consensus | 241 | 98.38 | ||
| KOG0174|consensus | 224 | 98.33 | ||
| cd01913 | 171 | protease_HslV Protease HslV and the ATPase/chapero | 97.8 | |
| TIGR03692 | 171 | ATP_dep_HslV ATP-dependent protease HslVU, peptida | 97.61 | |
| KOG0180|consensus | 204 | 97.59 | ||
| KOG0177|consensus | 200 | 97.44 | ||
| PRK05456 | 172 | ATP-dependent protease subunit HslV; Provisional | 97.23 | |
| COG5405 | 178 | HslV ATP-dependent protease HslVU (ClpYQ), peptida | 97.08 | |
| KOG0178|consensus | 249 | 96.23 | ||
| KOG0184|consensus | 254 | 95.91 | ||
| PF12465 | 38 | Pr_beta_C: Proteasome beta subunits C terminal ; I | 95.73 | |
| PF09894 | 194 | DUF2121: Uncharacterized protein conserved in arch | 95.72 | |
| KOG0863|consensus | 264 | 93.34 | ||
| KOG0183|consensus | 249 | 91.65 | ||
| COG4079 | 293 | Uncharacterized protein conserved in archaea [Func | 87.35 | |
| PF08395 | 372 | 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013 | 80.68 |
| >KOG0173|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=363.05 Aligned_cols=245 Identities=64% Similarity=1.039 Sum_probs=234.0
Q ss_pred HHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccC
Q psy10990 137 EINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGY 216 (486)
Q Consensus 137 ~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~ 216 (486)
+||++|+++|+++|+.++||||||||+|+||||||||||||.|++||+|+|+|||++
T Consensus 18 ~rn~~l~~~g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~i----------------------- 74 (271)
T KOG0173|consen 18 QRNAALLKKGLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFI----------------------- 74 (271)
T ss_pred hhHHHHHhcCCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhc-----------------------
Confidence 589999999999999999999999999999999999999999999999999999883
Q ss_pred CCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 217 ~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
.++|+|+++|..+|...+.++...++.+|.+..+
T Consensus 75 ----------------------------------------------a~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 75 ----------------------------------------------APNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred ----------------------------------------------ccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 3788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV 376 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~ 376 (486)
+.+.+-.....+++.+++|. ...++.++++|+|..||+||.+-|.|+...-
T Consensus 109 R~~rVv~A~~mlkQ~LFrYq-----------------------------G~IgA~LiiGGvD~TGpHLy~i~phGStd~~ 159 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQ-----------------------------GHIGAALILGGVDPTGPHLYSIHPHGSTDKL 159 (271)
T ss_pred CCCceeeHHHHHHHHHHHhc-----------------------------CcccceeEEccccCCCCceEEEcCCCCcCcc
Confidence 99999888899999998887 4567899999999999999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCc
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDY 456 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~ 456 (486)
+|+++|+|++.++++||..|++||++|||++|+.+|+.+.+.+|..+|+|+++++|++.+++++.++..++....+..+|
T Consensus 160 Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~~r~~~y 239 (271)
T KOG0173|consen 160 PFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKGERTGRY 239 (271)
T ss_pred ceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeEEEEEEEeeeEE
Q psy10990 457 RFKRGTTALLSTQRIPIVVESEQ 479 (486)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~ 479 (486)
+|++|+|+||+|...|+.+.-+.
T Consensus 240 ~~~~gtT~VL~~~v~~l~~~~~~ 262 (271)
T KOG0173|consen 240 KFKPGTTAVLKEKVYPLLVEVEI 262 (271)
T ss_pred eeCCCceEEEeeeeeeeeeeeeh
Confidence 99999999999999999887543
|
|
| >COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=314.04 Aligned_cols=221 Identities=32% Similarity=0.433 Sum_probs=208.4
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
.|+++.+++|.++........|+|+||++++||||+|+|++.+.++++...+.+||++|++|+++++||..+|++.|.++
T Consensus 9 ~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~ 88 (236)
T COG0638 9 IFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRY 88 (236)
T ss_pred eECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHH
Confidence 36778999999998777777789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCce
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAH 363 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~ 363 (486)
++.+++.|.+.++++++++.+++.+++.+|.+++. .|||+++++++|+|+++|+
T Consensus 89 ~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--------------------------~rP~gv~~iiaG~d~~~p~ 142 (236)
T COG0638 89 ARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--------------------------GRPYGVSLLVAGVDDGGPR 142 (236)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--------------------------cccceEEEEEEEEcCCCCe
Confidence 99999999999999999999999999999999931 2899999999999987799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRP 442 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~ 442 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++|++|||++++.+||+.+++||..++++++|+++++ +|++.+++
T Consensus 143 Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~ 222 (236)
T COG0638 143 LYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDG 222 (236)
T ss_pred EEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999 79999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+++..++.
T Consensus 223 ~~~~~~~~ 230 (236)
T COG0638 223 EEIKKLLD 230 (236)
T ss_pred HHHHHHHH
Confidence 99886654
|
|
| >cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=308.57 Aligned_cols=218 Identities=21% Similarity=0.314 Sum_probs=201.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++| ..+++++|+|+||++++||||+|+|++.+. .+....+.+||++|++|+++++||..+|++.+.+.+
T Consensus 8 fsp~Grl~Qvey-A~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (227)
T cd03750 8 FSPSGKLVQIEY-ALAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKA 85 (227)
T ss_pred ECCCCeEhHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHH
Confidence 667899999999 467889999999999999999999999874 455667899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++. +| .|||+++++++|||..||+|
T Consensus 86 r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~-------------------~~-----~rP~~v~~li~G~D~~g~~L 141 (227)
T cd03750 86 RKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQS-------------------GG-----VRPFGVSLLIAGWDEGGPYL 141 (227)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----CCChheEEEEEEEeCCCCEE
Confidence 9999999999999999999999999999888721 11 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~ 443 (486)
|++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||+.+.+++. +++++++++|+++ |+++++|+
T Consensus 142 y~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ 220 (227)
T cd03750 142 YQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPA 220 (227)
T ss_pred EEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHH
Confidence 999999999999999999999999999999999999999999999999999998875 8899999999996 79999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
||++++
T Consensus 221 ei~~~~ 226 (227)
T cd03750 221 EIKDYL 226 (227)
T ss_pred HHHHHh
Confidence 998765
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >PTZ00246 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.14 Aligned_cols=222 Identities=20% Similarity=0.315 Sum_probs=206.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++++|+|++|+ .++++.|+|+||++++||||+|+|++.+.+++++..+.+||++|++++++++||..+|.+.+.+.+
T Consensus 12 fsp~Grl~QvEYA-~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 90 (253)
T PTZ00246 12 FSPEGRLYQVEYA-LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQC 90 (253)
T ss_pred ECCCCEEhHHHHH-HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHH
Confidence 6678999999994 678899999999999999999999999999888877889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|.+.++.++++..+++.++..++.+++. +| .|||+++++++|||. .||+
T Consensus 91 r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~-------------------~~-----~rP~~v~~li~G~D~~~gp~ 146 (253)
T PTZ00246 91 RLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQF-------------------GG-----LRPFGVSFLFAGYDENLGYQ 146 (253)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccc-------------------cC-----cccCCEEEEEEEEeCCCCcE
Confidence 9999999999999999999999999998887731 11 389999999999995 7899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC------E
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG------V 437 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG------~ 437 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++| +
T Consensus 147 Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~ 226 (253)
T PTZ00246 147 LYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQ 226 (253)
T ss_pred EEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 8
Q ss_pred EEcCccccccccCc
Q psy10990 438 EYLRPYEIANVKGK 451 (486)
Q Consensus 438 ~~l~~~eI~~~~~~ 451 (486)
+.++++||++++..
T Consensus 227 ~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 227 KMLSEKEIAELLKK 240 (253)
T ss_pred EECCHHHHHHHHHH
Confidence 99999999998755
|
|
| >cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=285.49 Aligned_cols=187 Identities=28% Similarity=0.427 Sum_probs=180.0
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++++|.+++ .||++++++||||+.||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~ls~~l~~~~~----------------------------~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~ 132 (188)
T cd03761 81 KLLSNMLYQYKG----------------------------MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGS 132 (188)
T ss_pred HHHHHHHHhcCC----------------------------CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccH
Confidence 999999998882 6899999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
++++++||+.|+++||+|||++++.+||+.+.+||..++++++|++|+++|++..
T Consensus 133 ~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 133 TYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 9999999999999999999999999999999999999999999999999998765
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >PTZ00488 Proteasome subunit beta type-5; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=298.24 Aligned_cols=210 Identities=25% Similarity=0.372 Sum_probs=195.5
Q ss_pred cCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhh
Q psy10990 215 GYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN 294 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~ 294 (486)
+.+.+-.+++|+|+|||+++||||+|+|++.+.+.++...+.+||++|+++++++.||..+|++.+.+.++.+++.|++.
T Consensus 29 ~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~ 108 (247)
T PTZ00488 29 DANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELR 108 (247)
T ss_pred cCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999999999999998878888889999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCcee
Q psy10990 295 TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSD 374 (486)
Q Consensus 295 ~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~ 374 (486)
++++++++.+++++++++|.++. -|+.+++|+||||.+||+||++||+|++.
T Consensus 109 ~g~~isv~~la~~ls~~l~~~R~----------------------------~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~ 160 (247)
T PTZ00488 109 NGELISVAAASKILANIVWNYKG----------------------------MGLSMGTMICGWDKKGPGLFYVDNDGTRL 160 (247)
T ss_pred HCCCCCHHHHHHHHHHHHHhcCC----------------------------CCeeEEEEEEEEeCCCCEEEEEcCCccee
Confidence 99999999999999999876650 24555589999998899999999999999
Q ss_pred ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcC
Q psy10990 375 TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKK 452 (486)
Q Consensus 375 e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~ 452 (486)
+++++|+|+|+.+++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++.++++||++++..-
T Consensus 161 ~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~ 238 (247)
T PTZ00488 161 HGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKY 238 (247)
T ss_pred ecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998653
|
|
| >cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=282.15 Aligned_cols=189 Identities=73% Similarity=1.190 Sum_probs=181.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|++++++.++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++.+|.++ .||++++++||||+.||+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~ 131 (189)
T cd03763 81 TMLKQHLFRYQ-----------------------------GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGS 131 (189)
T ss_pred HHHHHHHHHcC-----------------------------CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCH
Confidence 99999887655 5999999999999888999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~ 443 (486)
+.++++||++|+++||++||++++++||+.+.+||+.++++++|++|+++|+++.+|+
T Consensus 132 ~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 132 LAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999998875
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=284.02 Aligned_cols=189 Identities=22% Similarity=0.298 Sum_probs=178.4
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVIT 303 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~ 303 (486)
+|+|+||++++||||+|+|++.+.++++...+.+||++|++|+++++||..+|++.+.+.++.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 58999999999999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEE
Q psy10990 304 ANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTM 381 (486)
Q Consensus 304 la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~Ai 381 (486)
+++++++.+|..+ .+||++++++||||. .+|+||++||+|++.++. ++|+
T Consensus 82 la~~l~~~ly~~r----------------------------~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~ 133 (195)
T cd03759 82 FSSLISSLLYEKR----------------------------FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVS 133 (195)
T ss_pred HHHHHHHHHHHhc----------------------------CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEE
Confidence 9999999986544 179999999999996 569999999999998887 9999
Q ss_pred cCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
|+|++.++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+++.
T Consensus 134 G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 134 GTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred cccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=292.47 Aligned_cols=213 Identities=27% Similarity=0.375 Sum_probs=195.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.+ +....+.+||++|++++++++||..+|++.+.+.+
T Consensus 10 f~p~Grl~Qieya-~~av~~G~tvigi~~~dgvvlaad~r~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 87 (224)
T TIGR03633 10 FSPDGRLYQVEYA-REAVKRGTTAVGIKTKDGVVLAVDKRITSK-LVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRA 87 (224)
T ss_pred ECCCCeEeHHHHH-HHHHHcCCCEEEEEECCEEEEEEeccCCcc-ccCCCccceEEEECCCEEEEEeecHHhHHHHHHHH
Confidence 5678999999995 567899999999999999999999998744 55557889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+++.++++.+++.+++.++.+++. ++ .|||+++++++|+|+.+|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~-------------------~~-----~rP~~v~~ll~G~d~~~~~L 143 (224)
T TIGR03633 88 RIEAQINRLTYGEPIDVETLAKKICDLKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 143 (224)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----ccccceEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999877621 11 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~ 442 (486)
|++||.|++.+++++|+|+|++.++++||+.|+++|+++||++++++||+.+.+ |..++++++|++|+++| ++.+++
T Consensus 144 y~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 144 FETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred EEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 999999999999999999999999999999999999999999999999999887 88899999999999988 888777
Q ss_pred cc
Q psy10990 443 YE 444 (486)
Q Consensus 443 ~e 444 (486)
+|
T Consensus 223 ~~ 224 (224)
T TIGR03633 223 EE 224 (224)
T ss_pred CC
Confidence 64
|
This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. |
| >PRK03996 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=297.24 Aligned_cols=219 Identities=27% Similarity=0.361 Sum_probs=201.1
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 17 fsp~Gr~~Q~eya-~~av~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 94 (241)
T PRK03996 17 FSPDGRLYQVEYA-REAVKRGTTAVGVKTKDGVVLAVDKRITSP-LIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRA 94 (241)
T ss_pred ECCCCeEhHHHHH-HHHHHhCCCEEEEEeCCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHH
Confidence 5678999999995 577899999999999999999999998854 44566889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+++.++++.+++.+++.++.+++. +| .|||++++++||+|..||+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~~~~ilaG~d~~gp~L 150 (241)
T PRK03996 95 RVEAQINRLTYGEPIGVETLTKKICDHKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 150 (241)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----ccchheEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999888721 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~ 442 (486)
|.+||+|++.+++++|+|.|++.++++||+.|+++|+++||++++++||+.+.++ ..++++++|++|+++| ++.+++
T Consensus 151 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~ 229 (241)
T PRK03996 151 FETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSV 229 (241)
T ss_pred EEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCH
Confidence 9999999999999999999999999999999999999999999999999999875 5588999999999987 999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+||++++.
T Consensus 230 ~ei~~~~~ 237 (241)
T PRK03996 230 EEIEKYLE 237 (241)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=282.50 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=179.6
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.+....+.+||++|+++++++.||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999888877888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++++|.+++. .|||+++++++|||+ .||+||++||+|++.+++++|+|+|
T Consensus 82 ~~l~~~~~~~~~~--------------------------~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g 135 (193)
T cd03758 82 NFTRRELAESLRS--------------------------RTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYG 135 (193)
T ss_pred HHHHHHHHHHhhc--------------------------CCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeec
Confidence 9999999876621 169999999999996 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
+++++++||+.|+++||.|||++++.+|++.+.+||..++++++|++|+++|++.++
T Consensus 136 s~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 136 AYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 999999999999999999999999999999999999999999999999999988653
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=281.34 Aligned_cols=193 Identities=25% Similarity=0.393 Sum_probs=179.0
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH-HhHhhcCCCCcHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE-LLKLNTGKIPRVI 302 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~-~~~l~~g~~~~v~ 302 (486)
+|+|+||++++||||+|+|++.+.+.+....+.+||++|+++++++.||..+|++.+.++++.++. .+.+.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999887777777889999999999999999999999999999999987 4667899999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEE
Q psy10990 303 TANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTM 381 (486)
Q Consensus 303 ~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~Ai 381 (486)
.+++++++++|.++. + .|||++++|+||||+ .||+||++||+|++.+++++|+
T Consensus 81 ~la~~i~~~~y~~~~-----------------------~---~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~ 134 (197)
T cd03760 81 EIHSYLTRVLYNRRS-----------------------K---MNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVAT 134 (197)
T ss_pred HHHHHHHHHHHHHhh-----------------------c---CCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEE
Confidence 999999998765441 0 289999999999997 7899999999999999999999
Q ss_pred cCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCc
Q psy10990 382 GSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRP 442 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~ 442 (486)
|+|+++++++||+.|++ +||+|||++++.+||+.+.+||..++++++|++|+++|+++..|
T Consensus 135 G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 135 GFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred ccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 99999999999999999 99999999999999999999999999999999999999987665
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >KOG0176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=284.41 Aligned_cols=223 Identities=22% Similarity=0.343 Sum_probs=203.5
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..++++.|+|.||++.++||++|+++|.++.++.+ .+++||++|++||.|++||..+|++.++++.
T Consensus 15 fSpEGRlfQVEY-aieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p-~sveKi~eid~HIgca~SGl~aDarTlve~a 92 (241)
T KOG0176|consen 15 FSPEGRLFQVEY-AIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEP-SSVEKIVEIDDHIGCAMSGLIADARTLVERA 92 (241)
T ss_pred cCCCceeeehhh-HHHHHhcCCceeeeeccceEEEEEeccccCcccCc-hhhhhheehhhceeeeccccccchHHHHHHH
Confidence 567899999999 57899999999999999999999999999887765 5789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
|.+++.|.+.||++++++.+.+.+++...++.+++.. ..-+.|||||++++||+|..||+|
T Consensus 93 rv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~-------------------~~~msRPFGValliAG~D~~gpqL 153 (241)
T KOG0176|consen 93 RVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDE-------------------EAIMSRPFGVALLIAGHDETGPQL 153 (241)
T ss_pred HHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcch-------------------hhhhcCCcceEEEEeeccCCCceE
Confidence 9999999999999999999999999987777643110 111239999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~ 443 (486)
|+.||+|+|+.+++-|||+|+..+.+.|++.|+++|+++||+.++++.|+.+++... +.+|+++++|+++ +++++.|+
T Consensus 154 ~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~f~~~t~E 232 (241)
T KOG0176|consen 154 YHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGEFHIYTPE 232 (241)
T ss_pred EEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCceEecCHH
Confidence 999999999999999999999999999999999999999999999999999997775 6699999999998 69999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
|++.++
T Consensus 233 E~~~~i 238 (241)
T KOG0176|consen 233 EVEQVI 238 (241)
T ss_pred HHHHHH
Confidence 998764
|
|
| >TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=276.95 Aligned_cols=185 Identities=36% Similarity=0.523 Sum_probs=177.2
Q ss_pred cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 225 GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 68999999999999999999988888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
++++++.+|.++ .|||+++++++|||++||+||.+||+|++.+++++++|+|
T Consensus 81 a~~l~~~~~~~~----------------------------~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g 132 (185)
T TIGR03634 81 ATLLSNILNSNR----------------------------FFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSG 132 (185)
T ss_pred HHHHHHHHHhcC----------------------------CCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCc
Confidence 999999887654 2899999999999998999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV 437 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~ 437 (486)
+++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus 133 ~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 133 SPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999984
|
This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. |
| >cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=276.79 Aligned_cols=188 Identities=36% Similarity=0.502 Sum_probs=179.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++|||++|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|.+.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++.+|.++ .|||++++++||+|+++|+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~i~~~~~~~~----------------------------~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~ 132 (188)
T cd03764 81 TLLSNILNSSK----------------------------YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGS 132 (188)
T ss_pred HHHHHHHHhcC----------------------------CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcH
Confidence 99999988765 28999999999999888999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+++++
T Consensus 133 ~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 133 PYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 99999999999999999999999999999999999999999999999999988764
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=286.49 Aligned_cols=203 Identities=19% Similarity=0.269 Sum_probs=189.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|.+.+.+.+
T Consensus 10 fsp~Grl~Qveya-~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (213)
T cd03752 10 FSPEGRLYQVEYA-MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYA 88 (213)
T ss_pred ECCCCEEhHHHhH-HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHH
Confidence 6778999999995 568899999999999999999999999888887777899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.++++++++.+++.++.+++.+++ .++ .|||++++|++|||+ .||+
T Consensus 89 r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~------------------~~~------~RP~~v~~li~G~D~~~g~~ 144 (213)
T cd03752 89 RLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQ------------------YGG------LRPFGVSFLYAGWDKHYGFQ 144 (213)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------CCC------cccceeEEEEEEEeCCCCCE
Confidence 999999999999999999999999999888872 111 389999999999995 6899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++.+||+.+.+||..++.+++|++|
T Consensus 145 ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 145 LYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999889999999875
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=283.62 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=180.8
Q ss_pred cccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 221 aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
-++.|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.+.+.++.+++.|++.++++++
T Consensus 4 ~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 4 YTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred ccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 35689999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeE
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFC 379 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~ 379 (486)
++.+++++++++|.++ .+||++++|+||||. .+|+||++||+|++.+++++
T Consensus 84 ~~~la~~ls~~ly~~R----------------------------~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~ 135 (212)
T cd03757 84 TEAIAQLLSTILYSRR----------------------------FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYS 135 (212)
T ss_pred HHHHHHHHHHHHHhhc----------------------------CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEE
Confidence 9999999999987544 169999999999996 46999999999999999999
Q ss_pred EEcCchhHHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 380 TMGSGSLAAMSVFESNWK---------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk---------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
|+|+|+++++++||+.|+ ++||++||++++++||+.+.+||+.++++++|++|+++|+++.
T Consensus 136 a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 136 AGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred EEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 999999999999999985 8999999999999999999999999999999999999998655
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=287.18 Aligned_cols=202 Identities=22% Similarity=0.216 Sum_probs=185.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++| +.+++++|+|+||++++||||+|+|++.+...+. ..+.+||++|++|+++++||..+|++.+.+.+
T Consensus 11 fsp~Grl~Qvey-a~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (212)
T cd03751 11 FSPDGRVFQVEY-ANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYE-PGSNKRIFNVDRHIGIAVAGLLADGRHLVSRA 88 (212)
T ss_pred ECCCCcchHHHH-HHHHHhcCCCEEEEEeCCEEEEEEEccccccccC-cchhcceeEecCcEEEEEEEChHhHHHHHHHH
Confidence 667899999999 5788899999999999999999999998764443 45789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++.++++.+++.++++++.+++ +++ .|||+++++++|||+.||+|
T Consensus 89 r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~-------------------~~~-----~rP~~vs~li~G~D~~gp~L 144 (212)
T cd03751 89 REEAENYRDNYGTPIPVKVLADRVAMYMHAYTL-------------------YSS-----VRPFGCSVLLGGYDSDGPQL 144 (212)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc-------------------CCC-----cCCceEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999988873 111 38999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
|++||+|++.+++++|+|+|+..++++||+.|+++||++||+++++++|+.+++.+...+.++||+++
T Consensus 145 y~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 145 YMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999866677889999874
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=273.63 Aligned_cols=185 Identities=36% Similarity=0.620 Sum_probs=177.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|++|++++||||+|+|++.+.+.+....+.+||++|++++++++||..+|++.+.+.++.+++.|++.+++.++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++++|.++ +||++++++||+|+ .||+||++||+|++.+++++++|+|
T Consensus 81 ~~l~~~~~~~~-----------------------------~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g 131 (188)
T cd03762 81 SLFKNLCYNYK-----------------------------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSG 131 (188)
T ss_pred HHHHHHHHhcc-----------------------------ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEccc
Confidence 99999998877 78999999999996 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+++++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus 132 ~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 132 STYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999864
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >KOG0174|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=274.27 Aligned_cols=206 Identities=37% Similarity=0.621 Sum_probs=188.0
Q ss_pred CCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCccccccc
Q psy10990 146 GYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 146 g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~G 225 (486)
|.-+..+++|||||+|+.|+||||||||||+|+|.||+||.++||++
T Consensus 9 ~~~~~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~--------------------------------- 55 (224)
T KOG0174|consen 9 GDLPKEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTP--------------------------------- 55 (224)
T ss_pred ccCcccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhccccee---------------------------------
Confidence 44455678999999999999999999999999999999999999977
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
|.|+++||-||+.+|.|.+.+.++..+..|.+++++++.+...|
T Consensus 56 ------------------------------------itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA 99 (224)
T KOG0174|consen 56 ------------------------------------ITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAA 99 (224)
T ss_pred ------------------------------------ccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 34788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.++++.|++++ -+.+.+++||||+ .|.++|.+...|...+.++..-|+|
T Consensus 100 ~l~r~~~Y~~re-----------------------------~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSG 150 (224)
T KOG0174|consen 100 SLFREICYNYRE-----------------------------MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSG 150 (224)
T ss_pred HHHHHHHHhCHH-----------------------------hhhcceEEeecccccCceEEEeecCceEeecceeeccCC
Confidence 999999999983 1335789999998 6799999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCE--EEcCcccccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV--EYLRPYEIANVK 449 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~--~~l~~~eI~~~~ 449 (486)
+.+++++++..|+++||+||++.++++|+..|++||-.+++-|.+.+|+++|+ ++..++++..+-
T Consensus 151 StfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 151 STFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred ceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999995 555666655443
|
|
| >cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=283.17 Aligned_cols=201 Identities=20% Similarity=0.198 Sum_probs=184.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+|||+++||||+|+|++.+..+ ..+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 fsp~Grl~Qveya-~~av~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 83 (211)
T cd03749 8 WSPQGRLFQVEYA-MEAVKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYM 83 (211)
T ss_pred ECCCCeEeHHHHH-HHHHhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHH
Confidence 6678999999995 5778899999999999999999999876653 24569999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|+++++++++++.+++.+++++|.+++ .++ .|||+++++++|||+.||+|
T Consensus 84 r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~------------------~~~------~rP~~v~~ii~G~D~~gp~L 139 (211)
T cd03749 84 RQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQ------------------RYG------RRPYGVGLLIAGYDESGPHL 139 (211)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------ccC------CCCceEEEEEEEEcCCCCeE
Confidence 999999999999999999999999999988873 111 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhcCC-CCCCceEEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFNDL-GSGSNIDLCVIK 433 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk--~dmS~eEAi~La~kaLk~a~~rD~-~sg~~IeI~iIt 433 (486)
|++||+|++.+++++|+|+|++.++++||++|+ ++||++||+++++++|+.++++|. .+++++||++|+
T Consensus 140 y~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 140 FQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred EEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999999999999999999 599999999999999999999886 899999999983
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.11 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=186.0
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVIT 303 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~ 303 (486)
.|+|+||++++||||+|+|++.+.+.+....+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 38899999999999999999999878887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCC-ceeecCeEE
Q psy10990 304 ANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHG-SSDTVPFCT 380 (486)
Q Consensus 304 la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsG-s~~e~~~~A 380 (486)
+++.+++++|.++.. + .|||++++++||||. .+|+||++||+| ++.+++++|
T Consensus 81 la~~ls~~~~~~~~~------------------~-------~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a 135 (219)
T TIGR03690 81 KANRLAAMVRGNLPA------------------A-------MQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHA 135 (219)
T ss_pred HHHHHHHHHHhhhhh------------------c-------cCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEE
Confidence 999999999876511 0 289999999999995 569999999999 577788999
Q ss_pred EcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc-------eEEEEEEcCCEEEcCccccccccC
Q psy10990 381 MGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN-------IDLCVIKKNGVEYLRPYEIANVKG 450 (486)
Q Consensus 381 iGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~-------IeI~iItkdG~~~l~~~eI~~~~~ 450 (486)
+|+|++.++++||+.|+++||.+||++++.+||+.+.++|..+++. ++|++|+++|++.++++||++++.
T Consensus 136 ~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~ 212 (219)
T TIGR03690 136 VGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELAR 212 (219)
T ss_pred EeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999866664 399999999999999999998864
|
Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model. |
| >cd03756 proteasome_alpha_archeal proteasome_alpha_archeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=279.07 Aligned_cols=202 Identities=26% Similarity=0.404 Sum_probs=186.1
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|+++++++.||..+|.+.+.+.+
T Consensus 9 fsp~G~l~Q~eya-~~av~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l 86 (211)
T cd03756 9 FSPDGRLYQVEYA-REAVKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKIDDHVGAATSGLVADARVLIDRA 86 (211)
T ss_pred ECCCCeEhHHHHH-HHHHHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHH
Confidence 5678999999994 677899999999999999999999998744 44556889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|.+.+++.++++.+++.+++.++.+++. ++ .|||+++++++|||+.+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~v~~ll~G~D~~~~~l 142 (211)
T cd03756 87 RVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 142 (211)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----eechhEEEEEEEEeCCCCEE
Confidence 9999999999999999999999999998877620 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.+++. ++++++|++|+
T Consensus 143 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 143 FETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred EEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999988776 89999999986
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=278.92 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=181.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|++|+++++||..+|.+.+.+.+
T Consensus 8 fsp~Gr~~Qveya-~~av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (207)
T cd03755 8 FSPDGHLFQVEYA-QEAVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRA 85 (207)
T ss_pred ECCCCeEeHHHHH-HHHHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHH
Confidence 5678999999994 677899999999999999999999987654 44445789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.+++.++++.+++.+++++|.+++. +. .|||+++++++|||+ .+|+
T Consensus 86 r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~------------------~~------~rP~~vs~ii~G~D~~~~p~ 141 (207)
T cd03755 86 RLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQS------------------GG------VRPFGISTLIVGFDPDGTPR 141 (207)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------cC------cccceeEEEEEEEeCCCCeE
Confidence 9999999999999999999999999999888731 11 289999999999996 5899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||..+.+ .+++++||+++
T Consensus 142 Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 142 LYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred EEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999986 57789999875
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=276.42 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=184.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|+||. .+++++|+|+||++++||||+|+|++.+.++ ....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 f~p~G~~~Q~eya-~~a~~~G~t~igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (213)
T cd03753 8 FSPEGRLFQVEYA-IEAIKLGSTAIGIKTKEGVVLAVEKRITSPL-MEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHA 85 (213)
T ss_pred CCCCCeEhHHHHH-HHHHhcCCCEEEEEeCCEEEEEEecccCCcC-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHH
Confidence 6778999999995 5778999999999999999999999987654 4456789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++.++++.+++.+++.+|++++. .++... ..|||+++++++|||+.||+|
T Consensus 86 r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~------------------~~~~~~-~~rP~~v~~ii~G~D~~gp~L 146 (213)
T cd03753 86 RVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEG------------------DDGKKA-MSRPFGVALLIAGVDENGPQL 146 (213)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCc------------------cccccc-ccccceEEEEEEEEcCCCCEE
Confidence 9999999999999999999999999999887731 100001 138999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
|++||+|++.+++++|+|+|++.++++|++.|+++||++||++++++||+.+.+++ .+++++||++|
T Consensus 147 y~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 147 FHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999987765 68899999875
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=276.52 Aligned_cols=199 Identities=23% Similarity=0.322 Sum_probs=174.4
Q ss_pred eeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEec----CeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC-CCcH
Q psy10990 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA----KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK-IPRV 301 (486)
Q Consensus 227 TiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~----~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~-~~~v 301 (486)
-+||++++||||+|+|++.+.+++... +.+||++|+ +|+++++||..+|.+.+.+.+|.+++.|++.+|+ .+++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 479999999999999999887766554 689999998 8999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc-cccccceeEEEEEEc-CCCceEEEEccCCceeec---
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID-LCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTV--- 376 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd-l~rP~gvslLiaG~D-~~Gp~Ly~iDpsGs~~e~--- 376 (486)
+.+++.++++++.+..+ ..+ ... -.|||+|++|++||| +.||+||++||+|++.++
T Consensus 81 ~~la~~i~~~l~~~~~q----------------~~~---~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~ 141 (236)
T cd03765 81 FDAARYVGETLREVQEQ----------------DRE---ALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPD 141 (236)
T ss_pred HHHHHHHHHHHHHHHhh----------------ccc---ccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCC
Confidence 99999999987654421 000 000 018999999999998 478999999999999998
Q ss_pred -CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccc
Q psy10990 377 -PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIA 446 (486)
Q Consensus 377 -~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~ 446 (486)
+|+|+|. +++++++||++|+++||+|||++++++||+.++.||..++++++|++|+++|++....+.++
T Consensus 142 ~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~ 211 (236)
T cd03765 142 TPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIE 211 (236)
T ss_pred CceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEec
Confidence 5689995 79999999999999999999999999999999999999999999999999998775554444
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=277.16 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=182.3
Q ss_pred hhHhHHhHhccCCCccccc-ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARK-TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~-~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+++|++|+ .++++ .|+|+||++++||||+|+|++.+.+.+... +.+||++|++++++++||..+|.+.+.+.
T Consensus 9 fsp~Grl~Qveya-~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~-~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~ 86 (215)
T cd03754 9 FSPEGRLYQVEYA-FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPS-TVTHLFRITDEIGCVMTGMIADSRSQVQR 86 (215)
T ss_pred ECCCCeEeHHHhH-HHHHhcCCccEEEEEeCCEEEEEEeccccccccCCc-ccCceEEEcCCEEEEEEechhhHHHHHHH
Confidence 5678999999995 55655 688999999999999999999877655444 78899999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.++..|++.++++++++.+++.++++++.+++ .+ + .|||+++++++|+|+ +||
T Consensus 87 ~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~------------------~~-~-----~RP~~v~~ii~G~D~~~gp 142 (215)
T cd03754 87 ARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQ------------------HA-Y-----MRPLGVSMILIGIDEELGP 142 (215)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC------------------CC-C-----CcCCeeEEEEEEEeCCCCe
Confidence 9999999999999999999999999999888772 11 1 289999999999996 689
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--C--CHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--M--TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--m--S~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+||++||+|++.+++++|+|+|++.++++||++|+++ | |.|||++++++||+.+.+||. .++++||++|
T Consensus 143 ~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 143 QLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred EEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999985 7 999999999999999999996 4899999875
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd01912 proteasome_beta proteasome beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=263.20 Aligned_cols=187 Identities=43% Similarity=0.623 Sum_probs=178.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+++....+.+|||+|++++++++||..+|++.+.++++.++..|++.+++.++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++.+|.++ .+||++++++||+|+ ++|+||.+||+|++.+++++|+|++
T Consensus 81 ~~l~~~~~~~~----------------------------~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~ 132 (189)
T cd01912 81 NLLSNILYSYR----------------------------GFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSG 132 (189)
T ss_pred HHHHHHHHhcC----------------------------CCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEccc
Confidence 99999998887 169999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
+++++++||+.|+++||++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 133 ~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 133 SKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999999999999999999998754
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd01911 proteasome_alpha proteasome alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=273.21 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=185.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|+||+ .+++.+|+|+||++++|||++|+|++.+.+. ....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 f~~~G~~~q~eya-~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l 85 (209)
T cd01911 8 FSPEGRLFQVEYA-LEAVKNGSTAVGIKGKDGVVLAVEKKVTSKL-LDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRA 85 (209)
T ss_pred CCCCCEEeHHHHH-HHHHHcCCCEEEEEECCEEEEEEEecCCccc-cCCcccceEEEecCCeEEEeccCcHhHHHHHHHH
Confidence 6678999999996 4678899999999999999999999988654 4557889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-Cce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~ 363 (486)
+..+..|++.+++.++++.++++++++++.+++. ++ .|||+++++++|+|.+ ||+
T Consensus 86 ~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~v~~iv~G~d~~~~~~ 141 (209)
T cd01911 86 RVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQY-------------------GG-----VRPFGVSLLIAGYDEEGGPQ 141 (209)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcc-------------------cC-----ccChhheEEEEEEcCCCCcE
Confidence 9999999999999999999999999999877721 11 2899999999999975 899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||.+||.|++.+++++++|+|+.+++++||+.|+++||++||++++.+||+.+.++|. ++++++|+++
T Consensus 142 Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 142 LYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred EEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999874
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. |
| >KOG0175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=272.18 Aligned_cols=199 Identities=26% Similarity=0.408 Sum_probs=183.5
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEE
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAI 232 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~ 232 (486)
..|||||+|++|++|||+|+|||||+|+||++++++||++|+
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn-------------------------------------- 109 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEIN-------------------------------------- 109 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeec--------------------------------------
Confidence 469999999999999999999999999999999999998852
Q ss_pred ecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH
Q psy10990 233 FADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML 312 (486)
Q Consensus 233 ~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l 312 (486)
+++.-+++|..+|++..++.+..++.+|++++++.+++...++.+++++
T Consensus 110 -------------------------------~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~ 158 (285)
T KOG0175|consen 110 -------------------------------PYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMV 158 (285)
T ss_pred -------------------------------hhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHH
Confidence 2223356889999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHH
Q psy10990 313 FRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVF 392 (486)
Q Consensus 313 ~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 392 (486)
++|+ |-| +.+..+++|||+.||.||.+|..|+-..-+-.++|+|+.+|+++|
T Consensus 159 y~Yk--------------------GmG--------LsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVL 210 (285)
T KOG0175|consen 159 YQYK--------------------GMG--------LSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVL 210 (285)
T ss_pred hhcc--------------------Ccc--------hhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEee
Confidence 9998 111 446789999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 393 ESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 393 ek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
++.|++|||.|||.+|+++++..|..||..+++-+.++.|+++|+..+++..+.+.
T Consensus 211 DsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L 266 (285)
T KOG0175|consen 211 DSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSEL 266 (285)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHH
Confidence 99999999999999999999999999999999999999999999999998877665
|
|
| >KOG0178|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=261.65 Aligned_cols=222 Identities=21% Similarity=0.289 Sum_probs=206.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..+++..+.|+||+..+||||+++.++.+++++......+||++++|+++|+.+|.++|+.+|.+.+
T Consensus 12 FspEGRLyQVEy-Ameais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~a 90 (249)
T KOG0178|consen 12 FSPEGRLYQVEY-AMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYA 90 (249)
T ss_pred cCCCcchHHHHH-HHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHH
Confidence 677999999999 5678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
|-..+.|.+.||++++.+.|+..+++..|.||| .|. .|||||+++.+|||+ .|.+
T Consensus 91 Ri~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQ------------------ygG------~RPFGVSfLYaGwd~~~gyq 146 (249)
T KOG0178|consen 91 RIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQ------------------YGG------KRPFGVSFLYAGWDDRYGYQ 146 (249)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhh------------------ccC------cCCCceeeeeeceecCcceE
Confidence 999999999999999999999999999999994 222 399999999999998 4799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC----EE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT-EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS-~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG----~~ 438 (486)
||+.||||++-.|++.++|.++..++++|+..|+.+.. ++||+.+|++.|....+.+.++...+|++.++++. .+
T Consensus 147 Ly~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~ 226 (249)
T KOG0178|consen 147 LYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLK 226 (249)
T ss_pred EEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEE
Confidence 99999999999999999999999999999999998755 99999999999999999998999999999999875 67
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
++++.||...+.+
T Consensus 227 i~~~~ev~kll~k 239 (249)
T KOG0178|consen 227 ILKKDEVLKLLEK 239 (249)
T ss_pred ecCHHHHHHHHHH
Confidence 8888898877654
|
|
| >TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=265.02 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=173.1
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC-
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG- 296 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g- 296 (486)
..++++.|+|+||++++||||+|+|++. .+.+||++|++|++++.||..+|++.+.+..+..++.|.+.++
T Consensus 20 A~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~ 91 (228)
T TIGR03691 20 ARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDR 91 (228)
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4677899999999999999999999862 3578999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCcee
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSD 374 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~ 374 (486)
.+++++.+++.+++.+..+. +++ .|||+|++|++|||+ .||+||++||+|++.
T Consensus 92 ~~~~v~~la~~~tq~~~~~~--------------------~~~-----~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~ 146 (228)
T TIGR03691 92 RDVTGRGLANAYAQTLGTIF--------------------TEQ-----QKPYEVEICVAEVGETPDQDQLYRITFDGSIV 146 (228)
T ss_pred CCccHHHHHHHHHhhccccc--------------------ccc-----cCcceEEEEEEEEcCCCCCCEEEEECCCCCce
Confidence 67888777664444332211 000 399999999999984 689999999999999
Q ss_pred ecC-eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh--hcCCCCCCceEEEEEEcCC----EEEcCcccccc
Q psy10990 375 TVP-FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV--FNDLGSGSNIDLCVIKKNG----VEYLRPYEIAN 447 (486)
Q Consensus 375 e~~-~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~--~rD~~sg~~IeI~iItkdG----~~~l~~~eI~~ 447 (486)
+++ ++|+|+|++.++++||++|+++||++||++++++||+.+. +++..++.++||+++++++ ++.++++||++
T Consensus 147 ~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~ 226 (228)
T TIGR03691 147 DERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALER 226 (228)
T ss_pred eccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHh
Confidence 976 8999999999999999999999999999999999999995 4667889999999999764 99999999987
Q ss_pred cc
Q psy10990 448 VK 449 (486)
Q Consensus 448 ~~ 449 (486)
++
T Consensus 227 ~l 228 (228)
T TIGR03691 227 LL 228 (228)
T ss_pred hC
Confidence 64
|
Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup. |
| >PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=253.57 Aligned_cols=187 Identities=29% Similarity=0.418 Sum_probs=172.0
Q ss_pred ccccceeeEEEecCeEEEEEeCCCCcCeeeecCC-cceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKN-CQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 222 V~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s-~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
|++|+|+||++++|||++|+|++.+.+......+ .+||++|+++++++.||..+|.+.+.+.++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999988776664444 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeec-Ce
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTV-PF 378 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~-~~ 378 (486)
++.+++.++++++.++.. ++ .||++++++++|+|+.+ |+||.+||+|++.++ ++
T Consensus 81 ~~~l~~~~~~~~~~~~~~-------------------~~-----~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~ 136 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYR-------------------SG-----RRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRF 136 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------TT-----TSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSE
T ss_pred chhhhhhhHHHHhhhccc-------------------cc-----ccCccccceeeeeccccccceeeecccccccccccc
Confidence 998888888888776632 00 28999999999999765 999999999999999 69
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+|+|++.++++||+.|+++||++||++++++||+.+.++|..++++++|++|
T Consensus 137 ~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 137 AAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred ccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999999999986
|
They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F .... |
| >cd01906 proteasome_protease_HslV proteasome_protease_HslV | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=247.44 Aligned_cols=181 Identities=36% Similarity=0.529 Sum_probs=171.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++|||++|+|++.+.+......+.+|||+|++++++++||..+|.+.+.+.++.++..|.+.+++.++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999988887678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++++|.++++ .|||+++++++|+|. .+|+||.+||+|++.+++++|+|+|
T Consensus 81 ~~l~~~~~~~~~~--------------------------~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g 134 (182)
T cd01906 81 KLLANLLYEYTQS--------------------------LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSG 134 (182)
T ss_pred HHHHHHHHHhCCC--------------------------ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCC
Confidence 9999999988821 289999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++.+++|++|
T Consensus 135 ~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 135 SQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred cHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999999999999999999989999999875
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo |
| >KOG0181|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=253.46 Aligned_cols=219 Identities=21% Similarity=0.317 Sum_probs=201.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|-|++|. ..+|..|.+.+|++-.||||+|+.++..+.+. ...+..|+..|.+||.|+.||..+|+++|.+..
T Consensus 13 FSpsGKL~QieyA-L~Av~~G~~SvGi~A~nGvVlatekk~~s~L~-~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~ 90 (233)
T KOG0181|consen 13 FSPSGKLVQIEYA-LTAVVNGQTSVGIKAANGVVLATEKKDVSPLV-DEESVRKVEKITPHIGCVYSGMGPDYRVLVHKS 90 (233)
T ss_pred EcCCCceehHHHH-HHHHhCCCCceeeeecCceEEEeccCCCCccc-hhhhhhhHhhccCCcceEEecCCCceeehhhHH
Confidence 5677888888884 67889999999999999999999987665544 456789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+..++.|..-|++++++..+...++..||+||| ||| .||||++++++|||..+|.|
T Consensus 91 rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTq--------------------sgG----vrPFGvslliaG~~~~~p~L 146 (233)
T KOG0181|consen 91 RKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQ--------------------SGG----VRPFGVSLLIAGWDEGGPLL 146 (233)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--------------------cCC----ccccceEEEEeecCCCceeE
Confidence 999999999999999999999999999999995 333 39999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|++||+|+++.|+++|+|.+...++.+||+.|.++|.+++++..|+..|++..+-.. +.++|||+++..++++.+.+.|
T Consensus 147 yQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~e 225 (233)
T KOG0181|consen 147 YQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAE 225 (233)
T ss_pred EEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHH
Confidence 999999999999999999999999999999999999999999999999999887664 7799999999999999999999
Q ss_pred cccccC
Q psy10990 445 IANVKG 450 (486)
Q Consensus 445 I~~~~~ 450 (486)
|+.+++
T Consensus 226 I~d~l~ 231 (233)
T KOG0181|consen 226 IEDYLA 231 (233)
T ss_pred HHHHHh
Confidence 998875
|
|
| >KOG0185|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=251.32 Aligned_cols=215 Identities=20% Similarity=0.347 Sum_probs=200.5
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH-hhcCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK-LNTGK 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~-l~~g~ 297 (486)
..+..+|+++||++|++|||+|+|+..+++++....+++|++++++|+.+++||..+|+|.+.+.+.....+.. +..|.
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~ 114 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQ 114 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999998887776554 56678
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCceeec
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTV 376 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~e~ 376 (486)
.+.++.+++++...||..+.+ +.|++..+++||+|++ .|.|..+|..|..++.
T Consensus 115 ~l~Pk~ih~yltrvlY~rRsK--------------------------mnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~ 168 (256)
T KOG0185|consen 115 SLGPKAIHSYLTRVLYARRSK--------------------------MNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYES 168 (256)
T ss_pred ccChHHHHHHHHHHHHHhhhc--------------------------cCchhhheeEeeecCCCCeeEEEEeeccccccC
Confidence 999999999999999988732 2699999999999994 5999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCC
Q psy10990 377 PFCTMGSGSLAAMSVFESNWK---PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk---~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~ 453 (486)
+.+|+|.|++.+.++|++.|. ++++.+||.+++.+||+...+||+.+.+++++++|+++|+++..|+.|++.|++++
T Consensus 169 ~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa~ 248 (256)
T KOG0185|consen 169 PVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFAE 248 (256)
T ss_pred chhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhhh
Confidence 999999999999999999997 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q psy10990 454 GDYRFK 459 (486)
Q Consensus 454 ~~~~~~ 459 (486)
..+.|.
T Consensus 249 ~~~gy~ 254 (256)
T KOG0185|consen 249 TIKGYE 254 (256)
T ss_pred hccccc
Confidence 998883
|
|
| >KOG0183|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-30 Score=242.94 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=197.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++...|+|++| .+++|..|+|.+|++.+++|+++++++....+.. .....||..+++|+++++||..+|++.|+++.
T Consensus 11 FSPDGhL~QVEY-AqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~-~r~~rkI~~ld~hV~mafaGl~aDArilinrA 88 (249)
T KOG0183|consen 11 FSPDGHLFQVEY-AQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQD-ERTVRKISMLDDHVVMAFAGLTADARILINRA 88 (249)
T ss_pred ECCCCCEEeeHh-HHHHHhcCceEEEeccCceEEEEEeecchhhhhh-hhhhhhheeecceeeEEecCCCccceeehhhH
Confidence 677889999999 4789999999999999999999999887665543 34589999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~ 363 (486)
|-+++.|++....+++++.+..+++.+.|+||+ |+| .||||++.+++|+|..| |+
T Consensus 89 rvecqShrlt~edpvtveyitRyiA~~kQrYTq--------------------s~g----rRPFGvs~Li~GfD~~g~p~ 144 (249)
T KOG0183|consen 89 RVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQ--------------------SNG----RRPFGVSTLIGGFDPDGTPR 144 (249)
T ss_pred hHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhc--------------------cCC----cccccceEEEEeeCCCCCee
Confidence 999999999999999999999999999999994 222 39999999999999976 99
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
||++||+|.|.+|++.|||.+++.+..+||++|.++ .|..++++|++++|..+...+ ++|+++++++.++ .+.+
T Consensus 145 lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l 221 (249)
T KOG0183|consen 145 LYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKML 221 (249)
T ss_pred eEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeec
Confidence 999999999999999999999999999999999876 788999999999999988654 5899999999988 9999
Q ss_pred CccccccccC
Q psy10990 441 RPYEIANVKG 450 (486)
Q Consensus 441 ~~~eI~~~~~ 450 (486)
+.++|+.+..
T Consensus 222 ~~~~I~~~v~ 231 (249)
T KOG0183|consen 222 ESEEIDDIVK 231 (249)
T ss_pred CHHHHHHHHH
Confidence 9999987653
|
|
| >PRK05456 ATP-dependent protease subunit HslV; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=232.45 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=140.2
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecC
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFAD 235 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd 235 (486)
||||||++|+||||||||+|+|.|.+|++++++||++
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~------------------------------------------- 37 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRR------------------------------------------- 37 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEE-------------------------------------------
Confidence 7999999999999999999999999999999988876
Q ss_pred eEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHH
Q psy10990 236 GVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFR 314 (486)
Q Consensus 236 GVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~ 314 (486)
| +++++++.||+.+|.+.|.+.++.+++.|+... .+..++.++.+. .
T Consensus 38 --------------------------i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~~a~l~~~l~-~ 85 (172)
T PRK05456 38 --------------------------LYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRAAVELAKDWR-T 85 (172)
T ss_pred --------------------------eCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHHHHHHHHHHH-h
Confidence 3 578889999999999999999999999887322 233333332221 0
Q ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec--CeEEEcCchhHHHHHH
Q psy10990 315 YQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVF 392 (486)
Q Consensus 315 ~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~L 392 (486)
+. +.+|+.+.++++ |. |+||.+||.|+..+. ++.++|+|+.++.++|
T Consensus 86 ~~---------------------------~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~l 134 (172)
T PRK05456 86 DR---------------------------YLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAA 134 (172)
T ss_pred cc---------------------------CCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHH
Confidence 00 115777888884 33 699999999999766 7999999999999999
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 393 ESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 393 ek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
+++|+ ++| ||++++++|++.+.+||..++++|++-.
T Consensus 135 d~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 135 RALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999 999 9999999999999999999999998854
|
|
| >KOG0184|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=233.69 Aligned_cols=216 Identities=21% Similarity=0.210 Sum_probs=192.7
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
.|++..+++|++| +.++|.+++|+|||+++||||+++++-.+++++.+. +..||+.|+.|+.++.+|..+|.+.+.++
T Consensus 14 ~fSpdGrvfQveY-A~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~-sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ 91 (254)
T KOG0184|consen 14 TFSPDGRVFQVEY-AQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPG-SNERIFSVDRHIGMAVAGLIPDGRHLVNR 91 (254)
T ss_pred eeCCCCceehHHH-HHHHHhcCCcEEEEecCCeEEEEEeeeecccccccC-CCCceEeecccccEEEeccccchHHHHHH
Confidence 3667889999999 578999999999999999999999999998888765 56899999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCce
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAH 363 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~ 363 (486)
.+.++..|+-.|+.+++...++.++.++.+.+|. || + .||||++.++++||++||+
T Consensus 92 ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tl-------------------y~--~---vRpfG~~~~~~~yd~~g~~ 147 (254)
T KOG0184|consen 92 ARDEAASWRKNYGDPIPGKHLADRVADYVHAFTL-------------------YS--S---VRPFGASTILGSYDDEGPQ 147 (254)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhhhheeeh-------------------hh--c---cccccceEEEEEEeCCCce
Confidence 9999999999999999999999999999999983 22 2 3999999999999999999
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc--CCEEEcC
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLR 441 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk--dG~~~l~ 441 (486)
||.++|+|.++.++++|+|.|.|.|++.||+.--.+|+.+|+++.+.+.|..+.+......-.+|+.++.. +|.+..-
T Consensus 148 LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~v 227 (254)
T KOG0184|consen 148 LYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKV 227 (254)
T ss_pred EEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccC
Confidence 99999999999999999999999999999999888999999999999999988766555556688888875 3555554
Q ss_pred cccc
Q psy10990 442 PYEI 445 (486)
Q Consensus 442 ~~eI 445 (486)
|.||
T Consensus 228 p~el 231 (254)
T KOG0184|consen 228 PSEL 231 (254)
T ss_pred cHHH
Confidence 5454
|
|
| >cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=225.71 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=137.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
|||+|++|+||||||||+|+|.|.+|++++++||+++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i------------------------------------------- 37 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRL------------------------------------------- 37 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEe-------------------------------------------
Confidence 8999999999999999999999999999999988773
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH-HH
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-FR 314 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l-~~ 314 (486)
++ +++++.||+.+|.+.|.+.++.+++.|+++.++ .+++.++.++ ++
T Consensus 38 --------------------------~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~ 86 (171)
T cd01913 38 --------------------------YNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRTDR 86 (171)
T ss_pred --------------------------CCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHhcc
Confidence 35 788899999999999999999999999887663 2233333321 11
Q ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCccccccc-eeEEEEEEcCCCceEEEEccCCceeecC--eEEEcCchhHHHHH
Q psy10990 315 YQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVS-AALVLGGVDDTGAHLFNIYPHGSSDTVP--FCTMGSGSLAAMSV 391 (486)
Q Consensus 315 ~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~g-vslLiaG~D~~Gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~ 391 (486)
+ +|+. +.++++++| +||.+||.|+..+.+ +.++|+|+.+++++
T Consensus 87 ~------------------------------~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ 132 (171)
T cd01913 87 Y------------------------------LRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAA 132 (171)
T ss_pred C------------------------------cCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHH
Confidence 1 3443 555655443 999999999999984 99999999999999
Q ss_pred HHhcCCCC-CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 392 FESNWKPN-MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 392 Lek~yk~d-mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
||..|+++ || +.++|.+|++.|++||..++++|++-.
T Consensus 133 ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 133 ARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 99999995 99 669999999999999999999998754
|
HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis. |
| >KOG0863|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=231.07 Aligned_cols=224 Identities=22% Similarity=0.224 Sum_probs=198.3
Q ss_pred cceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCc
Q psy10990 194 DLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273 (486)
Q Consensus 194 d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs 273 (486)
|.+..++++ +.+|||++| ..++++.|++.||++.+.-.|+++-++..+.+ ....+||++|++|+.++.+|.
T Consensus 7 d~d~t~wsP-----qGrl~QvEy-a~EavkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGL 77 (264)
T KOG0863|consen 7 DNDVTTWSP-----QGRLHQVEY-AMEAVKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGL 77 (264)
T ss_pred cCceeEECC-----cceehHHHH-HHHHHhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEecc
Confidence 445555554 789999999 57899999999999999988888777665432 345799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEE
Q psy10990 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALV 353 (486)
Q Consensus 274 ~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslL 353 (486)
++|.++|.++++.++..++..|++.+++..+...+.+.+|..|+. +. -|||||.++
T Consensus 78 t~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~------------------yg------rRpYGVGll 133 (264)
T KOG0863|consen 78 TADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQR------------------YG------RRPYGVGLL 133 (264)
T ss_pred CcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhh------------------hC------CccccceEE
Confidence 999999999999999999999999999999999999999888842 22 299999999
Q ss_pred EEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhcC-CCCCCceEEE
Q psy10990 354 LGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFND-LGSGSNIDLC 430 (486)
Q Consensus 354 iaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk--~dmS~eEAi~La~kaLk~a~~rD-~~sg~~IeI~ 430 (486)
++|||+.||+||+++|+|++.++++.+||+.+|.+.++||++.. ++++.||.+..++.||+.....| .+++.|++|+
T Consensus 134 v~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~ 213 (264)
T KOG0863|consen 134 VAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIA 213 (264)
T ss_pred EEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEE
Confidence 99999999999999999999999999999999999999999876 59999999999999999998744 6789999999
Q ss_pred EEEcCC-EEEcCccccccccC
Q psy10990 431 VIKKNG-VEYLRPYEIANVKG 450 (486)
Q Consensus 431 iItkdG-~~~l~~~eI~~~~~ 450 (486)
+|.+|. +.+++..++.++..
T Consensus 214 Ivgkd~pf~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 214 IVGKDEPFTILDQKDVAKYVD 234 (264)
T ss_pred EEeCCCceEeecHHHHHHHHH
Confidence 999985 99999988886643
|
|
| >TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=222.44 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=136.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
|||+|++|+||||||||+|+|+|.+|++++++||++++
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~------------------------------------------ 38 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLY------------------------------------------ 38 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeC------------------------------------------
Confidence 89999999999999999999999999999998887631
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH-HHh
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-FRY 315 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l-~~~ 315 (486)
+++++++.||+.+|.+.|.+.++.+++.|+++. .+.+++.++++. +++
T Consensus 39 --------------------------~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~ 87 (171)
T TIGR03692 39 --------------------------NGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWRTDRY 87 (171)
T ss_pred --------------------------CCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHhhccc
Confidence 377888999999999999999999999887643 244445544431 111
Q ss_pred hHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec--CeEEEcCchhHHHHHHH
Q psy10990 316 QEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVFE 393 (486)
Q Consensus 316 t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~Le 393 (486)
. +.+.+.++++++ ++||.+||.|++.+. ++.++|+|+.++.++||
T Consensus 88 ~-----------------------------~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld 134 (171)
T TIGR03692 88 L-----------------------------RRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAAR 134 (171)
T ss_pred c-----------------------------cccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHH
Confidence 1 223355565544 399999999999996 69999999999999999
Q ss_pred hcC-CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 394 SNW-KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 394 k~y-k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
..| +++|+ |++++.++++.|++||..++++|++-.
T Consensus 135 ~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 135 ALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999 57787 999999999999999999999998864
|
The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease. |
| >KOG0177|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=219.20 Aligned_cols=192 Identities=24% Similarity=0.341 Sum_probs=179.7
Q ss_pred eeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHH
Q psy10990 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANR 306 (486)
Q Consensus 227 TiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~ 306 (486)
+++||++.|.|++|+|+....+.+....+.+|++++++++.++.+|..+|.-.+.++++.++++|++++|.+++++.+++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCch
Q psy10990 307 LLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 307 ~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.++.+..+-. | .+||.|++++||+|. .||.||++|..|+..+.++.+.|.|+
T Consensus 83 FtR~~La~~LR--------------------s------r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~ 136 (200)
T KOG0177|consen 83 FTRRELAESLR--------------------S------RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGS 136 (200)
T ss_pred HHHHHHHHHHh--------------------c------CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchh
Confidence 99987754431 1 179999999999998 57999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
.++.++|+++|+||||.|||+++..+|+.++..|-..+..++.+.+|+|||++.++...
T Consensus 137 ~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~ 195 (200)
T KOG0177|consen 137 YFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDIN 195 (200)
T ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccccc
Confidence 99999999999999999999999999999999998888899999999999999987654
|
|
| >KOG0182|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=221.24 Aligned_cols=220 Identities=18% Similarity=0.210 Sum_probs=200.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|+....-..|-|.++++.+|++|+++.++.+.+++++ ..+..+|+|..+++|+.+|..+|.+...++.
T Consensus 16 FspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~-~tvt~~f~itk~ig~v~tG~~aDar~~v~ra 94 (246)
T KOG0182|consen 16 FSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDS-STVTHLFRITKKIGCVITGMIADARSQVQRA 94 (246)
T ss_pred ECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCccccccc-ccceeEEEeeccceEEEecCCcchHHHHHHH
Confidence 677899999999876555569999999999999999999988877655 4578899999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..+++.||.+|+++.|++.+++..|.|+|..+ +||+||.+++.|+|+ .||.
T Consensus 95 r~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~------------------------mRplg~~~~~i~~D~E~gP~ 150 (246)
T KOG0182|consen 95 RYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAA------------------------MRPLGVAATLIGVDEERGPS 150 (246)
T ss_pred HHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhh------------------------hcccceeEEEEEeccccCcc
Confidence 999999999999999999999999999999996422 399999999999998 5799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEY 439 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~ 439 (486)
+|.+||.|.+..++++|.|...+.+..+||++|+++ +|.+|++++++.||..++..|. ..+.+||++++++. +++
T Consensus 151 vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p~f~~ 229 (246)
T KOG0182|consen 151 VYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNPEFRI 229 (246)
T ss_pred eEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCcceee
Confidence 999999999999999999999999999999999987 7899999999999999998886 45789999999886 999
Q ss_pred cCccccccccC
Q psy10990 440 LRPYEIANVKG 450 (486)
Q Consensus 440 l~~~eI~~~~~ 450 (486)
|+.+||++-+.
T Consensus 230 Ls~~eie~hL~ 240 (246)
T KOG0182|consen 230 LSAEEIEEHLQ 240 (246)
T ss_pred ccHHHHHHHHH
Confidence 99999987653
|
|
| >KOG0179|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=209.57 Aligned_cols=193 Identities=24% Similarity=0.371 Sum_probs=180.9
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+-..+|+|+++|.+.|..|+|+|+|.+.+..+..++.+|||+++|++.++.||-.+|...|...++..+..|+..+++.
T Consensus 23 ~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ 102 (235)
T KOG0179|consen 23 SPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKK 102 (235)
T ss_pred CccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhccccc
Confidence 45567899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeecC
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVP 377 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~~ 377 (486)
|++...|+.|+..+|..+ | -||.+..+++|+|+.| +.+|+.||-|++....
T Consensus 103 ms~~s~A~lls~~LY~kR----------------F------------FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~ 154 (235)
T KOG0179|consen 103 MSIHSAAQLLSTILYSKR----------------F------------FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT 154 (235)
T ss_pred ccHHHHHHHHHHHHhhcc----------------c------------ccceeeeeeecccccCceeEEeecCCcceeeee
Confidence 999999999999999877 1 6999999999999954 9999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCC-----------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 378 FCTMGSGSLAAMSVFESNWK-----------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk-----------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+.|.|+++.+++++|++... +.||+|+|+.|+.+++..|.+||+.++++++|+++++||++.
T Consensus 155 ~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 155 CRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred eecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 99999999999999998642 358999999999999999999999999999999999999754
|
|
| >KOG0180|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=189.47 Aligned_cols=188 Identities=21% Similarity=0.271 Sum_probs=177.6
Q ss_pred cccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHH
Q psy10990 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVI 302 (486)
Q Consensus 223 ~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~ 302 (486)
.+|++++++.++++|.+|+|.|....+.....+.+|||+++++++++.+|...|.+.+.++++....+|+++.++.+-++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47899999999999999999999888877888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCcee-ecCeEE
Q psy10990 303 TANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSD-TVPFCT 380 (486)
Q Consensus 303 ~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~-e~~~~A 380 (486)
.+++.++..+|+.+. .||-+..++||.|++ .|++...|..|... ..+|++
T Consensus 86 ~~s~mvS~~lYekRf----------------------------gpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVv 137 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRF----------------------------GPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVV 137 (204)
T ss_pred HHHHHHHHHHHHhhc----------------------------CCcccceeEeccCCCCCeeEeecccccCcCccCCeEE
Confidence 999999999998881 699999999999984 59999999999976 567999
Q ss_pred EcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEE
Q psy10990 381 MGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438 (486)
Q Consensus 381 iGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~ 438 (486)
.|.++...++++|..|+|||..||..+.+.++|..+.+||+.+|+...+.+|+||++.
T Consensus 138 sGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 138 SGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred ecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 9999999999999999999999999999999999999999999999999999999754
|
|
| >cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=177.17 Aligned_cols=162 Identities=31% Similarity=0.362 Sum_probs=153.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|++|+++++|+++|+|++.+.+.........|++.++++++++.+|..+|.+.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 47899999999999999999888877677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec-CeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV-PFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~-~~~AiGsG 384 (486)
+.+++.++.+++ .+|++++++++|+|+++|+||.+||+|++.+. +++++|.+
T Consensus 81 ~~~~~~~~~~~~---------------------------~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~ 133 (164)
T cd01901 81 KELAKLLQVYTQ---------------------------GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSR 133 (164)
T ss_pred HHHHHHHHHhcC---------------------------CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCC
Confidence 999999988771 18999999999999988999999999999999 99999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIA 414 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk 414 (486)
+..+.++|++.|+++|+.+|+++++.+||+
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 134 SQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999985
|
N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t |
| >COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-18 Score=166.81 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=126.4
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~~aV 222 (486)
..+|||+||++++||||||||+|+|+|.++++++++||+++| ++.++.|| +.+.+ ++++|+..++.+..+
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 357899999999999999999999999999999999999986 77777777 33433 466888999998888
Q ss_pred cccceeeEEEe---c--------CeEEEEEeC-CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAIF---A--------DGVVLGADT-RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~~---k--------dGVVlAaDt-r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
..-++.++-.. . ..+|.|.|. .+....+++.++. ......++|||+......|++.++.+
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~-----~~~~~~a~Gsgs~~a~~~Le~~y~~~--- 178 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSY-----NEYKATAIGSGSQFAYGFLEKEYRED--- 178 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCce-----eecCEEEEcCCcHHHHHHHHhhccCC---
Confidence 88888775221 1 235556677 3345666666655 35678999999999999999966433
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ .|||.+|+.+|+.+++.||.+||++++
T Consensus 179 --------m~----------------~eeai~la~~al~~a~~rd~~s~~~~~ 207 (236)
T COG0638 179 --------LS----------------LEEAIELAVKALRAAIERDAASGGGIE 207 (236)
T ss_pred --------CC----------------HHHHHHHHHHHHHHHHhccccCCCCeE
Confidence 32 899999999999999999999997653
|
|
| >PTZ00488 Proteasome subunit beta type-5; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=158.23 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=122.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~a 221 (486)
++++|||+|||+++||||||+|+|++.|.++.+++++||++++ ++.++.+| +. ++.++.+|+.+++.+..
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5789999999999999999999999999999999999999986 55555555 22 24457788888888777
Q ss_pred ccccceeeEEEec---------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 222 RKTGTTIVGAIFA---------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 222 V~~GtTiIgI~~k---------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
+...+..++-... ..++.|.|... ....+++.++. ...+..+.|+|+......|++.++.
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~-----~~~~~~a~G~gs~~~~~~Le~~~k~----- 184 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTR-----LHGNMFSCGSGSTYAYGVLDAGFKW----- 184 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcce-----eecCCEEEccCHHHHHHHHHhcCcC-----
Confidence 7777666652221 23666688543 34455555554 3356778999999988888885533
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+.+|+..++.||..||++++
T Consensus 185 ------dm----------------s~eEai~l~~kal~~~~~Rd~~sg~~~e 214 (247)
T PTZ00488 185 ------DL----------------NDEEAQDLGRRAIYHATFRDAYSGGAIN 214 (247)
T ss_pred ------CC----------------CHHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 23 3899999999999999999999997754
|
|
| >cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-16 Score=151.54 Aligned_cols=168 Identities=12% Similarity=0.129 Sum_probs=122.6
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV 222 (486)
.+.|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| + .++.++.+|+..++.+..+
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 567999999999999999999999999999999999999986 56666666 2 2244577888888877777
Q ss_pred cccceeeEEEe---------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 223 KTGTTIVGAIF---------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 223 ~~GtTiIgI~~---------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
...+..++-.. ...++.|.|... ..+.+++.++. ...+..+.|+|+......|++.++.+-.
T Consensus 85 ~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~~~~-- 157 (212)
T cd03757 85 EAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSY-----ERETYSAGGSASSLIQPLLDNQVGRKNQ-- 157 (212)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCe-----eecCEEEEeecHHHHHHHHHHHHHhhcc--
Confidence 66666554211 224566688532 34556666654 3467889999999999998886532110
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+..+...+ +.+||.+|+.+|+..++.||..||+++.
T Consensus 158 ~~~~~~~m----------------s~eea~~l~~~~l~~~~~rd~~sg~~i~ 193 (212)
T cd03757 158 NNVERTPL----------------SLEEAVSLVKDAFTSAAERDIYTGDSLE 193 (212)
T ss_pred CcCCCCCC----------------CHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence 00011233 4899999999999999999999997754
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-16 Score=148.12 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=119.8
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|++.|.++.+++++||++++ +..++.+| ..+..++.+|+..++.+.++..-+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 55555555 223456778888888888777777
Q ss_pred eeeEEE---------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI---------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~---------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++.. +...++.|.|.. +....+++.++. ...+..+.|+|+......|++.++.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~---------- 145 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTR-----LKGDLFSVGSGSTYAYGVLDSGYRY---------- 145 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceE-----EEcCeEEEcccHHHHHHHHHhcCCC----------
Confidence 776521 123566678854 334455555554 3467888999999988888885432
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.|||.+|+.+|+..++.||..||+++.+
T Consensus 146 -~~----------------s~eea~~l~~~~l~~~~~rd~~sg~~~~v 176 (188)
T cd03761 146 -DL----------------SVEEAYDLARRAIYHATHRDAYSGGNVNL 176 (188)
T ss_pred -CC----------------CHHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 33 38999999999999999999999977653
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-16 Score=145.09 Aligned_cols=156 Identities=24% Similarity=0.219 Sum_probs=116.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|+++|.++.+++++||++++ ++.++.+| +.+.+++.+|+..++.+..+...+
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888787777666655
Q ss_pred eeeEE--------EecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGA--------IFADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI--------~~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++. -+...++.|.|+ . +..+.+.+.++. ...++.+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~-----~~~~~~~~G~g~~~~~~~Le~~~~----------- 144 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGML-----IRQPFAIGGSGSTYIYGYVDANYK----------- 144 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCE-----EecCEEEEcccHHHHHHHHHhcCC-----------
Confidence 55541 112345666785 3 234445555544 234677778999888888888553
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.+ +.+||.+|+++|+..++.||..+|+++++
T Consensus 145 ~~~----------------s~~ea~~l~~~al~~~~~rd~~~~~~~~i 176 (188)
T cd03762 145 PGM----------------TLEECIKFVKNALSLAMSRDGSSGGVIRL 176 (188)
T ss_pred CCC----------------CHHHHHHHHHHHHHHHHHhccccCCCEEE
Confidence 233 38999999999999999999999987654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=143.05 Aligned_cols=158 Identities=30% Similarity=0.338 Sum_probs=118.2
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
|||+||++++||||||+|+|+|.|.++..++++||++++ ++.++.+| +.+ ..++..|+..++.+.++...
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 899999999999999999999999999999999999987 56666666 222 33566777777777776666
Q ss_pred ceeeEEE---------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 226 TTIVGAI---------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 226 tTiIgI~---------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
+..++.. +...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~---------- 145 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGI-----IEDDYTATGSGSPVAYGVLEDEYR---------- 145 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCe-----EECCEEEEcCcHHHHHHHHHhcCC----------
Confidence 6655422 1234666788543 34455565554 334788899999888888887543
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
++++ .+||.+|+++++..++.||..+|++++++
T Consensus 146 -~~~s----------------~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ 178 (185)
T TIGR03634 146 -EDMS----------------VEEAKKLAVRAIKSAIERDVASGNGIDVA 178 (185)
T ss_pred -CCCC----------------HHHHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 2333 88999999999999999999999776543
|
This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. |
| >cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=144.66 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=117.5
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~ 223 (486)
.+|||+||++++||||||||+|++.+.++.+++++||++++ ++.++.+| +.+ ..++.+|+..++.+..+.
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999999999999999999986 56666665 222 345678888888777777
Q ss_pred ccceeeEE-Ee--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 224 TGTTIVGA-IF--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 224 ~GtTiIgI-~~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
..+..++. .+ ...++.|.|... ..+.+++.++..+ .+...+.|+|+......|++.++.
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~----~~~~~a~G~g~~~~~~~Le~~~~~------ 150 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSI----PSDFVVSGTASEQLYGMCESLWRP------ 150 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccc----cCCEEEEcccHHHHHHHHHhccCC------
Confidence 66666652 11 124566688532 3444444444311 133678899998888888875432
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 293 LNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 293 l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.+||.+|+.+|+..++.||..+|+++.+
T Consensus 151 -----~~----------------s~~ea~~l~~~~l~~~~~rd~~~~~~~~i 181 (195)
T cd03759 151 -----DM----------------EPDELFETISQALLSAVDRDALSGWGAVV 181 (195)
T ss_pred -----CC----------------CHHHHHHHHHHHHHHHHhhCcccCCceEE
Confidence 33 38999999999999999999999977654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-15 Score=141.97 Aligned_cols=156 Identities=39% Similarity=0.474 Sum_probs=115.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|++.|.++.+++++||++++ +..++.+| +.+ ..++..|+.+++.+..+..-+
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 55566665 222 345677887787777666655
Q ss_pred eeeEE-E--ec-----CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGA-I--FA-----DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI-~--~k-----dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
+.++. . +. ..++.|.|... ..+.+++.++. ...+..+.|+|+......|++.++ .
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~-----~~~~~~a~G~~~~~~~~~L~~~~~-----------~ 144 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGST-----DKLPFVTMGSGSLAAMSVLEDRYK-----------P 144 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCE-----EecCEEEEcCCHHHHHHHHHhhcC-----------C
Confidence 55542 1 11 34555678543 34455555554 346788899999888888887553 2
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.+||.+|+++++..+..||..+|+++++
T Consensus 145 ~l----------------s~~ea~~l~~~~l~~~~~rd~~~~~~~~v 175 (189)
T cd03763 145 DM----------------TEEEAKKLVCEAIEAGIFNDLGSGSNVDL 175 (189)
T ss_pred CC----------------CHHHHHHHHHHHHHHHHHhcCcCCCceEE
Confidence 33 38899999999999999999999877654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-15 Score=145.38 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=120.9
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
++++|+|+||++++||||||+|+|++.+.++.+++++||++++ ++.++.+| ..++.++.+|+++++.+.+
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999999999999999999986 66666665 2334567788888888777
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeCC-C-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADTR-A-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDtr-~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+..-+..++.. ....++.+.|.. . ..+.+++.++..+ .+..+.|+|+......|++.++.
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~-----~~~~a~G~gs~~~~~~Le~~y~~ 179 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSG-----WKATAIGNNNQAAQSLLKQDYKD 179 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeee-----eeEEEECCCcHHHHHHHHHhccC
Confidence 77666554321 123466678853 2 3555666665533 46788999999988888885533
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+.+|+..++.||..+|.++.
T Consensus 180 -----------~m----------------s~eea~~l~~~al~~~~~r~~~~~~~~e 209 (213)
T cd03752 180 -----------DM----------------TLEEALALAVKVLSKTMDSTKLTSEKLE 209 (213)
T ss_pred -----------CC----------------CHHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 33 3899999999999999988877776554
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-15 Score=142.62 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=113.9
Q ss_pred ccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHh-HhccCCCccccc
Q psy10990 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFL-ASKGYSGPTARK 223 (486)
Q Consensus 155 tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L-~~le~~~~~aV~ 223 (486)
||||+||++++||||||||+|++.|.++.+++++||++++ ++.++.+| +.+. .++.+ ++..++.+..+.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 7999999999999999999999999999999999999986 55555555 3333 33333 334566566655
Q ss_pred ccceeeEEE-e----------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 224 TGTTIVGAI-F----------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 224 ~GtTiIgI~-~----------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
..+..++.. + ...++.+.|+ . +..+.+++.++. ...+..+.|+|+......|++.++..
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~~--- 152 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTA-----YEDPHVATGFGAYLALPLLREAWEKK--- 152 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccE-----EECCEeEEccHHHHHHHHHHhhcCCC---
Confidence 555544321 1 1245566885 2 345566666654 34678888999988888888754320
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.+||.+|+.+|+..++.||..+|+++.+
T Consensus 153 ------~~m----------------s~eea~~l~~~~l~~~~~rd~~~~~~~~i 184 (197)
T cd03760 153 ------PDL----------------TEEEARALIEECMKVLYYRDARSINKYQI 184 (197)
T ss_pred ------CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceEE
Confidence 133 38999999999999999999988876543
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-15 Score=140.54 Aligned_cols=156 Identities=17% Similarity=0.044 Sum_probs=118.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| + .+..++..|+..++.+.++..-+
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 89999999999999999999999999999999999987 45566665 3 22345677788888777777666
Q ss_pred eeeEEE---e--------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGAI---F--------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI~---~--------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..++-. + ...++.|.|+ . +..+.+++.+.. ...+..+.|+|+......|++.++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~-----~~~~~~a~G~gs~~~~~~Le~~~~-------- 148 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTL-----VKVPYAAHGYGAYFCLSILDRYYK-------- 148 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcce-----EECCeeEEeecHHHHHHHHHhccC--------
Confidence 655521 1 1246667885 2 335556666655 345688999999999998888543
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.|||.+|+.+|+.....||..||+++.+
T Consensus 149 ---~~m----------------s~eeai~l~~~a~~~~~~rd~~~~~~i~i 180 (193)
T cd03758 149 ---PDM----------------TVEEALELMKKCIKELKKRFIINLPNFTV 180 (193)
T ss_pred ---CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceEE
Confidence 233 38999999999999999999999877643
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >PTZ00246 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-15 Score=146.94 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=115.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~~a 221 (486)
+++.|+|+||++++||||||||+|++.|.++.+++++||++++ ++.++.+| +.+.+ +...|+..++.+.+
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3567999999999999999999999999999999999999986 55555555 33333 34445556666655
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+..-+..++.. +...++.|.|. . +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~-----~~~~~a~G~gs~~~~~~Le~~~~~ 181 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYS-----GWKATAIGQNNQTAQSILKQEWKE 181 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEe-----cceEEEECCCcHHHHHHHHHhccC
Confidence 55443333211 12356667884 3 3366666666653 356788899998888888774433
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.|||.+|+.+|+..++.+|..+|.+++
T Consensus 182 -----------~m----------------s~eeai~l~~~al~~~~~~d~~s~~~ve 211 (253)
T PTZ00246 182 -----------DL----------------TLEQGLLLAAKVLTKSMDSTSPKADKIE 211 (253)
T ss_pred -----------CC----------------CHHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 33 3899999999999999999988887654
|
|
| >TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=141.93 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=114.5
Q ss_pred ccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccc
Q psy10990 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKT 224 (486)
Q Consensus 155 tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~ 224 (486)
+|||+||++++||||||+|+|+|.|.++.+++++||++++ +..++.+| ..++.++.+|+.+++.+..+..
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4999999999999999999999999999999999999986 55555555 2224467788888887777666
Q ss_pred cceeeEE------------EecCeEEEEEeCC---CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 225 GTTIVGA------------IFADGVVLGADTR---ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 225 GtTiIgI------------~~kdGVVlAaDtr---~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
-+..++- -+...++.|.|.. +..+.+++.+..- -..+..+.|+|+......|++.++
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~----~~~~~~a~G~g~~~a~~~Le~~~~---- 152 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRY----EERGYHAVGSGSVFAKGALKKLYS---- 152 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCee----ecCCeEEEeccHHHHHHHHHhcCC----
Confidence 5554431 1123466678853 3344555554220 123578899999988888887443
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCC
Q psy10990 290 LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341 (486)
Q Consensus 290 ~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~n 341 (486)
.++ +.+||.+|+.+|+..++.||..||+.
T Consensus 153 -------~~m----------------s~eeai~l~~~al~~~~~~d~~s~~~ 181 (219)
T TIGR03690 153 -------PDL----------------DEDDALRVAVEALYDAADDDSATGGP 181 (219)
T ss_pred -------CCc----------------CHHHHHHHHHHHHHHHHhcccccCCc
Confidence 233 38999999999999999999988864
|
Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model. |
| >cd01911 proteasome_alpha proteasome alpha subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-15 Score=141.12 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=118.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++.+|||+||++++||||||+|+|++.+ ++..++++||++++ ++.++.+| +.+ ..++.+|+..++...
T Consensus 22 ~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~ 100 (209)
T cd01911 22 EAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPI 100 (209)
T ss_pred HHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34679999999999999999999999975 66779999999986 55565665 222 345667777777766
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.+..-+..++.. +...+|.+.|.. +....+++.++.. ..+..+.|+|+......|++.++
T Consensus 101 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~ 175 (209)
T cd01911 101 PVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYF-----GYKATAIGKGSQEAKTFLEKRYK 175 (209)
T ss_pred CHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCee-----eeeEEEeCCCcHHHHHHHHHhcc
Confidence 666555555421 124677778853 3355566666553 36678899999999999988664
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.+||.+|+++++..++.||. +|.++++
T Consensus 176 ~~m---------------------------s~~ea~~l~~~~l~~~~~~d~-~~~~~~i 206 (209)
T cd01911 176 KDL---------------------------TLEEAIKLALKALKEVLEEDK-KAKNIEI 206 (209)
T ss_pred cCC---------------------------CHHHHHHHHHHHHHHHHhccC-CCCcEEE
Confidence 332 288999999999999999999 8877654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. |
| >cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-14 Score=142.38 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=117.4
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
.+++++|||+||++++||||||+|+|++ +.++.+++++||++++ ++.++.+| + .++.++.+|+..++.+
T Consensus 21 ~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (227)
T cd03750 21 LAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEP 99 (227)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 3456799999999999999999999998 6889999999999986 56666665 2 2244577888888877
Q ss_pred ccccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 220 ~aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.++..-+..++-. ....++.|.|.. +..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 100 ~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~ 174 (227)
T cd03750 100 IPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSY-----FTWKATAIGKNYSNAKTFLEKRYN 174 (227)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCE-----EeeeEEEECCCCHHHHHHHHhhcc
Confidence 7776555555411 123566678864 345566666655 345778899999888888887553
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
. ++ +.+||.+|+.+|+..++.||+ ++.+++
T Consensus 175 ~-----------~m----------------s~eeai~l~~~~l~~~~~~~l-~~~~ie 204 (227)
T cd03750 175 E-----------DL----------------ELEDAIHTAILTLKEGFEGQM-TEKNIE 204 (227)
T ss_pred C-----------CC----------------CHHHHHHHHHHHHHHHhcccC-CCCcEE
Confidence 3 33 389999999999999988876 665543
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03756 proteasome_alpha_archeal proteasome_alpha_archeal | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-14 Score=140.77 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=115.1
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
+++|||+||++++||||||+|+|++ +.++.+++++||++++ +..++.+| +.+.++..+|+..++.+..+
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 5689999999999999999999998 6788889999999986 56666666 22245677788777776666
Q ss_pred cccceeeEEE-------------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-------------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 223 ~~GtTiIgI~-------------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
..-+..++.. +...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++.++
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~~~~m 178 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYN-----EYKATAIGSGRQAVTEFLEKEYKEDM 178 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCee-----eeEEEEECCCCHHHHHHHHhhccCCC
Confidence 5444434311 1235666788643 355566666542 34578899999999999888554332
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.+||.+|+++|+..++.+|. +|+++++
T Consensus 179 ---------------------------~~~ea~~l~~~~l~~~~~~~~-~~~~~~v 206 (211)
T cd03756 179 ---------------------------SLEEAIELALKALYAALEENE-TPENVEI 206 (211)
T ss_pred ---------------------------CHHHHHHHHHHHHHHHhcccC-CCCcEEE
Confidence 288999999999999988877 8877654
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=143.14 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=111.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-----ceehhccc-----hhh----hHhHHhHhccCCC-ccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-----LIAVTVSS-----IGF----QKNAFLASKGYSG-PTA 221 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-----~~~~~~A~-----~~l----~~nl~L~~le~~~-~~a 221 (486)
|=+|||+++||||||||+|++.|.++.+ +++||+++| ++.++.|| +.+ +.++.+|++.++. +.+
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 5689999999999999999988866654 899999985 57777776 233 4568899999998 688
Q ss_pred ccccceeeEEE-------------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 222 V~~GtTiIgI~-------------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
|...+..++.. ....++.|.|. . +..+.+++.++..+..- ...+...|+ +......|
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a-~~~~~AiG~-~~~a~~~L 157 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATP-DTPFLQIGE-TKYGKPIL 157 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecC-CCceeeeCC-chhhHHHH
Confidence 87777655321 12346667884 2 34556666665422110 002234443 46666666
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
++.++ ..|+ .|||.+|+.+|+.+++.||..||++|+++
T Consensus 158 ek~yk-----------~~ms----------------~eeai~la~~al~~a~~rd~~sg~~iev~ 195 (236)
T cd03765 158 DRVIT-----------PDTS----------------LEDAAKCALVSMDSTMRSNLSVGPPLDLL 195 (236)
T ss_pred HHhcC-----------CCCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 66442 3333 89999999999999999999999988754
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-14 Score=134.89 Aligned_cols=157 Identities=28% Similarity=0.299 Sum_probs=112.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|.++|.++.+++++||++++ ++.++.+| +.+ ..++..|+..++.+..+..-+
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999987 55666665 222 334556666666665555444
Q ss_pred eeeEEE---------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI---------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~---------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-. +...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~----------- 144 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSII-----EDKYTATGSGSPYAYGVLEDEYK----------- 144 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEE-----EcCEEEEcCcHHHHHHHHHhcCC-----------
Confidence 444311 123466668863 3355566666553 34678888998888877777442
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ +.+||.+|+.+|+..++.||..+|++++++
T Consensus 145 ~~~----------------~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~ 177 (188)
T cd03764 145 EDM----------------TVEEAKKLAIRAIKSAIERDSASGDGIDVV 177 (188)
T ss_pred CCC----------------CHHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 223 388999999999999999999999876543
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-14 Score=139.12 Aligned_cols=158 Identities=23% Similarity=0.170 Sum_probs=112.4
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||+|+|++ +.++.+++++||++++ ++.++.+| +.+ .++..+|+..++.+..
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46799999999999999999999998 6788889999999986 55555555 222 3345666666666655
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+..-+..++.. +...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~~- 177 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALL-----EYKATAIGAGRQAVTEFLEKEYRE- 177 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCee-----cceEEEECCCCHHHHHHHHHhccC-
Confidence 55544444321 1234666688533 355566666553 346788999999888888875543
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+++|+..+.. |..+|++++
T Consensus 178 ----------~~----------------~~eeai~l~~~al~~~~~-d~~~~~~i~ 206 (224)
T TIGR03633 178 ----------DL----------------SLDEAIELALKALYSAVE-DKLTPENVE 206 (224)
T ss_pred ----------CC----------------CHHHHHHHHHHHHHHHhc-ccCCCCcEE
Confidence 23 289999999999999776 878876643
|
This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated. |
| >KOG0173|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-14 Score=140.68 Aligned_cols=141 Identities=30% Similarity=0.343 Sum_probs=111.8
Q ss_pred CCeEEEeecCCCCCCceeeecceeeeee------ecceehhccchhhhHhHHhHhccCCCcccccccceee--------E
Q psy10990 165 ADGVVLGADTRATDDTIVAEKNCYLLSY------SDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIV--------G 230 (486)
Q Consensus 165 ~~GVVLaaDsRAT~G~~Va~k~~~KI~~------~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiI--------g 230 (486)
-+|.|++--.+. .-+.-+.||+- +|+..++. .++.+++||++..++...|.++.+++ |
T Consensus 58 T~G~IvaDKnC~-----KIH~ia~~IyccGAGtAADte~vt~---m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG 129 (271)
T KOG0173|consen 58 TEGPIVADKNCE-----KIHFIAPNIYCCGAGTAADTEMVTR---MISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQG 129 (271)
T ss_pred cCCCeeecchhH-----HHhhcccceEEccCCchhhHHHHHH---HHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcC
Confidence 467777654442 22344455554 34444444 36789999999999999999998887 6
Q ss_pred EEecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q psy10990 231 AIFADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLR 309 (486)
Q Consensus 231 I~~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls 309 (486)
.+....|+.++|..+ +++.+.++++.+++++.. .+||+.+++.+|+++++..+.
T Consensus 130 ~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~a-----lGSGslaAmsvlEsr~k~dlt-------------------- 184 (271)
T KOG0173|consen 130 HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTA-----LGSGSLAAMSVLESRWKPDLT-------------------- 184 (271)
T ss_pred cccceeEEccccCCCCceEEEcCCCCcCccceee-----eccchHHHHHHHHHhcCcccC--------------------
Confidence 777788999999655 588888999999877654 899999999999997765554
Q ss_pred HHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 310 QMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 310 ~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+|||++||++||.|||+||++||||||+|
T Consensus 185 -------~eea~~Lv~eAi~AGi~nDLgSGsnvdlc 213 (271)
T KOG0173|consen 185 -------KEEAIKLVCEAIAAGIFNDLGSGSNVDLC 213 (271)
T ss_pred -------HHHHHHHHHHHHHhhhccccCCCCceeEE
Confidence 89999999999999999999999999988
|
|
| >cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-14 Score=135.71 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=111.3
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|++. .++.+++++||++++ ++.++.+| +.+ +++..+|+..++.+.
T Consensus 22 ~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (213)
T cd03753 22 EAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPM 100 (213)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4467999999999999999999999986 567788999999986 56666665 222 345666776677665
Q ss_pred cccccceeeEE------------------EecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 221 ARKTGTTIVGA------------------IFADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 221 aV~~GtTiIgI------------------~~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
.+..-+..++- -+...++.|.|... ..+.+++.++. ...+..+.|+|+......|+
T Consensus 101 ~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~-----~~~~~~a~G~~~~~~~~~L~ 175 (213)
T cd03753 101 TVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTF-----TRCDAKAIGSGSEGAQSSLQ 175 (213)
T ss_pred CHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCe-----ecccEEEECCCcHHHHHHHH
Confidence 55433322221 12234666788543 34555566554 23677889999998888888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+.++.+ ++ .+||.+|+++|+.....+ ..++.+++++
T Consensus 176 ~~~~~~-----------ls----------------~eeai~l~~~~l~~~~~~-~~~~~~~ei~ 211 (213)
T cd03753 176 EKYHKD-----------MT----------------LEEAEKLALSILKQVMEE-KLNSTNVELA 211 (213)
T ss_pred hhccCC-----------CC----------------HHHHHHHHHHHHHHHhcc-cCCCCcEEEE
Confidence 855432 32 899999999999886654 4666666543
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-14 Score=134.45 Aligned_cols=162 Identities=16% Similarity=0.052 Sum_probs=118.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|+|+||++++||||||+|+|++.+ .++..+||++++ ++.++.+| ..++.++.+|+.+++.+.
T Consensus 22 ~av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~ 98 (211)
T cd03749 22 EAVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPI 98 (211)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34678999999999999999999998876 357889999986 56666665 223456788888888877
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++..-+..++-. +...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 99 ~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~-----~~~~~a~G~g~~~a~~~Le~~~~~ 173 (211)
T cd03749 99 PVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYF-----EYKATSIGARSQSARTYLERHFEE 173 (211)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEe-----eeeEEEECCCcHHHHHHHHHhhcc
Confidence 776665555421 123466678853 3455566666552 356778899999999988886532
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccc-CCCCCCccc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDL-GSGSNIDLC 345 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~-gSG~nVdl~ 345 (486)
.+.+ +.+||.+|+.+++..++.+|. .++++|+++
T Consensus 174 ---------~~~m----------------s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ 208 (211)
T cd03749 174 ---------FEDC----------------SLEELIKHALRALRETLPGEQELTIKNVSIA 208 (211)
T ss_pred ---------ccCC----------------CHHHHHHHHHHHHHHHhccCCCCCCCcEEEE
Confidence 0123 388999999999999999888 888888764
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >PRK03996 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=136.15 Aligned_cols=158 Identities=22% Similarity=0.156 Sum_probs=112.6
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|++ +.++..++++||++++ ++.++.+| +.+ ..+..+|+..++.+.
T Consensus 31 ~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 109 (241)
T PRK03996 31 EAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPI 109 (241)
T ss_pred HHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999999 6788889999999987 55565665 222 345667777777666
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+..-+..++-. +...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 110 ~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~~~ 184 (241)
T PRK03996 110 GVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYL-----EYKATAIGAGRDTVMEFLEKNYKE 184 (241)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCee-----cceEEEECCCcHHHHHHHHHhccc
Confidence 655554444311 123566678853 3456666666653 346788999999999998886544
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
++ +.+||.+|+.+|+..+.. |..+|+++
T Consensus 185 ~~---------------------------s~eeai~l~~~al~~~~~-~~~~~~~i 212 (241)
T PRK03996 185 DL---------------------------SLEEAIELALKALAKANE-GKLDPENV 212 (241)
T ss_pred CC---------------------------CHHHHHHHHHHHHHHHhc-cCCCCCcE
Confidence 33 288999999999998864 44566443
|
|
| >PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-14 Score=132.47 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=112.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecc-eeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKN-CYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~-~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
+++|||+||++++||||||+|+|.|.|+.+.+++ .+||++++ ++.++.+| ..+..++..|+..++.+..
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3689999999999999999999999999998888 69999985 55556665 2223456666666665554
Q ss_pred cc----ccceee-EEEe--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHH
Q psy10990 222 RK----TGTTIV-GAIF--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 222 V~----~GtTiI-gI~~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr 285 (486)
+. .-+..+ ...+ ...++.+.|... ..+.+++.++. ... +..+.|+|+......|++.++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~-----~~~~~~~aiG~g~~~~~~~l~~~~~ 155 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSY-----IECKRFAAIGSGSQFAQPILEKLYK 155 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEE-----EEBSSEEEESTTHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccc-----ccccccccchhcchhhhHHHHhhcc
Confidence 44 111111 1111 134666788543 24445554443 234 688899999888888887552
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
. .+ +.+||.+++++++..+..+|..+|+++++
T Consensus 156 ~-----------~~----------------~~~ea~~~~~~~l~~~~~~d~~~~~~~~v 187 (190)
T PF00227_consen 156 P-----------DL----------------SLEEAIELALKALKEAIDRDILSGDNIEV 187 (190)
T ss_dssp T-----------TS----------------SHHHHHHHHHHHHHHHHHHBTTSTSEEEE
T ss_pred C-----------CC----------------CHHHHHHHHHHHHHHHHhhCCccCCeEEE
Confidence 2 23 38999999999999999999999977654
|
They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F .... |
| >cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=131.69 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=115.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|+|+||++++||||||+|+|.+. .++.+++++||++++ ++.++.+| + .++.+..+|+.+++.+.
T Consensus 22 ~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (207)
T cd03755 22 EAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPV 100 (207)
T ss_pred HHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3467899999999999999999999765 588888999999986 55565555 2 22445778888888777
Q ss_pred cccccceeeEEE---e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~---~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++..-+..++.. + ...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 101 ~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~-----~~~~~a~G~gs~~~~~~Le~~~~ 175 (207)
T cd03755 101 TVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYS-----AWKANAIGRNSKTVREFLEKNYK 175 (207)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEE-----cceEEEECCCCHHHHHHHHhhcc
Confidence 777666665411 1 13466678853 4456666666653 34668899999988888888554
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+ + +.+||.+|+.+|+..++. .|+.+++++
T Consensus 176 ~~-----------m----------------s~eeai~l~~~~l~~~~~---~~~~~~e~~ 205 (207)
T cd03755 176 EE-----------M----------------TRDDTIKLAIKALLEVVQ---SGSKNIELA 205 (207)
T ss_pred CC-----------C----------------CHHHHHHHHHHHHHHHhC---CCCCeEEEE
Confidence 33 3 389999999999998874 566666643
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd01912 proteasome_beta proteasome beta subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-13 Score=128.24 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=111.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|.+.|..+..++.+||++++ .+.++.+| ..+.+++..|+..++.+.++..-.
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999987 56666666 222345667777777666655554
Q ss_pred eeeEE-Ee--------cCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGA-IF--------ADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI-~~--------kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++- .+ ...++.|.|. .+..+.+++.++. ...+..+.|+|+......|++.++.
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~-----~~~~~~a~G~~~~~~~~~Le~~~~~--------- 146 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSL-----IEAPFVATGSGSKYAYGILDRGYKP--------- 146 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCe-----EecCEEEEcccHHHHHHHHHhccCC---------
Confidence 44431 11 1245556775 2335556666655 2355777888887777777764432
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+ +.+||.+++.+|+..+..||..+|+++++
T Consensus 147 --~~----------------s~~ea~~~~~~~l~~~~~~d~~~~~~~~v 177 (189)
T cd01912 147 --DM----------------TLEEAVELVKKAIDSAIERDLSSGGGVDV 177 (189)
T ss_pred --CC----------------CHHHHHHHHHHHHHHHHHhcCccCCcEEE
Confidence 23 38899999999999999999998876543
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd01906 proteasome_protease_HslV proteasome_protease_HslV | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-13 Score=123.25 Aligned_cols=156 Identities=25% Similarity=0.258 Sum_probs=111.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|.|.|..+..++++||++++ ++.++.+| +.+.+++..|+..++....+..-+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 45666666 222345566666666555444444
Q ss_pred eeeEEE-----------ecCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGAI-----------FADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI~-----------~kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..++-. ....++.|.|. .+..+.+++.++..+ .+..+.|+|+......|++.++.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~-----~~~~a~G~g~~~~~~~L~~~~~~------- 148 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIE-----YKATAIGSGSQYALGILEKLYKP------- 148 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEee-----ccEEEECCCcHHHHHHHHHHccC-------
Confidence 433211 12346667785 233555666665533 47788999998888888875533
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+ +.+||.+|+++++..+..+|..+|.++++
T Consensus 149 ----~~----------------s~~ea~~l~~~~l~~~~~~~~~~~~~~~i 179 (182)
T cd01906 149 ----DM----------------TLEEAIELALKALKSALERDLYSGGNIEV 179 (182)
T ss_pred ----CC----------------CHHHHHHHHHHHHHHHHcccCCCCCCEEE
Confidence 22 38899999999999999999888866543
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo |
| >cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-13 Score=129.11 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=117.1
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
++|||++|++++||||||+|+|.+.+ .+.+++.+||++++ ++.++.+| ..++.+..+|+++++.+.++.
T Consensus 27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (215)
T cd03754 27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD 105 (215)
T ss_pred cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 47999999999999999999998876 44456899999987 56666666 333456788888888888877
Q ss_pred ccceeeEEE---e----------cCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 224 TGTTIVGAI---F----------ADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 224 ~GtTiIgI~---~----------kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
.-+..++.. + ...++.|.|+ .+..+.+++.++..+ .+..+.|+|+......|++.++...
T Consensus 106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~-----~~~~a~G~gs~~~~~~Le~~~~~~~ 180 (215)
T cd03754 106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAG-----YKATAAGVKEQEATNFLEKKLKKKP 180 (215)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEe-----EEEEEECCCcHHHHHHHHHHhcccc
Confidence 776666521 1 2356667885 344666777776533 4677899999999999988654321
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.+. ++.|||.+|+.+|+..++.||.. |.+++
T Consensus 181 ---------~~~--------------~s~eeai~l~~~al~~~~~rd~~-~~~~e 211 (215)
T cd03754 181 ---------DLI--------------ESYEETVELAISCLQTVLSTDFK-ATEIE 211 (215)
T ss_pred ---------ccC--------------CCHHHHHHHHHHHHHHHhcccCC-CCcEE
Confidence 110 13899999999999999999865 65544
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-13 Score=130.64 Aligned_cols=157 Identities=18% Similarity=0.060 Sum_probs=112.0
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
.+++++|+|+||++++||||||+|+|.+. ..+..++++||++++ ++.++.+| + .+..++.+|+..++.+
T Consensus 24 ~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~ 102 (212)
T cd03751 24 NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTP 102 (212)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 34467899999999999999999999986 555567899999987 55566655 2 2244567787778777
Q ss_pred ccccccceeeEE------E-------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGA------I-------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 220 ~aV~~GtTiIgI------~-------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.++..-+..++. . +...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 103 ~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~-----~~~~~a~G~g~~~a~~~Lek~~~ 177 (212)
T cd03751 103 IPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSY-----GYFGCAIGKGKQAAKTELEKLKF 177 (212)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEE-----eeEEEEECCCCHHHHHHHHHhcc
Confidence 776666655442 1 123567778853 3456666666653 35678899999999999998554
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
. +++ .+||.+|+.+|+...+-++-.++
T Consensus 178 ~-----------dms----------------~eeai~l~~~~L~~~~~~~~~~~ 204 (212)
T cd03751 178 S-----------ELT----------------CREAVKEAAKIIYIVHDEIKDKA 204 (212)
T ss_pred C-----------CCC----------------HHHHHHHHHHHHHHHhhccCCCC
Confidence 3 333 88999999999988775443333
|
The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. |
| >COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-10 Score=101.64 Aligned_cols=169 Identities=19% Similarity=0.225 Sum_probs=126.5
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC-cH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP-RV 301 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~-~v 301 (486)
.++|+++++-++-+++|.|.+.+.+..+..++..|+.+|.. ++.++++|+++|+..|.+++..+++.|. |... ..
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~L~raa 79 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GDLFRAA 79 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---CcHHHHH
Confidence 57899999999999999999999999999888888877755 8999999999999999999999998664 1111 11
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceee--cCeE
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDT--VPFC 379 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e--~~~~ 379 (486)
-.+++.++.-.+. |-+.+-++++ |. -.++-+...|...+ .+..
T Consensus 80 velaKdwr~Dk~l-------------------------------r~LEAmllVa--d~--~~il~isG~gdV~epe~~~~ 124 (178)
T COG5405 80 VELAKDWRTDKYL-------------------------------RKLEAMLLVA--DK--THILIITGNGDVIEPEDDII 124 (178)
T ss_pred HHHHHhhhhhhHH-------------------------------HHHhhheeEe--CC--CcEEEEecCcceecCCCCeE
Confidence 1222222221111 2233334454 33 35666777777663 3499
Q ss_pred EEcCchhHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 380 TMGSGSLAAMSVFESNWKP-NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk~-dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|||||..++++..+..++. ++| |.+++.++|+.+.+-+.+++.||.|-.++
T Consensus 125 aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 125 AIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred EEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 9999999999998888763 776 88899999999988888888888887665
|
|
| >TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=113.83 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCC-Ccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYS-GPT 220 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~-~~~ 220 (486)
+++.|||+|||+++||||||+|+| +++.+||+++| +++++.+| +.+.. ....|+..++ .+.
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 457899999999999999999997 36789999986 77777776 22222 2444555555 344
Q ss_pred cccccc----eeeEEE--------ecCeEEEEEeC--C-CCcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGT----TIVGAI--------FADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~Gt----TiIgI~--------~kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~l 284 (486)
.++.-+ ..++.. ....++.+.|. . +..+.+++.++. ...+ ..+.|+|+......|++.+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~-----~~~~~~~aiG~gs~~a~~~Lek~y 169 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI-----VDERGFVVMGGTTEPIATALKESY 169 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc-----eeccceEEECCChHHHHHHHHHhc
Confidence 444332 222211 11245556763 2 345556666654 3334 6888999998888888854
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc--ccccCCCCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV--FNDLGSGSN 341 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi--~nD~gSG~n 341 (486)
+. .++ .+||.+|+.+|+..++ .+|..++.+
T Consensus 170 ~~-----------~ms----------------~eeai~la~~aL~~~~~~~r~~~~~~~ 201 (228)
T TIGR03691 170 RD-----------GLS----------------LADALGLAVQALRAGGNGEKRELDAAS 201 (228)
T ss_pred CC-----------CCC----------------HHHHHHHHHHHHHHHhccccccCCccc
Confidence 32 333 8999999999999884 444455444
|
Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup. |
| >KOG0175|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-11 Score=120.59 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=110.2
Q ss_pred ccceEEEEEe--CCeEEEeecCCCCCCceeeecceeeeee--ecceehhccchh-----hhHhHHhHhccCCCccccccc
Q psy10990 155 TGTTIVGAIF--ADGVVLGADTRATDDTIVAEKNCYLLSY--SDLIAVTVSSIG-----FQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 155 tGTTivgv~~--~~GVVLaaDsRAT~G~~Va~k~~~KI~~--~d~~~~~~A~~~-----l~~nl~L~~le~~~~~aV~~G 225 (486)
.|--||++-- .-|--+|+-+ -|.+--|.+ +.|++.++|.+. +.++++||+++++++..|..+
T Consensus 80 ~~GvivAvDSRAs~G~YIasqt---------v~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaA 150 (285)
T KOG0175|consen 80 KGGVIVAVDSRASAGSYIASQT---------VKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAA 150 (285)
T ss_pred cCcEEEEEeccccccceeechh---------hceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHH
Confidence 3446776632 3455555543 244445777 679999999844 467899999999999999999
Q ss_pred ceeeEEEe---c-----CeEEE-EEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 226 TTIVGAIF---A-----DGVVL-GADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 226 tTiIgI~~---k-----dGVVl-AaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
+.+++... + -|.++ ++|++++.-.++ +.+..| +..++++++||++.++++|++.+|
T Consensus 151 SKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYV-DseG~R---l~G~~FSVGSGs~yAYGVLDsgYr----------- 215 (285)
T KOG0175|consen 151 SKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYV-DSEGTR---LSGDLFSVGSGSTYAYGVLDSGYR----------- 215 (285)
T ss_pred HHHHHHHHhhccCcchhheeeEeeccCCCCceEEE-cCCCCE---ecCceEeecCCCceeEEeeccCCC-----------
Confidence 99997442 2 24444 588887643333 223333 678999999999999999999443
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+++ .|||.+|+|+||.++.+||.+|||.||++
T Consensus 216 ~dls----------------~eEA~~L~rrAI~hAThRDaySGG~vnly 248 (285)
T KOG0175|consen 216 YDLS----------------DEEAYDLARRAIYHATHRDAYSGGVVNLY 248 (285)
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHhcccccCceEEEE
Confidence 3443 88999999999999999999999876544
|
|
| >COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=97.09 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=139.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe---cC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhc-CCCCc
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM---AK-NIYCCGAGTAADTQVTTDLIASQLELLKLNT-GKIPR 300 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I---~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~-g~~~~ 300 (486)
+-++|++...|.|.++|+|...|. +.-...+|+|.. ++ -+..+.+|..+-.|.+.+.+.+..+...-.. -.-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 458999999999999999876553 222334555543 22 3556779999999988887776664211000 01122
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceee----
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDT---- 375 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e---- 375 (486)
+- ||.-|+-+++..-+.+|..-+.+-+ -.|.|+++++|.=.++ |.||.+.|.|++.+
T Consensus 81 m~----------------eattlvgetvrEv~~rds~~leka~--~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~e 142 (255)
T COG3484 81 MY----------------EATTLVGETVREVQARDSPALEKAG--IDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPE 142 (255)
T ss_pred HH----------------HHHHHHHHHHHHHHhccCchhhccC--cceeEEEEEcceecCCCceeEEEccCCCeeecCCC
Confidence 22 2223333333333334443332222 2377999999965544 89999999999985
Q ss_pred cCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcccc
Q psy10990 376 VPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445 (486)
Q Consensus 376 ~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI 445 (486)
.+|.-+|.. .+.+++|++.+..++.+|||.++++-++...+..+...|-++++.++.+|.++.-....|
T Consensus 143 tpf~QiGEt-KYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri 211 (255)
T COG3484 143 TPFLQIGET-KYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRI 211 (255)
T ss_pred CceeEcccc-ccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEe
Confidence 479999954 677999999999999999999999999999999999899999999999998655444433
|
|
| >KOG0179|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-09 Score=99.13 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=115.8
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-cceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-DLIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
..-|-|||||.-.|-.|+|+|||-|.|.-|-+|...||+.. |...++.+| ..+...++.|+..+.+...+
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 45788999999999999999999999999999999999995 556666665 11234577888888777777
Q ss_pred cccceeeEEEe---------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 223 KTGTTIVGAIF---------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 223 ~~GtTiIgI~~---------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
...+.+++... .-.|+.|.|..+ ..+++++-++.+|.. .-++||+..--.-.|++.+...-...
T Consensus 106 ~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~-----~~AgGsa~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT-----CRAGGSAASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred HHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeee-----eecCCcchhhhhhhhhhhccCcCccc
Confidence 77777776332 235666678643 355677777776533 22344444333333443322111100
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+..+.. ..++|+|+.|++++..+|..||.+.|.++.+|
T Consensus 181 --e~~~~~--------------~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~ 218 (235)
T KOG0179|consen 181 --ENAERT--------------PLSLERAIRLVKDAFTSAAERDIYTGDKLEIC 218 (235)
T ss_pred --ccCccc--------------ccCHHHHHHHHHHHhhhhhhcccccCCcEEEE
Confidence 111111 12489999999999999999999999876544
|
|
| >KOG0185|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=88.28 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=49.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHH
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAF 210 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~ 210 (486)
-.+.-|||+++|++|+||||+|||++.|.|+.---++++.|++.. +..++.+| |.+.+.++
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~ 101 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLE 101 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999975 44445544 55555444
|
|
| >cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-07 Score=79.91 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=76.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|.+.|..+......|+++++ ...++.++ ..+....+.|+..++.+..+..-.
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999889999999987 55555555 222344556655555443332222
Q ss_pred eeeE----E------EecCeEEEEEeCC-CCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHH
Q psy10990 227 TIVG----A------IFADGVVLGADTR-ATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 227 TiIg----I------~~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~l 284 (486)
..++ . ...+.++.+.|.. +....+.+.+.. +.. ...+.++|+......+.+.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~-----~~~~~~~~~G~~~~~~~~~l~~~~ 145 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPV-----IENPGAVATGSRSQRAKSLLEKLY 145 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCE-----eecCcEEEECCCCHHHHHHHHHHh
Confidence 2221 1 1123344445532 223333333332 223 67778888877777766644
|
N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t |
| >KOG0176|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-07 Score=85.31 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=87.2
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~ 219 (486)
.++++.|+|.+||+.++|||||+++|.|+ +..-++.++||..+| ++..+.+| ..+.. +..-|...|+++
T Consensus 28 ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~ 106 (241)
T KOG0176|consen 28 IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEP 106 (241)
T ss_pred HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCc
Confidence 34578999999999999999999999886 455568999999987 55555554 11211 244555667777
Q ss_pred ccccccceee---EEEecCe--------------EEE-EEe-CCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 220 TARKTGTTIV---GAIFADG--------------VVL-GAD-TRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 220 ~aV~~GtTiI---gI~~kdG--------------VVl-AaD-tr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
..|..-+..+ ++++-++ +++ |.| +.+.++.+++++.. +.-+.=..+||+-++-+.|
T Consensus 107 i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf-----~~~~AKAIGSgsEga~~~L 181 (241)
T KOG0176|consen 107 ISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTF-----IRYKAKAIGSGSEGAESSL 181 (241)
T ss_pred ccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCce-----EEecceeccccchHHHHHH
Confidence 7666554443 4555332 333 456 33445556665543 2233445789999998888
Q ss_pred HHHHHHHHH
Q psy10990 281 TDLIASQLE 289 (486)
Q Consensus 281 ~~~lr~~l~ 289 (486)
.+.+...+.
T Consensus 182 ~~e~~~~lt 190 (241)
T KOG0176|consen 182 QEEYHKDLT 190 (241)
T ss_pred HHHHhhccc
Confidence 886655443
|
|
| >KOG0174|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.8e-08 Score=90.53 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=92.5
Q ss_pred eeeeee------ecceehhccchhhhHhHHhHhccCCCcccccccceeeEE-Eec------CeEEE-EEeCCCC--cCee
Q psy10990 187 CYLLSY------SDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGA-IFA------DGVVL-GADTRAT--DDTI 250 (486)
Q Consensus 187 ~~KI~~------~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI-~~k------dGVVl-AaDtr~t--~g~l 250 (486)
.+||+- +|+|++++. +...+.+|.+++++++.|..+++++.. .|+ .|+++ ++|.+.. .+.+
T Consensus 57 tD~i~cCRSGSAADtQaiaD~---~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~i 133 (224)
T KOG0174|consen 57 TDNIYCCRSGSAADTQAIADI---VRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSI 133 (224)
T ss_pred cccEEEecCCchhhHHHHHHH---HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEe
Confidence 456654 688888884 677899999999999999999988853 232 25554 5887654 3334
Q ss_pred eecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy10990 251 VAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAA 330 (486)
Q Consensus 251 i~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~a 330 (486)
...+... .....+++||+..-++.++..+|.+| +.||++.++++|+..
T Consensus 134 plGG~l~-----rq~~aIgGSGStfIYGf~D~~~r~nM---------------------------t~EE~~~fvk~Av~l 181 (224)
T KOG0174|consen 134 PLGGSLT-----RQPFAIGGSGSTFIYGFCDANWRPNM---------------------------TLEECVRFVKNAVSL 181 (224)
T ss_pred ecCceEe-----ecceeeccCCceeeeeeehhhcCCCC---------------------------CHHHHHHHHHHHHHH
Confidence 4444443 35678899999999998888665444 389999999999999
Q ss_pred ccccccCCCCCCcc
Q psy10990 331 GVFNDLGSGSNIDL 344 (486)
Q Consensus 331 gi~nD~gSG~nVdl 344 (486)
+|.||..|||.|.+
T Consensus 182 Ai~rDGsSGGviR~ 195 (224)
T KOG0174|consen 182 AIERDGSSGGVIRL 195 (224)
T ss_pred HHhccCCCCCEEEE
Confidence 99999999987743
|
|
| >cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.6e-05 Score=75.14 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=70.8
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecC---eEEEEEeCCCCcCeeeecCCcceEEEecC--eEEEEecCchHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFAD---GVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQ 278 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd---GVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~ 278 (486)
.+.+++++|+++.++ .++.....+.+.++.. ..++++|.. ..+.+.+.++. +.+ .+.++|||++.+.+
T Consensus 59 ~~~~~~~~y~~~~~~-~aa~l~~~l~~~~~~~~l~a~~iv~~~~-~ly~id~~G~~-----ie~~~~~~a~GSGS~ya~g 131 (171)
T cd01913 59 RFEAKLEQYPGNLLR-AAVELAKDWRTDRYLRRLEAMLIVADKE-HTLLISGNGDV-----IEPDDGIAAIGSGGNYALA 131 (171)
T ss_pred HHHHHHHHhhchHHH-HHHHHHHHHHhccCcCceEEEEEEeCCC-cEEEECCCCCE-----eccCCCeEEEeCCHHHHHH
Confidence 357789999988764 3344433443445443 223344443 44555555554 444 59999999999999
Q ss_pred HHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 279 VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 279 vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++..++.. .|+ +.+||.+||..++.||.+||++||+
T Consensus 132 ~ld~~yk~~----------~ms-------------------~~~la~~Av~~A~~rd~~tg~~i~~ 168 (171)
T cd01913 132 AARALLDHT----------DLS-------------------AEEIARKALKIAADICIYTNHNITV 168 (171)
T ss_pred HHHHhhccC----------CCC-------------------HHHHHHHHHHHHHhhCcccCCCEEE
Confidence 999965431 122 3489999999999999999999875
|
HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis. |
| >TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.8e-05 Score=72.59 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=70.6
Q ss_pred cceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecC---eEEEEEeCCCCcCeeeecCCcceEEEecC--eEEE
Q psy10990 194 DLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFAD---GVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYC 268 (486)
Q Consensus 194 d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd---GVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~ 268 (486)
|++.++. .+.+++++|+++..+ .++......-.-.+.. ..++++|.. ..+.+.+.++. +.+ ++.+
T Consensus 52 D~q~l~~---~~~~~~~~y~~~~~~-~~a~l~~~~~~~~~~~~l~a~~iv~~~~-~ly~i~~~G~~-----ie~~~~~~a 121 (171)
T TIGR03692 52 DAFTLFE---RFEAKLEEYQGNLTR-AAVELAKDWRTDRYLRRLEAMLIVADKE-TSLLISGTGDV-----IEPEDGIAA 121 (171)
T ss_pred HHHHHHH---HHHHHHHHccCchHH-HHHHHHHHHhhcccccccEEEEEEEcCC-CEEEEcCCCcE-----eccCCCeEE
Confidence 4444444 356788899887632 2222211111122221 223344543 44555555554 443 5999
Q ss_pred EecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 269 CGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 269 ~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+|||++...+.+++.++. ..++|++||.+||..++.||.+||++||+
T Consensus 122 ~GSGS~~a~g~ld~~y~~-----------------------------~~~sa~~la~~Av~~A~~rd~~sg~~i~v 168 (171)
T TIGR03692 122 IGSGGNYALAAARALLRN-----------------------------TDLSAEEIAREALKIAADICIYTNHNITI 168 (171)
T ss_pred EeCCHHHHHHHHHHhhhc-----------------------------CCCCHHHHHHHHHHHHHhhCccCCCCEEE
Confidence 999999999999985522 12348899999999999999999998875
|
The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease. |
| >KOG0180|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=66.73 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=103.8
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-cceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-DLIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
-.|-++||+.-+++|-+|+|.|--.-+.-.+++-+|||++ |+..++.++ +.+.....||+++.++..-..
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4788999999999999999999888888888999999996 355555554 333445778888777655444
Q ss_pred ccceeeE-EEe--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhh
Q psy10990 224 TGTTIVG-AIF--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN 294 (486)
Q Consensus 224 ~GtTiIg-I~~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~ 294 (486)
.=+.+++ +.| ..-||-+.|.. .+..+..-+.---....+.+.+.++++-.-+++.+..++.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~--~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~p-------- 155 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDD--NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEP-------- 155 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCC--CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCC--------
Confidence 4445553 222 23466555542 1222221111001112356666777776666666665543
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC
Q psy10990 295 TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD 359 (486)
Q Consensus 295 ~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~ 359 (486)
++.++.|.. -..+|+.+++-||.-|| +|+..-+.+-|+
T Consensus 156 ---nmepd~LFe----------------tisQa~Lna~DRDalSG--------wGa~vyiI~kdk 193 (204)
T KOG0180|consen 156 ---NMEPDELFE----------------TISQALLNAVDRDALSG--------WGAVVYIITKDK 193 (204)
T ss_pred ---CCCHHHHHH----------------HHHHHHHhHhhhhhhcc--------CCeEEEEEccch
Confidence 344444332 23456677788899998 556665655554
|
|
| >KOG0177|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=68.66 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=55.8
Q ss_pred eEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-cee---hhccc------hhhhHhHHhHhccCCCcccccccce
Q psy10990 158 TIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIA---VTVSS------IGFQKNAFLASKGYSGPTARKTGTT 227 (486)
Q Consensus 158 Tivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~---~~~A~------~~l~~nl~L~~le~~~~~aV~~GtT 227 (486)
|++||+-.|-|||||||-++.|-.+...+-+|++.++ ... ++.+| ..+.+|+.||.++++-..+....+.
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 7999999999999999999999999999999999974 222 33333 3447899999998876555544444
Q ss_pred ee
Q psy10990 228 IV 229 (486)
Q Consensus 228 iI 229 (486)
.+
T Consensus 83 Ft 84 (200)
T KOG0177|consen 83 FT 84 (200)
T ss_pred HH
Confidence 43
|
|
| >PRK05456 ATP-dependent protease subunit HslV; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00023 Score=67.40 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=65.5
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEec----CeEEEEEeCCCCcCeeeecCCcceEEEecC--eEEEEecCchHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFA----DGVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQ 278 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~k----dGVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~ 278 (486)
+..++++|+.++. +.++.....+....+. -.+++ +|.. ..+.+++.++. +.+ +....|||+.....
T Consensus 61 l~~~~~~y~~~~~-~~~a~l~~~l~~~~~~~~l~~~~lv-~d~~-~ly~id~~G~~-----~~~~~~~~a~GSGs~~a~g 132 (172)
T PRK05456 61 FEAKLEEHQGNLL-RAAVELAKDWRTDRYLRRLEAMLIV-ADKE-HSLIISGNGDV-----IEPEDGIIAIGSGGNYALA 132 (172)
T ss_pred HHHHHHHccCccH-HHHHHHHHHHHhccCCCccEEEEEE-EcCC-cEEEECCCCcE-----eccCCCeEEEecCHHHHHH
Confidence 4667888885442 2222222222233333 23444 4542 44455555543 233 78999999999999
Q ss_pred HHHHHHH-HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 279 VTTDLIA-SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 279 vL~~~lr-~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.|++.++ .+ - ||++|+++||.+++.||.+||+++++
T Consensus 133 ~ld~~y~~~~-----------------------------m-eA~~la~kai~~A~~Rd~~sg~~i~v 169 (172)
T PRK05456 133 AARALLENTD-----------------------------L-SAEEIAEKALKIAADICIYTNHNITI 169 (172)
T ss_pred HHHHhhhcCC-----------------------------C-CHHHHHHHHHHHHHHhCeeCCCcEEE
Confidence 9998552 11 1 68899999999999999999998764
|
|
| >COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=59.97 Aligned_cols=40 Identities=25% Similarity=0.120 Sum_probs=37.7
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS 193 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~ 193 (486)
.++|||++++=+|=|++|+|...|.|+.|.-.+.+|+-.+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl 41 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRL 41 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHH
Confidence 4799999999999999999999999999999999999874
|
|
| >KOG0178|consensus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0058 Score=59.11 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=73.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHHh----HhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAFL----ASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~L----~~le~~~~~a 221 (486)
.+++--|.+|+..+|||||+++.|.|.--.=.+-..+||..++ .++...|| ..+.+++++ |...++.+.+
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3566679999999999999999999877777778889999974 66665555 223333433 3345665554
Q ss_pred ccccceeeE-EE--e----------cCeEEEEEeCCCCcCeee--ecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 222 RKTGTTIVG-AI--F----------ADGVVLGADTRATDDTIV--AEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 222 V~~GtTiIg-I~--~----------kdGVVlAaDtr~t~g~li--~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
...--+-++ ++ | -..+-.|+|.+....++. ++++.. +=+-.|.+..+.++...|.+
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~-----gWka~ciG~N~~Aa~s~Lkq 177 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYG-----GWKATCIGANSGAAQSMLKQ 177 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcc-----ccceeeeccchHHHHHHHHh
Confidence 443322221 11 0 123555788776544433 333221 11234445555555555544
|
|
| >KOG0184|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=53.89 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=48.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++-.|+|.+|++++|||||++|+--|+--|+-..| .||+.+| ++.++.|| +.+ ..+..-|+-+|+.+.+
T Consensus 30 Aven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn-~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP 108 (254)
T KOG0184|consen 30 AVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSN-ERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIP 108 (254)
T ss_pred HHhcCCcEEEEecCCeEEEEEeeeecccccccCCC-CceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34578899999999999999999888877776544 5777776 44454444 112 2235556666776665
Q ss_pred c
Q psy10990 222 R 222 (486)
Q Consensus 222 V 222 (486)
.
T Consensus 109 ~ 109 (254)
T KOG0184|consen 109 G 109 (254)
T ss_pred h
Confidence 5
|
|
| >PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0059 Score=43.81 Aligned_cols=33 Identities=45% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccCcCCCCccccCCceeeeeEEE-EEEEeeeEEE
Q psy10990 448 VKGKKDGDYRFKRGTTALLSTQR-IPIVVESEQV 480 (486)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 480 (486)
.-..+++.|+|++|||+||+|.. .++.|..|.|
T Consensus 3 ~kg~r~~~Ykf~~GTTaVL~e~V~~~~~v~eE~V 36 (38)
T PF12465_consen 3 EKGERQGSYKFKRGTTAVLKEKVPLKLDVVEETV 36 (38)
T ss_dssp -----SS-----TT-S-EEEEEEE----------
T ss_pred cCcccccccccCCCceeeEEEEeccEeEEEEEEE
Confidence 44567899999999999999999 5565655543
|
This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V .... |
| >PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.61 Score=44.95 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+.+...|+++|++.|+++++..+..++|+.+.......+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 66778999999999999999999999999987776666788888877654
|
They do show distant similarity to NTPases and to nucleic acid binding enzymes. |
| >KOG0863|consensus | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.3 Score=48.19 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=72.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHH----hHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAF----LASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~----L~~le~~~~~ 220 (486)
++++.|.++||++-+.-.||.|=.|+... .+..-+||+++| ++.++.|| ..++++++ -++.-++++.
T Consensus 27 EavkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~ 103 (264)
T KOG0863|consen 27 EAVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPL 103 (264)
T ss_pred HHHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcc
Confidence 34688999999999999999998887654 234568999997 55555555 33444443 3334455555
Q ss_pred cccccceeeEEEec------------Ce-EEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIFA------------DG-VVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~GtTiIgI~~k------------dG-VVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
+|..-..-++-+.. =| .|.+.|..++ ..-.-+.+++ .+-+-...||-+.++--+|++.+
T Consensus 104 pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v-----~e~~g~sIGsRSQsARTyLEr~~ 176 (264)
T KOG0863|consen 104 PVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNV-----FECKGMSIGSRSQSARTYLERNL 176 (264)
T ss_pred cHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccE-----EEEeeeecccchhhHHHHHHHHH
Confidence 55544444432211 13 4445776543 2222233322 22233445666666666666643
|
|
| >KOG0183|consensus | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.066 Score=52.14 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=58.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc----hhh-h----HhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS----IGF-Q----KNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~----~~l-~----~nl~L~~le~~~~~ 220 (486)
++++.|+|.||++-++.||||.+++ |-...--+++.+||..+| +..++-|| ..+ . -++.-|++..+.|.
T Consensus 25 EAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpv 103 (249)
T KOG0183|consen 25 EAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPV 103 (249)
T ss_pred HHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCc
Confidence 3468999999999999999999997 556677778899999998 77777766 111 1 13556667777777
Q ss_pred cccccceeeE
Q psy10990 221 ARKTGTTIVG 230 (486)
Q Consensus 221 aV~~GtTiIg 230 (486)
++.--+..|+
T Consensus 104 tveyitRyiA 113 (249)
T KOG0183|consen 104 TVEYITRYIA 113 (249)
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
|
| >COG4079 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=16 Score=36.66 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=42.7
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+.+..+|.+.|.+.++++++.++...+|..+...-...+..+++..++++
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45667888999999999999999999999988676677788999988764
|
|
| >PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly) | Back alignment and domain information |
|---|
Probab=80.68 E-value=1.8 Score=42.25 Aligned_cols=47 Identities=34% Similarity=0.651 Sum_probs=41.9
Q ss_pred hhhhhhhhccccceeEEEeecccchhhhhhhhhhhhHHHHHHHHHhhcc
Q psy10990 70 VKFFLLELRDRKFKFEIFRLFSLDFDTFLSYKMMGFISTYIVILIQESY 118 (486)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (486)
++.|++.+..++.+|-...+|.+|+..++ ++.+.+.+|++||+|=..
T Consensus 324 l~~f~~ql~~~~~~~ta~g~f~ld~~ll~--~~~~~i~TYliILiQF~~ 370 (372)
T PF08395_consen 324 LELFSLQLQHQPLKFTACGFFDLDRSLLF--SIIGAITTYLIILIQFDI 370 (372)
T ss_pred HHHHHHHHHhcCCceEEeeEEEECHHHHH--HHHHHHHHHHHhhhheec
Confidence 67889999999999999999999988775 689999999999999543
|
They are classified as G-protein-coupled receptors (GPCRs), or seven-transmembrane receptors. They show high sequence divergence, consistent with an ancient origin for the family [, ]. ; GO: 0050909 sensory perception of taste, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 486 | ||||
| 3unb_H | 234 | Mouse Constitutive 20s Proteasome In Complex With P | 1e-82 | ||
| 1iru_I | 234 | Crystal Structure Of The Mammalian 20s Proteasome A | 2e-82 | ||
| 3nzj_H | 261 | Crystal Structure Of Yeast 20s Proteasome In Comple | 5e-68 | ||
| 1fnt_I | 232 | Crystal Structure Of The 20s Proteasome From Yeast | 8e-62 | ||
| 3unf_H | 234 | Mouse 20s Immunoproteasome In Complex With Pr-957 L | 1e-61 | ||
| 1ryp_I | 222 | Crystal Structure Of The 20s Proteasome From Yeast | 5e-61 | ||
| 1iru_H | 205 | Crystal Structure Of The Mammalian 20s Proteasome A | 8e-20 | ||
| 3unb_N | 205 | Mouse Constitutive 20s Proteasome In Complex With P | 8e-20 | ||
| 3nzj_N | 215 | Crystal Structure Of Yeast 20s Proteasome In Comple | 7e-19 | ||
| 1ryp_H | 205 | Crystal Structure Of The 20s Proteasome From Yeast | 2e-18 | ||
| 1g65_N | 196 | Crystal Structure Of Epoxomicin:20s Proteasome Reve | 3e-18 | ||
| 1vsy_H | 196 | Proteasome Activator Complex Length = 196 | 9e-18 | ||
| 3unf_N | 199 | Mouse 20s Immunoproteasome In Complex With Pr-957 L | 3e-15 | ||
| 3h4p_a | 219 | Proteasome 20s Core Particle From Methanocaldococcu | 6e-15 | ||
| 1j2q_H | 202 | 20s Proteasome In Complex With Calpain-inhibitor I | 1e-13 | ||
| 1ya7_H | 217 | Implications For Interactions Of Proteasome With Pa | 5e-12 | ||
| 1pma_B | 211 | Proteasome From Thermoplasma Acidophilum Length = 2 | 5e-12 | ||
| 3unb_K | 205 | Mouse Constitutive 20s Proteasome In Complex With P | 3e-11 | ||
| 1iru_L | 204 | Crystal Structure Of The Mammalian 20s Proteasome A | 4e-11 | ||
| 3c91_H | 203 | Thermoplasma Acidophilum 20s Proteasome With An Ope | 8e-11 | ||
| 3unf_K | 204 | Mouse 20s Immunoproteasome In Complex With Pr-957 L | 2e-10 | ||
| 3nzj_K | 287 | Crystal Structure Of Yeast 20s Proteasome In Comple | 5e-09 | ||
| 4b4t_5 | 287 | Near-Atomic Resolution Structural Model Of The Yeas | 9e-09 | ||
| 1g0u_K | 212 | A Gated Channel Into The Proteasome Core Particle L | 3e-08 | ||
| 1ryp_L | 212 | Crystal Structure Of The 20s Proteasome From Yeast | 5e-08 | ||
| 3jrm_A | 227 | Crystal Structure Of Archaeal 20s Proteasome In Com | 2e-07 | ||
| 1yar_A | 233 | Structure Of Archeabacterial 20s Proteasome Mutant | 3e-07 | ||
| 1pma_A | 233 | Proteasome From Thermoplasma Acidophilum Length = 2 | 3e-07 | ||
| 1yau_A | 233 | Structure Of Archeabacterial 20s Proteasome- Pa26 C | 3e-07 | ||
| 2ku1_A | 237 | Dynamic Regulation Of Archaeal Proteasome Gate Open | 3e-07 | ||
| 2ku2_A | 237 | Dynamic Regulation Of Archaeal Proteasome Gate Open | 3e-07 | ||
| 3h4p_A | 264 | Proteasome 20s Core Particle From Methanocaldococcu | 4e-07 | ||
| 1vsy_E | 250 | Proteasome Activator Complex Length = 250 | 2e-05 | ||
| 4g4s_E | 261 | Structure Of Proteasome-Pba1-Pba2 Complex Length = | 2e-05 | ||
| 1fnt_E | 260 | Crystal Structure Of The 20s Proteasome From Yeast | 2e-05 | ||
| 2z5c_C | 262 | Crystal Structure Of A Novel Chaperone Complex For | 3e-05 | ||
| 1ryp_E | 242 | Crystal Structure Of The 20s Proteasome From Yeast | 3e-05 | ||
| 3unb_D | 241 | Mouse Constitutive 20s Proteasome In Complex With P | 4e-05 | ||
| 1iru_E | 241 | Crystal Structure Of The Mammalian 20s Proteasome A | 4e-05 | ||
| 1g0u_D | 241 | A Gated Channel Into The Proteasome Core Particle L | 3e-04 |
| >pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234 | Back alignment and structure |
|
| >pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234 | Back alignment and structure |
|
| >pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261 | Back alignment and structure |
|
| >pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 232 | Back alignment and structure |
|
| >pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234 | Back alignment and structure |
|
| >pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222 | Back alignment and structure |
|
| >pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205 | Back alignment and structure |
|
| >pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 | Back alignment and structure |
|
| >pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215 | Back alignment and structure |
|
| >pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205 | Back alignment and structure |
|
| >pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196 | Back alignment and structure |
|
| >pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196 | Back alignment and structure |
|
| >pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199 | Back alignment and structure |
|
| >pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219 | Back alignment and structure |
|
| >pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 | Back alignment and structure |
|
| >pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 | Back alignment and structure |
|
| >pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 | Back alignment and structure |
|
| >pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 | Back alignment and structure |
|
| >pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204 | Back alignment and structure |
|
| >pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 | Back alignment and structure |
|
| >pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204 | Back alignment and structure |
|
| >pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287 | Back alignment and structure |
|
| >pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287 | Back alignment and structure |
|
| >pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212 | Back alignment and structure |
|
| >pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212 | Back alignment and structure |
|
| >pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227 | Back alignment and structure |
|
| >pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233 | Back alignment and structure |
|
| >pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233 | Back alignment and structure |
|
| >pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233 | Back alignment and structure |
|
| >pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 | Back alignment and structure |
|
| >pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 | Back alignment and structure |
|
| >pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264 | Back alignment and structure |
|
| >pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250 | Back alignment and structure |
|
| >pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261 | Back alignment and structure |
|
| >pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260 | Back alignment and structure |
|
| >pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262 | Back alignment and structure |
|
| >pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242 | Back alignment and structure |
|
| >pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 241 | Back alignment and structure |
|
| >pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 241 | Back alignment and structure |
|
| >pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 | Back alignment and structure |
|---|
Score = 315 bits (809), Expect = e-106
Identities = 130/278 (46%), Positives = 179/278 (64%), Gaps = 31/278 (11%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
+Q+N FLA ++ P A TGTTIVG F +GVV+ ADTR+T IVA+KNC K+H ++
Sbjct: 9 YQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP 68
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
I+C GAGTAADT+ T LI S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 69 KIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-------- 120
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSG
Sbjct: 121 ---------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443
SLAAM+V ES+WK ++T+EE KL DAI AG++NDLGSGSN+D+CV++ EYLR Y
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIV-VESEQV 480
NV+ +K Y+F RGTTA+L + I ++ EQV
Sbjct: 220 LTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEEQV 257
|
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = e-101
Identities = 114/251 (45%), Positives = 159/251 (63%), Gaps = 29/251 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A IYCCGAG AADT++TT + A
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQ----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GHV A+LV+GGVD G L+ ++PHGS +PF +GSG AA+++ E ++PNMT E
Sbjct: 92 GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
++L+ +AI AG+ +DLGSG N+D CVI G + R ++ G YRF GTT +
Sbjct: 152 QELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTTPV 211
Query: 466 LSTQRIPIVVE 476
L+ + P+ +E
Sbjct: 212 LTREVRPLTLE 222
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = e-101
Identities = 143/251 (56%), Positives = 186/251 (74%), Gaps = 29/251 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+++ NIYCCGAGTAADT +TT LI+
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S LEL L+TG++PRV+TANR+L+QMLFRY+
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 92 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LRPY + N KG + G YR ++GTTA+
Sbjct: 152 KNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211
Query: 466 LSTQRIPIVVE 476
L+ + P+ +E
Sbjct: 212 LTEKITPLEIE 222
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 3e-97
Identities = 118/250 (47%), Positives = 161/250 (64%), Gaps = 30/250 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG F +GVV+ ADTR+T IVA+KNC K+H ++ I+C GAGTAADT+ T LI
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQ----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSGSLAAM+V ES+WK ++T+EE
Sbjct: 92 GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGDYRFKRGTTA 464
KL DAI AG++NDLGSGSN+D+CV++ EYLR Y NV+ +K Y+F RGTTA
Sbjct: 152 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211
Query: 465 LLSTQRIPIV 474
+L + I
Sbjct: 212 VLKESIVNIC 221
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVS 201
TTIVG F +GVV+ ADTR+T IVA+KNC L S I +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGA 46
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 5e-90
Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 31/292 (10%)
Query: 171 GADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVG 230
+ D + L+ S + S F + S+ GTT +
Sbjct: 21 DNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLA 80
Query: 231 AIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290
F G+++ D+RAT VA + +K+ + + AG AAD Q + SQ L
Sbjct: 81 FRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRL 140
Query: 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSA 350
+L + V A+++L ++++Y+ G
Sbjct: 141 HELREKERISVAAASKILSNLVYQYKGA---------------------------GLSMG 173
Query: 351 ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVR 410
++ G G ++ + G+ +GSG A V +SN+K +++ E+ L +
Sbjct: 174 TMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGK 233
Query: 411 DAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGT 462
+I A D SG +++L + ++G Y +++ + K + + G+
Sbjct: 234 RSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK----VKEEEGS 281
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
S+ GTT + F G+++ D+RAT VA +
Sbjct: 58 AHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTV 106
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 3e-85
Identities = 48/237 (20%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F G+++ D+RAT VA + +++ + + AG AAD Q +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
SQ L +L + V A+++L ++++Y+
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGA--------------------------- 93
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G ++ G G ++ + G+ +GSG A V +SN+K +++ E+
Sbjct: 94 GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 153
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGT 462
L + +I A D SG +++L + ++G Y +++ + K + + G+
Sbjct: 154 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK----VKEEEGS 206
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-08
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT + F G+++ D+RAT VA +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTV 31
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 8e-85
Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F GV++ AD+RAT +A + +K+ + + AG AAD L+A
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
Q + +L + V A++LL M+++Y+ G G
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYK--------------------GMG------ 94
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S ++ G D G L+ + G+ + ++GSGS+ A V + + ++ E+
Sbjct: 95 --LSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQA 152
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451
L R AI + D SG ++L ++++G + +A++ K
Sbjct: 153 YDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT + F GV++ AD+RAT +A +
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTV 31
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 5e-84
Identities = 11/246 (4%), Positives = 28/246 (11%), Gaps = 32/246 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
+ + + E + + I
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+I + A R
Sbjct: 62 LVKIRSIEKIFQIDDHVAAATSGLVADARVLI---------------------------- 93
Query: 346 GHVSAALVLGGVD-DTGAHLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+ + + + G + K
Sbjct: 94 DRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLF 153
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTT 463
E G ++L + L +
Sbjct: 154 ETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAI--TALTKANEDIKPE 211
Query: 464 ALLSTQ 469
+
Sbjct: 212 NVDVCI 217
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 1/31 (3%), Positives = 4/31 (12%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
+ + + E
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAR 32
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 9e-84
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 29/227 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT VG + DGVV+ + RAT +A K +KI+ +A + AG+ D Q +I
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ L ++ + P V L +L Y+
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYRY---------------------------- 92
Query: 346 GHVSAALVLGGVDDTGAHLFNIYP-HGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
L++GG+D G +++I P G+ + GSGSL A V E + P + +E
Sbjct: 93 FPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE 152
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451
+L AI + + D SG ID+ I ++ P E+ + K
Sbjct: 153 AVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT VG + DGVV+ + RAT +A K
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAA 31
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 2e-83
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ F GVV+G+D+R + T V + K+ + + I+C +G+AAD Q D+ A
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
QLEL L + P V+ A +++ + ++Y+
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+ A L++ G D G PF GSGS ++ +KP MT EEC
Sbjct: 92 EDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEEC 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LRPYEIANV 448
++ +AI + D SG I L I GV++ + E+
Sbjct: 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKF 196
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-08
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ F GVV+G+D+R + T V +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVF 31
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 5e-83
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
G +I+ F DGV+LGAD+R T +A + K+ + I+CC +G+AADTQ D
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ LEL G P TA + +++ + +
Sbjct: 67 IVQYHLELYTSQYGT-PSTETAASVFKELCYENK-------------------------- 99
Query: 343 DLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+++A +++ G DD ++ I GS +P+ GSGS + N++ NM+
Sbjct: 100 ---DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
+EE ++ +++ + D SG I + V+ GVE L Y
Sbjct: 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY 198
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G +I+ F DGV+LGAD+R T +A +
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVT 40
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 7e-82
Identities = 39/228 (17%), Positives = 79/228 (34%), Gaps = 29/228 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++G F GVV+ AD + ++ +N +I + + +G AD Q
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
Query: 283 LIASQLELLKL-NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341
++ + +L G + L + ++ + +
Sbjct: 66 VLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKM---------------------- 103
Query: 342 IDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESN--WKPN 399
+ +V+GG D + L + G + P G G+ A + +P
Sbjct: 104 ----NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
+++ E + LV + + D S + + + GVE P
Sbjct: 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++G F GVV+ AD + ++ +N
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI 39
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 8e-82
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ F GVVLGAD+R T + +A + K+ + I+CC +G+AADTQ D +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
QL + + P V TA L ++M +RY+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A +++ G D G ++++ G F GSGS ++ ++ MT+EE
Sbjct: 92 EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEE 151
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE--YLRPYEIAN 447
C + +A+A + D SG I L I ++GVE L +I
Sbjct: 152 CLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPK 196
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ F GVVLGAD+R T + +A +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVT 31
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 | Back alignment and structure |
|---|
Score = 250 bits (642), Expect = 2e-81
Identities = 62/231 (26%), Positives = 93/231 (40%), Gaps = 30/231 (12%)
Query: 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQ 278
+TGTT VG D V++ + R T + + KN +K+ + AG D Q
Sbjct: 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 279 VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS 338
V + ++LEL +L + LL ML + +
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMP------------------- 102
Query: 339 GSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP 398
L++GG+ DT H+F+I G S + + GSGS V ES +
Sbjct: 103 ---------YMVQLLVGGI-DTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE 152
Query: 399 NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIANV 448
MT +E LV AI+A D SG ID+ VI +K+G L +I +
Sbjct: 153 KMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESR 203
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
+TGTT VG D V++ + R T + + KN
Sbjct: 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNG 39
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 1e-79
Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 28/222 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
I+G D V+L + T V + + K ++ + AG A DT + I
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ ++L + + +RQ L + + S
Sbjct: 62 ANIQLYSIREDYELSPQAVSSFVRQELAKS--------------------IRSR------ 95
Query: 346 GHVSAALVLGGVD--DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+++GG D L+ I G+ +P+ G S+ + +++P+MT E
Sbjct: 96 RPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
E L++ + + + ++ K+G+ + ++
Sbjct: 156 EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQA 197
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-07
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
I+G D V+L + T V + +
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSD 32
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 6e-79
Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
++G D V++ +D A + + + + K+ M++ I G A DT + I
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQML---FRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++L K+ G A R+ L R +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSR-------------------------- 95
Query: 343 DLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
L+L G D+ G L+ + + PF G G+ +S+ + + P ++
Sbjct: 96 ---TPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTIS 152
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
E +L+R + + + + +I KNG+ L
Sbjct: 153 RERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK 198
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
++G D V++ +D A + + + +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDH 32
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 | Back alignment and structure |
|---|
Score = 238 bits (611), Expect = 4e-77
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 37/233 (15%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G ++ + V + AD R + + QKI M +Y AG A D Q
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
+ +L L +L G+ + T ++ +L+ +
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-------------------------- 100
Query: 344 LCGHVSAALVLGGVDDTGA--HLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWKPNM 400
G V+ G+D + ++ G T F G+ + + ES W+PNM
Sbjct: 101 --GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNM 158
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
+ + + A+ V D SG + + +I+K+ + +K + D
Sbjct: 159 DPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI------TTRTLKARMD 205
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G ++ + V + AD R + +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDF 39
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 9e-77
Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 44/241 (18%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
G TI+ D ++ +DTR ++ + ++ K + + +G D T
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+I ++L++ K + K +L +L+ +
Sbjct: 67 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF------------------------- 101
Query: 343 DLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESN------ 395
++GG+D+ G +++ P GS F GS S + ++
Sbjct: 102 ---FPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM 158
Query: 396 ---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKK 452
++ + +LV+D + D+ +G + +C++ K G+ V +K
Sbjct: 159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI------REETVSLRK 212
Query: 453 D 453
D
Sbjct: 213 D 213
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G TI+ D ++ +DTR ++ + ++
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDS 40
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 | Back alignment and structure |
|---|
Score = 239 bits (610), Expect = 1e-75
Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 41/279 (14%)
Query: 201 SSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIH 260
+ IG + ++ G GTTIV + GV+L D RAT ++A ++ + ++
Sbjct: 41 NRIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVY 100
Query: 261 YMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEEC 320
+ AGTA L A +LE + G L M+
Sbjct: 101 VTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA-- 158
Query: 321 KKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD------DTGAHLFNIYPHGS-- 372
++ +L G D + + G
Sbjct: 159 -----------------------AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRY 195
Query: 373 SDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSG-------S 425
+ + +GSGSL A S + + P+ EE + +++ +D +G
Sbjct: 196 EERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGI 255
Query: 426 NIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTA 464
I + G ++ + + ++ R ++G +A
Sbjct: 256 YPTAVTITQAGAVHVSEETTSEL-ARRIVAERTEQGGSA 293
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIA 197
++ G GTTIV + GV+L D RAT ++A ++ + + A
Sbjct: 48 HSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSA 107
Query: 198 VTVS 201
++
Sbjct: 108 AGIA 111
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 6e-73
Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 41/254 (16%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIV + GV+L D RAT ++A ++ +K++ + AGTA L A
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+LE + G L M+
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGA-------------------------AM 95
Query: 346 GHVSAALVLGGVD------DTGAHLFNIYPHGS--SDTVPFCTMGSGSLAAMSVFESNWK 397
++ +L G D + + G + + +GSGSL A S + +
Sbjct: 96 QGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 155
Query: 398 PNMTEEECKKLVRDAIAAGVFNDLGSG-------SNIDLCVIKKNGVEYLRPYEIANVKG 450
P+ EE + +++ +D +G I + G ++ + +
Sbjct: 156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSEL-A 214
Query: 451 KKDGDYRFKRGTTA 464
++ R ++G +A
Sbjct: 215 RRIVAERTEQGGSA 228
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 5e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIV + GV+L D RAT ++A ++
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDV 31
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 1e-70
Identities = 38/239 (15%), Positives = 87/239 (36%), Gaps = 38/239 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++ + +GV++ AD + +++ +++ + N +G +D Q
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 65
Query: 283 LIASQLELLKLN-----TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
L+ + + + L ++++ + + N L
Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSK--------------MNPL- 110
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAH-LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
A+++ GV G L + G + + P G G+ A +
Sbjct: 111 -----------WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159
Query: 397 K-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVK 449
P T + ++ + +A+ + D S N L +I KN G+ + + ++ N+K
Sbjct: 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 218
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++ + +GV++ AD + +++
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV 39
|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-69
Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 53/249 (21%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G TI+G D VL DTR D + + K+ NI G AAD
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 284 IASQLELLKLN-TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ ++ + K + +A R ++ +L+ +
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRF------------------------- 102
Query: 343 DLCGHVSAALVLGGVDDTGA-HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK---- 397
++ G+D+ G +++ P GS + G+ + M ++
Sbjct: 103 ---FPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159
Query: 398 -------------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444
++ EE KLVRD+ + + G +++ ++ K+GV
Sbjct: 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV------R 213
Query: 445 IANVKGKKD 453
+ K+D
Sbjct: 214 KEFYELKRD 222
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 1e-68
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 38/239 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++ + +GV++ AD + +++ +++ + N +G +D Q
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 98
Query: 283 LIASQLELLKLN-----TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
L+ + + + L ++++ + N L
Sbjct: 99 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRR--------------SKMNPL- 143
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAH-LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
A+++ GV G L + G + + P G G+ A +
Sbjct: 144 -----------WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 192
Query: 397 K-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVK 449
P T + ++ + +A+ + D S N L +I KN G+ + + ++ N+K
Sbjct: 193 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 251
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++ + +GV++ AD + +++
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV 72
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 4e-66
Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 38/233 (16%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G +V D V + D R ++ +KI + +++ G A D ++
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
+ L KL + T +L+ L+ +
Sbjct: 66 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-------------------------- 99
Query: 344 LCGHVSAALVLGGVDDTGA--HLFNIYPHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNM 400
G V+ G++ + G D F G+ S + ES ++PN+
Sbjct: 100 --GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNL 157
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
E+ + + A+ D SG + +IKK+ V +K ++D
Sbjct: 158 EPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEV------VKRYLKMRQD 204
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
G +V D V + D R ++ + + + + ++
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGIT 53
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 5e-66
Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 48/251 (19%)
Query: 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAAD 276
G GTTIV + GVV+ D R+T +++ ++ +K++ AGTAA
Sbjct: 49 GGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAV 108
Query: 277 TQVTTDLIASQLELLKLNTGKIPRVITANRLL----RQMLFRYQEEECKKLVRDAIAAGV 332
L A +LE + G L R L
Sbjct: 109 AVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAM---------------- 152
Query: 333 FNDLGSGSNIDLCGHVSAALVLGGVD------DTGAHLFNIYPHG--SSDTVPFCTMGSG 384
+ A +L G D + + + G + + + +GSG
Sbjct: 153 -------------QGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG 199
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDL-------CVIKKNGV 437
SL A S + + + ++ +A+ +D +G + +I +G
Sbjct: 200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA 259
Query: 438 EYLRPYEIANV 448
+ IA +
Sbjct: 260 VDVPESRIAEL 270
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 148 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVS 201
G GTTIV + GVV+ D R+T +++ ++ + D A ++
Sbjct: 49 GGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIA 103
|
| >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 33/221 (14%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
G ++V F DGV+ A+ +T K+ + + G + +
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENL 74
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
++ + + R L + + +
Sbjct: 75 RRAGIVHADMRGYSYDRRDVTG---RSLANAYAQTLGTIFTEQPKP-------------- 117
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNWKPN 399
+ A V L+ I GS D F MG + + +++ +
Sbjct: 118 ---YEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRAD 174
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSG----SNIDLCVIKKNG 436
+ E + +A+ G + +++++ V+ ++
Sbjct: 175 LDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSR 215
|
| >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 2e-29
Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 35/225 (15%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
++V +A GV+ A+ + QKI + + AG +
Sbjct: 23 GIARAKSVVALAYAGGVLFVAENPSRS--------LQKISELYDRVGFAAAGKFNEFDN- 73
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
L ++ R R L + + + +
Sbjct: 74 --LRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCV------- 124
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNWKPN 399
A V + L+ I GS +D F MG + + + ++ N
Sbjct: 125 ----------AEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAEN 174
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSG------SNIDLCVIKKNGVE 438
+ + ++ A+ AG + G +++++ V+ N
Sbjct: 175 ASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPR 219
|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 2e-17
Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 39/195 (20%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLI 284
TTIV VV+G D + + V + N +K+ + + AG AD +L
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+LE+ + + K + + + L + +
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLE---------------------------- 92
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A + TG +GSG A+S TE
Sbjct: 93 -AMLIVADEKESLIITGIGDVVQPEED-----QILAIGSGGNYALSAAR--ALVENTELS 144
Query: 405 CKKLVRDA--IAAGV 417
++V + IA +
Sbjct: 145 AHEIVEKSLRIAGDI 159
|
| >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-16
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 56/241 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A G VG A+GVVL + + K+ + K+I +G D +V
Sbjct: 27 AVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV-HKVEPITKHIGLVYSGMGPDYRVL 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
R + + +E +LV+
Sbjct: 86 VH---------------RARKLAQQ-------YYLVYQEPIPTAQLVQR----------- 112
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ + +L++ G ++ +LF P G+ MG
Sbjct: 113 ------VASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNY 166
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
+ + E + ++ E+ + + NI++ + + G L P E+
Sbjct: 167 VNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE-DNIEVGICNEAGFRRLTPTEV 225
Query: 446 A 446
Sbjct: 226 K 226
|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 1e-15
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 41/213 (19%)
Query: 225 GTTIVGAIFADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCG-AGTAADTQVTTD 282
TTI + D + T +V + +K+ + G AG+ AD +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++LE N + + ++L + + + +
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLE-----------------------AML 101
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+ + LV G + I P +GSG A++ + K
Sbjct: 102 IVMNQDTLLLVSGTGE-------VIEPDD-----GILAIGSGGNYALAAGRALKKHAGES 149
Query: 403 EECKKLVRDA--IAAGVFNDLGSGSNIDLCVIK 433
++ R A A + + + I L ++
Sbjct: 150 MSASEIARAALETAGEI--CVYTNDQIILEELE 180
|
| >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 5e-15
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 36/236 (15%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G ++GV L + R T + +KI + +I C +G AD +
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI-EKIVEIDAHIGCAMSGLIADAKT- 87
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIA--AGVFNDLG 337
LI RV T N F Y E + + + A++ A F +
Sbjct: 88 --LI------------DKARVETQNHW-----FTYNETMTVESVTQ-AVSNLALQFGEED 127
Query: 338 SGSNIDL--CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPF--CTMGSGSLAAMSVFE 393
+ G AL+ GGVD+ G LF++ P G+ V +GS S A S +
Sbjct: 128 ADPGAMSRPFG---VALLFGGVDEKGPQLFHMDPSGTF--VQCDARAIGSASEGAQSSLQ 182
Query: 394 SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANV 448
+ +MT +E K + + L + +NI+L ++ E+ V
Sbjct: 183 ELYHKSMTLKEAIKSSLIILKQVMEEKLNA-TNIELATVQPGQNFHMFTKEELEEV 237
|
| >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G FA+GV+L +D + I +KI + + +G AD +V
Sbjct: 30 AVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDDYVAAVTSGLVADARVL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
D R+ + + LV+
Sbjct: 89 VD---------------FARISAQQ-------EKVTYGSLVNIENLVKR----------- 115
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ + +L+ G+D G LF+ P G+ + +GSG
Sbjct: 116 ------VADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGK 169
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
A +S E +K N+ E+E L A+ + + ++ I
Sbjct: 170 DAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN 219
|
| >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 55/242 (22%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GV+L AD R + + +KI+ + ++I +G AD +V
Sbjct: 30 AVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI-EKIYKIDEHICAATSGLVADARVL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDLGSG 339
D R+ Y K+L +
Sbjct: 89 ID---------------RARIEAQINR-----LTYDIPITVKELAKK------------- 115
Query: 340 SNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLA 387
+C +L++ GV++ L+ P G+ +G G +A
Sbjct: 116 ----ICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMA 170
Query: 388 AMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLRPYEI 445
FE ++ +++ ++ L A+ + ++L NI++ +K + + P E+
Sbjct: 171 VTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSPEEL 229
Query: 446 AN 447
Sbjct: 230 KP 231
|
| >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 51/239 (21%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
+ T +G + +DG+VL A+ + T + + + +K++ + I AG AD ++
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI- 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDLGSG 339
LI R+ N L Y E+ + LVR
Sbjct: 86 --LI------------NTARIHAQN-----YLKTYNEDIPVEILVRR------------- 113
Query: 340 SNIDLCGHVSA------------ALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSL 386
L + + G DD G L+ P G+ ++G+ +
Sbjct: 114 ----LSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTS 169
Query: 387 AAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
AA ++ + ++K +M ++ +L ++ + + ++ I+K + +I
Sbjct: 170 AAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 228
|
| >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 5e-14
Identities = 47/245 (19%), Positives = 75/245 (30%), Gaps = 58/245 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + +T +G DGVV G + N +++ + +++ AG AD +
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN-KRLFNVDRHVGMAVAGLLADARSL 87
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
D I R +N FR K L
Sbjct: 88 AD---------------IAREEASN-------FRSNFGYNIPLKHLADR----------- 114
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384
+ +V A + +LG + GA L+ I P G S C +G
Sbjct: 115 ------VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKA 168
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLRP 442
AA + E MT + K V I ++L + + NG + P
Sbjct: 169 RQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 228
Query: 443 YEIAN 447
+I
Sbjct: 229 KDIRE 233
|
| >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 34/235 (14%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G +GVVLG + RAT + ++ +KI + ++I C +G AD +
Sbjct: 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI-EKIVEIDRHIGCAMSGLTADARSM 80
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIA--AGVFNDLG 337
+ R Y E+ + L + ++ A F +
Sbjct: 81 IE---------------HARTAAVTHN-----LYYDEDINVESLTQ-SVCDLALRFGEGA 119
Query: 338 SGSNIDLC---GHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFE 393
SG + G AL++ G D D G LF+ P G+ +GSGS A +
Sbjct: 120 SGEERLMSRPFG---VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELL 176
Query: 394 SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIAN 447
+ W ++T +E + LV + V + +N L I K++G + + A
Sbjct: 177 NEWHSSLTLKEAELLVLKILKQ-VMEEKLDENNAQLSCITKQDGFKIYDNEKTAE 230
|
| >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 58/249 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GVV+ + +++ ++E K+ + +I +G D
Sbjct: 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETL-SKVSLLTPDIGAVYSGMGPDY--- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITAN-RLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDL 336
RV+ R + ++ E K LV +
Sbjct: 83 -------------------RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSE---------- 113
Query: 337 GSGSNIDLCGHVSA------------ALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGS 383
+ + +L++ G D+ G L+ + P GS +G
Sbjct: 114 -------VAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGK 166
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
GS+AA + E W + E+ + + V + I+L +I + L
Sbjct: 167 GSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNG-DTIELAIIGDENPDLLGYT 225
Query: 444 EIANVKGKK 452
I KG +
Sbjct: 226 GIPTDKGPR 234
|
| >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-12
Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 61/247 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K GT VG + VVLG + R+T K+ + ++ +G AD+++
Sbjct: 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRI- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
LI + RV + R E+ + L R
Sbjct: 83 --LI------------EKARVEAQS-------HRLTLEDPVTVEYLTRY----------- 110
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD--DTGAHLFNIYPHGSSDTVPFCTMGS 383
+ G + ++ G D D L+ P G + T+G
Sbjct: 111 ------VAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGR 164
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAA--GVFNDLGSGSNIDLCVIKK-NGVEYL 440
S E N+ ++ V+ + + V NI++ V+K + + L
Sbjct: 165 NSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT--GAKNIEITVVKPDSDIVAL 222
Query: 441 RPYEIAN 447
EI
Sbjct: 223 SSEEINQ 229
|
| >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 28/247 (11%), Positives = 61/247 (24%), Gaps = 64/247 (25%)
Query: 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281
+T + D V+ + + D + I +++ I G D +
Sbjct: 27 NQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV-SYIFCISRTIGMVVNGPIPDARNAA 85
Query: 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLGS 338
+ A FRY+ C L +
Sbjct: 86 L---------------RAKAEAAE-------FRYKYGYDMPCDVLAKR------------ 111
Query: 339 GSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ L VD + G ++ P G G
Sbjct: 112 -----MANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQ 166
Query: 386 LAAMSVFESNWK-------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+ E+++K + E+ + + + + +++++ V K+
Sbjct: 167 QEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSK-NDLEVGVATKDKFF 225
Query: 439 YLRPYEI 445
L I
Sbjct: 226 TLSAENI 232
|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 1e-11
Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 40/194 (20%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG-AGTAADTQVTTDLI 284
TTI+ V+G D + T + V + N +K+ + + G AG+ AD D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
++L N L + + ++ +++R A + D + I
Sbjct: 61 EAKLREWGGN------------LTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISG 108
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
G V I P +GSG A++ ++ + T+
Sbjct: 109 NGEV------------------IQPDD-----DAAAIGSGGPYALAAAKALLR--NTDLS 143
Query: 405 CKKLVRDA--IAAG 416
+++V A IA
Sbjct: 144 AREIVEKAMTIAGE 157
|
| >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 57/247 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A T +G + DGV+L A+ R + +KI+ + +++ C AG +D V
Sbjct: 27 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 86
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
T+ R+I + Q +E C++LV
Sbjct: 87 TN---------------ELRLIAQR-------YLLQYQEPIPCEQLVTA----------- 113
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384
LC A +L+ G D G L+ P G+ +G+
Sbjct: 114 ------LCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNN 167
Query: 385 SLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRP 442
S AA+S+ + ++K MT + L + + S +++ + ++NG +R
Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRV 227
Query: 443 YEIANVK 449
+ V+
Sbjct: 228 LKQKEVE 234
|
| >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 61/246 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVV + T +V +KN KI + ++I C +G D +
Sbjct: 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHL 84
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+ R A+ F+ +
Sbjct: 85 VN---------------RGREEAAS-------FKKLYKTPIPIPAFADR----------- 111
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
L +V A + + GGVD GAHL+ + P GS G G
Sbjct: 112 ------LGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGR 165
Query: 386 LAAMSVFE---SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI---KKNGVEY 439
+A + E + ++ E K I ++ +++ + NG+
Sbjct: 166 QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 225
Query: 440 LRPYEI 445
++
Sbjct: 226 FVKGDL 231
|
| >3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 61/246 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVV + T +V +KN KI + ++I C +G D +
Sbjct: 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+ R A+ F+ +
Sbjct: 89 VN---------------RGREEAAS-------FKKLYKTPIPIPAFADR----------- 115
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
L +V A + + GGVD GAHL+ + P GS G G
Sbjct: 116 ------LGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGR 169
Query: 386 LAAMSVFE---SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI---KKNGVEY 439
+A + E + ++ E K I ++ +++ + NG+
Sbjct: 170 QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 229
Query: 440 LRPYEI 445
++
Sbjct: 230 FVKGDL 235
|
| >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-11
Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 63/236 (26%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATD---DTIVAEKNCQKIHYMAKNIYCCGAGTAADT 277
A K G+ VG VL A R D +KI +++ AG A D
Sbjct: 27 AIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ------KKIIKCDEHMGLSLAGLAPDA 80
Query: 278 QVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDL 336
+V ++ R + + ++
Sbjct: 81 RVLSN---------------YLRQQCNYSS-----LVFNRKLAVERAGHL---------- 110
Query: 337 GSGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
LC L++ G D +GAHL P G+ + +G+
Sbjct: 111 -------LCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGAR 163
Query: 385 SLAAMSVFESNWK----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
S A + E + +E K +AI+ + ++ + N+ + ++ K+
Sbjct: 164 SQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDT 219
|
| >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 6e-11
Identities = 36/245 (14%), Positives = 69/245 (28%), Gaps = 61/245 (24%)
Query: 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281
+ G T V D V+ + D + + + + +NI C G AD++
Sbjct: 33 NQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV-THLFKITENIGCVMTGMTADSRSQV 91
Query: 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLGS 338
R AN ++Y+ L +
Sbjct: 92 Q---------------RARYEAAN-------WKYKYGYEIPVDMLCKR------------ 117
Query: 339 GSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ ++L G+D + G ++ P G G
Sbjct: 118 -----IADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQ 172
Query: 386 LAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LR 441
+ S E K + T E+ + ++ + D S I++ V+ ++ L
Sbjct: 173 TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFRILT 231
Query: 442 PYEIA 446
EI
Sbjct: 232 EAEID 236
|
| >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-11
Identities = 41/247 (16%), Positives = 76/247 (30%), Gaps = 61/247 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+ VG VL A RA + +K KI ++ +I AG AD ++
Sbjct: 28 AVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK---KILHVDNHIGISIAGLTADARL- 83
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
L R + R+ + +LV
Sbjct: 84 --LC------------NFMRQECLD-------SRFVFDRPLPVSRLVSL----------- 111
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ L++ G DD G H+F P + ++G+ S
Sbjct: 112 ------IGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARS 165
Query: 386 LAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDLG-SGSNIDLCVIKKN-GVEYLR 441
+A + E + M E K A+ + + + N+ + ++ K+
Sbjct: 166 QSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYD 225
Query: 442 PYEIANV 448
+++
Sbjct: 226 DDDVSPF 232
|
| >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 60/243 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T VG D VVLG + ++ +KI + N+ AG AD ++
Sbjct: 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RKICALDDNVCMAFAGLTADARI- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+I RV + R E+ + + R
Sbjct: 83 --VI------------NRARVECQS-------HRLTVEDPVTVEYITRY----------- 110
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGA-HLFNIYPHGSSDTVPFCTMGSG 384
+ + ++ G D G L+ P G+ +G G
Sbjct: 111 ------IASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRG 164
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGS-NIDLCVIKKN-GVEYLRP 442
+ + E N+ E + ++ I A + + SG NI+L V++++ ++ L P
Sbjct: 165 AKSVREFLEKNYTDEAIETD-DLTIKLVIKA-LLEVVQSGGKNIELAVMRRDQSLKILNP 222
Query: 443 YEI 445
EI
Sbjct: 223 EEI 225
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| 3nzj_H | 261 | Proteasome component PUP1; ubiquitin, protein degr | 100.0 | |
| 3unf_H | 234 | Proteasome subunit beta type-10; antigen presentat | 100.0 | |
| 1ryp_I | 222 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_I | 234 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1yar_A | 233 | Proteasome alpha subunit; proteasome 20S, PA26 pro | 100.0 | |
| 1iru_B | 233 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1q5r_H | 294 | Proteasome beta-type subunit 1; proteasome assembl | 100.0 | |
| 3nzj_K | 287 | Proteasome component PRE2; ubiquitin, protein degr | 100.0 | |
| 1iru_N | 219 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1ryp_A | 243 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1ryp_C | 244 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 2jay_A | 291 | Proteasome; hydrolase; 1.99A {Mycobacterium tuberc | 100.0 | |
| 1ryp_N | 233 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_C | 261 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1ryp_F | 233 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1ryp_E | 242 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_E | 241 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1yar_H | 217 | Proteasome beta subunit; proteasome 20S, PA26 prot | 100.0 | |
| 1ryp_D | 241 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 3h4p_a | 219 | Proteasome subunit beta; core particle, cytoplasm, | 100.0 | |
| 1iru_A | 246 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1j2q_H | 202 | Proteasome beta subunit; ubiquitin, CP, hydrolase; | 100.0 | |
| 1iru_F | 263 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 3h4p_A | 264 | Proteasome subunit alpha; core particle, cytoplasm | 100.0 | |
| 1ryp_G | 244 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_G | 254 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1iru_D | 248 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1j2p_A | 246 | Alpha-ring, proteasome alpha subunit; hydrolase; 2 | 100.0 | |
| 1g0u_M | 266 | Proteasome component PRE4; ubiquitin, degradation, | 100.0 | |
| 1iru_L | 204 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1iru_H | 205 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1ryp_L | 212 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1ryp_B | 250 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1ryp_K | 198 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 3nzj_F | 288 | Proteasome component C1; ubiquitin, protein degrad | 100.0 | |
| 1ryp_H | 205 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_M | 213 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 3unf_N | 199 | Proteasome subunit beta type-9; antigen presentati | 100.0 | |
| 1ryp_M | 222 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_J | 205 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 3mi0_A | 248 | Proteasome subunit alpha; enzyme inhibitors, lacto | 100.0 | |
| 1iru_K | 201 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 1q5q_H | 235 | Proteasome beta-type subunit 1; proteasome assembl | 100.0 | |
| 1ryp_J | 204 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1q5q_A | 259 | Proteasome alpha-type subunit 1; proteasome assemb | 100.0 | |
| 2z3b_A | 180 | ATP-dependent protease HSLV; N-terminal nucleophIl | 99.95 | |
| 1g3k_A | 174 | ATP-dependent protease HSLV; hydrolase; 1.90A {Hae | 99.95 | |
| 1m4y_A | 171 | ATP-dependent protease HSLV; N-terminal catalytic | 99.95 | |
| 1ryp_H | 205 | 20S proteasome; multicatalytic proteinase, protein | 99.72 | |
| 3unf_H | 234 | Proteasome subunit beta type-10; antigen presentat | 99.7 | |
| 1yar_H | 217 | Proteasome beta subunit; proteasome 20S, PA26 prot | 99.7 | |
| 1iru_N | 219 | 20S proteasome; cell cycle, immune response, prote | 99.68 | |
| 1iru_J | 205 | 20S proteasome; cell cycle, immune response, prote | 99.68 | |
| 3h4p_a | 219 | Proteasome subunit beta; core particle, cytoplasm, | 99.67 | |
| 1ryp_J | 204 | 20S proteasome; multicatalytic proteinase, protein | 99.66 | |
| 1ryp_N | 233 | 20S proteasome; multicatalytic proteinase, protein | 99.66 | |
| 1iru_M | 213 | 20S proteasome; cell cycle, immune response, prote | 99.65 | |
| 1yar_A | 233 | Proteasome alpha subunit; proteasome 20S, PA26 pro | 99.65 | |
| 1iru_C | 261 | 20S proteasome; cell cycle, immune response, prote | 99.65 | |
| 1ryp_M | 222 | 20S proteasome; multicatalytic proteinase, protein | 99.65 | |
| 1iru_I | 234 | 20S proteasome; cell cycle, immune response, prote | 99.65 | |
| 1ryp_A | 243 | 20S proteasome; multicatalytic proteinase, protein | 99.65 | |
| 1ryp_I | 222 | 20S proteasome; multicatalytic proteinase, protein | 99.64 | |
| 1iru_B | 233 | 20S proteasome; cell cycle, immune response, prote | 99.64 | |
| 3unf_N | 199 | Proteasome subunit beta type-9; antigen presentati | 99.64 | |
| 1ryp_C | 244 | 20S proteasome; multicatalytic proteinase, protein | 99.64 | |
| 1g0u_M | 266 | Proteasome component PRE4; ubiquitin, degradation, | 99.63 | |
| 1iru_H | 205 | 20S proteasome; cell cycle, immune response, prote | 99.62 | |
| 1iru_A | 246 | 20S proteasome; cell cycle, immune response, prote | 99.62 | |
| 1iru_L | 204 | 20S proteasome; cell cycle, immune response, prote | 99.62 | |
| 1j2q_H | 202 | Proteasome beta subunit; ubiquitin, CP, hydrolase; | 99.62 | |
| 1iru_E | 241 | 20S proteasome; cell cycle, immune response, prote | 99.62 | |
| 1ryp_L | 212 | 20S proteasome; multicatalytic proteinase, protein | 99.61 | |
| 1ryp_E | 242 | 20S proteasome; multicatalytic proteinase, protein | 99.61 | |
| 2z3b_A | 180 | ATP-dependent protease HSLV; N-terminal nucleophIl | 99.61 | |
| 1ryp_B | 250 | 20S proteasome; multicatalytic proteinase, protein | 99.6 | |
| 1iru_K | 201 | 20S proteasome; cell cycle, immune response, prote | 99.6 | |
| 1ryp_G | 244 | 20S proteasome; multicatalytic proteinase, protein | 99.59 | |
| 1ryp_F | 233 | 20S proteasome; multicatalytic proteinase, protein | 99.59 | |
| 1j2p_A | 246 | Alpha-ring, proteasome alpha subunit; hydrolase; 2 | 99.59 | |
| 1iru_F | 263 | 20S proteasome; cell cycle, immune response, prote | 99.58 | |
| 1ryp_K | 198 | 20S proteasome; multicatalytic proteinase, protein | 99.58 | |
| 3h4p_A | 264 | Proteasome subunit alpha; core particle, cytoplasm | 99.57 | |
| 1q5q_H | 235 | Proteasome beta-type subunit 1; proteasome assembl | 99.57 | |
| 1iru_G | 254 | 20S proteasome; cell cycle, immune response, prote | 99.56 | |
| 1ryp_D | 241 | 20S proteasome; multicatalytic proteinase, protein | 99.56 | |
| 1m4y_A | 171 | ATP-dependent protease HSLV; N-terminal catalytic | 99.54 | |
| 1iru_D | 248 | 20S proteasome; cell cycle, immune response, prote | 99.54 | |
| 3nzj_F | 288 | Proteasome component C1; ubiquitin, protein degrad | 99.51 | |
| 1g3k_A | 174 | ATP-dependent protease HSLV; hydrolase; 1.90A {Hae | 99.5 | |
| 1q5q_A | 259 | Proteasome alpha-type subunit 1; proteasome assemb | 99.44 | |
| 3mi0_A | 248 | Proteasome subunit alpha; enzyme inhibitors, lacto | 99.44 | |
| 3nzj_H | 261 | Proteasome component PUP1; ubiquitin, protein degr | 97.57 | |
| 3nzj_K | 287 | Proteasome component PRE2; ubiquitin, protein degr | 97.25 | |
| 2jay_A | 291 | Proteasome; hydrolase; 1.99A {Mycobacterium tuberc | 96.04 | |
| 1q5r_H | 294 | Proteasome beta-type subunit 1; proteasome assembl | 95.82 |
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=382.52 Aligned_cols=249 Identities=51% Similarity=0.819 Sum_probs=211.8
Q ss_pred HHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccC
Q psy10990 137 EINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGY 216 (486)
Q Consensus 137 ~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~ 216 (486)
.||+.|.++|+++|+++++|||+||++++||||||||+|+|.|.+|.+++++||++
T Consensus 10 ~rn~~~~~~~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~------------------------ 65 (261)
T 3nzj_H 10 QRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR------------------------ 65 (261)
T ss_dssp --------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEE------------------------
T ss_pred hhHHHHHhcCCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEE------------------------
Confidence 57888889999999999999999999999999999999999999999888887766
Q ss_pred CCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 217 ~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
|++|+++++||..+|++.+.+.++.+++.|++.++
T Consensus 66 ---------------------------------------------I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 66 ---------------------------------------------ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ---------------------------------------------EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------------EcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 44778889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV 376 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~ 376 (486)
++++++.+++.+++.++.+. +||++++|+||||+.||+||++||+|++.++
T Consensus 101 ~~~~v~~~a~~l~~~l~~~~-----------------------------~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~ 151 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKYQ-----------------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVG 151 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhc-----------------------------CcccEEEEEEEEeCCCCEEEEECCCccEEec
Confidence 99999999999999887665 7999999999999999999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCccccccccCcCCCC
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGD 455 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~eI~~~~~~~~~~ 455 (486)
+++|+|+|++.++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++| +++++++.+++.|..+++.
T Consensus 152 ~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~~~~ 231 (261)
T 3nzj_H 152 YYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKS 231 (261)
T ss_dssp SEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSC
T ss_pred CeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccCCceeeeeEEEEEEEeeeEEEEec
Q psy10990 456 YRFKRGTTALLSTQRIPIVVESEQVIHT 483 (486)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
|+||+|+|+||++..+++.+..|.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T 3nzj_H 232 YKFPRGTTAVLKESIVNICDIQEEQVDI 259 (261)
T ss_dssp CCCCTTCSCEEEEEEECCCC--------
T ss_pred cCCCCCCcceeeEEEEEeeeeeEEeeec
Confidence 9999999999999999999887765543
|
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=345.64 Aligned_cols=222 Identities=51% Similarity=0.907 Sum_probs=213.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++++|+++ +||++++++||||++||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (234)
T 3unf_H 81 RILRQTLFRYQ-----------------------------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQ 131 (234)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTH
T ss_pred HHHHHHHHhcC-----------------------------CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCc
Confidence 99999988766 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCccccCCceee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~~~~~~~~~~ 465 (486)
++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|+++++++++++.|.++++.|+|++|+|+|
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 211 (234)
T 3unf_H 132 GAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTTPV 211 (234)
T ss_dssp HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCCCCCCCCCCTTCSCE
T ss_pred hhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccccccccccCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEee
Q psy10990 466 LSTQRIPIVVE 476 (486)
Q Consensus 466 ~~~~~~~~~~~ 476 (486)
|++..+++.+|
T Consensus 212 ~~~~~~~~~~~ 222 (234)
T 3unf_H 212 LTREVRPLTLE 222 (234)
T ss_dssp EEEEEEEC---
T ss_pred eeEEEEEeeEE
Confidence 99999999774
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=324.38 Aligned_cols=219 Identities=54% Similarity=0.894 Sum_probs=211.1
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++++|.+. +||++++|+||+|+.||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (222)
T 1ryp_I 81 QMLKQHLFKYQ-----------------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGS 131 (222)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHHHHhhcC-----------------------------CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCH
Confidence 99999987665 8999999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCccccccccCcCCCCccccCCcee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGDYRFKRGTTA 464 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~eI~~~~~~~~~~~~~~~~~~~ 464 (486)
++++++||+.|+++||+|||++++++||+.++++|..++++++|++|+++| +++++++++++.|.+++..|.||+|+|+
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (222)
T 1ryp_I 132 LAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211 (222)
T ss_dssp HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSC
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccccccCcccCCCcee
Confidence 999999999999999999999999999999999999899999999999999 9999999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy10990 465 LLSTQRIPI 473 (486)
Q Consensus 465 ~~~~~~~~~ 473 (486)
+|+|..++|
T Consensus 212 ~~~~~~~~~ 220 (222)
T 1ryp_I 212 VLKESIVNI 220 (222)
T ss_dssp EEEEEECCC
T ss_pred eeeeeeEec
Confidence 999987665
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=328.95 Aligned_cols=220 Identities=65% Similarity=1.115 Sum_probs=212.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.+|.++ +||++++++||||++||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (234)
T 1iru_I 81 RMLKQMLFRYR-----------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGS 131 (234)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHHHHHhcC-----------------------------CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCch
Confidence 99999988776 7999999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCccccCCceee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~~~~~~~~~~ 465 (486)
+.++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++++++.|.+++..|+||+|||+|
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
T 1iru_I 132 LAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211 (234)
T ss_dssp HHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCCSCCCCCTTCSCB
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCccccccccCcccCCCceee
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10990 466 LSTQRIPIV 474 (486)
Q Consensus 466 ~~~~~~~~~ 474 (486)
|+|..++|.
T Consensus 212 ~~~~~~~~~ 220 (234)
T 1iru_I 212 LTEKITPLE 220 (234)
T ss_dssp SCCCCCBCC
T ss_pred eEEEEEecc
Confidence 999887775
|
| >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=315.47 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=203.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.+. +...+.+||++|++++++++||..+|++.+.+.+
T Consensus 15 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (233)
T 1yar_A 15 FSPDGRLFQVEYA-REAVKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 92 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHH
T ss_pred ECcCCeeHHHHhH-HHHHhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHH
Confidence 5678999999994 6788999999999999999999999998874 5567889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|+||||+.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~gp~L 148 (233)
T 1yar_A 93 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQ------------------YGG------VRPYGVSLIFAGIDQIGPRL 148 (233)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BTT------BCCCCEEEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------------------cCC------cCcceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999998882 111 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~ 443 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|. ++++++|++|+++| +++++++
T Consensus 149 y~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ 227 (233)
T 1yar_A 149 FDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQE 227 (233)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHH
T ss_pred EEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHH
Confidence 999999999999999999999999999999999999999999999999999999998 79999999999998 9999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
||+.++
T Consensus 228 ei~~~l 233 (233)
T 1yar_A 228 EVKKFL 233 (233)
T ss_dssp HHHTTC
T ss_pred HHHhhC
Confidence 998764
|
| >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=317.12 Aligned_cols=220 Identities=17% Similarity=0.239 Sum_probs=204.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .+++++|+|+||++++||||+|+|++.+. .++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 89 (233)
T 1iru_B 12 FSPSGKLVQIEYA-LAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeEehhHhH-HHHHHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHH
Confidence 6678999999994 67889999999999999999999999884 566677889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.++++++++++.|++ . +| .|||++++|++|||+.||+|
T Consensus 90 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~------------------~-~~-----~rP~~v~~lvaG~D~~gp~L 145 (233)
T 1iru_B 90 RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ------------------S-GG-----VRPFGVSLLICGWNEGRPYL 145 (233)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------S-BT-----BCCCSEEEEEEEECSSSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------------------c-CC-----CCCcEEEEEEEEEeCCCCeE
Confidence 999999999999999999999999999988882 1 11 38999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++| .++++++|++|+++|+++++++|
T Consensus 146 y~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~e 224 (233)
T 1iru_B 146 FQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTE 224 (233)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHH
T ss_pred EEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999999999 67899999999999999999999
Q ss_pred cccccCc
Q psy10990 445 IANVKGK 451 (486)
Q Consensus 445 I~~~~~~ 451 (486)
|+.++..
T Consensus 225 i~~~~~~ 231 (233)
T 1iru_B 225 VKDYLAA 231 (233)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9988753
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=325.60 Aligned_cols=233 Identities=20% Similarity=0.206 Sum_probs=208.6
Q ss_pred ccchHHHHHHHHHHHHHHHHcCC-----CC--------CCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeee
Q psy10990 124 LSTSTIVQKALQSEINAFLASKG-----YS--------GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLL 190 (486)
Q Consensus 124 ~~~~~~~~~~~~~~~n~~l~~~g-----~~--------~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI 190 (486)
..+|||+ +||++.++++||... .+ +.+++++|||+|||+++||||||+|+|+|+|.+|.+++++||
T Consensus 21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI 99 (294)
T 1q5r_H 21 SNLSSFT-DYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAV 99 (294)
T ss_dssp CTTSCHH-HHHTTTCGGGSTTCC-----------------CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCE
T ss_pred CCcccHH-HHHhhhCchhccccccccccCCCccccchhHHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceE
Confidence 5779999 999999999998542 22 345689999999999999999999999999999988877777
Q ss_pred eeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEe
Q psy10990 191 SYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270 (486)
Q Consensus 191 ~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~g 270 (486)
++ |++++++++
T Consensus 100 ~~---------------------------------------------------------------------I~~~i~~~~ 110 (294)
T 1q5r_H 100 YV---------------------------------------------------------------------TDEYSAAGI 110 (294)
T ss_dssp EE---------------------------------------------------------------------EETTEEEEE
T ss_pred EE---------------------------------------------------------------------ECCcEEEEE
Confidence 55 457888899
Q ss_pred cCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccce
Q psy10990 271 AGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSA 350 (486)
Q Consensus 271 SGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gv 350 (486)
||..+|++.|.+.++.+++.|++.++++++++.+++.+++++|.+++. + .|||++
T Consensus 111 aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~------------~-------------~rp~~v 165 (294)
T 1q5r_H 111 AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA------------A-------------MQGLAV 165 (294)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH------------H-------------TTTTCE
T ss_pred eecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhh------------h-------------cCCcce
Confidence 999999999999999999999999999999999999999999988732 0 289999
Q ss_pred eEEEEEEcCC-C-----ceEEEEccCCceeec--CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy10990 351 ALVLGGVDDT-G-----AHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLG 422 (486)
Q Consensus 351 slLiaG~D~~-G-----p~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~ 422 (486)
++|++|||.. + |+||++||+|++.++ +++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..
T Consensus 166 ~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~ 245 (294)
T 1q5r_H 166 VPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 245 (294)
T ss_dssp EEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 9999999975 6 999999999999999 8999999999999999999999999999999999999999999987
Q ss_pred CCCc--e-----EEEEEEcCCEEEcCccccccccCc
Q psy10990 423 SGSN--I-----DLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 423 sg~~--I-----eI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++.. + +|++|+++|+++++++|++.++..
T Consensus 246 sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~ 281 (294)
T 1q5r_H 246 TGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARR 281 (294)
T ss_dssp TCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred cCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHH
Confidence 6543 6 999999999999999999988653
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=322.23 Aligned_cols=231 Identities=21% Similarity=0.293 Sum_probs=187.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhc
Q psy10990 121 FGRLSTSTIVQKALQSEINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTV 200 (486)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~ 200 (486)
|..+..+++. .||+.....- .....+.++++|||+|||+++||||||+|+|+|+|.+|.+++++||++
T Consensus 44 ~~~p~~~~p~-~~~~~~~~~~---~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~-------- 111 (287)
T 3nzj_K 44 LTVPPIASPQ-QFLRAHTDDS---RNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIE-------- 111 (287)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEE--------
T ss_pred cccCCCCCHH-HHHHHhcccc---cccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEE--------
Confidence 4444445666 6666653321 111236678999999999999999999999999999998888877765
Q ss_pred cchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 201 SSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 201 A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
|++++++++||..+|++.+
T Consensus 112 -------------------------------------------------------------I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 112 -------------------------------------------------------------INPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------------------------------------------EETTEEEECEECHHHHHHH
T ss_pred -------------------------------------------------------------EcCcEEEEecCCHHHHHHH
Confidence 4577888999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-C
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-D 359 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~ 359 (486)
.+.++.+++.|++.+++.++++.+++++++++|.+++ .||++++|+|||| +
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----------------------------~p~~v~~lvaG~D~~ 182 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----------------------------AGLSMGTMICGYTRK 182 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----------------------------SCCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----------------------------CCceEEEEEEEEcCC
Confidence 9999999999999999999999999999999998882 5999999999999 5
Q ss_pred CCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 360 TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 360 ~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
.||+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|+++
T Consensus 183 ~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~ 262 (287)
T 3nzj_K 183 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 262 (287)
T ss_dssp TEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc-cCcC
Q psy10990 440 LRPYEIANV-KGKK 452 (486)
Q Consensus 440 l~~~eI~~~-~~~~ 452 (486)
++++||+++ |..+
T Consensus 263 l~~~ev~~~l~~~~ 276 (287)
T 3nzj_K 263 HGNHDVGELFWKVK 276 (287)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred eCHHHHHHHHHHHH
Confidence 999999875 5544
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=307.31 Aligned_cols=214 Identities=18% Similarity=0.239 Sum_probs=200.2
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh-hcCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL-NTGK 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l-~~g~ 297 (486)
.++|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999988788888999999999999999999999999999999999999998 9999
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP 377 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~ 377 (486)
+++++.+++.+++.+|.++. + .|||++++|++|||+.||+||++||+|++.+++
T Consensus 82 ~~~v~~la~~l~~~ly~~r~--------------------~------~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 135 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRS--------------------K------MNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 135 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--------------------T------TCCCCEEEEEEEEETTEEEEEEECSSCCEEECS
T ss_pred CCCHHHHHHHHHHHHHHhcc--------------------c------CCCceEEEEEEEEECCCCEEEEECCCCCeEECC
Confidence 99999999999999876441 0 289999999999998899999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGD 455 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~ 455 (486)
++|+|+|+++++++||+.|++ +||++||++++++||+.+.++|..++++++|++|+++|++++++++|++.|.+++-.
T Consensus 136 ~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~~ 215 (219)
T 1iru_N 136 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMI 215 (219)
T ss_dssp EEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCS
T ss_pred eEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHhh
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999998655
Q ss_pred ccc
Q psy10990 456 YRF 458 (486)
Q Consensus 456 ~~~ 458 (486)
..|
T Consensus 216 ~~~ 218 (219)
T 1iru_N 216 SGF 218 (219)
T ss_dssp CC-
T ss_pred cCC
Confidence 443
|
| >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=316.31 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=203.4
Q ss_pred hhHhHHhHhccCCCcccccc-cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~-GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+|||++|. .+++++ |+|+||++++||||+|+|++.+ +.++...+.+||++|++|+++++||..+|++.+.+.
T Consensus 10 fsp~Grl~QvEYA-~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 87 (243)
T 1ryp_A 10 FSPEGRLYQVEYA-FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87 (243)
T ss_dssp CCTTSCCHHHHHH-HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHH
T ss_pred ECCCCeeHHHHHH-HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHH
Confidence 5678999999994 678888 9999999999999999999988 455567788999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.+++.|++.++++++++.++++++++++.|++. + | .|||++++|+||||+ .||
T Consensus 88 ~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~------------------~-~-----~rP~~v~~lvaG~D~~~gp 143 (243)
T 1ryp_A 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR------------------A-Y-----MRPLGVILTFVSVDEELGP 143 (243)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------T-T-----SCCCSCEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------C-C-----ccccceEEEEEEEcCCCCc
Confidence 99999999999999999999999999999877731 1 1 289999999999997 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-------NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-------dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.++| .++++++|++|+++
T Consensus 144 ~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~ 222 (243)
T 1ryp_A 144 SIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD 222 (243)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT
T ss_pred EEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC
Confidence 999999999999999999999999999999999999 9999999999999999999999 68999999999999
Q ss_pred CEEEcCccccccccC
Q psy10990 436 GVEYLRPYEIANVKG 450 (486)
Q Consensus 436 G~~~l~~~eI~~~~~ 450 (486)
|+++++++||+.++.
T Consensus 223 g~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 223 KFFTLSAENIEERLV 237 (243)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred CeEECCHHHHHHHHH
Confidence 999999999998764
|
| >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=313.24 Aligned_cols=222 Identities=18% Similarity=0.275 Sum_probs=206.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (244)
T 1ryp_C 12 FSPEGRLYQVEYA-LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90 (244)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECcCCeeHHHHhH-HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHH
Confidence 5678999999994 678899999999999999999999999999887678899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|++||| +.||+
T Consensus 91 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~~gp~ 146 (244)
T 1ryp_C 91 RIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ------------------HGG------LRPFGVSFIYAGYDDRYGYQ 146 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH------------------BSS------CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------cCC------ccceEEEEEEEEEcCCCCCE
Confidence 999999999999999999999999999998883 111 28999999999999 77899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE--cCC----E
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK--KNG----V 437 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt--kdG----~ 437 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+ ++| +
T Consensus 147 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~ 226 (244)
T 1ryp_C 147 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQ 226 (244)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEE
T ss_pred EEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeE
Confidence 9999999999999999999999999999999999999999999999999999999965679999999999 886 8
Q ss_pred EEcCccccccccCc
Q psy10990 438 EYLRPYEIANVKGK 451 (486)
Q Consensus 438 ~~l~~~eI~~~~~~ 451 (486)
+.++++||+.++..
T Consensus 227 ~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 227 KIFKPQEIKDILVK 240 (244)
T ss_dssp EECCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 99999999988653
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=321.16 Aligned_cols=233 Identities=20% Similarity=0.206 Sum_probs=168.5
Q ss_pred ccchHHHHHHHHHHHHHHHHcC--CCCC----CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeeccee
Q psy10990 124 LSTSTIVQKALQSEINAFLASK--GYSG----PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197 (486)
Q Consensus 124 ~~~~~~~~~~~~~~~n~~l~~~--g~~~----~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~ 197 (486)
+.++||+ .||+..++++|+.. |..+ +.++++|||+|||+++||||||||+|+|+|.+|++++++||++
T Consensus 20 ~~~~~f~-~~~~~~~~~~l~~~~~~~~~~~~ya~~v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~----- 93 (291)
T 2jay_A 20 VDLSSFT-DFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI----- 93 (291)
T ss_dssp ---------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEE-----
T ss_pred CCCccHH-HHhhhcChhhccccccccCcCccccccccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEE-----
Confidence 4568999 99999999999853 5543 3348999999999999999999999999999998888877755
Q ss_pred hhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHH
Q psy10990 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADT 277 (486)
Q Consensus 198 ~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~ 277 (486)
|++++++++||..+|+
T Consensus 94 ----------------------------------------------------------------i~d~i~~~~aG~~aD~ 109 (291)
T 2jay_A 94 ----------------------------------------------------------------TDDYTATGIAGTAAVA 109 (291)
T ss_dssp ----------------------------------------------------------------EETTEEEEEESCHHHH
T ss_pred ----------------------------------------------------------------eCCcEEEEEcccHHHH
Confidence 4578888999999999
Q ss_pred HHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEE
Q psy10990 278 QVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGV 357 (486)
Q Consensus 278 ~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~ 357 (486)
+.|.+.++.+++.|++.++..++++.+++.+++++|.++.. . .|||++++|+|||
T Consensus 110 ~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~-~------------------------~rpf~v~~lvaG~ 164 (291)
T 2jay_A 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAA-A------------------------MQGLLALPLLAGY 164 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHH-H------------------------HHTCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhh-h------------------------ccccceeEEEEEE
Confidence 99999999999999999999999999999999999988631 0 2799999999999
Q ss_pred cCC-C-----ceEEEEccCCcee--ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc---
Q psy10990 358 DDT-G-----AHLFNIYPHGSSD--TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN--- 426 (486)
Q Consensus 358 D~~-G-----p~Ly~iDpsGs~~--e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~--- 426 (486)
|.. + |+||++||+|++. +++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..+++.
T Consensus 165 D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~v 244 (291)
T 2jay_A 165 DIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLV 244 (291)
T ss_dssp CTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC-------------
T ss_pred eCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccc
Confidence 975 4 8999999999998 8999999999999999999999999999999999999999999999877653
Q ss_pred ----eEEEEEEcCCEEEcCccccccccCc
Q psy10990 427 ----IDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 427 ----IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++|++|+++|+++++++||+.++..
T Consensus 245 r~~~~~v~vi~~dg~~~l~~~ei~~~~~~ 273 (291)
T 2jay_A 245 RGIFPTAVIIDADGAVDVPESRIAELARA 273 (291)
T ss_dssp ---CCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred cccCCEEEEEECCCeEEcCHHHHHHHHHH
Confidence 2699999999999999999998653
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=307.19 Aligned_cols=215 Identities=15% Similarity=0.230 Sum_probs=202.4
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh-----
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL----- 293 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l----- 293 (486)
.++|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 467899999999999999999999999988778888999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGS 372 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs 372 (486)
.+++.++++.+++++++.+|.++. + .|||++++|++|||+. ||+||++||+|+
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~-------------~-------------~~P~~v~~lvaG~D~~~gp~Ly~id~~G~ 135 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRS-------------K-------------MNPLWNAIIVAGVQSNGDQFLRYVNLLGV 135 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHH-------------T-------------TCCCCEEEEEEEECTTSCEEEEEEETTCC
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcC-------------C-------------CCCceEEEEEEEEcCCCCEEEEEECCCcC
Confidence 899999999999999999876541 0 2899999999999985 899999999999
Q ss_pred eeecCeEEEcCchhHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCccccc
Q psy10990 373 SDTVPFCTMGSGSLAAMSVFESNWKP-----NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIA 446 (486)
Q Consensus 373 ~~e~~~~AiGsGs~~a~~~Lek~yk~-----dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI~ 446 (486)
+.+++++|+|+|+++++++||+.|++ +||+|||++++++||+.+.++|..++++++|++|+++ |+++++++||+
T Consensus 136 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~ 215 (233)
T 1ryp_N 136 TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVE 215 (233)
T ss_dssp EECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred eEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999 99999999999
Q ss_pred cc-cCcCCCCcccc
Q psy10990 447 NV-KGKKDGDYRFK 459 (486)
Q Consensus 447 ~~-~~~~~~~~~~~ 459 (486)
++ |++++....|.
T Consensus 216 ~~~w~~~~~~~~~~ 229 (233)
T 1ryp_N 216 NMKWDFAKDIKGYG 229 (233)
T ss_dssp SCCCGGGGGCCSSS
T ss_pred cccchhhhhccCcC
Confidence 99 99998777774
|
| >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.30 Aligned_cols=222 Identities=20% Similarity=0.254 Sum_probs=208.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (261)
T 1iru_C 12 FSPEGRLYQVEYA-MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 90 (261)
T ss_dssp CCTTSCCHHHHHH-HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHhH-HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHH
Confidence 6678999999994 678899999999999999999999999999988887799999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.+++.|.+.++++++++.+++.+++++|.+++ .+. .|||++++|+||||+ .||+
T Consensus 91 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rP~~v~~lvaG~D~~~gp~ 146 (261)
T 1iru_C 91 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ------------------FGG------KRPFGVSLLYIGWDKHYGFQ 146 (261)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BSS------CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc------------------ccC------cCcceEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998882 111 289999999999995 7899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC----EE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG----~~ 438 (486)
||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.++|..++++++|++|+++| ++
T Consensus 147 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~ 226 (261)
T 1iru_C 147 LYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIR 226 (261)
T ss_dssp EEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEE
T ss_pred EEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999997 79
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
+++++||+.++..
T Consensus 227 ~l~~~ei~~~l~~ 239 (261)
T 1iru_C 227 VLKQKEVEQLIKK 239 (261)
T ss_dssp ECCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999998653
|
| >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=309.33 Aligned_cols=216 Identities=22% Similarity=0.225 Sum_probs=200.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.++. .+.+||++|++|+++++||..+|++.+.+.+
T Consensus 12 fsp~Grl~QvEy-A~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (233)
T 1ryp_F 12 FSPTGRLFQVEY-ALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87 (233)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHH-HHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHH
Confidence 567899999999 467889999999999999999999999988754 3679999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.++++++.|++. ++ .|||++++|+||||+.||+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~------------------~~------~rp~~v~~lvaG~D~~gp~L 143 (233)
T 1ryp_F 88 RQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS------------------YG------GRPYGVGLLIIGYDKSGAHL 143 (233)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHB------------------TT------CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------cC------CcCcceEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999988831 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CC--CHHHHHHHHHHHHHHhhhcC-CCCCCceEEEEEEcC-CEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NM--TEEECKKLVRDAIAAGVFND-LGSGSNIDLCVIKKN-GVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dm--S~eEAi~La~kaLk~a~~rD-~~sg~~IeI~iItkd-G~~ 438 (486)
|++||+|++.+++++|+|+|++.++++||+.|++ +| |+|||+++++++|+.+. +| ..++++++|++|+++ |++
T Consensus 144 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~ 222 (233)
T 1ryp_F 144 LEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFT 222 (233)
T ss_dssp EEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEE
T ss_pred EEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEE
Confidence 9999999999999999999999999999999998 99 99999999999999999 77 578999999999999 799
Q ss_pred EcCcccccccc
Q psy10990 439 YLRPYEIANVK 449 (486)
Q Consensus 439 ~l~~~eI~~~~ 449 (486)
+++++||+.++
T Consensus 223 ~l~~~ei~~~l 233 (233)
T 1ryp_F 223 IYDGEAVAKYI 233 (233)
T ss_dssp EEEGGGGGGGC
T ss_pred ECCHHHHHhhC
Confidence 99999998864
|
| >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=311.93 Aligned_cols=223 Identities=25% Similarity=0.310 Sum_probs=204.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++ ..+.+||++|++++++++||..+|++.+.+.+
T Consensus 7 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 84 (242)
T 1ryp_E 7 FSPEGRLFQVEYS-LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84 (242)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHH
T ss_pred ECCCCcChHHHhH-HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHH
Confidence 6778999999994 678899999999999999999999999998877 77899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCC-CCCCcc-ccccceeEEEEEEc-CCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS-GSNIDL-CGHVSAALVLGGVD-DTG 361 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gS-G~nVdl-~rP~gvslLiaG~D-~~G 361 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .+. .. .+ .|||++++|++||| ..|
T Consensus 85 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~------------------~~~~~~--~l~~RP~~v~~lvaG~D~~~g 144 (242)
T 1ryp_E 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGE------------------GASGEE--RLMSRPFGVALLIAGHDADDG 144 (242)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBS------------------SCTTSC--CCBSSCCSEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc------------------ccCccc--ccccCcceEEEEEEEEeCCCC
Confidence 999999999999999999999999999887772 111 00 01 38999999999999 678
Q ss_pred ceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 362 AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 362 p~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++ ..++.+++|++|+++| ++++
T Consensus 145 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~ 223 (242)
T 1ryp_E 145 YQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIY 223 (242)
T ss_dssp EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEEC
T ss_pred CEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEEC
Confidence 9999999999999999999999999999999999999999999999999999999998 5689999999999998 6999
Q ss_pred CccccccccC
Q psy10990 441 RPYEIANVKG 450 (486)
Q Consensus 441 ~~~eI~~~~~ 450 (486)
+++||+.++.
T Consensus 224 ~~~ei~~~~~ 233 (242)
T 1ryp_E 224 DNEKTAELIK 233 (242)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998764
|
| >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=311.93 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=204.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.+.++ ..+.+||++|++++++++||..+|++.+.+.+
T Consensus 15 fsp~Grl~QvEy-a~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (241)
T 1iru_E 15 FSPEGRLFQVEY-DIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92 (241)
T ss_dssp BCTTSCBHHHHH-HHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCccHHHHH-HHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHH
Confidence 567899999999 4678999999999999999999999999999877 78899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.++++++.|++ .+.++... .|||++++|+||||+.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~------------------~~~~~~l~-~rp~~v~~lvaG~D~~gp~L 153 (241)
T 1iru_E 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGE------------------EDADPGAM-SRPFGVALLFGGVDEKGPQL 153 (241)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCS------------------TTCCSSCB-SSCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------cccccccc-cccceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999877762 11100000 28999999999999888999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~ 443 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.++ ..++++++|++|+++| +++++++
T Consensus 154 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ 232 (241)
T 1iru_E 154 FHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKE 232 (241)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHH
T ss_pred EEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHH
Confidence 9999999999999999999999999999999999999999999999999999998 6789999999999998 7999999
Q ss_pred ccccccC
Q psy10990 444 EIANVKG 450 (486)
Q Consensus 444 eI~~~~~ 450 (486)
||++++.
T Consensus 233 ei~~~~~ 239 (241)
T 1iru_E 233 ELEEVIK 239 (241)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998865
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=302.56 Aligned_cols=204 Identities=30% Similarity=0.392 Sum_probs=189.1
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+++.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.++++.+++.|++.++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999999998877788899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCe
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPF 378 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~ 378 (486)
++++.+++.+++.+|.++ .|||++++++|||| +||+||.+||+|++.++++
T Consensus 82 ~~v~~la~~l~~~~~~~r----------------------------~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 132 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVK----------------------------YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIY 132 (217)
T ss_dssp CCHHHHHHHHHHHHHHTT----------------------------TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESE
T ss_pred CCHHHHHHHHHHHHHhcC----------------------------CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCE
Confidence 999999999999998755 28999999999999 8999999999999999999
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCccccccccCc
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRPYEIANVKGK 451 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~~eI~~~~~~ 451 (486)
+|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|++ +|+++++++||+.++..
T Consensus 133 ~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~ 206 (217)
T 1yar_H 133 ASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRK 206 (217)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999 89999999999988754
|
| >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=307.59 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=203.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 9 fsp~Grl~QvEy-a~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (241)
T 1ryp_D 9 FSPDGHIFQVEY-ALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87 (241)
T ss_dssp CBTTTBCHHHHH-HHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHH
Confidence 567899999999 4678999999999999999999999999999888877899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGA 362 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp 362 (486)
+.+++.|++.++++++++.+++++++++|.+++ . +| .|||++++|+||||+ .||
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~-~~-----~rP~~v~~lvaG~D~~~~gp 143 (241)
T 1ryp_D 88 RVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQ------------------S-GG-----VRPFGVSTLIAGFDPRDDEP 143 (241)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------S-TT-----BCCCSEEEEEEECCTTCCSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcc------------------C-CC-----CCCcceeeEEEEEcCCCCCe
Confidence 999999999999999999999999999998872 1 11 389999999999998 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW---KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~y---k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~ 438 (486)
+||++||+|++.+++++|+|+|+++++++||+.| +++||++||++++++||+.+.+ .++++++|++|+++| ++
T Consensus 144 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~ 220 (241)
T 1ryp_D 144 KLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIV 220 (241)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEE
T ss_pred eEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEE
Confidence 9999999999999999999999999999999999 9999999999999999999985 578999999999995 99
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 221 ~l~~~ei~~~~~ 232 (241)
T 1ryp_D 221 ALSSEEINQYVT 232 (241)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999998864
|
| >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=302.90 Aligned_cols=201 Identities=31% Similarity=0.443 Sum_probs=191.9
Q ss_pred cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 225 GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.+.++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEEc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTMG 382 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~AiG 382 (486)
++++++++|.++ .+||++++|+||||+ .||+||++||+|++.+++ ++|+|
T Consensus 81 a~~l~~~~~~~~----------------------------~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG 132 (219)
T 3h4p_a 81 ATLLSNILHSSR----------------------------MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATG 132 (219)
T ss_dssp HHHHHHHHHHTT----------------------------TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEES
T ss_pred HHHHHHHHHHhc----------------------------CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEc
Confidence 999999998765 289999999999998 789999999999999999 99999
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCC
Q psy10990 383 SGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453 (486)
Q Consensus 383 sGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~ 453 (486)
+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++||+.+++.-+
T Consensus 133 ~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~ 203 (219)
T 3h4p_a 133 SGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMK 203 (219)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653
|
| >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=309.30 Aligned_cols=219 Identities=18% Similarity=0.194 Sum_probs=202.4
Q ss_pred hhHhHHhHhccCCCcccccc-cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~-GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+|+|++|. .++|++ |+|+||++++||||+|+|++.+. .++...+.+||++|++++++++||..+|++.|.+.
T Consensus 16 fsp~Grl~QvEya-~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 93 (246)
T 1iru_A 16 FSPEGRLYQVEYA-FKAINQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 93 (246)
T ss_dssp CCTTSCCHHHHHH-HHHHHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHH
T ss_pred CCCCCeehHHHHH-HHHHhcCCCCEEEEEeCCEEEEEEeecCCC-cccCCCccCceEEECCCEEEEEeccHHHHHHHHHH
Confidence 5678999999995 567777 99999999999999999999884 56667788999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.+++.|++.++++++++.+++.++++++.|++. + | .|||++++|+||||+ .||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~------------------~-~-----~rp~~v~~lvaG~D~~~gp 149 (246)
T 1iru_A 94 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN------------------A-E-----MRPLGCCMILIGIDEEQGP 149 (246)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------S-S-----BCCCSEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcC------------------C-C-----CCCcceEEEEEEEeCCCCe
Confidence 99999999999999999999999999998888731 1 1 289999999999997 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~ 438 (486)
+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||+.+.++| .++++++|++|+++| ++
T Consensus 150 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~ 228 (246)
T 1iru_A 150 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFR 228 (246)
T ss_dssp EEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEE
T ss_pred EEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEE
Confidence 999999999999999999999999999999999999 9999999999999999999999 789999999999999 69
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 229 ~l~~~ei~~~~~ 240 (246)
T 1iru_A 229 ILTEAEIDAHLV 240 (246)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999988764
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=295.53 Aligned_cols=198 Identities=29% Similarity=0.447 Sum_probs=189.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC-eEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP-FCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~-~~AiGsG 384 (486)
+.+++.+|.++ .|||+++++++|||++||+||++||+|++.+++ ++|+|+|
T Consensus 81 ~~l~~~~~~~r----------------------------~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g 132 (202)
T 1j2q_H 81 TLTSNLLNSYR----------------------------YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSG 132 (202)
T ss_dssp HHHHHHHHHTT----------------------------TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTT
T ss_pred HHHHHHHHhhC----------------------------CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCC
Confidence 99999997755 289999999999999899999999999999999 9999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++|++.++..
T Consensus 133 ~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 133 SLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred HHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999899999999999999999999999988754
|
| >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.38 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=204.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++. .+.+||++|++++++++||..+|++.|.+.+
T Consensus 13 fsP~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 88 (263)
T 1iru_F 13 WSPQGRIHQIEYA-MEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFM 88 (263)
T ss_dssp CCTTSCCHHHHHH-HHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHHH-HHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHH
Confidence 5678999999994 67899999999999999999999999988753 3779999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|++|||+.||+|
T Consensus 89 ~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~------------------~~~------~RP~~v~~lvaG~D~~gp~L 144 (263)
T 1iru_F 89 RQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ------------------RYG------RRPYGVGLLIAGYDDMGPHI 144 (263)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH------------------BTT------CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhc------------------ccc------cccceEEEEEEEEcCCCCEE
Confidence 999999999999999999999999999998883 111 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcC-CCCCCceEEEEEEcC-CEEEc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFND-LGSGSNIDLCVIKKN-GVEYL 440 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD-~~sg~~IeI~iItkd-G~~~l 440 (486)
|++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||+.+.++| ..++++++|++|+++ +++++
T Consensus 145 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l 224 (263)
T 1iru_F 145 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 224 (263)
T ss_dssp EEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEE
T ss_pred EEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEEC
Confidence 9999999999999999999999999999999998 9999999999999999999999 478999999999999 79999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++||+.++..-
T Consensus 225 ~~~ei~~~~~~~ 236 (263)
T 1iru_F 225 DDDDVSPFLEGL 236 (263)
T ss_dssp CSGGGHHHHTTC
T ss_pred CHHHHHHHHHHH
Confidence 999999998654
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=313.17 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=204.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .++|++|+|+||++++||||+|+|++.+.++ +...+.+||++|++|+++++||..+|++.|.+.+
T Consensus 19 fSp~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~l-i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~ 96 (264)
T 3h4p_A 19 FSPEGRLYQVEYA-REAVRRGTTAIGIACKDGVVLAVDRRITSKL-VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRA 96 (264)
T ss_dssp CCSSSSCHHHHHH-HHHHHHSCCEEEECCSSEEEEEEECCCCSTT-BCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTH
T ss_pred ECCCCeeHHHHhH-HHHHhcCCcEEEEEECCEEEEEEecCccCCc-cccCccccEEEecCcEEEEeccchHHHHHHHHHH
Confidence 6778999999995 5888999999999999999999999998874 5567899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|.+.++++++++.+++.++++++.|++ .++ .|||++++|+||||+.||+|
T Consensus 97 r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~------------------~~~------~rP~~v~~lvaG~D~~gp~L 152 (264)
T 3h4p_A 97 RLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQ------------------HGG------VRPFGVSLLIAGIDKNEARL 152 (264)
T ss_dssp HHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTS------------------BSS------CCCCSEEEEEEEEETTEEEE
T ss_pred HHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhh------------------ccC------CCCeeEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999988872 111 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--CEEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--GVEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G~~~l~~ 442 (486)
|++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ .++++++|++|+++ +++++++
T Consensus 153 y~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~ 230 (264)
T 3h4p_A 153 FETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV 230 (264)
T ss_dssp EEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred EEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence 9999999999999999999999999999999999999999999999999999977 68999999999976 5999999
Q ss_pred cccccccCcCC
Q psy10990 443 YEIANVKGKKD 453 (486)
Q Consensus 443 ~eI~~~~~~~~ 453 (486)
+||+.++..-+
T Consensus 231 ~ei~~~~~~~~ 241 (264)
T 3h4p_A 231 EEIKKLIEKVK 241 (264)
T ss_dssp TTTGGGTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
| >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=305.97 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=201.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++... .+||++|++++++++||..+|++.|.+.+
T Consensus 11 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 88 (244)
T 1ryp_G 11 FSPDGRNFQVEYA-VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRG 88 (244)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred CCcCCchHHHHhH-HHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHH
Confidence 6778999999994 788999999999999999999999999998887654 49999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++++++..+++++++++|.+++ +++ .|||++++|++|||++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~-------------------~~~-----~rp~~v~~lvaG~D~~gp~L 144 (244)
T 1ryp_G 89 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTL-------------------YNS-----VRPFGVSTIFGGVDKNGAHL 144 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS-------------------CTT-----BCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc-------------------ccC-----ccCceEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999998872 121 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc---CCEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESN---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK---NGVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~---yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk---dG~~ 438 (486)
|++||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||+.+.++|..++.+++|++|++ +|++
T Consensus 145 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~ 224 (244)
T 1ryp_G 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 224 (244)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSE
T ss_pred EEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCee
Confidence 9999999999999999999999999999997 999999999999999999999999998899999999998 8899
Q ss_pred EcCcccccc
Q psy10990 439 YLRPYEIAN 447 (486)
Q Consensus 439 ~l~~~eI~~ 447 (486)
.+.|+++..
T Consensus 225 ~~~~~~~~~ 233 (244)
T 1ryp_G 225 KFVKGDLLQ 233 (244)
T ss_dssp EECCTHHHH
T ss_pred eeChHHHHH
Confidence 888877643
|
| >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=311.04 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=206.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .+++++|+|+||+++++|||+|+|++.+.++++. .+.+||++|++|+++++||..+|++.|.+.+
T Consensus 14 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 91 (254)
T 1iru_G 14 FSPDGRVFQVEYA-MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIA 91 (254)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCcCCccHHHHhH-HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHH
Confidence 6778999999994 6789999999999999999999999999988875 6889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.+++++|.+++ . +| .|||++++|+|||| ..||+
T Consensus 92 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~-~~-----~rP~~v~~lvaG~D~~~gp~ 147 (254)
T 1iru_G 92 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTL------------------Y-SA-----VRPFGCSFMLGSYSVNDGAQ 147 (254)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------B-SS-----BCCCSEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc------------------c-cc-----cccceEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998872 1 11 38999999999999 67899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--C-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--G-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G-~~~l 440 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.+++..++.+++|++|+++ | ++++
T Consensus 148 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l 227 (254)
T 1iru_G 148 LYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIV 227 (254)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEEC
T ss_pred EEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEEC
Confidence 999999999999999999999999999999999999999999999999999998888778889999999987 6 9999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++++++++...
T Consensus 228 ~~~~i~~~~~~~ 239 (254)
T 1iru_G 228 PKDIREEAEKYA 239 (254)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999987654
|
| >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=308.21 Aligned_cols=219 Identities=24% Similarity=0.338 Sum_probs=202.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..+++++|+|+||++++||||+|+|++.+.++ +...+.+||++|++|+++++||..+|++.|.+.+
T Consensus 10 fsp~Grl~QvEY-A~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (248)
T 1iru_D 10 FSPDGHLFQVEY-AQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRA 87 (248)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHH
Confidence 567899999999 56789999999999999999999999998885 4567889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.++++++.+++ .++ .|||++++|+|||| +.||+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~~gp~ 143 (248)
T 1iru_D 88 RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ------------------SNG------RRPFGISALIVGFDFDGTPR 143 (248)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTS------------------BTT------BCCCCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------cCC------cccccEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998882 111 38999999999999 67899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dm--S~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++| |++||++++++||+.+.+ .++++++|++|+++| ++++
T Consensus 144 Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l 220 (248)
T 1iru_D 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKIL 220 (248)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECC
T ss_pred EEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEEC
Confidence 9999999999999999999999999999999999999 999999999999999986 468999999999998 9999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++||+.++..-
T Consensus 221 ~~~ei~~~~~~~ 232 (248)
T 1iru_D 221 NPEEIEKYVAEI 232 (248)
T ss_dssp CHHHHHHHTTTT
T ss_pred CHHHHHHHHHHH
Confidence 999999887644
|
| >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=305.89 Aligned_cols=218 Identities=21% Similarity=0.301 Sum_probs=202.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.+.+. ..+.+||++|++++++++||..+|++.|.+.+
T Consensus 15 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (246)
T 1j2p_A 15 FSPDGRLFQVEYA-REAVKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLIDRA 92 (246)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCSCTTBC-GGGCCSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeehHHHhH-HHHHHcCCcEEEEEECCEEEEEEeccCCccccc-cCccCcEEEECCCEEEEEeEccHHHHHHHHHH
Confidence 6678999999995 678899999999999999999999999887654 67889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++.++.|++ .+ | .|||++++|++||| +||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~------------------~~-~-----~rp~~v~~lvaG~D-~gp~L 147 (246)
T 1j2p_A 93 RIEAQINRLTYDIPITVKELAKKICDFKQQYTQ------------------YG-G-----VRPFGVSLLIAGVN-EVPKL 147 (246)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTS------------------BT-T-----BCCCCEEEEEEEES-SSEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------cc-C-----cccccEEEEEEEEC-CCCEE
Confidence 999999999999999999999999999988872 11 1 38999999999999 89999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE-c-CCEEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK-K-NGVEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt-k-dG~~~l~~ 442 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + ++++++++
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~ 226 (246)
T 1j2p_A 148 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSP 226 (246)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCH
T ss_pred EEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCH
Confidence 9999999999999999999999999999999999999999999999999999988 7789999999999 6 48999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+||+.++.
T Consensus 227 ~ei~~~~~ 234 (246)
T 1j2p_A 227 EELKPYVE 234 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=306.31 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=202.6
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh----
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL---- 293 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l---- 293 (486)
..+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++
T Consensus 34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 113 (266)
T 1g0u_M 34 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 113 (266)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccch
Confidence 3567889999999999999999999999888777888999999999999999999999999999999999999998
Q ss_pred -hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCC
Q psy10990 294 -NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHG 371 (486)
Q Consensus 294 -~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsG 371 (486)
.+++.++++.+++++++++|.++. + .|||++++|++|||+. ||+||++||+|
T Consensus 114 ~~~~~~~~v~~la~~l~~~ly~~r~-------------~-------------~~P~~v~~lvaG~D~~~gp~Ly~idp~G 167 (266)
T 1g0u_M 114 ADAEEALEPSYIFEYLATVMYQRRS-------------K-------------MNPLWNAIIVAGVQSNGDQFLRYVNLLG 167 (266)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHH-------------T-------------TCCCCEEEEEEEECTTSCEEEEEEETTC
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcc-------------C-------------CCCceEEEEEEEEcCCCCEEEEEECCCC
Confidence 899999999999999999876541 0 2899999999999985 89999999999
Q ss_pred ceeecCeEEEcCchhHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcccc
Q psy10990 372 SSDTVPFCTMGSGSLAAMSVFESNWKP-----NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEI 445 (486)
Q Consensus 372 s~~e~~~~AiGsGs~~a~~~Lek~yk~-----dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI 445 (486)
++.+++++|+|+|+++++++||+.|++ +||+|||++++++||+.+.++|..++++++|++|+++ |+++++++||
T Consensus 168 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei 247 (266)
T 1g0u_M 168 VTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 247 (266)
T ss_dssp CEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred CEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999999999999 9999999999
Q ss_pred ccc-cCcCCCCcccc
Q psy10990 446 ANV-KGKKDGDYRFK 459 (486)
Q Consensus 446 ~~~-~~~~~~~~~~~ 459 (486)
+++ |++++....|.
T Consensus 248 ~~~~w~~~~~~~~~~ 262 (266)
T 1g0u_M 248 ENMKWDFAKDIKGYG 262 (266)
T ss_dssp CCCCCGGGGGCCSSS
T ss_pred hhhhhhHHhhhcCcC
Confidence 999 99997777774
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=292.00 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=189.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.+|.++. .||++++++||||+.||+||++||+|++.++++.|+|+|+
T Consensus 81 ~~l~~~~~~~r~----------------------------~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs 132 (204)
T 1iru_L 81 KLLANMVYQYKG----------------------------MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGS 132 (204)
T ss_dssp HHHHHHHHTTTT----------------------------SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTH
T ss_pred HHHHHHHHHhCC----------------------------CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCH
Confidence 999999998871 5899999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.++++|++.+++.
T Consensus 133 ~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 198 (204)
T 1iru_L 133 VYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198 (204)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999998899999999999999999999999988653
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=288.03 Aligned_cols=197 Identities=31% Similarity=0.511 Sum_probs=188.7
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++++|.++ .||+++++++|||+ .||+||.+||+|++.+++++++|+|
T Consensus 81 ~~l~~~~~~~~-----------------------------~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsg 131 (205)
T 1iru_H 81 SLFKEMCYRYR-----------------------------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131 (205)
T ss_dssp HHHHHHHHHTT-----------------------------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGG
T ss_pred HHHHHHHHhcC-----------------------------cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCC
Confidence 99999999888 49999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~~eI~~~~~~ 451 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++| ++.++++||+.+++.
T Consensus 132 s~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp GGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999999999999999999999999999899999999999998 468999999999875
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=289.99 Aligned_cols=195 Identities=24% Similarity=0.367 Sum_probs=187.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999987777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++.+|.+++ .||++++++|||| +.||+||.+||+|++.+++++|+|+|
T Consensus 81 ~~l~~~~~~~~~----------------------------~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsg 132 (212)
T 1ryp_L 81 KILSNLVYQYKG----------------------------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132 (212)
T ss_dssp HHHHHHHHHTTT----------------------------SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTT
T ss_pred HHHHHHHHhhCC----------------------------CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCC
Confidence 999999998882 5899999999999 56899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++|++.+
T Consensus 133 s~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~ 196 (212)
T 1ryp_L 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGEL 196 (212)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988
|
| >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=300.65 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=199.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+ +.++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 89 (250)
T 1ryp_B 12 FSPSGKLGQIDYA-LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89 (250)
T ss_dssp BCTTSCBHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCccHHHHhH-HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHH
Confidence 5678999999994 6789999999999999999999999987 4566777899999999999999999999999999999
Q ss_pred HHHHHH-hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 285 ASQLEL-LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 285 r~~l~~-~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
+.+++. |...++..++++.+++.++++++.+++. .| .|||++++|+||||+ .||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~-------------------~~-----~rp~~v~~lvaG~D~~~gp 145 (250)
T 1ryp_B 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQS-------------------GG-----VRPFGVSLLIAGHDEFNGF 145 (250)
T ss_dssp HHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTS-------------------BT-----BCCCCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-------------------CC-----cccceEEEEEEEEcCCCCc
Confidence 999999 9999999999999999999998877721 01 389999999999997 689
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-------
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN------- 435 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd------- 435 (486)
+||++||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.+++. ++++++|++|+++
T Consensus 146 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~~~~~ 224 (250)
T 1ryp_B 146 SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGY 224 (250)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSE
T ss_pred EEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998865 7999999999986
Q ss_pred ---------CEEEcCccccccccC
Q psy10990 436 ---------GVEYLRPYEIANVKG 450 (486)
Q Consensus 436 ---------G~~~l~~~eI~~~~~ 450 (486)
++++++++||+.++.
T Consensus 225 ~~~~~~~~~~~~~l~~~ei~~~l~ 248 (250)
T 1ryp_B 225 TGIPTDKGPRFRKLTSQEINDRLE 248 (250)
T ss_dssp ESCSSCCCCSEEECCHHHHHHHHT
T ss_pred cccccCCCCCeEECCHHHHHHHHH
Confidence 288999999988764
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=285.17 Aligned_cols=193 Identities=19% Similarity=0.282 Sum_probs=182.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeecCeEEEcC
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTVPFCTMGS 383 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~~~~AiGs 383 (486)
+.+++.+|.+++ + .+||+++++++|||+ .||+||.+||+|++.+++++|+|+
T Consensus 82 ~~l~~~l~~~~~--------------------~------r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~ 135 (198)
T 1ryp_K 82 SFVRQELAKSIR--------------------S------RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135 (198)
T ss_dssp HHHHHHHHHHTT--------------------S------SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTT
T ss_pred HHHHHHHHHhcc--------------------c------CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcc
Confidence 999999987761 0 149999999999995 789999999999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.+++++
T Consensus 136 g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999998865
|
| >3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=306.98 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=198.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+|||++| ..++|++|+|+||+++++|||+|+|++.+.++++.. +.+||++|++|+++++||..+|++.|.+++
T Consensus 15 fSP~Grl~QvEY-A~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~l 92 (288)
T 3nzj_F 15 FSPDGRNFQVEY-AVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRG 92 (288)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCchHHHHH-HHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHH
Confidence 677899999999 578899999999999999999999999999887765 679999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++++++..+++++++++|.|++ .++ .|||+|++|+||||..||+|
T Consensus 93 r~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~------------------~~~------~rP~gv~~lvaG~D~~Gp~L 148 (288)
T 3nzj_F 93 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTL------------------YNS------VRPFGVSTIFGGVDKNGAHL 148 (288)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------CTT------BCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH------------------hcc------CCCceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999998882 111 38999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc---CCEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESN---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK---NGVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~---yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk---dG~~ 438 (486)
|++||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||..+.+++..++.+++|++|++ ++.+
T Consensus 149 y~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~ 228 (288)
T 3nzj_F 149 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 228 (288)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCC
T ss_pred EEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceE
Confidence 9999999999999999999999999999999 999999999999999999999999988889999999999 3555
Q ss_pred EcCcccc
Q psy10990 439 YLRPYEI 445 (486)
Q Consensus 439 ~l~~~eI 445 (486)
..-|.++
T Consensus 229 ~~vp~~~ 235 (288)
T 3nzj_F 229 KFVKGDL 235 (288)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 5555544
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=283.99 Aligned_cols=193 Identities=30% Similarity=0.553 Sum_probs=182.9
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5788999999999999999999999999887777888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP 377 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~ 377 (486)
++++.+++.+++.+|.+++ + |+++++++|||+ .||+||.+||+|++.+++
T Consensus 82 ~~v~~la~~l~~~~~~~~~----------------------------~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~ 132 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKD----------------------------N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLP 132 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTT----------------------------T-CCEEEEEEEEETTTEEEEEEECTTSCCEEES
T ss_pred CCHHHHHHHHHHHHHhhhc----------------------------C-ceEEEEEEEEecCCCcEEEEECCCccEEecC
Confidence 9999999999999998881 3 789999999997 789999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++...
T Consensus 133 ~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 133 YAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp EEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred EEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999989999999999999976543
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=282.79 Aligned_cols=193 Identities=19% Similarity=0.297 Sum_probs=182.0
Q ss_pred ccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy10990 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP 299 (486)
Q Consensus 220 ~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~ 299 (486)
+.+++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.+++++
T Consensus 4 p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (213)
T 1iru_M 4 PYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAM 83 (213)
T ss_dssp SCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeecCe
Q psy10990 300 RVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPF 378 (486)
Q Consensus 300 ~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~~~ 378 (486)
+++.+++.+++.+|.++ .|||++++|++|||.+| |+||.+||+|++.++++
T Consensus 84 ~v~~la~~l~~~~y~~r----------------------------~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~ 135 (213)
T 1iru_M 84 TTGAIAAMLSTILYSRR----------------------------FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSF 135 (213)
T ss_dssp CHHHHHHHHHHHHHHTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESE
T ss_pred CHHHHHHHHHHHHHhhC----------------------------CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCE
Confidence 99999999999986443 18999999999999755 99999999999999999
Q ss_pred EEEcCchhHHHHHHHhc---------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 379 CTMGSGSLAAMSVFESN---------WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~---------yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
+|+|+|+++++++||+. |+++||+|||++++++||+.+.++|..++++++|++|+++|++..
T Consensus 136 ~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 136 KAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp EEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred EEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 99999999999999999 889999999999999999999999999999999999999997654
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=280.98 Aligned_cols=194 Identities=30% Similarity=0.497 Sum_probs=183.1
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999988778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEEcC
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTMGS 383 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~AiGs 383 (486)
+++++++|.++ +||++++|+||||+ .+|+||+ |+|++.++. +.++|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gs 129 (199)
T 3unf_N 81 NVVKNISYKYR-----------------------------EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGS 129 (199)
T ss_dssp HHHHHHHHHTT-----------------------------TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEG
T ss_pred HHHHHHHHhcC-----------------------------CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEcc
Confidence 99999998776 79999999999998 6799999 999976555 666799
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCccccccccC
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRPYEIANVKG 450 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~~eI~~~~~ 450 (486)
|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++| ++.++++||+.+|+
T Consensus 130 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 130 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp GGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999 67799999999986
|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=282.42 Aligned_cols=194 Identities=21% Similarity=0.308 Sum_probs=182.5
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC-C
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG-K 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g-~ 297 (486)
.+.+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.++ +
T Consensus 3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (222)
T 1ryp_M 3 NPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK 82 (222)
T ss_dssp CCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999999888888999999999999999999999999999999999999999999 9
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeec
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTV 376 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~ 376 (486)
.++++.+++.+++.+|.++ .+||++++|+||||.+| |+||++||+|++.++
T Consensus 83 ~~~v~~la~~l~~~ly~~r----------------------------~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~ 134 (222)
T 1ryp_M 83 KLSINSAARNIQHLLYGKR----------------------------FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYERE 134 (222)
T ss_dssp CCCHHHHHHHHHHHHHTTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHHhcC----------------------------CCCceEEEEEEEEcCCCCeEEEEECCCcCEEec
Confidence 9999999999999986544 17999999999999755 999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhc-----------------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 377 PFCTMGSGSLAAMSVFESN-----------------WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~-----------------yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+++|+|+|+++++++||+. |+++||+|||++++++||..+.++|..++++++|++|+++|++.
T Consensus 135 ~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 135 QCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp SEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 9999999999999999998 88999999999999999999999999999999999999999765
Q ss_pred c
Q psy10990 440 L 440 (486)
Q Consensus 440 l 440 (486)
.
T Consensus 215 ~ 215 (222)
T 1ryp_M 215 E 215 (222)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=275.02 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=178.7
Q ss_pred cccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 221 aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
-+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 1iru_J 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIK 83 (205)
T ss_dssp TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred ccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 35789999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeec-C
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTV-P 377 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~-~ 377 (486)
++.+++.+++.+|.++ + .||+++++++|||. +||+||++||+|++.++ .
T Consensus 84 v~~la~~l~~~~y~~r----------------------~------~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~ 135 (205)
T 1iru_J 84 PYTLMSMVANLLYEKR----------------------F------GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDD 135 (205)
T ss_dssp HHHHHHHHHHHHHTTT----------------------T------SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSS
T ss_pred HHHHHHHHHHHHHHhc----------------------C------CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCC
Confidence 9999999999985433 1 59999999999995 78999999999998665 5
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 136 ~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 136 FVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp EEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred eeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999764
|
| >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=286.60 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=180.2
Q ss_pred ccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 214 le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
.+| ..++|++|+|+||++++||||+|+|++ ..+.+||++|++|+++++||..+|++.|.+.++.+++.|++
T Consensus 17 ~EY-A~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 17 SEL-ARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHH-HHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 345 467899999999999999999999998 24789999999999999999999999999999999999999
Q ss_pred hcC-CCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC----CCceEEEE
Q psy10990 294 NTG-KIPRVITANRLLR-QMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD----TGAHLFNI 367 (486)
Q Consensus 294 ~~g-~~~~v~~la~~ls-~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~----~Gp~Ly~i 367 (486)
.++ ++++++.+++.++ .+.+.|++. .|||+|++|++|||. .||+||++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~~--------------------------~rP~gv~~liaG~D~~~~~~gp~Ly~~ 141 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTEQ--------------------------AKPYEVELCVAEVAHYGETKRPELYRI 141 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHHS--------------------------SSCCCEEEEEEECCCTTCCCCCEEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccC--------------------------CCCceEEEEEEEEcCCCCCCCCEEEEE
Confidence 999 8999999999999 556666620 289999999999998 78999999
Q ss_pred ccCCcee-ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-------hcCCCCCCceEEEEEEcCC---
Q psy10990 368 YPHGSSD-TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV-------FNDLGSGSNIDLCVIKKNG--- 436 (486)
Q Consensus 368 DpsGs~~-e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~-------~rD~~sg~~IeI~iItkdG--- 436 (486)
||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||+.+. +++ .++++++|++|+++|
T Consensus 142 Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~ 220 (248)
T 3mi0_A 142 TYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRR 220 (248)
T ss_dssp CTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSC
T ss_pred CCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcc
Confidence 9999999 4999999999999999999999999999999999999999998 555 578999999999998
Q ss_pred -EEEcCccccccccCcC
Q psy10990 437 -VEYLRPYEIANVKGKK 452 (486)
Q Consensus 437 -~~~l~~~eI~~~~~~~ 452 (486)
+++++++||+.++..-
T Consensus 221 ~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 221 AFRRITGSALQALLVDQ 237 (248)
T ss_dssp CEEECCHHHHHHTC---
T ss_pred cEEECCHHHHHHHHHHc
Confidence 9999999999998653
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=274.60 Aligned_cols=191 Identities=21% Similarity=0.316 Sum_probs=177.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcC
Q psy10990 306 RLLRQML-FRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGS 383 (486)
Q Consensus 306 ~~ls~~l-~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGs 383 (486)
+++++.+ +..+ + .+||+++++++|||+ .||+||.+||+|++.+++++|+|+
T Consensus 82 ~~~~~~l~~~~~---------------------~------~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGs 134 (201)
T 1iru_K 82 NFTRRNLADCLR---------------------S------RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGY 134 (201)
T ss_dssp HHHHHHHHHHHT---------------------S------SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESH
T ss_pred HHHHHHHHHHHh---------------------c------CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECC
Confidence 8887754 2211 1 169999999999997 689999999999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcc
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~ 443 (486)
|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.++++
T Consensus 135 gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~ 194 (201)
T 1iru_K 135 GAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194 (201)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred cHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence 999999999999999999999999999999999999999999999999999999988764
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=282.58 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=186.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 58999999999999999999987778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-C-----ceEEEEccCCceeec--C
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-G-----AHLFNIYPHGSSDTV--P 377 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-G-----p~Ly~iDpsGs~~e~--~ 377 (486)
+.+++++|.+++. + .|||++++|+||||.. + |+||++||+|++.++ +
T Consensus 81 ~~l~~~~~~~~~~------------~-------------~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~ 135 (235)
T 1q5q_H 81 NRLASMVRGNLGA------------A-------------MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 135 (235)
T ss_dssp HHHHHHHHTTHHH------------H-------------TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSS
T ss_pred HHHHHHHHHHHHh------------h-------------hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCC
Confidence 9999999988732 0 2899999999999986 7 999999999999999 9
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc--e-----EEEEEEcCCEEEcCccccccccC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN--I-----DLCVIKKNGVEYLRPYEIANVKG 450 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~--I-----eI~iItkdG~~~l~~~eI~~~~~ 450 (486)
++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..+++. + +|++|+++|+++++++|++.++.
T Consensus 136 ~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~ 215 (235)
T 1q5q_H 136 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR 215 (235)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred eEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877642 3 99999999999999999998865
Q ss_pred c
Q psy10990 451 K 451 (486)
Q Consensus 451 ~ 451 (486)
.
T Consensus 216 ~ 216 (235)
T 1q5q_H 216 R 216 (235)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=272.43 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=178.5
Q ss_pred ccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy10990 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP 299 (486)
Q Consensus 220 ~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~ 299 (486)
+.+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|+ ++++++||..+|++.|.+.++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 34678999999999999999999999999988888999999999 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeec-
Q psy10990 300 RVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTV- 376 (486)
Q Consensus 300 ~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~- 376 (486)
+++.+++.+++.+|.++ + .||+++++++|||. +||+||.+||+|++.++
T Consensus 82 ~v~~la~~l~~~~y~~~----------------------~------~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~ 133 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERR----------------------F------GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAK 133 (204)
T ss_dssp CHHHHHHHHHHHHHTTT----------------------T------SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCS
T ss_pred CHHHHHHHHHHHHHHhc----------------------C------CCceEEEEEEEEeCCCCceEEEEECCCCCccccC
Confidence 99999999999985443 1 59999999999996 78999999999998665
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
.++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 134 ~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 134 DFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp SEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred ceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 679999999999999999999999999999999999999999999899999999999999764
|
| >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=285.85 Aligned_cols=212 Identities=11% Similarity=0.159 Sum_probs=187.8
Q ss_pred hhHhHHh-HhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFL-ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L-~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
++++..+ +|++|. .++|++|+|+||++++||||+|+|++ ..+.+||++|++|+++++||..+|++.|.+.
T Consensus 7 ~sPe~~~~~qvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 7 ASAEQIMRDRSELA-RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp --CHHHHHHHHHHH-HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 3556666 478885 57899999999999999999999998 2578999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCC-CCcHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc---
Q psy10990 284 IASQLELLKLNTGK-IPRVITANRLLRQ-MLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD--- 358 (486)
Q Consensus 284 lr~~l~~~~l~~g~-~~~v~~la~~ls~-~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D--- 358 (486)
++.+++.|.+.++. +++++.+++.+++ +.+.|+. + .|||+|++|+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~---------------------~-----~rP~~v~~lvaG~D~~~ 131 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE---------------------Q-----PKPYEVEICVAEVGRVG 131 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH---------------------S-----SSCCCEEEEEEECCCSS
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc---------------------C-----CCCceEEEEEEEEcccC
Confidence 99999999988884 8999999999999 4444541 0 28999999999999
Q ss_pred -CCCceEEEEccCCcee-ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-----hcCCCCCCceEEEE
Q psy10990 359 -DTGAHLFNIYPHGSSD-TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV-----FNDLGSGSNIDLCV 431 (486)
Q Consensus 359 -~~Gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~-----~rD~~sg~~IeI~i 431 (486)
..||+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||+.+. ++|. ++.+++|++
T Consensus 132 ~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~v 210 (259)
T 1q5q_A 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAV 210 (259)
T ss_dssp CCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEE
T ss_pred CCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEE
Confidence 6889999999999999 8899999999999999999999999999999999999999999 8998 899999999
Q ss_pred EEcC----CEEEcCccccccccCcC
Q psy10990 432 IKKN----GVEYLRPYEIANVKGKK 452 (486)
Q Consensus 432 Itkd----G~~~l~~~eI~~~~~~~ 452 (486)
|+++ +++.++++||+.++..-
T Consensus 211 i~~~~~~~~~~~l~~~ei~~~~~~~ 235 (259)
T 1q5q_A 211 LDQSRPRRAFRRIAGTALEQLVPAE 235 (259)
T ss_dssp EETTSSSCCEEECCHHHHHTTSCCC
T ss_pred EECCCCcCCeEECCHHHHHHHHHHh
Confidence 9999 79999999999887643
|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=222.28 Aligned_cols=170 Identities=18% Similarity=0.127 Sum_probs=146.3
Q ss_pred cccceeeEEEecCeEEEEEeCCCCcCee-eecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 223 KTGTTIVGAIFADGVVLGADTRATDDTI-VAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 223 ~~GtTiIgI~~kdGVVlAaDtr~t~g~l-i~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
.+|+|+||++++||||+|+|++.+.+.+ +...+.+||++| ++|+++++||..+|++.|.++++.+++.|+ + +.
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999998766 778899999999 999999999999999999999999999887 2 22
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceee--cCe
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDT--VPF 378 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e--~~~ 378 (486)
+...+ .+++.+..+. + .|||++++|++ ++|+||++||+|++.+ +++
T Consensus 78 ~~~~~-~l~~~~~~~~--------------------~-------~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~ 125 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDK--------------------V-------LRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGI 125 (180)
T ss_dssp HHHHH-HHHHHHHHCT--------------------T-------GGGCCCCEEEE----CSSCEEEECTTCCEECCSSSE
T ss_pred HHHHH-HHHHHHHhhh--------------------C-------cCcceEEEEEE----cCCeEEEECCCCcEEEeCCCE
Confidence 22222 2333222111 1 38999999998 3799999999999998 599
Q ss_pred EEEcCchhHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 379 CTMGSGSLAAMSVFESNWKP---NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~---dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+|+|+++++++||+.|++ +||.|| ++++||+.+.++|..++++++|.+|
T Consensus 126 ~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 126 LAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp EEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred EEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999999999999999998 999999 4779999999999999999999988
|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=218.38 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=144.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++| ++|+++++||..+|++.|.++++.+++.|++ .....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 5899999999999999999998877888899999999 9999999999999999999999999998875 22333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC---eEEE
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP---FCTM 381 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~---~~Ai 381 (486)
+..+++.++.++ ..||++ .+++|+| +|+||++||+|++.+++ ++|+
T Consensus 75 ~~~l~~~~~~~~---------------------------~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~ 123 (174)
T 1g3k_A 75 AVELAKDWRTDR---------------------------ALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAI 123 (174)
T ss_dssp HHHHHHHHHHST---------------------------TGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEE
T ss_pred HHHHHHHHHhcc---------------------------CcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEE
Confidence 344444433222 026764 5677887 79999999999999988 9999
Q ss_pred cCchhHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 382 GSGSLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|+|+++++++||+.|+ ++||.+ +++++||+.+.++|..++++++|++|+
T Consensus 124 Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 124 GSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp STTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred cccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 9999999999999999 999954 799999999999999999999999985
|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=217.98 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=144.0
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++| ++|+++++||..+|++.+.++++.+++.|+++ .+..+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 5899999999999999999998877888899999999 99999999999999999999999999988754 23333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC--eEEEc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP--FCTMG 382 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~--~~AiG 382 (486)
++..+ .++.++ ..|||+++++++ | ||+||++||+|++.+++ +.|+|
T Consensus 76 ~~l~~-~~~~~~---------------------------~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~G 123 (171)
T 1m4y_A 76 VELAK-DWRTDR---------------------------VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIG 123 (171)
T ss_dssp HHHHH-HHHHCT---------------------------TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEES
T ss_pred HHHHH-HHHHhC---------------------------CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEEC
Confidence 33322 222111 127899998887 5 89999999999999987 99999
Q ss_pred CchhHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 383 SGSLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 383 sGs~~a~~~Lek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+++++++||+.|+ ++||. ++++++||+.+.+||..++++++|.++
T Consensus 124 sgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 124 SGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp TTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred CcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999999999 99996 678999999999999999999999864
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-18 Score=164.24 Aligned_cols=162 Identities=21% Similarity=0.234 Sum_probs=122.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~ 219 (486)
++++++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 577899999999999999999999999999999999999999986 66666666 2234567788877777
Q ss_pred ccccccceeeEEE-------e-cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-------F-ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 220 ~aV~~GtTiIgI~-------~-kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
.++...+..++-. + ...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~---- 152 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVH-----KLPYAIAGSGSTFIYGYCDKNFR---- 152 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCE-----EESEEEESGGGGGGHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEE-----ecCEEEEEecHHHHHHHHHhccC----
Confidence 6666555544321 1 23455567852 3355566666542 35678899999999999888542
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 290 LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 290 ~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+++ .+||.+|+++|+..++.||..||+++++
T Consensus 153 -------~~~s----------------~eea~~l~~~al~~a~~~d~~sg~~i~v 184 (205)
T 1ryp_H 153 -------ENMS----------------KEETVDFIKHSLSQAIKWDGSSGGVIRM 184 (205)
T ss_dssp -------TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred -------CCCC----------------HHHHHHHHHHHHHHHHHhCCccCCeEEE
Confidence 3333 8999999999999999999999977653
|
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-18 Score=166.63 Aligned_cols=157 Identities=31% Similarity=0.403 Sum_probs=120.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|.|.+|++++++||++++ ++.++.|| ..+..++.+|++.++.+.++...+
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999985 66666666 233456788888888877776655
Q ss_pred eeeEEEe--------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++-.. ...++.|.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY-----SRLPFTALGSGQGAAVALLEDRF-----------QP 144 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEEETTHHHHHHHHHHHC-----------CS
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCE-----EeccEEEEcCCchhhHHHHHhcc-----------CC
Confidence 5554211 224566688643 34455555554 34778899999999999988844 23
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ .|||.+|+++|+.+++.||.+||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~~~~~D~~sg~~iev~ 176 (234)
T 3unf_H 145 NMT----------------LEAAQELLVEAITAGILSDLGSGGNVDAC 176 (234)
T ss_dssp SCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 443 89999999999999999999999887654
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-18 Score=163.40 Aligned_cols=163 Identities=23% Similarity=0.185 Sum_probs=117.3
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~ 219 (486)
++++++|||+||++++||||||+|+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+.+++.+
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 456789999999999999999999999999999999999999986 66666666 22344677888888877
Q ss_pred ccccccceeeEEE-e--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-F--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 220 ~aV~~GtTiIgI~-~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
.++...+..++-. + ...++.+.|..+..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D~gp~Ly~idp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~----- 151 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSV-----EDIYASTGSGSPFVYGVLESQYS----- 151 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEESSSEEEEEECTTCCEE-----EESEEEESTTHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEECCCCEEEEECCCCCeE-----ecCEEEEcCCHHHHHHHHHhhcc-----
Confidence 7777666655422 1 124555678222344455555542 23688899999999998888542
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..++ .|||.+++.+|+..++.||..||+++++
T Consensus 152 ------~~~s----------------~eea~~la~~al~~~~~rd~~s~~~i~v 183 (217)
T 1yar_H 152 ------EKMT----------------VDEGVDLVIRAISAAKQRDSASGGMIDV 183 (217)
T ss_dssp ------TTCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred ------cCCC----------------HHHHHHHHHHHHHHHHhccCCCCCcEEE
Confidence 2333 8999999999999999999999877653
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-17 Score=160.54 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=123.4
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-cCCC
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK-GYSG 218 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l-e~~~ 218 (486)
.+++++|||+|||+++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+. +++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999999999999986 66666666 223456778887 8887
Q ss_pred cccccccceeeEEE-e----------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 219 PTARKTGTTIVGAI-F----------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 219 ~~aV~~GtTiIgI~-~----------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+.++...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++.
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA-----YEAPSLATGYGAYLAQPLLREVLEK 156 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE-----EECSEEECTTHHHHTHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCe-----EECCeEEECccHHHHHHHHHhhcCC
Confidence 77766666555421 1 124555688542 24445555544 2357788899999999998885532
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+++|+..++.+|..||+++++
T Consensus 157 ---------~~~mt----------------~eea~~l~~~al~~~~~~d~~sg~~i~v 189 (219)
T 1iru_N 157 ---------QPVLS----------------QTEARDLVERCMRVLYYRDARSYNRFQT 189 (219)
T ss_dssp ---------CSCCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred ---------CCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 01333 8999999999999999999999977653
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=157.28 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=121.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
..+|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 578999999999999999999999999999999999999986 66666666 22345678888888877777
Q ss_pred cccceeeEEE-e--------cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-F--------ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~-~--------kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
...+..++-. + ...++.+.|. . +..+.+++.++. + -...+.+.|+|+......|++.+
T Consensus 85 ~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~--~--~~~~~~aiG~gs~~a~~~Le~~~------ 154 (205)
T 1iru_J 85 YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP--M--VTDDFVVSGTCAEQMYGMCESLW------ 154 (205)
T ss_dssp HHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCE--E--ECSSEEEEETTHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCc--c--ccCCeeEeeeCHHHHHHHHhccc------
Confidence 7666655421 2 2346667884 2 234445555543 1 12456788999999999888744
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .|||.+|+.+|+.+++.+|..||+++++
T Consensus 155 -----~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 187 (205)
T 1iru_J 155 -----EPNMD----------------PDHLFETISQAMLNAVDRDAVSGMGVIV 187 (205)
T ss_dssp -----CSSCC----------------HHHHHHHHHHHHHHHGGGBTTSCSCEEE
T ss_pred -----CCCCC----------------HHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence 23343 8999999999999999999999977653
|
| >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-17 Score=154.32 Aligned_cols=157 Identities=25% Similarity=0.212 Sum_probs=120.7
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccccccc
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~G 225 (486)
|||+||++++||||||+|+|+|+|.+|.+++++||++++ ++.++.|| ..+..++.+|+..++.+.++...
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 899999999999999999999999999999999999986 66666666 22345678888888888887777
Q ss_pred ceeeEEEe---------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 226 TTIVGAIF---------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 226 tTiIgI~~---------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
+..++-.. ...+|.+.|. . +..+.+++.++. +..+ ..+.|+|+......|++.+
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~~aiG~gs~~a~~~Le~~~--------- 146 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM-----NEEKTFTATGSGSPIAYGVLEAGY--------- 146 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCE-----EECSSEEEESTTHHHHHHHHHTSC---------
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCce-----EecCCEEEEcCCHHHHHHHHHHhc---------
Confidence 77665221 2456767886 2 234555565554 2355 8899999988888888733
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+.+|+..++.+|..||+++++
T Consensus 147 --~~~ms----------------~eea~~la~~al~~~~~rd~~sg~~i~v 179 (219)
T 3h4p_a 147 --DRDMS----------------VEEGIKLALNALKSAMERDTFSGNGISL 179 (219)
T ss_dssp --CTTCC----------------HHHHHHHHHHHHHHHHTSCSSCCSCCCE
T ss_pred --CCCCC----------------HHHHHHHHHHHHHHHHhhcCCCCCcEEE
Confidence 33443 8999999999999999999999977654
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-17 Score=155.75 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=119.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
-..+|||+||++++||||||+|+|+|.|.++.+++++||++++++.++.|| ..+..++.+|+.+++.+.++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeCCEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 357899999999999999999999999999999999999999966666666 22345677888888877777
Q ss_pred cccceeeEEE-e--------cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-F--------ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~-~--------kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
...+..++-. + ...++.+.|. . +..+.+++.++.- -...+.+.|+|+......|++.+
T Consensus 84 ~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~----~~~~~~aiG~gs~~a~~~Le~~~------ 153 (204)
T 1ryp_J 84 ETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCID----EAKDFIVSGTASDQLFGMCESLY------ 153 (204)
T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEE----CCSSEEEEETTHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCcc----ccCceeEeccCHHHHHHHHhhhc------
Confidence 7655555421 2 1235556784 2 2344455555430 12356778999999998888844
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...++ .|||.+|+.+|+..++.+|..||++++
T Consensus 154 -----~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~ 185 (204)
T 1ryp_J 154 -----EPNLE----------------PEDLFETISQALLNAADRDALSGWGAV 185 (204)
T ss_dssp -----CSSCC----------------HHHHHHHHHHHHHHHHTTBTTSCSCEE
T ss_pred -----CCCcC----------------HHHHHHHHHHHHHHHHHhCcccCCcEE
Confidence 23343 899999999999999999999987654
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-17 Score=161.92 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=123.2
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-----
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK----- 214 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l----- 214 (486)
.+++++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 467899999999999999999999999999999999999999986 66666666 223446778888
Q ss_pred cCCCcccccccceeeEEE-e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 215 GYSGPTARKTGTTIVGAI-F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~-~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
.++.+.++...+..++-. + ...+|.+.|.. +..+.+++.++. ...+..+.|+|+......|+
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le 156 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT-----YSSPTLATGFGAHMANPLLR 156 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE-----ECCSEEECTHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCe-----EEcCEEEECcCHHHHHHHHH
Confidence 788777776666555421 1 12455567864 335556666654 34577788899988888887
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.++..-. ..++ +.|||.+|+++|+..++.||..||+++++
T Consensus 157 ~~~~~~~~------~~~m----------------s~eea~~la~~al~~~~~rd~~sg~~i~v 197 (233)
T 1ryp_N 157 KVVDRESD------IPKT----------------TVQVAEEAIVNAMRVLYYRDARSSRNFSL 197 (233)
T ss_dssp TTCSSGGG------GGGC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred Hhhccccc------cCCC----------------CHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 74422000 0023 48999999999999999999999976653
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=153.02 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=122.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
.+++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.+
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999999999986 66666666 2234467788888887777
Q ss_pred ccccceeeEEE-e--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-F--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 222 V~~GtTiIgI~-~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
+...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++.+-+.
T Consensus 85 v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~-----~~~~~~aiGsg~~~a~~~Le~~~~~~~~~ 159 (213)
T 1iru_M 85 TGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY-----QRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE-----EEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCE-----EECCEEEEeeCHHHHHHHHhhcccccccc
Confidence 77655555421 2 124555678543 34455555554 23568889999999999888743210000
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
-.+...++ .|||.+|+.+|+..++.+|..||++++
T Consensus 160 --~~~~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~ 194 (213)
T 1iru_M 160 --NVEHVPLS----------------LDRAMRLVKDVFISAAERDVYTGDALR 194 (213)
T ss_dssp --SCCCCCCC----------------HHHHHHHHHHHHHHHHHHBTTSCSEEE
T ss_pred --ccCCCCCC----------------HHHHHHHHHHHHHHHHHhCCccCCcEE
Confidence 00233443 899999999999999999999987654
|
| >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-17 Score=157.96 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=118.5
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.| ++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (233)
T 1yar_A 29 EAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLV 107 (233)
T ss_dssp HHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 45689999999999999999999999997 68889999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...++.|.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 108 ~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 181 (233)
T 1yar_A 108 NIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTI-----NEYKATAIGSGKDAVVSFLEREYK- 181 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCE-----EeeeEEEEcCCcHHHHHHHHHHhc-
Confidence 7766665554211 12355567853 234455555554 345788899999999998888442
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+.+|+..++.+|. +|++++
T Consensus 182 ----------~~~s----------------~eea~~la~~al~~~~~~d~-s~~~i~ 211 (233)
T 1yar_A 182 ----------ENLP----------------EKEAVTLGIKALKSSLEEGE-ELKAPE 211 (233)
T ss_dssp ----------TTCC----------------HHHHHHHHHHHHHHTSCSSC-CCCCCE
T ss_pred ----------cCCC----------------HHHHHHHHHHHHHHHhhccC-CCCcEE
Confidence 2333 89999999999999999998 776664
|
| >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-17 Score=161.64 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=123.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++.+|+..++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 105 (261)
T 1iru_C 26 EAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105 (261)
T ss_dssp HHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEE------------e-cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI------------F-ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~------------~-kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-. + ...+|.|.|. . +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 106 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 180 (261)
T 1iru_C 106 PCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY-----GGWKATCIGNNSAAAVSMLKQDYK 180 (261)
T ss_dssp CHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE-----EECSEEEESTTTTHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceE-----EeeeeEEeCcccHHHHHHHHHhhc
Confidence 777666666422 1 1245556784 2 335556666554 345788999999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.. .++ .+||.+|+.+|+..++.+|..+|++++
T Consensus 181 ~~----------~ms----------------~eeA~~la~~al~~~~~~d~~sg~~i~ 212 (261)
T 1iru_C 181 EG----------EMT----------------LKSALALAIKVLNKTMDVSKLSAEKVE 212 (261)
T ss_dssp TT----------CCC----------------HHHHHHHHHHHHHHSSSCTTCCSTTCE
T ss_pred cC----------CCC----------------HHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 20 343 899999999999999999999987764
|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=153.90 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=124.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCC-Ccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYS-GPT 220 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~-~~~ 220 (486)
.+++|||+|||+++||||||+|+|+|.|.+|.+++++||++++ ++.++.|| ..+..++.+|+.+++ .+.
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4689999999999999999999999999999999999999986 66666666 223456788888888 777
Q ss_pred cccccceeeEEE-e--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-F--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 221 aV~~GtTiIgI~-~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
++...+..++-. + ...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++..-.
T Consensus 85 ~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~-----~~~~~a~Gsg~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 85 SINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYE-----REQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEE-----EESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEE-----ecCEEEEcCcHHHHHHHHhcccccccc
Confidence 777666666522 2 124555678543 355566666542 356788999998888888874321100
Q ss_pred Hh------HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 290 LL------KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 290 ~~------~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.. .-.+..+++ .|||.+|+++|+.+++.||..||+++++
T Consensus 160 ~~~~~~~~~~~~~~~~s----------------~eeA~~la~~al~~a~~rd~~sg~~i~v 204 (222)
T 1ryp_M 160 YEPGTNGKVKKPLKYLS----------------VEEVIKLVRDSFTSATERHIQVGDGLEI 204 (222)
T ss_dssp BCTTSTTCSBCCCCCCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred cccccccccccCCCCCC----------------HHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 00 000233444 8999999999999999999999976543
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=155.00 Aligned_cols=157 Identities=38% Similarity=0.481 Sum_probs=119.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+++++.+.++...+
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777776655
Q ss_pred eeeEEE-ec-------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAI-FA-------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~-~k-------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
+.++-. +. ..++.|.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST-----DKLPYVTMGSGSLAAMAVFEDKF-----------RP 144 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHSC-----------CT
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCE-----EecCEEEECCchHHHHHHHHHhc-----------cC
Confidence 555422 11 23555678533 34455555554 34678889999999999888843 33
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ .+||.+|+.+|+.+++.+|.+||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~a~~~d~~sg~~i~v~ 176 (234)
T 1iru_I 145 DME----------------EEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176 (234)
T ss_dssp TCC----------------HHHHHTHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 343 89999999999999999999999887644
|
| >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-17 Score=157.92 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=121.7
Q ss_pred ccccc-cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 151 TARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 151 ~~~~t-GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
+++++ |||+||++++||||||||+|++ |.++.+++++||++++ ++.++.|| + .+..++.+|++.++.+
T Consensus 24 ~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~ 102 (243)
T 1ryp_A 24 KATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYD 102 (243)
T ss_dssp HHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34678 9999999999999999999999 8999999999999986 66666666 2 2244677888888888
Q ss_pred ccccccceeeEEEe-------------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAIF-------------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 220 ~aV~~GtTiIgI~~-------------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
.++...+..++-.. ...+|.|.|. . +..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 103 ~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~-----~~~~~~a~G~gs~~a~~~Le~~~ 177 (243)
T 1ryp_A 103 MPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY-----VGYKATATGPKQQEITTNLENHF 177 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCE-----EEEEEEEECCCcHHHHHHHHHHh
Confidence 87777766665222 1246667885 2 335555566554 23568889999999999999877
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+..-. .....+ +.+||.+|+.+|+.+++.|| .||++++
T Consensus 178 ~~~~~----~~~~~m----------------s~eea~~l~~~al~~~~~rd-~s~~~ie 215 (243)
T 1ryp_A 178 KKSKI----DHINEE----------------SWEKVVEFAITHMIDALGTE-FSKNDLE 215 (243)
T ss_dssp HHHCS----SSCCCS----------------SHHHHHHHHHHHHHHHHTCC-CCTTSEE
T ss_pred hhccc----ccccCC----------------CHHHHHHHHHHHHHHHhccc-CCCCcEE
Confidence 54100 001123 38999999999999999999 6776654
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-17 Score=156.75 Aligned_cols=157 Identities=35% Similarity=0.388 Sum_probs=118.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|+|.++.+++++||++++ ++.++.|| ..+..++.+|+++++.+..+...+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777776666
Q ss_pred eeeEEEe--------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++-.. ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST-----DVGYYLSLGSGSLAAMAVLESHW-----------KQ 144 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHHC-----------CS
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCE-----EecCEEEECCCHHHHHHHHHhhC-----------CC
Confidence 5554221 134555678643 24445555553 34678899999998888888743 23
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+++ .+||.+|+++|+.+++.+|..||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~~~~~d~~sg~~i~v~ 176 (222)
T 1ryp_I 145 DLT----------------KEEAIKLASDAIQAGIWNDLGSGSNVDVC 176 (222)
T ss_dssp SCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CcC----------------HHHHHHHHHHHHHHHHhccccCCCcEEEE
Confidence 443 89999999999999999999999877644
|
| >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-17 Score=158.05 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=118.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+| +.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (233)
T 1iru_B 26 AAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI 104 (233)
T ss_dssp HHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 346789999999999999999999999 7899999999999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...++.|.|... ..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 105 ~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 178 (233)
T 1iru_B 105 PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY-----FAWKATAMGKNYVNGKTFLEKRYN- 178 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCE-----EEeeEEEECCCCHHHHHHHHHHhc-
Confidence 7776666554221 123555678433 34455555554 335788899999999998888443
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+.+|+..++.+| .||++++
T Consensus 179 ----------~~ms----------------~eea~~la~~al~~~~~~d-~sg~~i~ 208 (233)
T 1iru_B 179 ----------EDLE----------------LEDAIHTAILTLKESFEGQ-MTEDNIE 208 (233)
T ss_dssp ----------TTCC----------------HHHHHHHHHHHHHTTCCSC-CCSSSEE
T ss_pred ----------cCCC----------------HHHHHHHHHHHHHHHhhcc-CCCCCEE
Confidence 2333 8999999999999999999 6776654
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-16 Score=151.22 Aligned_cols=156 Identities=23% Similarity=0.217 Sum_probs=116.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|+|.+|.+++++||++++ ++.++.|| ..+..++.+|+.+++.+..+...+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 56666666 223456788888888887777666
Q ss_pred eeeEEEe--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
..++-.. ...++.+.|......++.+.++. + -...+.+.|+|+......|++.++ .+
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~p~G~~--~--~~~~~~~~Gsgs~~a~~~Le~~~~-----------~~ 145 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGM--L--IRQPFTIGGSGSSYIYGYVDAAYK-----------PG 145 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEECGGGC--C--EECSEEEEEGGGGGGHHHHHHHCC-----------SS
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCc--e--ecCCEEEEccCHHHHHHHHHhhcC-----------CC
Confidence 6664221 23566678863221222244432 1 125566779999999999988542 34
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ .|||.+|+.+|+..++.+|..||++++
T Consensus 146 ms----------------~eea~~la~~al~~~~~~d~~sg~~i~ 174 (199)
T 3unf_N 146 MT----------------PEECRRFTTNAITLAMNRDGSSGGVIY 174 (199)
T ss_dssp CC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred CC----------------HHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 43 899999999999999999999997654
|
| >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-17 Score=159.08 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=119.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|+|..+++++++||++++ ++.++.|| ..+..++.+|+..++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 105 (244)
T 1ryp_C 26 ESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDI 105 (244)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 44689999999999999999999999999999899999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.+.| .. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 106 ~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 180 (244)
T 1ryp_C 106 PVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY-----TGWKAISVGANTSAAQTLLQMDYK 180 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccE-----EeeeEEEECCCcHHHHHHHHHhhh
Confidence 7776666554221 124555688 32 234455555554 345788899999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .|||.+|+.+|+.+++.+|..||++++
T Consensus 181 -----------~~ms----------------~eea~~la~~al~~~~~rd~~sg~~i~ 211 (244)
T 1ryp_C 181 -----------DDMK----------------VDDAIELALKTLSKTTDSSALTYDRLE 211 (244)
T ss_dssp -----------TTCC----------------HHHHHHHHHHHHHHHCSSSSCCGGGEE
T ss_pred -----------cCCC----------------HHHHHHHHHHHHHHHhccccCCCCcEE
Confidence 2333 899999999999999999555675543
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-17 Score=162.03 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=122.6
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-----
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK----- 214 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l----- 214 (486)
-+++++|||+|||+++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.
T Consensus 35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 456789999999999999999999999999999999999999986 66666666 223446778887
Q ss_pred cCCCcccccccceeeEEE-e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 215 GYSGPTARKTGTTIVGAI-F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~-~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
+++.+.++...+..++-. + ...+|.+.|.. +..+.+++.++. ...+..+.|+|+......|+
T Consensus 115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le 189 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT-----YSSPTLATGFGAHMANPLLR 189 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE-----ECCSEEECTHHHHTHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCE-----EeCCEEEEccCHHHHHHHHH
Confidence 777777776665555411 1 12355567863 335556666554 34677888899988888887
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.++..-. ...+ +.|||.+|+++|+..++.||..||+++++
T Consensus 190 ~~~~~~~~------~~~m----------------s~eeA~~la~~al~~a~~rd~~sg~~i~v 230 (266)
T 1g0u_M 190 KVVDRESD------IPKT----------------TVQVAEEAIVNAMRVLYYRDARSSRNFSL 230 (266)
T ss_dssp TTCSSGGG------GGGC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred Hhhccccc------CCCC----------------CHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 74422000 0023 48999999999999999999999977653
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-16 Score=152.19 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=118.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777777666
Q ss_pred eeeEEE-e-------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI-F-------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~-~-------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-. + ...++.|.|.. +..+.+.+.++. ...+..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~-----~~~~~~a~Gsgs~~a~~~Le~~~~----------- 144 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM-----VRQSFAIGGSGSSYIYGYVDATYR----------- 144 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC-----EECSEEEESGGGGGGHHHHHHHCC-----------
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcE-----EecCEEEECCCHHHHHHHHHHhcC-----------
Confidence 555422 1 12455567863 234455555554 235678889999999999888542
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..++ .+||.+++.+|+.+++.+|..||+++++
T Consensus 145 ~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 176 (205)
T 1iru_H 145 EGMT----------------KEECLQFTANALALAMERDGSSGGVIRL 176 (205)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhccccCCcEEE
Confidence 2333 8999999999999999999999977653
|
| >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-17 Score=156.93 Aligned_cols=160 Identities=13% Similarity=0.018 Sum_probs=120.0
Q ss_pred cccc-cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 152 ARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 152 ~~~t-GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
++++ |||+||++++||||||+|+|+| |.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 31 av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
T 1iru_A 31 AINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEI 109 (246)
T ss_dssp HHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4567 9999999999999999999999 7999999999999986 66666666 223456778888888887
Q ss_pred cccccceeeEEE---e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~---~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-. + ...+|.|.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 110 ~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~ 184 (246)
T 1iru_A 110 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY-----CGFKATAAGVKQTESTSFLEKKVK 184 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEEETTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE-----EEeeEEEECCCcHHHHHHHHHhhc
Confidence 777777766522 1 12355567852 334555566554 235788899999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
. ...++ .+||.+|+.+|+..++.+| .||++++
T Consensus 185 ~---------~~~ms----------------~eea~~la~~al~~~~~rd-~sg~~i~ 216 (246)
T 1iru_A 185 K---------KFDWT----------------FEQTVETAITCLSTVLSID-FKPSEIE 216 (246)
T ss_dssp S---------CCCCC----------------HHHHHHHHHHHHHHHTTCC-CCTTSEE
T ss_pred c---------cCCCC----------------HHHHHHHHHHHHHHHhccc-CCCCcEE
Confidence 2 11343 8999999999999999999 8886654
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=147.48 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=116.3
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+..++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 56666666 222445778888888777776655
Q ss_pred eeeEEEe---c------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAIF---A------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~~---k------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-.. . ..++.|.|... ..+.+++.++. +..+..+.|+|+......|++.+ .
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~-----------~ 144 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR-----ISGATFSVGSGSVYAYGVMDRGY-----------S 144 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE-----EECSEEEESTTHHHHHHHHHTTC-----------C
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcE-----EEeCCEEEEcCHHHHHHHHhccC-----------C
Confidence 5554211 1 24555678533 34556666655 33577888999998888888743 2
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+++|+..++.||..+|++++
T Consensus 145 ~~~s----------------~eea~~l~~~al~~~~~rd~~s~~~i~ 175 (204)
T 1iru_L 145 YDLE----------------VEQAYDLARRAIYQATYRDAYSGGAVN 175 (204)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhCccCCCceE
Confidence 3343 899999999999999999998987654
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=151.21 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=116.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66667666 223456778888888777777666
Q ss_pred eeeEEEe---------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGAIF---------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI~~---------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++-.. ...++.+.|... ..+.+++.++..+ .+ ..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~-----~~~~~aiG~g~~~a~~~Le~~~~---------- 145 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIE-----EKDIVATGSGSLTAYGVLEDRFT---------- 145 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEE-----ESSEEEESTTHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeee-----cCCEEEEcCCHHHHHHHHHhhcC----------
Confidence 6665221 123555678532 3444555555422 34 88899999999988888542
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+++.+|+..++.+|..||++++
T Consensus 146 -~~~s----------------~eea~~la~~al~~~~~~d~~s~~~i~ 176 (202)
T 1j2q_H 146 -PEIG----------------VDEAVELAVRAIYSAMKRDSASGDGID 176 (202)
T ss_dssp -TTCC----------------HHHHHHHHHHHHHHHHTTCTTSCSCEE
T ss_pred -CCcC----------------HHHHHHHHHHHHHHHHhcCCCCCCcEE
Confidence 2333 899999999999999999999987654
|
| >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=154.28 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=116.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|..+ +++++||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (241)
T 1iru_E 29 EAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETM 107 (241)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44679999999999999999999999999998 89999999986 66666666 223446778887777776
Q ss_pred cccccceeeEEE---e---------------cCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F---------------ADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 221 aV~~GtTiIgI~---~---------------kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
++...+..++-. + ...+|.+.|.. +..+.+++.++. +..+..+.|+|+......|+
T Consensus 108 ~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le 182 (241)
T 1iru_E 108 TVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF-----VQCDARAIGSASEGAQSSLQ 182 (241)
T ss_dssp CHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE-----EecceEEECCCcHHHHHHHH
Confidence 666655544311 1 12355567843 234455555554 23477888999999999888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+.++ ..++ .|||.+|+.+|+.+++.+ ..||++++
T Consensus 183 ~~~~-----------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i~ 216 (241)
T 1iru_E 183 ELYH-----------KSMT----------------LKEAIKSSLIILKQVMEE-KLNATNIE 216 (241)
T ss_dssp HHCC-----------TTCC----------------HHHHHHHHHHHHHHHCSS-CCCTTSEE
T ss_pred HHhc-----------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCCEE
Confidence 8542 3333 899999999999999988 56776554
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-16 Score=151.60 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=117.5
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66677766 223446778888888777777666
Q ss_pred eeeEEE--------e-cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGAI--------F-ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI~--------~-kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++-. + ...++.+.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~---------- 145 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-----LKGDIFCVGSGQTFAYGVLDSNYK---------- 145 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE-----EECSEEEESTTHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCcee-----EecCCEEEcCCHHHHHHHHHhhCC----------
Confidence 665422 1 22455567832 335556666655 235678899999998888887442
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..+ +.+||.+|+++|+..++.||..+|++++
T Consensus 146 -~~~----------------s~eea~~la~~al~~~~~rd~~s~~~i~ 176 (212)
T 1ryp_L 146 -WDL----------------SVEDALYLGKRSILAAAHRDAYSGGSVN 176 (212)
T ss_dssp -TTC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred -CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceE
Confidence 233 3899999999999999999999987654
|
| >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-16 Score=153.83 Aligned_cols=159 Identities=18% Similarity=0.109 Sum_probs=115.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|.++ +++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 21 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 99 (242)
T 1ryp_E 21 EAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDI 99 (242)
T ss_dssp HHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34689999999999999999999999999988 89999999986 66666666 223445778888877777
Q ss_pred cccccceeeEEE-------------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279 (486)
Q Consensus 221 aV~~GtTiIgI~-------------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~v 279 (486)
++...+..++-. +...++.|.|. . +..+.+++.++. +..+..+.|+|+......
T Consensus 100 ~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~ 174 (242)
T 1ryp_E 100 NVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF-----YRYNAKAIGSGSEGAQAE 174 (242)
T ss_dssp CHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCE-----eccCEEEECCCCHHHHHH
Confidence 776666655421 11235556783 2 234455555554 234678889999999998
Q ss_pred HHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 280 TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 280 L~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
|++.++ ..++ .+||.+|+.+|+..++.+ ..||++++
T Consensus 175 Le~~~~-----------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i~ 210 (242)
T 1ryp_E 175 LLNEWH-----------SSLT----------------LKEAELLVLKILKQVMEE-KLDENNAQ 210 (242)
T ss_dssp HHHHCC-----------TTCC----------------HHHHHHHHHHHHHHHCSS-CCCTTSEE
T ss_pred HHHhhc-----------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCcEE
Confidence 888442 3333 899999999999999988 55675543
|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=140.68 Aligned_cols=153 Identities=11% Similarity=0.058 Sum_probs=104.0
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCce-eeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTI-VAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~-Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
.+|||+|||+++||||||+|+|+|.|.+ |.+++++||+++ + ++.++.|| +.+ ..++.+|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~-g----~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN-G----NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT-T----CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc-C----Ch
Confidence 6899999999999999999999999999 999999999999 4 66666666 222 33455554 1 00
Q ss_pred cccccee---e----EE-EecCeEEEEEeCCCCcCeeeecCCcceEEEec--CeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 222 RKTGTTI---V----GA-IFADGVVLGADTRATDDTIVAEKNCQKIHYMA--KNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 222 V~~GtTi---I----gI-~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~--~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
+.....+ + +. .+.-.+++| | .+..+.+++.++. +. .+..+.|||+..+...|++.++...
T Consensus 78 ~~~~~~l~~~~~~~~~~rp~~~~~lva-d-~p~ly~~d~~G~~-----~~~~~~~~a~Gsgs~~a~~~le~~~~~~~--- 147 (180)
T 2z3b_A 78 KRAAVELAKEWRSDKVLRKLEAMLIVM-N-QDTLLLVSGTGEV-----IEPDDGILAIGSGGNYALAAGRALKKHAG--- 147 (180)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCCEEEE-C-SSCEEEECTTCCE-----ECCSSSEEEESTTHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHhhhCcCcceEEEEEE-c-CCeEEEECCCCcE-----EEeCCCEEEECCCHHHHHHHHHHhhhccC---
Confidence 0000000 0 00 122345555 5 3445555555543 33 4788999999999999999776410
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ +.|| ++++|+..++.||.+||++++++
T Consensus 148 -----~~m----------------t~ee---l~~~al~~a~~rd~~sg~~i~v~ 177 (180)
T 2z3b_A 148 -----ESM----------------SASE---IARAALETAGEICVYTNDQIILE 177 (180)
T ss_dssp -----GGC----------------CHHH---HHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -----CCC----------------CHHH---HHHHHHHHHHHhcCccCCeEEEE
Confidence 012 2444 67899999999999999998754
|
| >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-16 Score=154.87 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=111.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHh-HhccCCCc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFL-ASKGYSGP 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L-~~le~~~~ 219 (486)
+++++|||+||++++||||||+|+|+| |.++.+++++||++++ ++.++.|| +.+ ..++.. |+..++.+
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (250)
T 1ryp_B 26 TAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEY 104 (250)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346799999999999999999999998 8999999999999986 66666666 223 334555 65555555
Q ss_pred ccccccceeeEE-------------EecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGA-------------IFADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 220 ~aV~~GtTiIgI-------------~~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
..+...+..++- -....+|.+.|.. +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 105 ~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~ 179 (250)
T 1ryp_B 105 PPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY-----FPWKATAIGKGSVAAKTFLEKRW 179 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCE-----EeeceeEecCccHHHHHHHHHHh
Confidence 543332111110 0112455567863 345556666654 33578889999999999888854
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+ ..++ .|||.+|+.+|+.+++.+|. ||++++
T Consensus 180 ~-----------~~ms----------------~eea~~la~~al~~~~~~~~-sg~~i~ 210 (250)
T 1ryp_B 180 N-----------DELE----------------LEDAIHIALLTLKESVEGEF-NGDTIE 210 (250)
T ss_dssp C-----------TTCC----------------HHHHHHHHHHHHHHHCCSCC-STTTEE
T ss_pred c-----------cCCC----------------HHHHHHHHHHHHHHHhcccc-CCCCEE
Confidence 2 3333 89999999999999998865 776654
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-16 Score=149.59 Aligned_cols=156 Identities=11% Similarity=0.021 Sum_probs=116.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.++...+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 56666666 223456778888888777666555
Q ss_pred eeeEE------E-----ecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGA------I-----FADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI------~-----~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..+.- . ....++.+.|.. +..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~-------- 148 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL-----AKAPFAAHGYGAFLTLSILDRYYT-------- 148 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE-----EECSEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCe-----EECCEEEECCcHHHHHHHHHhccc--------
Confidence 44421 0 112455568863 334555566554 346788899999888888887442
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..+ +.+||.+|+++|+..++.||..||+++++
T Consensus 149 ---~~~----------------s~eea~~l~~~al~~a~~rd~~sg~~i~v 180 (201)
T 1iru_K 149 ---PTI----------------SRERAVELLRKCLEELQKRFILNLPTFSV 180 (201)
T ss_dssp ---TTC----------------CHHHHHHHHHHHHHHHHHTBCBCCCCEEE
T ss_pred ---CCC----------------CHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 233 38999999999999999999999976553
|
| >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-16 Score=154.69 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=118.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|.++.+++ +||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 25 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 103 (244)
T 1ryp_G 25 KAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 103 (244)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTS-CCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHCCCCEEEEEECCEEEEEEecccCCCCcccccc-CceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456899999999999999999999999999998765 9999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.+.|... ..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 104 ~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 177 (244)
T 1ryp_G 104 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY-----WGYKGAATGKGRQSAKAELEKLVD- 177 (244)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCE-----EEeeEEEECCChHHHHHHHHHhHh-
Confidence 7776666554211 123555678532 34445555554 234788899999888888887431
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
++...++ .+||.+++.+|+..++.+|..+|.++
T Consensus 178 -------~~~~~ms----------------~eea~~la~~al~~~~~~d~~s~~~i 210 (244)
T 1ryp_G 178 -------HHPEGLS----------------AREAVKQAAKIIYLAHEDNKEKDFEL 210 (244)
T ss_dssp -------HCTTCCC----------------HHHHHHHHHHHHHHHGGGGTTSCEEE
T ss_pred -------hcCCCCC----------------HHHHHHHHHHHHHHHHhccCCCCCeE
Confidence 1223343 89999999999999999998887443
|
| >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-16 Score=149.57 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=116.5
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||||+|+|+|.. ++++||++++ ++.++.|| ..+..++..|+..++.+.+
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999999953 5889999986 66666666 2234567788888888877
Q ss_pred ccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+...+..++-.. ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.++..
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~-----~~~~~aiG~gs~~a~~~Le~~~~~~ 178 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVT-----ELYGTAIGARSQGAKTYLERTLDTF 178 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEE-----EESEEEESTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCee-----eeeEEEECCCcHHHHHHHHHHhccc
Confidence 776666665222 124555688533 345555665542 3468889999999999998877540
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccc-cCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND-LGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD-~gSG~nVd 343 (486)
.++. .+.|||.+++.+|+..++ +| ..||++++
T Consensus 179 ---------~~m~--------------~s~eea~~~a~~al~~~~-~d~~~s~~~i~ 211 (233)
T 1ryp_F 179 ---------IKID--------------GNPDELIKAGVEAISQSL-RDESLTVDNLS 211 (233)
T ss_dssp ---------TTCC--------------SCHHHHHHHHHHHHTTSC-CSSCCCTTTEE
T ss_pred ---------cccC--------------CCHHHHHHHHHHHHHHHh-hcccCCCCcEE
Confidence 0120 038899999999999998 88 57887654
|
| >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-16 Score=153.14 Aligned_cols=158 Identities=17% Similarity=0.087 Sum_probs=115.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|. +.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (246)
T 1j2p_A 29 EAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPI 107 (246)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 356799999999999999999999999975 5589999999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
++...+..++-.. ...+|.+.|..+..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 108 ~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~-- 180 (246)
T 1j2p_A 108 TVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGAL-----LEYKATAIGMGRMAVTEFFEKEYR-- 180 (246)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSSEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccEEEEEEEECCCCEEEEECCCceE-----EeeeEEEECCCcHHHHHHHHHHhc--
Confidence 7776666554221 12355668832334455555554 234678889999999998888542
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
..++ .+||.+|+.+|+.+++.+ ..||+++
T Consensus 181 ---------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i 209 (246)
T 1j2p_A 181 ---------DDLS----------------FDDAMVLGLVAMGLSIES-ELVPENI 209 (246)
T ss_dssp ---------TTCC----------------HHHHHHHHHHHHHHHHTS-CCCGGGE
T ss_pred ---------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCcE
Confidence 2343 899999999999999886 6676554
|
| >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-16 Score=151.70 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=117.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|. .++++||+++| ++.++.|| ..+..++..|+..++.+.
T Consensus 27 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i 103 (263)
T 1iru_F 27 EAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL 103 (263)
T ss_dssp HHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 346789999999999999999999999994 46899999986 66666666 223446778888888887
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 104 ~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~~ 178 (263)
T 1iru_F 104 PVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYF-----DCRAMSIGARSQSARTYLERHMSE 178 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEE-----EESEEEESTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEE-----EeeEEEcCcccHHHHHHHHHHhcc
Confidence 7776666665222 123555678532 344555555542 336888999999999999987754
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccc-cCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND-LGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD-~gSG~nVd 343 (486)
. ..+ +.+||.+|+.+|+..++.+| ..||++++
T Consensus 179 ~---------~~m----------------s~eea~~la~~al~~~~~rd~~~sg~~ie 211 (263)
T 1iru_F 179 F---------MEC----------------NLNELVKHGLRALRETLPAEQDLTTKNVS 211 (263)
T ss_dssp H---------TTC----------------CHHHHHHHHHHHHHTTSCTTCCCCTTTEE
T ss_pred c---------CCC----------------CHHHHHHHHHHHHHHHHhccccCCCCcEE
Confidence 0 122 38999999999999999999 57887654
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-16 Score=148.22 Aligned_cols=156 Identities=12% Similarity=-0.037 Sum_probs=116.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 66666666 223446778888888777776655
Q ss_pred eeeEEEe-----------cCeEEEEEeC---CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 227 TIVGAIF-----------ADGVVLGADT---RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 227 TiIgI~~-----------kdGVVlAaDt---r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
..++-.. ...++.+.|. .+..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~-----~~~~~~aiG~g~~~a~~~Le~~~-------- 148 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK-----VELPYGAHGYSGFYTFSLLDHHY-------- 148 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE-----EECSEEECTTHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCE-----EECCEEEEcccHHHHHHHHHhhc--------
Confidence 5554211 1235556784 2334555566554 33577888999988888888744
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 293 LNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 293 l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+.+|+..++.+|..||+++++
T Consensus 149 ---~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 181 (198)
T 1ryp_K 149 ---RPDMT----------------TEEGLDLLKLCVQELEKRMPMDFKGVIV 181 (198)
T ss_dssp ---CTTCC----------------HHHHHHHHHHHHHHHHHHCSBCCCCEEE
T ss_pred ---CCCCC----------------HHHHHHHHHHHHHHHHHhCccCCCceEE
Confidence 23333 8999999999999999999999977653
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-16 Score=155.29 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=115.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~a 221 (486)
++++|||+|||+++||||||+|+|+|+| ++.+++++||++++ ++.++.|| + .+..++.+|++.++.+.+
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 4579999999999999999999999997 78889999999986 66666666 2 224467788888888887
Q ss_pred ccccceeeEEE---e----------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI---F----------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~---~----------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+...+..++-. + ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.+
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~--- 184 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALI-----EYKATAIGSGRPVVMELLEKEY--- 184 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCE-----EESEEEESTTHHHHTTTHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEE-----ecCeEEECCCHHHHHHHHHHhc---
Confidence 77666665422 1 124566688643 345555666542 2467889999988888888844
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...++ .+||.+|+.+|+..++.+ .||++++
T Consensus 185 --------~~~ms----------------~eea~~la~~al~~a~~~--~sg~~ie 214 (264)
T 3h4p_A 185 --------RDDIT----------------LDEGLELAITALTKANED--IKPENVD 214 (264)
T ss_dssp --------CTTCC----------------SHHHHHHHHHHHHHHSSS--CCTTSEE
T ss_pred --------cCCCC----------------HHHHHHHHHHHHHHHHhc--cCCCeEE
Confidence 23343 789999999999999865 5775543
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-16 Score=149.54 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=113.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+|||+++||||||||+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+..++.+.++...+
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 56666666 223446777887777776665555
Q ss_pred eeeEEEe------------cCeEEEEEeCC-C------CcCeeeecCCcceEEEecC--eEEEEecCchHHHHHHHHHHH
Q psy10990 227 TIVGAIF------------ADGVVLGADTR-A------TDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 227 TiIgI~~------------kdGVVlAaDtr-~------t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~vL~~~lr 285 (486)
..++-.. ...+|.|.|.. . ..+.+++.++. +.. +..+.|+|+......|++.+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~-----~~~~~~~~aiGsgs~~a~~~Le~~~- 154 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR-----YEERAGYHAVGSGSLFAKSALKKIY- 154 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE-----EECCSSEEEESTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCce-----EEeCCCeEEECCCHHHHHHHHHhhc-
Confidence 5443111 11355568864 2 34445555543 334 78889999999999888843
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
...++ .+||.+|+.+|+.+++.+|..||+
T Consensus 155 ----------~~~ms----------------~eeA~~la~~al~~a~~~d~~sg~ 183 (235)
T 1q5q_H 155 ----------SPDSD----------------EETALRAAIESLYDAADDDSATGG 183 (235)
T ss_dssp ----------CTTCC----------------HHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred ----------CCCCC----------------HHHHHHHHHHHHHHHHhhCcccCC
Confidence 23343 899999999999999999999985
|
| >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-16 Score=154.16 Aligned_cols=157 Identities=15% Similarity=-0.013 Sum_probs=114.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|+|.++. ++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 28 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 106 (254)
T 1iru_G 28 KAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 106 (254)
T ss_dssp HHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999999999996 8999999986 66666666 223456778888888877
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.|.| .. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 107 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 181 (254)
T 1iru_G 107 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS-----YGYWGCAIGKARQAAKTEIEKLQM 181 (254)
T ss_dssp CHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCE-----EeeeeEEecCccHHHHHHHHHhcc
Confidence 7776666664221 123555678 32 234445555554 234788899999888888877332
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
..+ +.+||.+|+.+|+..++.+|..+|.
T Consensus 182 -----------~~m----------------s~eea~~la~~al~~~~~~~~~~~~ 209 (254)
T 1iru_G 182 -----------KEM----------------TCRDIVKEVAKIIYIVHDEVKDKAF 209 (254)
T ss_dssp -----------GGC----------------CHHHHHHHHHHHHHHHSCSSSSCCE
T ss_pred -----------CCC----------------CHHHHHHHHHHHHHHHHhhccCCCC
Confidence 122 4899999999999999877665653
|
| >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-15 Score=146.97 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=115.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 23 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 102 (241)
T 1ryp_D 23 EAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPV 102 (241)
T ss_dssp HHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34679999999999999999999999999999999999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEE------------e-cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI------------F-ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~GtTiIgI~------------~-kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
++...+..++-. + ...+|.|.|. . +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 103 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~ 177 (241)
T 1ryp_D 103 TVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-----SSWSAQTIGRNSKTVREFLEKNY 177 (241)
T ss_dssp CHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE-----EEeeeEEECCCcHHHHHHHHHhh
Confidence 777666655311 1 1235556785 2 335556666654 23467889999988888887733
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
+. ....++ .+||.+|+.+|+..++. .||+++
T Consensus 178 ~~--------~~~~ms----------------~eea~~l~~~al~~~~~---~sg~~i 208 (241)
T 1ryp_D 178 DR--------KEPPAT----------------VEECVKLTVRSLLEVVQ---TGAKNI 208 (241)
T ss_dssp CT--------TSCCCS----------------HHHHHHHHHHHHHHHHC---SCSTTE
T ss_pred hc--------ccCCCC----------------HHHHHHHHHHHHHHHhc---CCCCcE
Confidence 00 023443 89999999999998873 666554
|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=137.83 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=102.3
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
||+||++++||||||+|+|+|.|.+|.+++++||+++ + ++.++.|| +.+ ..++..|+.+. +...
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~-----~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNL-----TKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCH-----HHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhcccH-----HHHH
Confidence 8999999999999999999999999999999999999 4 66666666 222 33444444221 1111
Q ss_pred ceeeEE-------E-ecCeEEEEEeCCCCcCeeeecCCcceEEEec--CeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 226 TTIVGA-------I-FADGVVLGADTRATDDTIVAEKNCQKIHYMA--KNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 226 tTiIgI-------~-~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~--~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..+... . +.-.+++| | .+..+.+++.++. +. ++..+.|||+......|++.++.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~lv~-D-~p~Ly~~d~~G~~-----~~~~~~~~a~Gsgs~~a~~~le~~~~~--------- 139 (171)
T 1m4y_A 76 VELAKDWRTDRVLRRLEALLLVA-D-KENIFIISGNGEV-----IQPDDDAAAIGSGGPYALAAAKALLRN--------- 139 (171)
T ss_dssp HHHHHHHHHCTTGGGCCCEEEEE-C-SSCEEEECTTSCE-----ECCSSSEEEESTTHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhCCCCceEEEEEEE-c-CCEEEEECCCCCE-----EecCCCEEEECCcHHHHHHHHHHhccc---------
Confidence 111100 0 11234445 7 4556666666654 33 34889999999999999986641
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+++ . .+|+++|+..++.||.+||++++++
T Consensus 140 -~~ms----------------~---~~l~~~al~~a~~rd~~sg~~i~v~ 169 (171)
T 1m4y_A 140 -TDLS----------------A---REIVEKAMTIAGEICIYTNQNIVIE 169 (171)
T ss_dssp -CCCC----------------H---HHHHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -CCCC----------------H---HHHHHHHHHHHHHhCcccCCeEEEE
Confidence 1222 2 4688999999999999999988764
|
| >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-16 Score=150.15 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=114.1
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.| ++.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 24 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 102 (248)
T 1iru_D 24 EAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPV 102 (248)
T ss_dssp HHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999998 67889999999986 66666666 223456778888888877
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.|.| .. +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 103 ~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~- 176 (248)
T 1iru_D 103 TVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY-----HAWKANAIGRGAKSVREFLEKNY- 176 (248)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHTTTC-
T ss_pred CHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcE-----EEeeEEEECCCcHHHHHHHHHhh-
Confidence 7776666654221 123555678 32 234455555554 34578889999988888887733
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...+. .+.+||.+|+.+|+..++. .||++++
T Consensus 177 ----------~~~m~--------------~s~eea~~la~~al~~~~~---~sg~~i~ 207 (248)
T 1iru_D 177 ----------TDEAI--------------ETDDLTIKLVIKALLEVVQ---SGGKNIE 207 (248)
T ss_dssp ----------CSSTT--------------CSHHHHHHHHHHHHHTTSC---TTSTTCC
T ss_pred ----------ccccc--------------CCHHHHHHHHHHHHHHHHc---CCCCcEE
Confidence 23330 0389999999999998874 4665554
|
| >3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-15 Score=151.58 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=117.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|.++.+ +.+||++++ ++.++.|| + .+..++.+|+..++.+.
T Consensus 29 kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i 107 (288)
T 3nzj_F 29 KAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 107 (288)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3467999999999999999999999999999986 669999986 66666666 2 23446778888888888
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.+.|... ..+.+.+.++. +..+..+.|+|+......|++.++.
T Consensus 108 ~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~-----~~~~~~aiGsgs~~a~~~Lek~~~~ 182 (288)
T 3nzj_F 108 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY-----WGYKGAATGKGRQSAKAELEKLVDH 182 (288)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCE-----EEcCEEEEcCcHHHHHHHHHHhccc
Confidence 8777777665321 123566788643 24445555554 2357888999999999998885421
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
+...++ .+||.+|+.+|+..++.+|..+|
T Consensus 183 --------~~~~ms----------------~eEAv~la~~al~~a~~~~~~~~ 211 (288)
T 3nzj_F 183 --------HPEGLS----------------AREAVKQAAKIIYLAHEDNKEKD 211 (288)
T ss_dssp --------CTTCCC----------------HHHHHHHHHHHHHHHGGGGTTSE
T ss_pred --------cCCCCC----------------HHHHHHHHHHHHHHHHhcccCCC
Confidence 333444 89999999999999988776554
|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=134.65 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=102.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
||+|||+++||||||+|+|+|.|.+|.+++++||+++ | ++.++.|| +.+ ..++.+|+....+ .+..-
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~--~~~~l 78 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLK--SAVEL 78 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHH--HHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcCcHHH--HHHHH
Confidence 7999999999999999999999999999999999999 4 66666666 222 3344444431100 00000
Q ss_pred ceee----EEEecCeEEEEEeCCCCcCeeeecCCcceEEEec-CeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 226 TTIV----GAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA-KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 226 tTiI----gI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~-~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
+..+ +...-..+++++| .+..+.+++.++.. ... ++..+.|||+......|++.++. .+++
T Consensus 79 ~~~~~~~~~~r~~~~~l~g~d-~p~Ly~~d~~G~~~---~~~~~~~~a~Gsgs~~a~~~le~~~~~----------~~mt 144 (174)
T 1g3k_A 79 AKDWRTDRALRKLEAMLIVAD-EKESLIITGIGDVV---QPEEDQILAIGSGGNYALSAARALVEN----------TELS 144 (174)
T ss_dssp HHHHHHSTTGGGCCCEEEEEC-SSCEEEEETTTEEE---CCCTTCEEEESTTHHHHHHHHHHHHHH----------CCCC
T ss_pred HHHHHhccCcCcceEEEEEEC-CCEEEEEcCCCcEE---ecCCCcEEEEcccHHHHHHHHHHhccc----------CCCC
Confidence 0000 0000124555667 45556666665542 122 45889999999999999986641 1222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+.+|+++|+..++.||.+||+++++.
T Consensus 145 -------------------~~~l~~~al~~a~~rd~~sg~~i~v~ 170 (174)
T 1g3k_A 145 -------------------AHEIVEKSLRIAGDICVFTNTNFTIE 170 (174)
T ss_dssp -------------------HHHHHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -------------------HHHHHHHHHHHHHHhccccCCceEEE
Confidence 22688999999999999999887653
|
| >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-14 Score=140.18 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=106.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHhHhccCC-Cc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFLASKGYS-GP 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L~~le~~-~~ 219 (486)
+++++|||+|||+++||||||||+| +++++||++++ ++.++.|| +.+. .+..+|...++ .+
T Consensus 22 ~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 93 (259)
T 1q5q_A 22 KGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRD 93 (259)
T ss_dssp HHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3468999999999999999999999 58999999986 66677766 3332 34556655665 36
Q ss_pred ccccccceeeEEE----e--------cCeEEEEEe----CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI----F--------ADGVVLGAD----TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 220 ~aV~~GtTiIgI~----~--------kdGVVlAaD----tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
..+...+..++-. | ...+|.++| .. +..+.+++.++..+ ..+..+.|+|+......|++
T Consensus 94 i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~----~~~~~aiG~gs~~a~~~Le~ 169 (259)
T 1q5q_A 94 VTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVD----EQHFVVMGGTTEPIATAMRE 169 (259)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEE----ESSEEEESSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceee----CCCEEEECCChHHHHHHHHh
Confidence 6666665555541 2 123555677 33 33555666665420 35688899999998888888
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc-----ccccCCCCCCc
Q psy10990 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV-----FNDLGSGSNID 343 (486)
Q Consensus 283 ~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi-----~nD~gSG~nVd 343 (486)
.+ ...++ .+||.+|+.+|+..++ .||. ||++++
T Consensus 170 ~~-----------~~~ms----------------~eea~~la~~al~~~~~~~~~~rd~-sg~~ie 207 (259)
T 1q5q_A 170 SY-----------RADLD----------------LEAAVGIAVNALRQGGAGEGEKRNV-DVASLE 207 (259)
T ss_dssp HC-----------CTTCC----------------HHHHHHHHHHHHTTCC--------C-CSSCSE
T ss_pred hc-----------cCCCC----------------HHHHHHHHHHHHHHHhhcccccccC-CCCcEE
Confidence 44 23343 8999999999999999 8998 887654
|
| >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-14 Score=136.42 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=102.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHhHhccCC-C
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFLASKGYS-G 218 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L~~le~~-~ 218 (486)
.+++++|||+||++++||||||||+| +++++||+++| ++.++.|| +.+. .++.+|++.++ .
T Consensus 21 ~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~ 92 (248)
T 3mi0_A 21 RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRR 92 (248)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44578999999999999999999999 57999999986 67777766 3333 33566688888 6
Q ss_pred cccccccceeeE-EE---e--------cCeEEEEEeC----C-CCcCeeeecCCcceEEEec-CeEEEEecCchHHHHHH
Q psy10990 219 PTARKTGTTIVG-AI---F--------ADGVVLGADT----R-ATDDTIVAEKNCQKIHYMA-KNIYCCGAGTAADTQVT 280 (486)
Q Consensus 219 ~~aV~~GtTiIg-I~---~--------kdGVVlAaDt----r-~t~g~li~~~s~~KI~~I~-~~i~~~gSGs~aD~~vL 280 (486)
+.++..-+..++ .. + ...+|.++|. . +..+.+++.++. .. .+..+.|+|+......|
T Consensus 93 ~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~-----~~e~~~~a~Gsgs~~a~~~L 167 (248)
T 3mi0_A 93 DVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI-----ADEPHFVVMGGTTEPIANAL 167 (248)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE-----EEESSEEEESSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE-----eecccEEEECccHHHHHHHH
Confidence 666665555554 21 1 1245666886 2 334555565554 33 67888999999999998
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV 332 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi 332 (486)
++.++ ..++ .+||.+|+.+|+..++
T Consensus 168 e~~y~-----------~~mt----------------~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 168 KESYA-----------ENAS----------------LTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHCC-----------TTCC----------------HHHHHHHHHHHHHHC-
T ss_pred HhhcC-----------CCCC----------------HHHHHHHHHHHHHHHH
Confidence 88443 3343 8999999999999987
|
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 | Back alignment and structure |
|---|
Probab=97.57 E-value=9.3e-06 Score=80.06 Aligned_cols=109 Identities=31% Similarity=0.330 Sum_probs=77.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-e-------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-F-------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~-------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~a 275 (486)
+..++.+|++.++.+..+...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+..
T Consensus 88 lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~-----~~~~~~aiGsgs~~ 162 (261)
T 3nzj_H 88 IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST-----DVGYYLSLGSGSLA 162 (261)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEESTTHHH
T ss_pred HHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccE-----EecCeEEeccchHH
Confidence 4567888888888777666555544421 1 123566688643 24455555554 34678899999999
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 276 D~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
....|++.+ ..+++ .|||.+|+.+|+.+++.||.+||++++++
T Consensus 163 a~~~Le~~~-----------~~~ms----------------~eEA~~la~~al~~a~~rD~~sg~~iev~ 205 (261)
T 3nzj_H 163 AMAVLESHW-----------KQDLT----------------KEEAIKLASDAIQAGIWNDLGSGSNVDVC 205 (261)
T ss_dssp HHHHHHHHC-----------CSSCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred HHHHHHHHh-----------ccCCC----------------HHHHHHHHHHHHHHHHhhCCCCCCcEEEE
Confidence 999988844 23443 89999999999999999999999887644
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=72.98 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=77.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-e--------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCc
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-F--------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~--------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs 273 (486)
+..++.+|+++++.+.++...+..++-. + ...+|.|.|.. +..+.+++.++. +..+..+.|+|+
T Consensus 134 lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~-----~~~~~~AiGsgs 208 (287)
T 3nzj_K 134 LGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-----LKGDIFCVGSGQ 208 (287)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCE-----EECSEEEESTTH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceE-----EEcCeEEEecch
Confidence 4567888888888877777666666522 1 12356668842 235556666554 356888899999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 274 ~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
......|++.+ ...++ .+||.+|+++|+.+++.||..||+++++
T Consensus 209 ~~a~~~Le~~y-----------~~dms----------------~eEAi~la~~aL~~a~~rD~~sg~~i~V 252 (287)
T 3nzj_K 209 TFAYGVLDSNY-----------KWDLS----------------VEDALYLGKRSILAAAHRDAYSGGSVNL 252 (287)
T ss_dssp HHHHHHHHTSC-----------CTTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred HHHHHHHHHhh-----------cCCCC----------------HHHHHHHHHHHHHHHHhhCcCCCCceEE
Confidence 99999888743 23343 8999999999999999999999976553
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0014 Score=65.56 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=61.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-ec-----------CeEEEEEeCCC-------CcCeeeecCCcceEEEecCe
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-FA-----------DGVVLGADTRA-------TDDTIVAEKNCQKIHYMAKN 265 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~k-----------dGVVlAaDtr~-------t~g~li~~~s~~KI~~I~~~ 265 (486)
+..++..|+..++.+..+...+..++-. +. ..+|.|.|... ..+.+++.++. +.-..+
T Consensus 116 lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~---~e~~~~ 192 (291)
T 2jay_A 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGW---NIEEEG 192 (291)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCE---EECSSS
T ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcE---EecCCC
Confidence 3456777877777666655444433311 11 12555678642 34444444433 101456
Q ss_pred EEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 266 i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
..+.|+|+......|++.++. .+ +.+||.+|+++|+.+++.+|..||+
T Consensus 193 ~~aiGsgs~~a~~~Le~~~~~-----------~m----------------s~eEAi~la~~aL~~a~~~D~~sg~ 240 (291)
T 2jay_A 193 YQAVGSGSLFAKSSMKKLYSQ-----------VT----------------DGDSGLRVAVEALYDAADDDSATGG 240 (291)
T ss_dssp EEEESTTHHHHHHHHHHHGGG-----------CC----------------SHHHHHHHHHHHHHHC---------
T ss_pred EEEEecCHHHHHHHHHHhcCC-----------CC----------------CHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 788999999999999885532 23 3899999999999999999999884
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=61.96 Aligned_cols=39 Identities=33% Similarity=0.551 Sum_probs=32.3
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCc
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 256 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~ 256 (486)
..+++++|+|+||++++||||+|+|++.+.+.++...+.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~ 96 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDV 96 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCC
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCc
Confidence 567899999999999999999999999988766665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 486 | ||||
| d1rypi_ | 222 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 3e-60 | |
| d1rypi_ | 222 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 1e-09 | |
| d1irui_ | 220 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 5e-59 | |
| d1irui_ | 220 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 4e-12 | |
| d1iruh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 4e-45 | |
| d1iruh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 9e-10 | |
| d1rypl_ | 212 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 4e-45 | |
| d1rypl_ | 212 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 7e-10 | |
| d1ryph_ | 205 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 5e-43 | |
| d1ryph_ | 205 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 6e-13 | |
| d1irul_ | 201 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 6e-43 | |
| d1irul_ | 201 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 2e-08 | |
| d1irue_ | 234 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 3e-42 | |
| d1irue_ | 234 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 2e-07 | |
| d1rypk_ | 198 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 2e-41 | |
| d1rypk_ | 198 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 8e-08 | |
| d1j2qh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 3e-39 | |
| d1j2qh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 2e-08 | |
| d1iru2_ | 217 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 5e-39 | |
| d1iru2_ | 217 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 1e-09 | |
| d1ryp2_ | 233 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 1e-38 | |
| d1ryp2_ | 233 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 1e-09 | |
| d1rypb_ | 250 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 5e-38 | |
| d1rypb_ | 250 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 3e-08 | |
| d1q5qh_ | 224 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 9e-38 | |
| d1q5qh_ | 224 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 2e-07 | |
| d1rypg_ | 244 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 2e-36 | |
| d1rypg_ | 244 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 3e-08 | |
| d1yara1 | 221 | d.153.1.4 (A:13-233) Proteasome alpha subunit (non | 2e-36 | |
| d1yara1 | 221 | d.153.1.4 (A:13-233) Proteasome alpha subunit (non | 9e-07 | |
| d1rypc_ | 244 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 2e-36 | |
| d1rypc_ | 244 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 2e-09 | |
| d1irud_ | 243 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 2e-36 | |
| d1irud_ | 243 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 8e-09 | |
| d1rype_ | 242 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 3e-36 | |
| d1rype_ | 242 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 2e-07 | |
| d1yarh1 | 203 | d.153.1.4 (H:1-203) Proteasome beta subunit (catal | 5e-36 | |
| d1yarh1 | 203 | d.153.1.4 (H:1-203) Proteasome beta subunit (catal | 2e-07 | |
| d1irug_ | 245 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 2e-35 | |
| d1irug_ | 245 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 8e-06 | |
| d1j2pa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 5e-35 | |
| d1j2pa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 1e-06 | |
| d1iruc_ | 250 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 3e-34 | |
| d1iruc_ | 250 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 2e-09 | |
| d1iruj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 3e-34 | |
| d1iruj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 1e-08 | |
| d1ryp1_ | 222 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 8e-34 | |
| d1ryp1_ | 222 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 2e-09 | |
| d1iruk_ | 199 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 9e-34 | |
| d1iruk_ | 199 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 3e-06 | |
| d1rypa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 3e-33 | |
| d1rypa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 6e-06 | |
| d1iru1_ | 213 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 1e-32 | |
| d1iru1_ | 213 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 3e-08 | |
| d1iruf_ | 238 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 2e-32 | |
| d1iruf_ | 238 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 2e-06 | |
| d1rypd_ | 241 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 3e-32 | |
| d1rypd_ | 241 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 1e-05 | |
| d1rypj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 1e-31 | |
| d1rypj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 9e-09 | |
| d1irua_ | 244 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 1e-30 | |
| d1irua_ | 244 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 5e-06 | |
| d1irub_ | 233 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 1e-30 | |
| d1irub_ | 233 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 1e-08 | |
| d1rypf_ | 233 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 3e-30 | |
| d1rypf_ | 233 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 1e-06 | |
| d1q5qa_ | 227 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 1e-27 | |
| d1q5qa_ | 227 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 8e-06 | |
| d1m4ya_ | 171 | d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma | 1e-23 | |
| d1m4ya_ | 171 | d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma | 1e-05 | |
| d2z3ba1 | 180 | d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus | 7e-23 | |
| d2z3ba1 | 180 | d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus | 5e-06 | |
| d1g3ka_ | 173 | d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i | 8e-22 | |
| d1g3ka_ | 173 | d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i | 4e-06 |
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 194 bits (495), Expect = 3e-60
Identities = 117/250 (46%), Positives = 160/250 (64%), Gaps = 30/250 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG F +GVV+ ADTR+T IVA+KNC K+H ++ I+C GAGTAADT+ T LI
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S +EL L T + PRV++A ++L+Q LF+Y
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKY-----------------------------Q 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSGSLAAM+V ES+WK ++T+EE
Sbjct: 92 GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVKGKKDGDYRFKRGTTA 464
KL DAI AG++NDLGSGSN+D+CV++ EYLR Y NV+ +K Y+F RGTTA
Sbjct: 152 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211
Query: 465 LLSTQRIPIV 474
+L + I
Sbjct: 212 VLKESIVNIC 221
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (135), Expect = 1e-09
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVSSIGFQKNAFLASKG 215
TTIVG F +GVV+ ADTR+T IVA+KNC L S I + A G
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
+ + + A ++ + + ++ + G
Sbjct: 61 SNIELHSLYTSREPRVVSA-------------LQMLKQHLFKYQGHIGAYLIVAGVDPTG 107
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND 335
+ S L+ G + L +EE KL DAI AG++ND
Sbjct: 108 SHLFSIHAHGSTDVGYYLSLGS-GSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWND 166
Query: 336 LGSGSNIDLC 345
LGSGSN+D+C
Sbjct: 167 LGSGSNVDVC 176
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 191 bits (487), Expect = 5e-59
Identities = 142/248 (57%), Positives = 184/248 (74%), Gaps = 29/248 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+++ NIYCCGAGTAADT +TT LI+
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S LEL L+TG++PRV+TANR+L+QMLFRY+
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 92 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LRPY + N KG + G YR ++GTTA+
Sbjct: 152 KNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211
Query: 466 LSTQRIPI 473
L+ + P+
Sbjct: 212 LTEKITPL 219
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (154), Expect = 4e-12
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVSSIGFQKNAFLASKG 215
TTI G ++ DG+VLGADTRAT+ +VA+KNC + + S I + +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
+ + + + A + ++ + + Y+ + G
Sbjct: 61 SNLELHSLSTGRLPRVVTA-------------NRMLKQMLFRYRGYIGAALVLGGVDVTG 107
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-FRYQEEECKKLVRDAIAAGVFN 334
+ S +L + G + A + +EEE K LV +AIAAG+FN
Sbjct: 108 PHLYSIYPHGSTDKLPYVTMGS--GSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFN 165
Query: 335 DLGSGSNIDLC 345
DLGSGSNIDLC
Sbjct: 166 DLGSGSNIDLC 176
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 154 bits (391), Expect = 4e-45
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ F GVVLGAD+R T + +A + K+ + I+CC +G+AADTQ D +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
QL + + P V TA L ++M +RY+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A +++ G D G ++++ G F GSGS ++ ++ MT+EE
Sbjct: 92 EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEE 151
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE--YLRPYEIAN 447
C + +A+A + D SG I L I ++GVE L +I
Sbjct: 152 CLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPK 196
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.9 bits (134), Expect = 9e-10
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 28/197 (14%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAFLAS 213
TTI+ F GVVLGAD+R T + +A + + + S+ Q A +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273
+ +V A +++ Y + G
Sbjct: 61 YQLGFHSIELNEPPLVHT--------------------AASLFKEMCYRYREDLMAGIII 100
Query: 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-----FRYQEEECKKLVRDAI 328
A + S + + + + + +EEC + +A+
Sbjct: 101 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160
Query: 329 AAGVFNDLGSGSNIDLC 345
A + D SG I L
Sbjct: 161 ALAMERDGSSGGVIRLA 177
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 154 bits (391), Expect = 4e-45
Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F G+++ D+RAT VA + +++ + + AG AAD Q +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
SQ L +L + V A+++L ++++Y+
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKG---------------------------A 93
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G ++ G G ++ + G+ +GSG A V +SN+K +++ E+
Sbjct: 94 GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 153
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451
L + +I A D SG +++L + ++G Y +++ + K
Sbjct: 154 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK 199
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.7 bits (136), Expect = 7e-10
Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 17/192 (8%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVSSIGFQKNAFLASKG 215
TT + F G+++ D+RAT VA + + + + T++
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAG------------- 47
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
+ T + + + + + ++ G
Sbjct: 48 -GAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTR 106
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ--EEECKKLVRDAIAAGVF 333
T + S LK + + T + +++ E+ L + +I A
Sbjct: 107 KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAH 166
Query: 334 NDLGSGSNIDLC 345
D SG +++L
Sbjct: 167 RDAYSGGSVNLY 178
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (376), Expect = 5e-43
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
G +I+ F DGV+LGAD+R T +A + K+ + I+CC +G+AADTQ D
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ LEL G P TA + +++ + +
Sbjct: 67 IVQYHLELYTSQYGT-PSTETAASVFKELCYENK-------------------------- 99
Query: 343 DLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+++A +++ G DD ++ I GS +P+ GSGS + N++ NM+
Sbjct: 100 ---DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444
+EE ++ +++ + D SG I + V+ GVE L Y
Sbjct: 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFYP 199
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.5 bits (159), Expect = 6e-13
Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 25/198 (12%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLAS 213
G +I+ F DGV+LGAD+R T +A + K +
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVT------------------DKLTRVHD 48
Query: 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273
K + + T + I + L T T A +++ Y K+ G
Sbjct: 49 KIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVFKELCYENKDNLTAGIIV 108
Query: 274 AADTQ------VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDA 327
A T L S +L G I + +EE ++ +
Sbjct: 109 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGY-CDKNFRENMSKEETVDFIKHS 167
Query: 328 IAAGVFNDLGSGSNIDLC 345
++ + D SG I +
Sbjct: 168 LSQAIKWDGSSGGVIRMV 185
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 149 bits (376), Expect = 6e-43
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 28/229 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F GV++ AD+RAT +A + +K+ + + AG AAD L+A
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
Q + +L + V A++LL M+++Y+
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGL------------------------- 95
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
S ++ G D G L+ + G+ + ++GSGS+ A V + + ++ E+
Sbjct: 96 ---SMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQA 152
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDG 454
L R AI + D SG ++L ++++G + +A++ K G
Sbjct: 153 YDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSG 201
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 18/192 (9%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCY-LLSYSDLIAVTVSSIGFQKNAFLASKG 215
TT + F GV++ AD+RAT +A + ++ + + T++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAG------------- 47
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
+ + + + + M ++ G
Sbjct: 48 -GAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK 106
Query: 276 D--TQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVF 333
D +++ + G + R + + E+ L R AI +
Sbjct: 107 RGPGLYYVDSEGNRISGATFSVGSGSVYAY-GVMDRGYSYDLEVEQAYDLARRAIYQATY 165
Query: 334 NDLGSGSNIDLC 345
D SG ++L
Sbjct: 166 RDAYSGGAVNLY 177
|
| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 148 bits (374), Expect = 3e-42
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 22/229 (9%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G ++GV L + R T ++ + +KI + +I C +G AD +
Sbjct: 23 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 81
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
D + + + V + + + + ++ EE+ G
Sbjct: 82 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAM-------SRPFG--- 131
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
AL+ GGVD+ G LF++ P G+ +GS S A S + + +M
Sbjct: 132 ---------VALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSM 182
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANV 448
T +E K + V + + +NI+L ++ E+ V
Sbjct: 183 TLKEAIKSSLIILKQ-VMEEKLNATNIELATVQPGQNFHMFTKEELEEV 230
|
| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.6 bits (118), Expect = 2e-07
Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 9/196 (4%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS-SIGFQKNAF 210
A K G+T +G ++GV L + R T + ++ I +S I K
Sbjct: 23 AIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLI 82
Query: 211 LASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270
++ + T+ V ++ A+ + + G
Sbjct: 83 DKARVETQNHWFTYNETMTVESVTQAV---SNLALQFGEEDADPGAMSRPFGVALL-FGG 138
Query: 271 AGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFR-YQEEECKKLVRDAIA 329
D + ++ G A L+++ + +E K +
Sbjct: 139 VDEKGPQLFHMDPSGTFVQCDARAIGS--ASEGAQSSLQELYHKSMTLKEAIKSSLIILK 196
Query: 330 AGVFNDLGSGSNIDLC 345
V + + +NI+L
Sbjct: 197 Q-VMEEKLNATNIELA 211
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 144 bits (364), Expect = 2e-41
Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 28/222 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
I+G D V+L + T V + + K ++ + AG A DT + I
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ ++L + + +RQ L +
Sbjct: 62 ANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--------------------------R 95
Query: 346 GHVSAALVLGGVDD--TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+++GG D L+ I G+ +P+ G S+ + +++P+MT E
Sbjct: 96 RPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
E L++ + + + ++ K+G+ + ++
Sbjct: 156 EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQA 197
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (119), Expect = 8e-08
Identities = 21/192 (10%), Positives = 47/192 (24%), Gaps = 14/192 (7%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVSSIGFQKNAFLASKG 215
I+G D V+L + T V + + S ++ + F
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
+ + L ++ K+ + N+ G
Sbjct: 62 ANIQLYSIR----------EDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKK 111
Query: 276 DTQV--TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVF 333
+ D + +++E L T + L EE L++ +
Sbjct: 112 NKPELYQIDYLGTKVE-LPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEK 170
Query: 334 NDLGSGSNIDLC 345
+ +
Sbjct: 171 RMPMDFKGVIVK 182
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 139 bits (350), Expect = 3e-39
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 29/224 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT VG + DGVV+ + RAT +A K +KI+ +A + AG+ D Q +I
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ L ++ + P V L +L Y+
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYR----------------------------Y 92
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
L++GG+D G +++I P G + + GSGSL A V E + P + +E
Sbjct: 93 FPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE 152
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448
+L AI + + D SG ID+ I ++ P E+ +
Sbjct: 153 AVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQI 196
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 17/192 (8%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAFLAS 213
TT VG + DGVV+ + RAT +A K Y ++ + S Q A +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273
+ R+ V AI T + + Y+ + + G +
Sbjct: 61 IEANLYEIRRERKPTVRAIA-------------TLTSNLLNSYRYFPYLVQLL-IGGIDS 106
Query: 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVF 333
+ + D I +E + + L + +E +L AI + +
Sbjct: 107 EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMK 166
Query: 334 NDLGSGSNIDLC 345
D SG ID+
Sbjct: 167 RDSASGDGIDVV 178
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 138 bits (349), Expect = 5e-39
Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 29/228 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++G F GVV+ AD + ++ +N +I + + +G AD Q
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
Query: 283 LIASQLELL-KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341
++ + L G + L + ++ + +
Sbjct: 66 VLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSK----------------------- 102
Query: 342 IDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFES--NWKPN 399
+ +V+GG D + L + G + P G G+ A + +P
Sbjct: 103 ---MNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
+++ E + LV + + D S + + + GVE P
Sbjct: 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.9 bits (134), Expect = 1e-09
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 15/196 (7%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAF 210
TGT+++G F GVV+ AD + ++ +N ++ S ++ + FQ
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
Query: 211 LASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270
+ + G + + T K++ + + G
Sbjct: 66 VLGQMVIDEELLGDGHSYSPRAIHSWL-----------TRAMYSRRSKMNPLWNTMVIGG 114
Query: 271 AGTAADTQVTTDLIASQLELLKLNTG-KIPRVITANRLLRQMLFRYQEEECKKLVRDAIA 329
D++ E L TG R + + + E + LV +
Sbjct: 115 YADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMR 174
Query: 330 AGVFNDLGSGSNIDLC 345
+ D S +
Sbjct: 175 VLYYRDARSYNRFQTA 190
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 138 bits (348), Expect = 1e-38
Identities = 34/239 (14%), Positives = 83/239 (34%), Gaps = 38/239 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++ + +GV++ AD + +++ +++ + N +G +D Q
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 65
Query: 283 LIASQLELLKLN-----TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
L+ + + + L ++++ + +
Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSK------------------- 106
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNW 396
+ A+++ GV G + + P G G+ A +
Sbjct: 107 -------MNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159
Query: 397 K-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVK 449
P T + ++ + +A+ + D S N L +I KN G+ + + ++ N+K
Sbjct: 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 218
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (135), Expect = 1e-09
Identities = 23/206 (11%), Positives = 58/206 (28%), Gaps = 27/206 (13%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC-YLLSYSDLIAVTVSSIG-------- 204
TGT+++ + +GV++ AD + +++ L+ D V +S
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 65
Query: 205 -FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
+ + A + + T++ ++ +
Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYL-------------ATVMYQRRSKMNPLWN 112
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK----IPRVITANRLLRQMLFRYQEEE 319
I +L+ L TG ++ + + +
Sbjct: 113 AIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQV 172
Query: 320 CKKLVRDAIAAGVFNDLGSGSNIDLC 345
++ + +A+ + D S N L
Sbjct: 173 AEEAIVNAMRVLYYRDARSSRNFSLA 198
|
| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 137 bits (345), Expect = 5e-38
Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 33/246 (13%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GVV+ + +++ ++ + K+ + +I +G D +V
Sbjct: 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLAMS-ETLSKVSLLTPDIGAVYSGMGPDYRVL 85
Query: 281 TDLIA--SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS 338
D + ++ P + + + + M Q
Sbjct: 86 VDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQS--------------------- 124
Query: 339 GSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP 398
+ + L+ G + G L+ + P GS +G GS+AA + E W
Sbjct: 125 ---GGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND 181
Query: 399 NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRF 458
+ E+ + + V + +G I+L +I + L I KG + F
Sbjct: 182 ELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGIPTDKGPR-----F 235
Query: 459 KRGTTA 464
++ T+
Sbjct: 236 RKLTSQ 241
|
| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (124), Expect = 3e-08
Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 12/196 (6%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A K G T +G +GVV+ + +++ ++E + + I S +G +
Sbjct: 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLV 86
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+RK T I+ + + + ++ G
Sbjct: 87 D-------KSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGH 139
Query: 272 GTAADTQ-VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIA 329
D S G + A L + E + + +
Sbjct: 140 DEFNGFSLYQVDPSGSYFPWKATAIG--KGSVAAKTFLEKRWNDELELEDAIHIALLTLK 197
Query: 330 AGVFNDLGSGSNIDLC 345
V + +G I+L
Sbjct: 198 ESVEGEF-NGDTIELA 212
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 135 bits (341), Expect = 9e-38
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 28/232 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIV + GV+L D RAT ++A ++ +K++ + AGTA L A
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+LE + G L M+ + L + G D
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLD---------- 110
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHG--SSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+ + + G + + +GSGSL A S + + P+ EE
Sbjct: 111 ---------ADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEE 161
Query: 404 ECKKLVRDAIAAGVFNDLGSGS-------NIDLCVIKKNGVEYLRPYEIANV 448
+ +++ +D +G I + G ++ + +
Sbjct: 162 TALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSEL 213
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 29/211 (13%), Positives = 64/211 (30%), Gaps = 12/211 (5%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAFLAS 213
TTIV + GV+L D RAT ++A ++ Y+ + ++ + L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273
+ + + A + + + +
Sbjct: 61 VELEHYEKIEGVPLTFDGKANR-----LASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115
Query: 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ-EEECKKLVRDAIAAGV 332
A V+ D++ + E + A L+++ EE + +++
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175
Query: 333 FNDLGSGSNIDLCGHVSAALVLGGVDDTGAH 363
+D +G G A+ + GA
Sbjct: 176 DDDSATGGPDLTRGIYPTAVT---ITQAGAV 203
|
| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 132 bits (334), Expect = 2e-36
Identities = 41/233 (17%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVV + T +V +KN KI + ++I C +G D +
Sbjct: 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHL 84
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + K + L Q + +
Sbjct: 85 VNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLY---------------------- 122
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFE---SNWK 397
+ + + GGVD GAHL+ + P GS G G +A + E +
Sbjct: 123 --NSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHP 180
Query: 398 PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR---PYEIAN 447
++ E K I ++ +++ + L ++
Sbjct: 181 EGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 233
|
| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (124), Expect = 3e-08
Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 18/200 (9%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A + GTT +G DGVV + T +V +KN + I S + +
Sbjct: 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLV 85
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+ +K + A + + +
Sbjct: 86 NRGREEAASFKKLY----------KTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFG 135
Query: 272 GTAADTQ--VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQE----EECKKLVR 325
G + + S TGK +A L +++ + E E K
Sbjct: 136 GVDKNGAHLYMLEPSGSYWGYKGAATGK--GRQSAKAELEKLVDHHPEGLSAREAVKQAA 193
Query: 326 DAIAAGVFNDLGSGSNIDLC 345
I ++ +++
Sbjct: 194 KIIYLAHEDNKEKDFELEIS 213
|
| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 132 bits (332), Expect = 2e-36
Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 27/227 (11%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G FA+GV+L +D + ++ + + +KI + + +G AD +V
Sbjct: 18 AVKKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVL 76
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
D + K+ G + + + + + +Y +
Sbjct: 77 VDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGV------------------- 117
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
+L+ G+D G LF+ P G+ + +GSG A +S E +K N+
Sbjct: 118 -----RPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENL 172
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIA 446
E+E L A+ + + ++ I N E+
Sbjct: 173 PEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVK 218
|
| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.4 bits (112), Expect = 9e-07
Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 22/200 (11%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A K G+T +G FA+GV+L +D + I + D +A S
Sbjct: 18 AVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTS---------- 67
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
G + A VA++ Q Y Y
Sbjct: 68 ---GLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 124
Query: 272 GTAADTQ-----VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFR-YQEEECKKLVR 325
A Q D + E G L + E+E L
Sbjct: 125 IFAGIDQIGPRLFDCDPAGTINEYKATAIG--SGKDAVVSFLEREYKENLPEKEAVTLGI 182
Query: 326 DAIAAGVFNDLGSGSNIDLC 345
A+ + + ++
Sbjct: 183 KALKSSLEEGE-ELKAPEIA 201
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 132 bits (334), Expect = 2e-36
Identities = 33/226 (14%), Positives = 80/226 (35%), Gaps = 25/226 (11%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
+ T +G + +DG+VL A+ + T + + + +K++ + I AG AD ++
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEIL 86
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + + V R L + Y +
Sbjct: 87 INTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG--------------------- 125
Query: 341 NIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN 399
+ + G D G L+ P G+ ++G+ + AA ++ + ++K +
Sbjct: 126 ---GLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDD 182
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
M ++ +L ++ + + ++ I+K + +I
Sbjct: 183 MKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 228
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.5 bits (133), Expect = 2e-09
Identities = 18/194 (9%), Positives = 50/194 (25%), Gaps = 7/194 (3%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
+ T +G + +DG+VL A+ + T + + + L + + L
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEIL 86
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+ + + + + R D + + G
Sbjct: 87 INTARIHAQNYL-------KTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGY 139
Query: 272 GTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAG 331
Q+ T + K + L + ++ +L ++
Sbjct: 140 DDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKT 199
Query: 332 VFNDLGSGSNIDLC 345
+ + ++
Sbjct: 200 TDSSALTYDRLEFA 213
|
| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 132 bits (333), Expect = 2e-36
Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 26/229 (11%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T VG D VVLG + ++ + E+ +KI + N+ AG AD ++
Sbjct: 24 AVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIV 82
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + + +L V R + + RY + ++
Sbjct: 83 INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRP----------------- 125
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
+AL++G D L+ P G+ +G G+ + E N+
Sbjct: 126 ------FGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 179
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANV 448
E + ++ I A + G NI+L V++++ ++ L P EI
Sbjct: 180 IETD-DLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKY 227
|
| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (129), Expect = 8e-09
Identities = 26/194 (13%), Positives = 50/194 (25%), Gaps = 9/194 (4%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A K G+T VG D VVLG + ++ + + D + + + + +
Sbjct: 24 AVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVI 83
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+ R T V ++ + + +
Sbjct: 84 NRARVECQSHRLTVED-------PVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD 136
Query: 272 GTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAG 331
TD + G + L + E ++ I A
Sbjct: 137 FDGTPRLYQTDPSGTYHAWKANAIG--RGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL 194
Query: 332 VFNDLGSGSNIDLC 345
+ G NI+L
Sbjct: 195 LEVVQSGGKNIELA 208
|
| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 132 bits (332), Expect = 3e-36
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 20/227 (8%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G +GVVLG + RAT + + + +KI + ++I C +G AD +
Sbjct: 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLES-DSIEKIVEIDRHIGCAMSGLTADARSM 80
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + L + V + + + + R+ E + + GV
Sbjct: 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGV-------- 132
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
A L+ G D G LF+ P G+ +GSGS A + + W ++
Sbjct: 133 ---------ALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSL 183
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIA 446
T +E + LV + + L +N L I K++G + + A
Sbjct: 184 TLKEAELLVLKILKQVMEEKL-DENNAQLSCITKQDGFKIYDNEKTA 229
|
| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 5/195 (2%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A K G+T +G +GVVLG + RAT + ++ ++ I +S + + +
Sbjct: 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 81
Query: 212 ASKGYSGPTARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270
+ T I V D + + + G
Sbjct: 82 EHARTAAVTHNLYYDEDINVESLTQSV---CDLALRFGEGASGEERLMSRPFGVALLIAG 138
Query: 271 AGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAA 330
Q+ + LL + +E + LV +
Sbjct: 139 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQ 198
Query: 331 GVFNDLGSGSNIDLC 345
+ L +N L
Sbjct: 199 VMEEKL-DENNAQLS 212
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 130 bits (327), Expect = 5e-36
Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 30/224 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT VG D V++ + R T + + KN +K+ + AG D QV +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
++LEL +L + LL ML + +
Sbjct: 61 AELELYRLQRRVNMPIEAVATLLSNMLNQVK----------------------------Y 92
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
L++GG+D H+F+I G S + + GSGS V ES + MT +E
Sbjct: 93 MPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIANV 448
LV AI+A D SG ID+ VI +K+G L +I +
Sbjct: 152 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESR 195
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.4 bits (117), Expect = 2e-07
Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 15/190 (7%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGY 216
TT VG D V++ + R T + + KN + + G +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNG------KKLFQIDTYTGMTIAGLVGDAQV 54
Query: 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAAD 276
+ V + + AT + ++ YM + G
Sbjct: 55 LVRYMKAELELY---RLQRRVNMPIEAVAT----LLSNMLNQVKYMPYMVQLLVGGIDTA 107
Query: 277 TQV-TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND 335
V + D +E + +TG + L Q + +E LV AI+A D
Sbjct: 108 PHVFSIDAAGGSVEDIYASTGSGSPFVYGV-LESQYSEKMTVDEGVDLVIRAISAAKQRD 166
Query: 336 LGSGSNIDLC 345
SG ID+
Sbjct: 167 SASGGMIDVA 176
|
| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 130 bits (327), Expect = 2e-35
Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 28/230 (12%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + +T +G DGVV G + E + +++ + +++ AG AD +
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSL 87
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
D+ + + N G + + + Y +
Sbjct: 88 ADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR------------------ 129
Query: 341 NIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN 399
+ +LG + GA L+ I P G S C +G AA + E
Sbjct: 130 ------PFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 183
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLRPYEIAN 447
MT + K V I ++L + + NG + P +I
Sbjct: 184 MTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIRE 233
|
| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.0 bits (106), Expect = 8e-06
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSI 203
A + +T +G DGVV G + N L + + + V+ +
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80
|
| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 129 bits (324), Expect = 5e-35
Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 29/230 (12%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GV+L AD R + +KI+ + ++I +G AD +V
Sbjct: 27 AVKRGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHICAATSGLVADARVL 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
D + ++ +L V + + +Y
Sbjct: 86 IDRARIEAQINRLTYDIPITVKELAKKICDFKQQYT------------------------ 121
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
+L++ GV++ L+ P G+ +G G +A FE ++ ++
Sbjct: 122 QYGGVRPFGVSLLIAGVNEVP-KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDL 180
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LRPYEIANV 448
+ ++ L A+ + ++L NI++ +K + + + P E+
Sbjct: 181 SFDDAMVLGLVAMGLSIESELVP-ENIEVGYVKVDDRTFKEVSPEELKPY 229
|
| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.7 bits (113), Expect = 1e-06
Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 19/198 (9%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A K G T +G +GV+L AD R + + + + I S
Sbjct: 27 AVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATS---------- 76
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
G + A T + + Q Y +
Sbjct: 77 ---GLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSL 133
Query: 272 GTAADTQV----TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDA 327
A +V TD + LE G +T ++ L A
Sbjct: 134 LIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR-DDLSFDDAMVLGLVA 192
Query: 328 IAAGVFNDLGSGSNIDLC 345
+ + ++L NI++
Sbjct: 193 MGLSIESELVP-ENIEVG 209
|
| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 127 bits (319), Expect = 3e-34
Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 30/234 (12%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A T +G + DGV+L A+ R + +KI+ + +++ C AG +D V
Sbjct: 26 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
T+ + + L + L + Y + K
Sbjct: 86 TNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGK------------------- 126
Query: 341 NIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW-KP 398
+L+ G D G L+ P G+ +G+ S AA+S+ + ++ +
Sbjct: 127 -----RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 181
Query: 399 NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VEYLRPYEIANV 448
MT + L + + S +++ + + + L+ E+ +
Sbjct: 182 EMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 235
|
| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.5 bits (133), Expect = 2e-09
Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 14/198 (7%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCY-LLSYSDLIAVTVSSIGFQKNAF 210
A T +G + DGV+L A+ R + + ++ +A +V+ I N
Sbjct: 26 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 85
Query: 211 LASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270
+ + + A D A ++ G
Sbjct: 86 TNELRLIAQRYLLQ--------YQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIG 137
Query: 271 AGTAADTQV-TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ--EEECKKLVRDA 327
Q+ +D + G A +L+Q + + L
Sbjct: 138 WDKHYGFQLYQSDPSGNYGGWKATCIG--NNSAAAVSMLKQDYKEGEMTLKSALALAIKV 195
Query: 328 IAAGVFNDLGSGSNIDLC 345
+ + S +++
Sbjct: 196 LNKTMDVSKLSAEKVEIA 213
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 125 bits (315), Expect = 3e-34
Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 37/232 (15%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
G ++ + V + AD R + + QKI M +Y AG A D Q +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+L L +L G+ + T ++ +L+ +
Sbjct: 67 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG-------------------------- 100
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV---PFCTMGSGSLAAMSVFESNWKPNMT 401
V+ G+D F + F G+ + + ES W+PNM
Sbjct: 101 --PYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMD 158
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
+ + + A+ V D SG + + +I+K+ + +K + D
Sbjct: 159 PDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI------TTRTLKARMD 204
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (126), Expect = 1e-08
Identities = 20/193 (10%), Positives = 45/193 (23%), Gaps = 15/193 (7%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAFLA 212
G ++ + V + AD R + + + + I + + Q A
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 213 SKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAG 272
+ ++ T + + + +Y I
Sbjct: 67 KFRLNLYELKEGRQIKP------------YTLMSMVANLLYEKRFGPYYTEPVIAGLDPK 114
Query: 273 TAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV 332
T + DLI + + + + A+ V
Sbjct: 115 TFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAV 174
Query: 333 FNDLGSGSNIDLC 345
D SG + +
Sbjct: 175 DRDAVSGMGVIVH 187
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 124 bits (313), Expect = 8e-34
Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 47/234 (20%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G TI+G D VL DTR D + + K+ NI G AAD
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 284 IASQLELLKLN-TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ ++ + K + +A R ++ +L+ +
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKR-------------------------- 101
Query: 343 DLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK---- 397
++ G+D+ G +++ P GS + G+ + M ++
Sbjct: 102 --FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159
Query: 398 -------------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
++ EE KLVRD+ + + G +++ ++ K+GV
Sbjct: 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVR 213
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (133), Expect = 2e-09
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 7/198 (3%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNC---YLLSYSDLIAVTVSSIGFQKNAFL 211
G TI+G D VL DTR D + + + + +++ +
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+ A + + V +Y
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDP 127
Query: 272 -GTAADTQVTTDLIASQL---ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDA 327
G+ Q A+ L L K N +++ L EE KLVRD+
Sbjct: 128 VGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDS 187
Query: 328 IAAGVFNDLGSGSNIDLC 345
+ + G +++
Sbjct: 188 FTSATERHIQVGDGLEIL 205
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 124 bits (311), Expect = 9e-34
Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 25/222 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
++G D V++ +D A + + + + K+ M++ I G A DT + I
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
++L K+ G A R+ L V +A
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLA---------------- 105
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G + G L+ + + PF G G+ +S+ + + P ++ E
Sbjct: 106 ---------GYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
+L+R + + + + +I KNG+ L
Sbjct: 157 VELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK 198
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (108), Expect = 3e-06
Identities = 17/193 (8%), Positives = 45/193 (23%), Gaps = 17/193 (8%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC-YLLSYSDLIAVTVSSIGFQKNAFLASKG 215
++G D V++ +D A + + + + + S+ I + F
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 216 YSGPTAR-KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTA 274
+ + + G + A + ++ AG
Sbjct: 62 KNVQLYKMRNGYELSPTAAA-------------NFTRRNLADCLRSRTPYHVNLLLAGYD 108
Query: 275 ADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ--EEECKKLVRDAIAAGV 332
+ L K + + E +L+R +
Sbjct: 109 EHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQ 168
Query: 333 FNDLGSGSNIDLC 345
+ + +
Sbjct: 169 KRFILNLPTFSVR 181
|
| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 124 bits (311), Expect = 3e-33
Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 32/237 (13%)
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
Y+ +T + D V+ + + D ++ I +++ I G
Sbjct: 21 YAFKATNQTNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCISRTIGMVVNGPIP 79
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND 335
D + ++ + G + + + Y +
Sbjct: 80 DARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQ------------------ 121
Query: 336 LGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFES 394
+ L VD + G ++ P G G + E+
Sbjct: 122 ------RAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLEN 175
Query: 395 NWKPNMTEEECKKLVRDAIAAG------VFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
++K + + ++ + S +++++ V K+ L I
Sbjct: 176 HFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENI 232
|
| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.1 bits (106), Expect = 6e-06
Identities = 9/64 (14%), Positives = 19/64 (29%)
Query: 147 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQ 206
Y+ +T + D V+ + + D + Y+ S I + V+
Sbjct: 21 YAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80
Query: 207 KNAF 210
Sbjct: 81 ARNA 84
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 121 bits (304), Expect = 1e-32
Identities = 37/240 (15%), Positives = 81/240 (33%), Gaps = 44/240 (18%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G TI+ D ++ +DTR ++ + ++ K + + +G D T +
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
I ++L++ K + K +L +L+ +
Sbjct: 68 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYV--------------------- 106
Query: 344 LCGHVSAALVLGGVDDTGAHLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWK----- 397
++GG+D+ G + S F GS S + ++
Sbjct: 107 -------YNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159
Query: 398 ----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
++ + +LV+D + D+ +G + +C++ K G+ V +KD
Sbjct: 160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI------REETVSLRKD 213
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (123), Expect = 3e-08
Identities = 21/193 (10%), Positives = 50/193 (25%), Gaps = 6/193 (3%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD--LIAVTVSSIGFQKNAFLA 212
G TI+ D ++ +DTR ++ + ++ + G
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 213 SKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAG 272
+ + A + +R V +Y
Sbjct: 68 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 127
Query: 273 TAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV 332
+ ++ L L ++ N + + +LV+D +
Sbjct: 128 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPL----SLDRAMRLVKDVFISAA 183
Query: 333 FNDLGSGSNIDLC 345
D+ +G + +C
Sbjct: 184 ERDVYTGDALRIC 196
|
| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 121 bits (305), Expect = 2e-32
Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 31/230 (13%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+ VG VL A RA + +K KI ++ +I AG AD ++
Sbjct: 25 AVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK---KILHVDNHIGISIAGLTADARLL 81
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + + + + V L+ + ++
Sbjct: 82 CNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR------------------ 123
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
L++ G DD G H+F P + ++G+ S +A + E + M
Sbjct: 124 ------PYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 177
Query: 401 --TEEECKKLVRDAIAAGVFNDLG-SGSNIDLCVIKKN-GVEYLRPYEIA 446
E K A+ + + + N+ + ++ K+ +++
Sbjct: 178 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVS 227
|
| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQ 206
A K G+ VG VL A RA + +K + I++ + +
Sbjct: 25 AVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADAR 79
|
| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 121 bits (304), Expect = 3e-32
Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 27/230 (11%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K GT VG + VVLG + R+T K+ + ++ +G AD+++
Sbjct: 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRIL 83
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ + + +L V R + + RY +
Sbjct: 84 IEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS---------------------- 121
Query: 341 NIDLCGHVSAALVLGGVDDT--GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP 398
+ ++ G D L+ P G + T+G S E N+
Sbjct: 122 --GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDR 179
Query: 399 NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIAN 447
++ V+ + + + NI++ V+K + + L EI
Sbjct: 180 KEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQ 229
|
| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.3 bits (104), Expect = 1e-05
Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 14/198 (7%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVSSIGFQKNAF 210
A K GT VG + VVLG + R+T +S + ++ S +
Sbjct: 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRIL 83
Query: 211 LASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270
+ + R T D V + TR + + G
Sbjct: 84 IEKARVEAQSHRLT--------LEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAG 135
Query: 271 AGTAADTQVT--TDLIASQLELLKLNTGKIPRVITANRLLRQML-FRYQEEECKKLVRDA 327
D T+ G+ T L + + ++ V+
Sbjct: 136 FDPRDDEPKLYQTEPSGIYSSWSAQTIGR--NSKTVREFLEKNYDRKEPPATVEECVKLT 193
Query: 328 IAAGVFNDLGSGSNIDLC 345
+ + + NI++
Sbjct: 194 VRSLLEVVQTGAKNIEIT 211
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (296), Expect = 1e-31
Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 32/217 (14%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
G +V D V + D R ++ +KI + +++ G A D ++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMF 66
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+ L KL + T +L+ L+ +
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERR---------------------------- 98
Query: 345 CGHVSAALVLGGVDDTGAHLFNIY--PHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNMT 401
G V+ G++ F G D F G+ S + ES ++PN+
Sbjct: 99 FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
E+ + + A+ D SG + +IKK+ V
Sbjct: 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (127), Expect = 9e-09
Identities = 17/191 (8%), Positives = 42/191 (21%), Gaps = 12/191 (6%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKG 215
G +V D V + D R ++ + + + + ++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGIT-------GLATDVT 60
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
R + + +++ + + +
Sbjct: 61 TLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLY---ERRFGPYFVGPVVAGINSKSGK 117
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ-EEECKKLVRDAIAAGVFN 334
DLI E K + + E+ + + A+
Sbjct: 118 PFIAGFDLIGCIDE-AKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADR 176
Query: 335 DLGSGSNIDLC 345
D SG +
Sbjct: 177 DALSGWGAVVY 187
|
| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 117 bits (293), Expect = 1e-30
Identities = 37/235 (15%), Positives = 71/235 (30%), Gaps = 31/235 (13%)
Query: 216 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275
Y+ + G T V D V+ + D + + + + +NI C G A
Sbjct: 26 YAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDS-STVTHLFKITENIGCVMTGMTA 84
Query: 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND 335
D++ + K G V + + + Y
Sbjct: 85 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY-------------------- 124
Query: 336 LGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFES 394
+ L ++L G+D + G ++ P G G + S E
Sbjct: 125 TQNAEMRPLGCC----MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK 180
Query: 395 NWK--PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LRPYEI 445
K + T E+ + ++ + D S I++ V+ ++ L EI
Sbjct: 181 KVKKKFDWTFEQTVETAITCLSTVLSIDFKP-SEIEVGVVTVENPKFRILTEAEI 234
|
| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.4 bits (107), Expect = 5e-06
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 147 YSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQ 206
Y+ + G T V D V+ + D + + +L ++ I ++ +
Sbjct: 26 YAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 85
|
| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 116 bits (292), Expect = 1e-30
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A G VG A+GVVL + + E++ K+ + K+I +G D +V
Sbjct: 27 AVAGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVL 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
+ L + + + ++ Y +
Sbjct: 86 VHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ----------------------- 122
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM 400
+L++ G ++ +LF P G+ MG + + E + ++
Sbjct: 123 -SGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDL 181
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448
E+ + + + NI++ + + G L P E+ +
Sbjct: 182 ELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTEVKDY 228
|
| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (127), Expect = 1e-08
Identities = 21/194 (10%), Positives = 48/194 (24%), Gaps = 10/194 (5%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFL 211
A G VG A+GVVL + + + + I + S +G +
Sbjct: 27 AVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLV 86
Query: 212 ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGA 271
+ + + + + + ++ CG
Sbjct: 87 HRARKLAQQYYLV--------YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGW 138
Query: 272 GTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAG 331
+D + GK L ++ + E+ +
Sbjct: 139 NEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTF-LEKRYNEDLELEDAIHTAILTLKES 197
Query: 332 VFNDLGSGSNIDLC 345
+ + NI++
Sbjct: 198 FEGQM-TEDNIEVG 210
|
| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 115 bits (289), Expect = 3e-30
Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 32/231 (13%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+ VG VL A R D+ +K KI +++ AG A D +V
Sbjct: 27 AIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK---KIIKCDEHMGLSLAGLAPDARVL 83
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
++ + Q L + V A LL + + S
Sbjct: 84 SNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ--------------------SYG 123
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--- 397
L++ G D +GAHL P G+ + +G+ S A + E
Sbjct: 124 GRPYGVG----LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFI 179
Query: 398 -PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIA 446
+ +E K +AI+ + ++ + N+ + ++ K+ +A
Sbjct: 180 KIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVA 230
|
| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.4 bits (112), Expect = 1e-06
Identities = 22/204 (10%), Positives = 56/204 (27%), Gaps = 27/204 (13%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIG------- 204
A K G+ VG VL A R D+ +K + + ++++ +
Sbjct: 27 AIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKII--KCDEHMGLSLAGLAPDARVLS 84
Query: 205 --FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIH-Y 261
++ +S ++ A + ++ ++ + H
Sbjct: 85 NYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLL 144
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
+ + + LE L + +E
Sbjct: 145 EFQPSGNVTELYGTAIGARSQGAKTYLE---------------RTLDTFIKIDGNPDELI 189
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLC 345
K +AI+ + ++ + N+ +
Sbjct: 190 KAGVEAISQSLRDESLTVDNLSIA 213
|
| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 108 bits (270), Expect = 1e-27
Identities = 25/227 (11%), Positives = 64/227 (28%), Gaps = 41/227 (18%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
G ++V F DGV+ A+ +T K+ + + G + +
Sbjct: 15 GIARGRSVVVLTFRDGVLFVAENPSTAL--------HKVSELYDRLGFAAVGKYNEFENL 66
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
++ + + R L + + +
Sbjct: 67 RRAGIVHADMRGYSYDRRDVTG---RSLANAYAQTLGTIFTEQPK--------------- 108
Query: 341 NIDLCGHVSAALVLGGVD----DTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESN 395
+ + V L+ I GS D F MG + + +
Sbjct: 109 ------PYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRES 162
Query: 396 WKPNMTEEECKKLVRDAIAAGVFNDLGSG----SNIDLCVIKKNGVE 438
++ ++ E + +A+ G + +++++ V+ ++
Sbjct: 163 YRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPR 209
|
| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 44.6 bits (105), Expect = 8e-06
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSI 203
G ++V F DGV+ A+ +T V+E D +
Sbjct: 15 GIARGRSVVVLTFRDGVLFVAENPSTALHKVSE-------LYDRLGFAAVGK 59
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Score = 95.2 bits (236), Expect = 1e-23
Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 36/204 (17%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ V+G D + T + V + N +K+ + + G + +T
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
V A + R E
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEA--------------------------- 93
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+L D + + +GSG A++ ++ + T+
Sbjct: 94 -------LLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLR--NTDLSA 144
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDL 429
+++V A+ + + NI +
Sbjct: 145 REIVEKAMTIAGEICIYTNQNIVI 168
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ V+G D + T + V + N
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNA 31
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Score = 93.3 bits (231), Expect = 7e-23
Identities = 26/213 (12%), Positives = 55/213 (25%), Gaps = 41/213 (19%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKI--HYMAKNIYCCGAGTAADTQVTTD 282
TTI + D + T V K+ + + AG+ AD +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++LE N + + ++L + +
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLE-------------------------- 98
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+ + +G +GSG A++ + K
Sbjct: 99 ---AMLIVMNQDTLLLVSGTGEVIEPDD------GILAIGSGGNYALAAGRALKKHAGES 149
Query: 403 EECKKLVRDA--IAAGVFNDLGSGSNIDLCVIK 433
++ R A A + + + I L ++
Sbjct: 150 MSASEIARAALETAGEI--CVYTNDQIILEELE 180
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI + D + T V K+
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHT 36
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Score = 90.2 bits (223), Expect = 8e-22
Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 41/210 (19%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLI 284
TTIV VV+G D + + V + N +K+ + + AG AD +L
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+LE+ + + K + + + L + +
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLE---------------------------- 92
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
A+++ + + I + +GSG A+S TE
Sbjct: 93 ------AMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAAR--ALVENTELS 144
Query: 405 CKKLVRDA--IAAGVFNDLGSGSNIDLCVI 432
++V + IA + + + +N + +
Sbjct: 145 AHEIVEKSLRIAGDI--CVFTNTNFTIEEL 172
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Score = 44.8 bits (105), Expect = 4e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIV VV+G D + + V + N
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNA 31
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| d1irui_ | 220 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1rypi_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1iruc_ | 250 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1yara1 | 221 | Proteasome alpha subunit (non-catalytic) {Archaeon | 100.0 | |
| d1irue_ | 234 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1rypc_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1irul_ | 201 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1rypf_ | 233 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1irub_ | 233 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1ryph_ | 205 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1rypb_ | 250 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1ryp2_ | 233 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1rypk_ | 198 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1j2pa_ | 243 | Proteasome alpha subunit (non-catalytic) {Archaeon | 100.0 | |
| d1rypa_ | 243 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1yarh1 | 203 | Proteasome beta subunit (catalytic) {Archaeon Ther | 100.0 | |
| d1rype_ | 242 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1iruh_ | 202 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1j2qh_ | 202 | Proteasome beta subunit (catalytic) {Archaeon Arch | 100.0 | |
| d1irug_ | 245 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1rypl_ | 212 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1iruf_ | 238 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1irua_ | 244 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1iru2_ | 217 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1rypg_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1rypd_ | 241 | Proteasome alpha subunit (non-catalytic) {Baker's | 100.0 | |
| d1irud_ | 243 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 100.0 | |
| d1iruj_ | 204 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1ryp1_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1rypj_ | 204 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1q5qa_ | 227 | Proteasome alpha subunit (non-catalytic) {Rhodococ | 100.0 | |
| d1iruk_ | 199 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1q5qh_ | 224 | Proteasome beta subunit (catalytic) {Rhodococcus e | 100.0 | |
| d1iru1_ | 213 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.98 | |
| d2z3ba1 | 180 | HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 | 99.91 | |
| d1m4ya_ | 171 | HslV (ClpQ) protease {Thermotoga maritima [TaxId: | 99.89 | |
| d1g3ka_ | 173 | HslV (ClpQ) protease {Haemophilus influenzae [TaxI | 99.89 | |
| d1ryph_ | 205 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.73 | |
| d1iruh_ | 202 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.7 | |
| d1rypi_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.68 | |
| d1rypl_ | 212 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.68 | |
| d1irui_ | 220 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.67 | |
| d1irul_ | 201 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.67 | |
| d1ryp2_ | 233 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.66 | |
| d1iru2_ | 217 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.66 | |
| d1iruj_ | 204 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.64 | |
| d1yarh1 | 203 | Proteasome beta subunit (catalytic) {Archaeon Ther | 99.64 | |
| d1q5qh_ | 224 | Proteasome beta subunit (catalytic) {Rhodococcus e | 99.63 | |
| d1rypk_ | 198 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.61 | |
| d1rypc_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.6 | |
| d1rypj_ | 204 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.58 | |
| d1ryp1_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.57 | |
| d1iru1_ | 213 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.55 | |
| d1iruk_ | 199 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.55 | |
| d1j2qh_ | 202 | Proteasome beta subunit (catalytic) {Archaeon Arch | 99.55 | |
| d1iruc_ | 250 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.53 | |
| d1irue_ | 234 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.53 | |
| d1yara1 | 221 | Proteasome alpha subunit (non-catalytic) {Archaeon | 99.52 | |
| d1rypb_ | 250 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.5 | |
| d1j2pa_ | 243 | Proteasome alpha subunit (non-catalytic) {Archaeon | 99.48 | |
| d1rype_ | 242 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.47 | |
| d1irub_ | 233 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.46 | |
| d1rypg_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.41 | |
| d1irug_ | 245 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.39 | |
| d1rypa_ | 243 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.38 | |
| d1iruf_ | 238 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.34 | |
| d1irud_ | 243 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.34 | |
| d1rypd_ | 241 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.32 | |
| d1rypf_ | 233 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.32 | |
| d1irua_ | 244 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.31 | |
| d1q5qa_ | 227 | Proteasome alpha subunit (non-catalytic) {Rhodococ | 99.29 | |
| d2z3ba1 | 180 | HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 | 96.34 | |
| d1g3ka_ | 173 | HslV (ClpQ) protease {Haemophilus influenzae [TaxI | 96.13 | |
| d1m4ya_ | 171 | HslV (ClpQ) protease {Thermotoga maritima [TaxId: | 95.69 |
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-40 Score=319.08 Aligned_cols=219 Identities=65% Similarity=1.123 Sum_probs=212.2
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+|||+++|||++|+|++.+.+.++.+.+.+||++|++|+++++||..+|++.+.+.++.+++.|++.++..+++..++
T Consensus 1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (220)
T d1irui_ 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (220)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++++|+++ +|++++++++|+|++||+||++||.|++.+++++|+|+|+
T Consensus 81 ~~l~~~~y~~~-----------------------------~p~~~~~ivaG~D~~g~~L~~id~~G~~~~~~~~a~Gsgs 131 (220)
T d1irui_ 81 RMLKQMLFRYR-----------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGS 131 (220)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHhhhhhcc-----------------------------cccceeEEEEEEeCCCcEEEEEeCCCcEEEeeEEEEcccc
Confidence 99999988766 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCccccCCceee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~~~~~~~~~~ 465 (486)
++++++|++.|+++||++||++++++||+.+.++|+.++++++|++|++||+++++|+++++.|..+...++++.|++++
T Consensus 132 ~~a~~~L~~~~~~~~s~~ea~~l~~~al~~~~~~D~~sg~~i~i~vitkdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (220)
T d1irui_ 132 LAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211 (220)
T ss_dssp HHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCCSCCCCCTTCSCB
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEECCCeEEeCcccccchhhhhhhccccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEE
Q psy10990 466 LSTQRIPI 473 (486)
Q Consensus 466 ~~~~~~~~ 473 (486)
+.+...|+
T Consensus 212 ~~~~~~~~ 219 (220)
T d1irui_ 212 LTEKITPL 219 (220)
T ss_dssp SCCCCCBC
T ss_pred eeeeeEEC
Confidence 99887664
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.9e-39 Score=306.89 Aligned_cols=216 Identities=54% Similarity=0.899 Sum_probs=206.7
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.++..|++.++.++++..++
T Consensus 1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a 80 (222)
T d1rypi_ 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence 68999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.++.++ +|++++++++|+|++||+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~~~~~~-----------------------------~p~~~~~l~aG~d~~g~~Ly~id~~G~~~~~~~~a~Gsg~ 131 (222)
T d1rypi_ 81 QMLKQHLFKYQ-----------------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGS 131 (222)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHHHHHhhh-----------------------------hccceeEEEEEEcCCCcEEEEEecCcceEEeeEEEECCCc
Confidence 99998877655 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCccccccccCcCCCCccccCCcee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVKGKKDGDYRFKRGTTA 464 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI~~~~~~~~~~~~~~~~~~~ 464 (486)
++++++||+.|+++||++||++++++||+.+.++|..++++++|++++++ +.++++++..++++..++..++||+|+++
T Consensus 132 ~~a~~~Le~~~k~~ms~eea~~l~~~al~~a~~~D~~sg~~i~i~vi~~~~~~~~~~~~~~~~~~~~~~~~~kf~~~~~~ 211 (222)
T d1rypi_ 132 LAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211 (222)
T ss_dssp HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSC
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEcCCCeEEecCcCCchhhhhhhhccCCCCCcee
Confidence 99999999999999999999999999999999999999999999999987 48889999999999999999999999999
Q ss_pred eeeEEE
Q psy10990 465 LLSTQR 470 (486)
Q Consensus 465 ~~~~~~ 470 (486)
|++|..
T Consensus 212 v~~~~~ 217 (222)
T d1rypi_ 212 VLKESI 217 (222)
T ss_dssp EEEEEE
T ss_pred eEeeee
Confidence 999864
|
| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-38 Score=311.27 Aligned_cols=222 Identities=20% Similarity=0.254 Sum_probs=207.2
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++|+|++|. .++|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.+.+
T Consensus 11 fsp~Grl~QvEyA-~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 89 (250)
T d1iruc_ 11 FSPEGRLYQVEYA-MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 89 (250)
T ss_dssp CCTTSCCHHHHHH-HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHHH-HHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHH
Confidence 6778999999995 588999999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.++..++++.+++.++++++.+++ .++ .|||+++++++|+|+ .||+
T Consensus 90 r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~------------------~~~------~rP~~~~~li~G~D~~~gp~ 145 (250)
T d1iruc_ 90 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ------------------FGG------KRPFGVSLLYIGWDKHYGFQ 145 (250)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BSS------CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhh------------------hcc------CCcceEEEEEEEEcCCCCCE
Confidence 999999999999999999999999999998882 111 389999999999997 5799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC----EE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG----~~ 438 (486)
||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||+.+.++|..++++++|++|++++ ++
T Consensus 146 Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~Le~~y~~~~ms~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~~~~~~ 225 (250)
T d1iruc_ 146 LYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIR 225 (250)
T ss_dssp EEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEE
T ss_pred EEEEcccccEeeeeEEEeCcChHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCCceeEE
Confidence 99999999999999999999999999999999985 89999999999999999999999999999999999987 88
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
.++++||++++..
T Consensus 226 ~l~~~Ei~~~l~~ 238 (250)
T d1iruc_ 226 VLKQKEVEQLIKK 238 (250)
T ss_dssp ECCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999987544
|
| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1.8e-38 Score=303.77 Aligned_cols=218 Identities=22% Similarity=0.351 Sum_probs=199.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++| .++++++|+|+||++++||||+|+|++.+.+. ....+.+||++|++|+++++||..+|++.+.+.+
T Consensus 3 fsp~G~l~QvEY-a~~av~~G~t~vgi~~~dgVvlaad~r~~~~~-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~ 80 (221)
T d1yara1 3 FSPDGRLFQVEY-AREAVKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 80 (221)
T ss_dssp CCTTSCCHHHHH-HHHHHTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHhcCCcEEEEEeCCEEEEEEecccCCcc-cccCccceEEEecCCceEEeeeccchHHHHHHHH
Confidence 567889999999 56778999999999999999999999987544 4567789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+++.++++.+++.++++++.+++ ..+ .|||+++++++|+|++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~------------------~~~------~rP~~~~~li~G~d~~gp~L 136 (221)
T d1yara1 81 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQ------------------YGG------VRPYGVSLIFAGIDQIGPRL 136 (221)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BTT------BCCCCEEEEEEEECSSCEEE
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh------------------hcc------CCCcceEEEEEEEecCCCeE
Confidence 999999999999999999999999999988872 111 38999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~~ 443 (486)
|++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|. +.++++|++|++ +++++++++
T Consensus 137 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~~-~~~~~ei~~i~~~~~~r~l~~~ 215 (221)
T d1yara1 137 FDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQE 215 (221)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHH
T ss_pred EEEcCCccEEEeeEEEECCchHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEcCCCEEECCHH
Confidence 999999999999999999999999999999999999999999999999999988775 678999999997 479999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
||++++
T Consensus 216 ei~~~l 221 (221)
T d1yara1 216 EVKKFL 221 (221)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 999864
|
| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-38 Score=305.35 Aligned_cols=224 Identities=22% Similarity=0.293 Sum_probs=202.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++|. .+++++|+|+||++++||||+|+|++.+.+.+. ..+.+||++|++++++++||..+|++.+.+.+
T Consensus 8 fsp~G~l~QvEYa-~kav~~G~t~vgik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (234)
T d1irue_ 8 FSPEGRLFQVEYD-IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 85 (234)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHHH-HHHHHcCCCEEEEEeCCEEEEEEecCccCCCcc-cCcccCEEEccCcEEEEEeeccchHHHHHHHH
Confidence 6778999999994 577899999999999999999999998877655 56778999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|.+.++++++++.+++.+++++|.|++. +|..---.|||++++++||||++||+|
T Consensus 86 ~~~~~~~~~~~~~~i~~~~la~~i~~~~~~~t~~-------------------~~~~~~~~rP~~~~~il~G~D~~gp~L 146 (234)
T d1irue_ 86 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEE-------------------DADPGAMSRPFGVALLFGGVDEKGPQL 146 (234)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCST-------------------TCCSSCBSSCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhc-------------------ccccccccccceEEEEEEEEcCCCCEE
Confidence 9999999999999999999999999999988731 111111248999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~ 443 (486)
|.+||+|++.+++++|+|+|++.++++||+.|+++|+++||++++++||+.+.++| .++++++|++|+++ ++++++++
T Consensus 147 y~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~eeai~~a~~al~~~~~~~-~~~~~iei~ii~~~~~~k~l~~~ 225 (234)
T d1irue_ 147 FHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK-LNATNIELATVQPGQNFHMFTKE 225 (234)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSC-CCTTSEEEEEECSSSCCEECCHH
T ss_pred EEEecCcccceeeeEEeCCchHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CCCCCEEEEEEECCCCEEECCHH
Confidence 99999999999999999999999999999999999999999999999999988777 47788999999986 79999999
Q ss_pred ccccccC
Q psy10990 444 EIANVKG 450 (486)
Q Consensus 444 eI~~~~~ 450 (486)
||++++.
T Consensus 226 ei~~~l~ 232 (234)
T d1irue_ 226 ELEEVIK 232 (234)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998764
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-38 Score=305.96 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=207.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|.+.+.+.+
T Consensus 12 fsp~G~~~Qveya-~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 90 (244)
T d1rypc_ 12 FSPEGRLYQVEYA-LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90 (244)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcChHHHHH-HHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHH
Confidence 6678999999995 588999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|.+.+++.++++.+++.++++++.+++. ++ .|||+++++++|+|+ .||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~-----~rP~~~~~ll~G~d~~~gp~ 146 (244)
T d1rypc_ 91 RIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQH-------------------GG-----LRPFGVSFIYAGYDDRYGYQ 146 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB-------------------SS-----CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhhhc-------------------cc-----cCccceeEEEEEEecCCCce
Confidence 9999999999999999999999999999887731 11 389999999999996 5799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC------E
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG------V 437 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG------~ 437 (486)
||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|++++ +
T Consensus 147 Ly~id~~Gs~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~~~~~~~ 226 (244)
T d1rypc_ 147 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQ 226 (244)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEE
T ss_pred EEEecCCCcEeeeeeeeccchhHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCcccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred EEcCccccccccCc
Q psy10990 438 EYLRPYEIANVKGK 451 (486)
Q Consensus 438 ~~l~~~eI~~~~~~ 451 (486)
++++++||+.++.+
T Consensus 227 ~~~~~~Ei~~~l~k 240 (244)
T d1rypc_ 227 KIFKPQEIKDILVK 240 (244)
T ss_dssp EECCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 78999999887654
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-37 Score=293.03 Aligned_cols=195 Identities=26% Similarity=0.391 Sum_probs=188.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|++.++..++++.++
T Consensus 1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (201)
T d1irul_ 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (201)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence 68999999999999999999989899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.+|.++ .+||+++++++|+|+++|+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~~~~~~----------------------------~~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~a~G~g~ 132 (201)
T d1irul_ 81 KLLANMVYQYK----------------------------GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGS 132 (201)
T ss_dssp HHHHHHHHTTT----------------------------TSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTH
T ss_pred HHHHHHhhhcc----------------------------CCCceEEEEEEEEecCCceEEEEccCceEEEeeeEEecCch
Confidence 99999998877 27999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
++++++||+.|+++||.+||++++++||+.+.++|..++++++|++|+++|++.++++||++.
T Consensus 133 ~~~~~~Le~~~~~~ms~eea~~l~~~~l~~~~~~d~~sg~~~~v~~i~~~G~~~i~~~ev~~~ 195 (201)
T d1irul_ 133 VYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADL 195 (201)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHH
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEeCCceEEECHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999766
|
| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.3e-38 Score=301.62 Aligned_cols=217 Identities=22% Similarity=0.209 Sum_probs=200.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++|. .+++++|+|+||++++||||+|+|++.+..+. .+.+||++|++++++++||..+|++.+.+.+
T Consensus 12 FspdGrl~QvEyA-~kav~~g~t~igi~~~dgvvlaad~~~~~~l~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 87 (233)
T d1rypf_ 12 FSPTGRLFQVEYA-LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcChHHHHH-HHHHHcCCCEEEEEECCeEEEEEeccccccCC---cchheEEEcCCCEEEEEeeccccHHHHHHHH
Confidence 6778999999995 58889999999999999999999999887653 4568999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.++++++.+++ .++ .|||+++++++|+|++||+|
T Consensus 88 r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~------------------~~~------~RP~gv~~il~G~d~~g~~L 143 (233)
T d1rypf_ 88 RQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ------------------SYG------GRPYGVGLLIIGYDKSGAHL 143 (233)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH------------------BTT------CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHhc------------------ccc------cCCccceEEEEEEcCCCCEE
Confidence 999999999999999999999999999998883 222 39999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW----KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEY 439 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~y----k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~ 439 (486)
|++||+|++.+++++|+|+|++.++++||+.| +++|+++||++++++||+.+.++|..+++++||++|+++ ++++
T Consensus 144 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~~~ 223 (233)
T d1rypf_ 144 LEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTI 223 (233)
T ss_dssp EEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEE
T ss_pred EEEccccceecccEEEecCchHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCeEE
Confidence 99999999999999999999999999998754 679999999999999999999999999999999999988 5899
Q ss_pred cCcccccccc
Q psy10990 440 LRPYEIANVK 449 (486)
Q Consensus 440 l~~~eI~~~~ 449 (486)
++++||+.++
T Consensus 224 l~~~ei~~~i 233 (233)
T d1rypf_ 224 YDGEAVAKYI 233 (233)
T ss_dssp EEGGGGGGGC
T ss_pred CCHHHHHhhC
Confidence 9999998864
|
| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.6e-38 Score=300.34 Aligned_cols=220 Identities=17% Similarity=0.221 Sum_probs=204.2
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.+.+. ..+.+|+++|++++++++||..+|++.+.+.+
T Consensus 12 fsp~Gr~~Qveya-~kav~~G~tvigik~~dgVvlaaD~r~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~ 89 (233)
T d1irub_ 12 FSPSGKLVQIEYA-LAAVAGGAPSVGIKAANGVVLATEKKQKSILYD-ERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSCEEEEEECCCCCSSBC-STTCCSSEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcChHHHHH-HHHHHcCCCEEEEEeCCEEEEEEeCCcccCCcc-ccccceEEEecCceEEEEeccchHHHHHHHHH
Confidence 6778999999995 588899999999999999999999998888754 67889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.++++++++.+++.+++.++.++.. .-.||+++.++++|+|++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------~~~~p~~~~~li~g~d~~~~~l 145 (233)
T d1irub_ 90 RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQS------------------------GGVRPFGVSLLICGWNEGRPYL 145 (233)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS------------------------BTBCCCSEEEEEEEECSSSEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc------------------------cccccceEEEeeeecccCCceE
Confidence 9999999999999999999999999999877620 0138999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|. ++++++|++++++|+++++|+|
T Consensus 146 y~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g~~~l~~~e 224 (233)
T d1irub_ 146 FQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTE 224 (233)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCC-CSSSEEEEEEETTEEEECCHHH
T ss_pred EEEcCCcceEeccceecCCcHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHhccC-CCCcEEEEEEeCCCeEECCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 5678999999999999999999
Q ss_pred cccccCc
Q psy10990 445 IANVKGK 451 (486)
Q Consensus 445 I~~~~~~ 451 (486)
|++++..
T Consensus 225 I~~~l~~ 231 (233)
T d1irub_ 225 VKDYLAA 231 (233)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9988753
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.9e-37 Score=289.79 Aligned_cols=198 Identities=29% Similarity=0.532 Sum_probs=184.2
Q ss_pred ccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy10990 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP 299 (486)
Q Consensus 220 ~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~ 299 (486)
..|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.+.++.+++.|++++++.+
T Consensus 4 ~~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (205)
T d1ryph_ 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS 83 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 45889999999999999999999999988888888999999999999999999999999999999999999999999765
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCe
Q psy10990 300 RVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPF 378 (486)
Q Consensus 300 ~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~ 378 (486)
+..+++.+++++|.++ +||++++++||+|+ ++|+||++||.|++.++++
T Consensus 84 -~~~~~~~~~~~~~~~~-----------------------------~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~ 133 (205)
T d1ryph_ 84 -TETAASVFKELCYENK-----------------------------DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPY 133 (205)
T ss_dssp -HHHHHHHHHHHHHHTT-----------------------------TTCCEEEEEEEEETTTEEEEEEECTTSCCEEESE
T ss_pred -HHHHHHHHHHHHHhCc-----------------------------cCceEEEEEEeecCCCCcEEEEECCCCcEEecCe
Confidence 6778888888877665 79999999999997 5799999999999999999
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE--cCcccccc
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LRPYEIAN 447 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~--l~~~eI~~ 447 (486)
+|+|+|+.+++++||+.|+++||++||++++++||+.+.++|+.++++++|++|++||+++ +.|+|+++
T Consensus 134 ~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~~~~~e~~~ 204 (205)
T d1ryph_ 134 AIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDEYEQ 204 (205)
T ss_dssp EEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECHHHHTC
T ss_pred EEeecCcHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEecCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999765 46787765
|
| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-37 Score=301.59 Aligned_cols=212 Identities=21% Similarity=0.334 Sum_probs=191.1
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++|+|++|. .++|++|+|+||++++||||+|+|++.+.+.+. ..+.+||++|++|+++++||..+|.+.+.+.+
T Consensus 12 fsp~G~l~QvEyA-~kav~~G~tvvgi~~~dgVvlaad~r~~~~~~~-~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~ 89 (250)
T d1rypb_ 12 FSPSGKLGQIDYA-LTAVKQGVTSLGIKATNGVVIATEKKSSSPLAM-SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89 (250)
T ss_dssp BCTTSCBHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCSCSSBC-GGGCCSSEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeehHHHHH-HHHHHcCCCEEEEEeCCEEEEEEecccCCcccc-ccccceeEeccCCEEEEeeecccHHHHHHHHH
Confidence 6778999999995 478999999999999999999999998877654 56789999999999999999999999999999
Q ss_pred HHHHH-HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 285 ASQLE-LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 285 r~~l~-~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
+.++. .|...++..++++.+++.++++++.+++. ++ .|||+++++++|+|+ .||
T Consensus 90 ~~~~~~~y~~~~~~~~~~~~la~~~~~~~~~~~~~-------------------~~-----~rp~~v~~li~G~D~~~gp 145 (250)
T d1rypb_ 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQS-------------------GG-----VRPFGVSLLIAGHDEFNGF 145 (250)
T ss_dssp HHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTS-------------------BT-----BCCCCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh-------------------cC-----CcCeeEEEEEEEecCCCCC
Confidence 99886 48899999999999999999999888721 11 389999999999997 679
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCc
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRP 442 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~ 442 (486)
+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|. ++.+++|++|++++...+.+
T Consensus 146 ~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~vi~~~~~~~~~~ 224 (250)
T d1rypb_ 146 SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGY 224 (250)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSE
T ss_pred EEEEEcCcEEEEEeeEEecCcchHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEEeCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999985 78999999999987544443
Q ss_pred c
Q psy10990 443 Y 443 (486)
Q Consensus 443 ~ 443 (486)
.
T Consensus 225 ~ 225 (250)
T d1rypb_ 225 T 225 (250)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-37 Score=294.84 Aligned_cols=215 Identities=16% Similarity=0.252 Sum_probs=197.5
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc---
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT--- 295 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~--- 295 (486)
+.++.+|+|+||++++||||+|+|++.+.+.+....+.+||++|++++++++||..+|++.+.+.++.++..|++.+
T Consensus 2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~ 81 (233)
T d1ryp2_ 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCC
Confidence 35788999999999999999999999887778888899999999999999999999999999999999999998876
Q ss_pred --CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCc
Q psy10990 296 --GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGS 372 (486)
Q Consensus 296 --g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs 372 (486)
+..+++..+++++++.+|..+.. .+||+++++++|+|.+| |+||.+||+|+
T Consensus 82 ~~~~~~~~~~~a~~l~~~~y~~~~~--------------------------~~P~~~~~liaG~d~~g~~~ly~~d~~G~ 135 (233)
T d1ryp2_ 82 DAEEALEPSYIFEYLATVMYQRRSK--------------------------MNPLWNAIIVAGVQSNGDQFLRYVNLLGV 135 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHT--------------------------TCCCCEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCCcccCHHHHHHHHHHHHHhhccc--------------------------cCCceeEEEEEEEcCCCCeEEEEEcCCCc
Confidence 45688999999999988755410 28999999999999755 78999999999
Q ss_pred eeecCeEEEcCchhHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCccccc
Q psy10990 373 SDTVPFCTMGSGSLAAMSVFESNWK-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIA 446 (486)
Q Consensus 373 ~~e~~~~AiGsGs~~a~~~Lek~yk-----~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI~ 446 (486)
+.+++++|+|+|+++++++||+.|+ ++||+|||++++++||+.+.+||+.++++++|++|++| |+++++|++|+
T Consensus 136 ~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~~~~~ie 215 (233)
T d1ryp2_ 136 TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVE 215 (233)
T ss_dssp EECCSEEECTHHHHHHHHHHTTTCCSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred EEeeeeEEecCccHHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEECChhcch
Confidence 9999999999999999999999998 78999999999999999999999999999999999998 79999999998
Q ss_pred c-ccCcCCCCcccc
Q psy10990 447 N-VKGKKDGDYRFK 459 (486)
Q Consensus 447 ~-~~~~~~~~~~~~ 459 (486)
+ .|.+++....|.
T Consensus 216 ~~~~~~a~~~~~~~ 229 (233)
T d1ryp2_ 216 NMKWDFAKDIKGYG 229 (233)
T ss_dssp SCCCGGGGGCCSSS
T ss_pred hhhhhHhhhccCcC
Confidence 8 699999988883
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.6e-37 Score=286.66 Aligned_cols=195 Identities=18% Similarity=0.277 Sum_probs=185.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++|||++|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (198)
T d1rypk_ 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred eEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeecCeEEEcC
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTVPFCTMGS 383 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~~~~AiGs 383 (486)
+++++.++.+++ . .|||++++|+||||+ +||+||++||+|++.+++++|+|+
T Consensus 82 ~~i~~~~~~~~~--------------------~------~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~ 135 (198)
T d1rypk_ 82 SFVRQELAKSIR--------------------S------RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135 (198)
T ss_dssp HHHHHHHHHHTT--------------------S------SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTT
T ss_pred HHHHHHHHHHHh--------------------c------ccccceEEEEEEEecCCCceEEEEecccccEEecceEEEec
Confidence 999998887651 0 289999999999996 479999999999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccc
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIA 446 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~ 446 (486)
|+.+++++||+.|+++||++||++++++||+.+.++|..++++++|++|++||++.++++|++
T Consensus 136 gs~~~~~~Le~~~~~~~~~eea~~l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~~~~~~~ 198 (198)
T d1rypk_ 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ 198 (198)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCSCC
T ss_pred cchhhHHHHHhcccccCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEcchhccC
Confidence 999999999999999999999999999999999999999999999999999999999999875
|
| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.9e-37 Score=298.27 Aligned_cols=218 Identities=21% Similarity=0.319 Sum_probs=200.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++|. .+++++|+|+|||+++||||+|+|++.+.+++.. .+.+||++|++++++++||..+|++.+.+.+
T Consensus 12 fsp~Grl~QvEya-~kav~~G~t~Igik~~dgVvlaad~r~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 89 (243)
T d1j2pa_ 12 FSPDGRLFQVEYA-REAVKRGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHICAATSGLVADARVLIDRA 89 (243)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCG-GGCCSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCcchHHHHH-HHHHHcCCCEEEEEECCEEEEEEecCccccCccc-cccccEeecCCcEEEEeeecccHHHHHHHHH
Confidence 6778999999994 6778999999999999999999999998887654 5789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|.+.++..++++.+++.+++.+|.+++. . + .|||+++++++|+|+ +|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~-~-----~rP~~~~~il~G~D~-~p~L 144 (243)
T d1j2pa_ 90 RIEAQINRLTYDIPITVKELAKKICDFKQQYTQY------------------G-G-----VRPFGVSLLIAGVNE-VPKL 144 (243)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSB------------------T-T-----BCCCCEEEEEEEESS-SEEE
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhh------------------c-c-----CCccceeEEEEEecC-CceE
Confidence 9999999999999999999999999999988821 1 1 389999999999986 5999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--CEEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--GVEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G~~~l~~ 442 (486)
|.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|. +++++||++++++ +++++++
T Consensus 145 y~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~y~~~ms~eeai~la~~~l~~~~~~d~-~~~~iei~iv~~~~~~~~~l~~ 223 (243)
T d1j2pa_ 145 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSP 223 (243)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCC-CGGGEEEEEEETTTCCCEECCH
T ss_pred EEEeccCceeeeeEEEeCCCcHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccc-CCCceEEEEEEeCCCcEEECCH
Confidence 999999999999999999999999999999999999999999999999999999996 5578999999976 6999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+||+.++.
T Consensus 224 ~ei~~~~~ 231 (243)
T d1j2pa_ 224 EELKPYVE 231 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-37 Score=300.00 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=198.7
Q ss_pred hhHhHHhHhccCCCccccc-ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARK-TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~-~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+|+|++|.. ++++ .|+|+||++++||||+|+|++.+.++ ....+.+||++|++++++++||..+|++.+.+.
T Consensus 10 fsp~Grl~QvEYA~-~av~~~g~T~igik~~dgVvlaad~r~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~ 87 (243)
T d1rypa_ 10 FSPEGRLYQVEYAF-KATNQTNINSLAVRGKDCTVVISQKKVPDKL-LDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87 (243)
T ss_dssp CCTTSCCHHHHHHH-HHTTTTCCCEEEEECSSEEEEEEECCCCCTT-BCGGGCCSEEECSSSCEEEEESCHHHHHHHHHH
T ss_pred ECCCCeehHHHHHH-HHHHccCceEEEEEcCCEEEEEEeccccccc-cccCcccceEecCCCEEEEEecCcHHHHHHHHH
Confidence 67789999999965 4666 47799999999999999999987654 556678899999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.++..|++.++.+++++.+++.+++.++.+++. +. .|||++++|++|||. .||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~a~~ls~~~~~~~~~------------------~~------~rP~~v~~ll~G~D~~~g~ 143 (243)
T d1rypa_ 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR------------------AY------MRPLGVILTFVSVDEELGP 143 (243)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------TT------SCCCSCEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc------------------cc------ccCccceEEEEEEccCCCC
Confidence 99999999999999999999999999999988831 11 389999999999996 579
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-------NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-------dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+||++||+|++.+++++|+|+|+..++++||++|++ ++|.+||++++++||+.+.++|. ++++++|++++++
T Consensus 144 ~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~ 222 (243)
T d1rypa_ 144 SIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKD 222 (243)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETT
T ss_pred eEEEEcCCEEEEecceEEeCccHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Confidence 999999999999999999999999999999999974 56999999999999999999996 7789999999999
Q ss_pred CEEEcCccccccccC
Q psy10990 436 GVEYLRPYEIANVKG 450 (486)
Q Consensus 436 G~~~l~~~eI~~~~~ 450 (486)
|+++++++||++++.
T Consensus 223 g~~~l~~eeI~~~l~ 237 (243)
T d1rypa_ 223 KFFTLSAENIEERLV 237 (243)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred ceEEeCHHHHHHHHH
Confidence 999999999988743
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1.9e-36 Score=285.35 Aligned_cols=197 Identities=30% Similarity=0.389 Sum_probs=187.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|.+.++++++++.++
T Consensus 1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (203)
T d1yarh1 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 80 (203)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 68999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.++++++.++ .|||++++++||+|. +|+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~~~~~~----------------------------~~p~~~~~lvaG~d~-~p~l~~~d~~G~~~~~~~~a~G~g~ 131 (203)
T d1yarh1 81 TLLSNMLNQVK----------------------------YMPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGS 131 (203)
T ss_dssp HHHHHHHHHTT----------------------------TSCCCEEEEEEEESS-SEEEEEECTTCCEEEESEEEESTTH
T ss_pred HHHHHHHHhhc----------------------------cCCccceeEEEEEcC-CCeeEecCCccceecccccccCCCc
Confidence 99999888766 289999999999986 5999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCccccccccCc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRPYEIANVKGK 451 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~~eI~~~~~~ 451 (486)
+.++++||+.|+++||++||++++++||+.+.++|..++++++|++|++ +|++.++++||++++..
T Consensus 132 ~~~~~~L~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~~l~~~ei~~~~~~ 198 (203)
T d1yarh1 132 PFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRK 198 (203)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCEEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995 58999999999988754
|
| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-37 Score=298.33 Aligned_cols=224 Identities=25% Similarity=0.343 Sum_probs=199.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++| ..+++++|+|+||+++++||++|+|++.+.+ +....+.+||++|++++++++||..+|++.+.+.+
T Consensus 7 fsp~G~l~Qvey-a~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~ 84 (242)
T d1rype_ 7 FSPEGRLFQVEY-SLEAIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84 (242)
T ss_dssp BCTTSCBHHHHH-HHHHHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHH
Confidence 677899999999 4677899999999999999999999998877 45566789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|.+.++++++++.+++.++++++.+++. .....---.|||+++++++|+|. ++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~~~~~~~~~rP~~~~~ii~G~D~~~~p~ 146 (242)
T d1rype_ 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEG------------------ASGEERLMSRPFGVALLIAGHDADDGYQ 146 (242)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSS------------------CTTSCCCBSSCCSEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHHHhcc------------------ccccchhccccceEEEEEEEeccccceE
Confidence 9999999999999999999999999999888721 11111111489999999999996 5599
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRP 442 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~ 442 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|. +.++++|++|++ +|++++++
T Consensus 147 L~~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~~-~~~~~~v~~i~~~~g~~~l~~ 225 (242)
T d1rype_ 147 LFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKL-DENNAQLSCITKQDGFKIYDN 225 (242)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEEETTTEEEECCH
T ss_pred EEEEcCCCceeccceeecccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC-CCCceEEEEEECCCCeEECCH
Confidence 9999999999999999999999999999999999999999999999999999998886 556899999986 58999999
Q ss_pred ccccccc
Q psy10990 443 YEIANVK 449 (486)
Q Consensus 443 ~eI~~~~ 449 (486)
++|++++
T Consensus 226 ~~i~~~~ 232 (242)
T d1rype_ 226 EKTAELI 232 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.5e-36 Score=283.65 Aligned_cols=197 Identities=32% Similarity=0.523 Sum_probs=188.7
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|++.++..++++.++
T Consensus 1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T d1iruh_ 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (202)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++.+|+++ +|++++++++|+|+ .+|+||.+||.|++.+.+++|+|+|
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g 131 (202)
T d1iruh_ 81 SLFKEMCYRYR-----------------------------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131 (202)
T ss_dssp HHHHHHHHHTT-----------------------------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGG
T ss_pred HHHHHHHHhhc-----------------------------cceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCC
Confidence 99999998877 79999999999997 5799999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEE--EcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE--YLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~--~l~~~eI~~~~~~ 451 (486)
+++++++|++.|+++||.+||++++++||+.+.++|+.++++++|++|+++|++ +++++||++++..
T Consensus 132 ~~~a~~~L~~~~~~~~~~~ea~~l~~~al~~a~~rD~~sg~~i~v~vi~~~G~~~~~~~~d~~~~~~~~ 200 (202)
T d1iruh_ 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (202)
T ss_dssp GGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeCCCeEEEEcCHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999974 4999999988765
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.5e-36 Score=283.23 Aligned_cols=198 Identities=29% Similarity=0.447 Sum_probs=188.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|.+.|.+.++.+++.|.+.++.+++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T d1j2qh_ 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence 68999999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec-CeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV-PFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~-~~~AiGsG 384 (486)
+.+++++|.++ .+||+++++++|+|+.+|+||.+||+|++.++ +++|+|+|
T Consensus 81 ~~~~~~~~~~~----------------------------~~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~~a~G~g 132 (202)
T d1j2qh_ 81 TLTSNLLNSYR----------------------------YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSG 132 (202)
T ss_dssp HHHHHHHHHTT----------------------------TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTT
T ss_pred HHHHHHHhhhc----------------------------ccceeeEEEEEEEcCCCceEEEEeCCCCeEeecceEEccCC
Confidence 99999998887 27999999999999999999999999997765 59999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++|+||+.++..
T Consensus 133 ~~~~~~~Le~~~~~~ms~~ea~~l~~~al~~~~~~d~~~g~~v~v~~i~~~g~~~~~~~ei~~~l~~ 199 (202)
T d1j2qh_ 133 SLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988653
|
| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-37 Score=300.84 Aligned_cols=218 Identities=20% Similarity=0.217 Sum_probs=197.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+|+|++|. .++|++|+|+||++++||||+|+|++.+.+++. ..+.+||++|++|+++++||..+|++.+.+.+
T Consensus 14 Fsp~Grl~QvEYa-~~av~~G~t~VGik~~dgVvlaad~~~~~~~~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~ 91 (245)
T d1irug_ 14 FSPDGRVFQVEYA-MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIA 91 (245)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeehHHHHH-HHHHHcCCcEEEEEeCCEEEEEEeccccccccc-cCccceEEEcCCCEEEEeccCchhHHHHHHHH
Confidence 6778999999995 488999999999999999999999988777664 56789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.+|+.++++.+++.+++++|.+++ . ++ .|||+++++++|+|. +||+
T Consensus 92 ~~~~~~~~~~~g~~i~~~~la~~la~~~~~~t~------------------~-~~-----~rP~~vs~li~G~D~~~gp~ 147 (245)
T d1irug_ 92 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTL------------------Y-SA-----VRPFGCSFMLGSYSVNDGAQ 147 (245)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------B-SS-----BCCCSEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhc------------------c-cc-----ccccceEEEEEEEcCCCCce
Confidence 999999999999999999999999999998882 1 11 389999999999995 5799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--CEEEcC
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--GVEYLR 441 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G~~~l~ 441 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++||.+||++++++||+.+.+++..++.++++++|+++ +.+.+.
T Consensus 148 Ly~iDp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~~ 227 (245)
T d1irug_ 148 LYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIV 227 (245)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEEC
T ss_pred EEEEcCCceEEeeeEEEECCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEEC
Confidence 999999999999999999999999999999999999999999999999999998888778889999999875 676676
Q ss_pred ccccccc
Q psy10990 442 PYEIANV 448 (486)
Q Consensus 442 ~~eI~~~ 448 (486)
|.|+.+.
T Consensus 228 ~~e~~~~ 234 (245)
T d1irug_ 228 PKDIREE 234 (245)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 7665443
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=286.46 Aligned_cols=195 Identities=24% Similarity=0.364 Sum_probs=185.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.++.+++++.++
T Consensus 1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (212)
T d1rypl_ 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++++|+++ ..|+++..+++|+|+ .||+||.+||+|++.+++++|+|+|
T Consensus 81 ~~ls~~~~~~~----------------------------~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~g 132 (212)
T d1rypl_ 81 KILSNLVYQYK----------------------------GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132 (212)
T ss_dssp HHHHHHHHHTT----------------------------TSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTT
T ss_pred HHHHHHHHHhc----------------------------cCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccC
Confidence 99999998776 157778888888765 5799999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
+++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|++.++++||++.
T Consensus 133 s~~~~~~Le~~~~~~mt~~ea~~l~~~al~~~~~rd~~sg~~v~v~vi~~~g~~~~~~~ev~~~ 196 (212)
T d1rypl_ 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGEL 196 (212)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHH
T ss_pred cccchhHHHHhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCceEEeCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999874
|
| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.4e-37 Score=296.61 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=200.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++|+|++|. .+++++|+|+||++++||||+|+|++.++++.. +.+||++|++++++++||..+|++.+.+.+
T Consensus 10 Fsp~Grl~QvEYA-~kav~~G~t~vgik~~dgVvlaad~~~~~~~~~---~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (238)
T d1iruf_ 10 WSPQGRIHQIEYA-MEAVKQGSATVGLKSKTHAVLVALKRAQSELAA---HQKKILHVDNHIGISIAGLTADARLLCNFM 85 (238)
T ss_dssp CCTTSCCHHHHHH-HHHHHHSCCEEEEECSSEEEEEEECCCSSTTBC---CCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHHH-HHHHhcCCCEEEEEeCCEEEEEEecccccCCCC---ccceEEEeCCceEEEEeccchHHHHHHHHH
Confidence 6778999999994 677899999999999999999999998877653 457999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+|+.++++.+++.+++..+.+++. + + .|||++++++||||++||+|
T Consensus 86 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~y~~~------------------~-~-----~rP~~v~~il~G~D~~gp~L 141 (238)
T d1iruf_ 86 RQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR------------------Y-G-----RRPYGVGLLIAGYDDMGPHI 141 (238)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------T-T-----CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhhc------------------c-C-----CCcccceEEEEEEcCCCceE
Confidence 9999999999999999999999999999888831 1 1 38999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhcCC-CCCCceEEEEEEcC-CEEEc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDL-GSGSNIDLCVIKKN-GVEYL 440 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dm--S~eEAi~La~kaLk~a~~rD~-~sg~~IeI~iItkd-G~~~l 440 (486)
|++||+|++.+++++|+|+|++.++++||+.|+++| |++||++++++||+.++.++. .++.+|+|++|+++ +++++
T Consensus 142 y~~D~~G~~~~~~~~a~G~g~~~~~~~Lek~~~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~~~~l 221 (238)
T d1iruf_ 142 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 221 (238)
T ss_dssp EEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEeeeeEEECCCchhhHHHHHhhcccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCCEEEC
Confidence 999999999999999999999999999999999855 999999999999999886653 57899999999998 69999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++||++++..-
T Consensus 222 ~~~ei~~~l~~i 233 (238)
T d1iruf_ 222 DDDDVSPFLEGL 233 (238)
T ss_dssp CSGGGHHHHTTC
T ss_pred CHHHHHHHHHHH
Confidence 999999987543
|
| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-36 Score=295.72 Aligned_cols=219 Identities=18% Similarity=0.190 Sum_probs=197.7
Q ss_pred hhHhHHhHhccCCCccccccc-ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTG-TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~G-tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|++..+++|++|.. ++|+.| +|+|||++++|||+|+|++.+.+.+. ..+.+||++|++|+++++||..+|++.|.+.
T Consensus 15 Fsp~Grl~QvEYA~-kav~~gg~t~igIk~~dgVVlaad~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 92 (244)
T d1irua_ 15 FSPEGRLYQVEYAF-KAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLD-SSTVTHLFKITENIGCVMTGMTADSRSQVQR 92 (244)
T ss_dssp CCTTSCCHHHHHHH-HHHHTTCCEEEEEECSSEEEEEEECCCCCSSBC-GGGCCSEEESSSSCEEEEEECHHHHHHHHHH
T ss_pred ECCCCeEhHHHHHH-HHHHhCCccEEEEEcCCEEEEEEeccccccccc-CCccceEEEecCCcEEEEecchHHHHHHHHH
Confidence 67789999999964 667765 58999999999999999998766555 4578999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.++..|++.++++++++.+++.++++++.+++. + + .|||++++|++|||+ .||
T Consensus 93 ~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~------------------~-~-----~rP~~v~~ll~G~D~~~g~ 148 (244)
T d1irua_ 93 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN------------------A-E-----MRPLGCCMILIGIDEEQGP 148 (244)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------S-S-----BCCCSEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhcc------------------c-c-----cCccceeeEEEEEcCCCCc
Confidence 99999999999999999999999999999988731 1 1 399999999999997 579
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk--~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~ 438 (486)
+||++||+|++.+++++|+|+|++.++++||++|+ ++||++||++++++||+.+.++|. ++++++|++|++++ ++
T Consensus 149 ~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~d~t~eeai~l~~~~l~~~~~~d~-~~~~iev~ii~~~~~~~~ 227 (244)
T d1irua_ 149 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFR 227 (244)
T ss_dssp EEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCC-CTTSEEEEEEETTEEEEE
T ss_pred EEEEEcCCccEEecceEeccCchhHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEEeCCCcEE
Confidence 99999999999999999999999999999999995 589999999999999999999996 55789999999885 79
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 228 ~l~~~ei~~~l~ 239 (244)
T d1irua_ 228 ILTEAEIDAHLV 239 (244)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999988753
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.9e-36 Score=284.57 Aligned_cols=210 Identities=19% Similarity=0.258 Sum_probs=194.2
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh-hcCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL-NTGK 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l-~~g~ 297 (486)
+.++.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.++..+.+ .++.
T Consensus 2 ~~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T d1iru2_ 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (217)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 356789999999999999999999999888888889999999999999999999999999999999998887765 5678
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP 377 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~ 377 (486)
+++++.+++.+++.+|.++.. .+|++++++++|+|+++|+||.+||+|++.+++
T Consensus 82 ~~~v~~~a~~l~~~~y~~~~~--------------------------~~p~~~~~li~G~d~~~~~l~~~D~~G~~~~~~ 135 (217)
T d1iru2_ 82 SYSPRAIHSWLTRAMYSRRSK--------------------------MNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 135 (217)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT--------------------------TCCCCEEEEEEEEETTEEEEEEECSSCCEEECS
T ss_pred CCCHHHHHHHHHHHHHHhccc--------------------------cCcccceEEEEEEcCCCcEEEEEecCceeEeee
Confidence 999999999999988765510 289999999999999999999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCC
Q psy10990 378 FCTMGSGSLAAMSVFESNW--KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDG 454 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~y--k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~ 454 (486)
++|+|+|+++++++||+.| +++||.+||++++++||+.+.++|..++++++|++|+++|++++.|++++..|+.++.
T Consensus 136 ~~a~G~g~~~a~~~Le~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~~~~~~~~~~~~a~~ 214 (217)
T d1iru2_ 136 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHM 214 (217)
T ss_dssp EEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGC
T ss_pred EEeccCcHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEcCCeeccccHHHHhh
Confidence 9999999999999999965 4899999999999999999999999999999999999999999999999999998854
|
| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-36 Score=292.94 Aligned_cols=220 Identities=20% Similarity=0.231 Sum_probs=196.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+|+|++| ..+++++|+|+||++++||||+|+|++.+.++++. ...+||++|+++++++.||..+|++.+.+.+
T Consensus 11 fsp~Grl~QvEy-a~kav~~G~t~igik~~dgVvlaad~~~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (244)
T d1rypg_ 11 FSPDGRNFQVEY-AVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRG 88 (244)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCT-TTSCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeehHHHH-HHHHHHcCCCEEEEEeCCEEEEEEecccCCCCccc-cccceEEEccCceEEEEccchhhHHHHHHHH
Confidence 677899999999 46779999999999999999999999998887665 4568999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|.+.++++++++.+++.+++.+|.+++ .++ .|||+++++++|||++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~t~------------------~~~------~RP~~~~~iiaG~D~~gp~L 144 (244)
T d1rypg_ 89 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTL------------------YNS------VRPFGVSTIFGGVDKNGAHL 144 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------CTT------BCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhc------------------ccc------cCCceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999998882 111 38999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHh---cCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc---CCE-
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFES---NWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK---NGV- 437 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek---~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk---dG~- 437 (486)
|.+||+|++.+++++|+|+|++.++++||+ .|+++||++||++++++||+.+.+++..++.+++|++|+. ++.
T Consensus 145 y~idp~Gs~~~~~~~a~G~gs~~~~~~Lek~~~~~~~~mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~~~~~~~~ 224 (244)
T d1rypg_ 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 224 (244)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSE
T ss_pred EEEcCCccEEecCeEecCCccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEEEcCCCeE
Confidence 999999999999999999999999999996 6999999999999999999999988888888999999975 344
Q ss_pred EEcCccccccccC
Q psy10990 438 EYLRPYEIANVKG 450 (486)
Q Consensus 438 ~~l~~~eI~~~~~ 450 (486)
+..+.+++++.+.
T Consensus 225 ~~~~~e~~~~~~~ 237 (244)
T d1rypg_ 225 KFVKGDLLQEAID 237 (244)
T ss_dssp EECCTHHHHHHHH
T ss_pred EECCHHHHHHHHH
Confidence 4444455555443
|
| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-36 Score=290.98 Aligned_cols=218 Identities=22% Similarity=0.281 Sum_probs=200.2
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++|+++++||..+|++.+.+.+
T Consensus 9 fsp~Grl~QvEya-~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 87 (241)
T d1rypd_ 9 FSPDGHIFQVEYA-LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87 (241)
T ss_dssp CBTTTBCHHHHHH-HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcEeHHHHH-HHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHH
Confidence 6778999999994 677899999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGA 362 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp 362 (486)
+.++..|++.++++++++.+++.++.+++.+++ .+. .|||+++++++|+|+ +||
T Consensus 88 ~~~~~~~~~~~~~~i~~~~la~~i~~~~~~~t~------------------~~~------~rP~~v~~li~G~d~~~~~p 143 (241)
T d1rypd_ 88 RVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQ------------------SGG------VRPFGVSTLIAGFDPRDDEP 143 (241)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------STT------BCCCSEEEEEEECCTTCCSC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh------------------ccc------cCcccceEEEEEEccccCcc
Confidence 999999999999999999999999999998882 111 389999999999995 479
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP---NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~---dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~ 438 (486)
+||++||+|++.+++++|+|+|++.++++||+.|++ +||.+||++++++||+.+.++ ++++++|+++++| +++
T Consensus 144 ~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~t~~e~i~lal~al~~~~~~---~~~~iei~ii~~d~~~~ 220 (241)
T d1rypd_ 144 KLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT---GAKNIEITVVKPDSDIV 220 (241)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTTEEE
T ss_pred eEEEecCCEEEEeeCeEEECcCHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcC---CCCcEEEEEEECCCCEE
Confidence 999999999999999999999999999999999965 699999999999999998754 4578999999997 689
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 221 ~l~~~ei~~~l~ 232 (241)
T d1rypd_ 221 ALSSEEINQYVT 232 (241)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999987753
|
| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.8e-36 Score=291.11 Aligned_cols=218 Identities=24% Similarity=0.354 Sum_probs=196.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++++|+|++|. .+++++|+|+||++++||||+|+|++.+ +.+....+.+||++|++++++++||..+|++.+.+.+
T Consensus 9 Fsp~Grl~QvEya-~kav~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 86 (243)
T d1irud_ 9 FSPDGHLFQVEYA-QEAVKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRA 86 (243)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHHH-HHHHhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHH
Confidence 6778999999994 6778999999999999999999999865 4455677889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-Cce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~ 363 (486)
+.++..|.+.++.+++++.+++.+++++|.+++. ++ .|||+++++++|+|+. +|+
T Consensus 87 ~~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~-------------------~~-----~rp~~v~~li~G~D~~~~p~ 142 (243)
T d1irud_ 87 RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS-------------------NG-----RRPFGISALIVGFDFDGTPR 142 (243)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSB-------------------TT-----BCCCCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhc-------------------cc-----CCccceEEEEEEEcCCCCCE
Confidence 9999999999999999999999999999988831 11 3999999999999964 799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dm--S~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l 440 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++| +.++++++++++|.... ..++++++|++|+++ +++++
T Consensus 143 Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~~~~~~~~~~~~~i~~ai~~l~~~~---~~~~~~vei~ii~k~~~~~~l 219 (243)
T d1irud_ 143 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVV---QSGGKNIELAVMRRDQSLKIL 219 (243)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTS---CTTSTTCCEEEEESSSCEECC
T ss_pred EEEecCcEEEEeccEEEECCChHHHHHHHHHhcccCCCccHHHHHHHHHHHHHHHh---cCCCCcEEEEEEECCCCEEEC
Confidence 9999999999999999999999999999999999998 77788888888887654 345679999999987 79999
Q ss_pred CccccccccCc
Q psy10990 441 RPYEIANVKGK 451 (486)
Q Consensus 441 ~~~eI~~~~~~ 451 (486)
+++||+.++..
T Consensus 220 ~~~eI~~~l~~ 230 (243)
T d1irud_ 220 NPEEIEKYVAE 230 (243)
T ss_dssp CHHHHHHHTTT
T ss_pred CHHHHHHHHHH
Confidence 99999988754
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.7e-33 Score=260.96 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=178.1
Q ss_pred cccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHH
Q psy10990 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVI 302 (486)
Q Consensus 223 ~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~ 302 (486)
-+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.++..|++.++.+++++
T Consensus 5 ~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T d1iruj_ 5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 84 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred eCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccchH
Confidence 46999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC--CceEEEEccCCceee-cCeE
Q psy10990 303 TANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT--GAHLFNIYPHGSSDT-VPFC 379 (486)
Q Consensus 303 ~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~--Gp~Ly~iDpsGs~~e-~~~~ 379 (486)
.+++.+++++|.++ .+||++++++||+|++ +|.+|.+|+.|.... ..++
T Consensus 85 ~~a~~l~~~~~~~~----------------------------~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~ 136 (204)
T d1iruj_ 85 TLMSMVANLLYEKR----------------------------FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFV 136 (204)
T ss_dssp HHHHHHHHHHHTTT----------------------------TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEE
T ss_pred HHHHHHHHHHHHhh----------------------------hccceeEEEEEEEcCCCCceEEEEecCCCceeeecceE
Confidence 99999999998776 2799999999999974 478999999998665 4589
Q ss_pred EEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 380 TMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
++|+|+++++++|++.|+++||++||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 137 ~~G~g~~~~~~~l~~~~~~~ms~~ea~~l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~ 196 (204)
T d1iruj_ 137 VSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 196 (204)
T ss_dssp EEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred EechhHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999774
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-33 Score=265.01 Aligned_cols=190 Identities=22% Similarity=0.334 Sum_probs=175.6
Q ss_pred ccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC-CCCc
Q psy10990 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG-KIPR 300 (486)
Q Consensus 222 V~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g-~~~~ 300 (486)
+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.++..|++.++ ..+.
T Consensus 6 ~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T d1ryp1_ 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCCCCCc
Confidence 578999999999999999999999998888888999999999999999999999999999999999999998776 5678
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeecCeE
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFC 379 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~~~~ 379 (486)
+..+++.++.+++..+ .+||+++++++|+|+++ |+||.+||+|++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~----------------------------~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~ 137 (222)
T d1ryp1_ 86 INSAARNIQHLLYGKR----------------------------FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCR 137 (222)
T ss_dssp HHHHHHHHHHHHHTTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHhhh----------------------------hhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceE
Confidence 8888887777765444 28999999999999865 799999999999999999
Q ss_pred EEcCchhHHHHHHHhcCC-----------------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 380 TMGSGSLAAMSVFESNWK-----------------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk-----------------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
|+|+|+++++++||+.|+ ++||++||++++++||+.+.++|+.++++++|++|++||++.
T Consensus 138 a~G~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~ 214 (222)
T d1ryp1_ 138 AGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp EEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred EEcccHHHHHHHHHHhhccccccCcccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEE
Confidence 999999999999999987 689999999999999999999999999999999999999875
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-32 Score=255.63 Aligned_cols=189 Identities=21% Similarity=0.275 Sum_probs=176.8
Q ss_pred ccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcH
Q psy10990 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRV 301 (486)
Q Consensus 222 V~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v 301 (486)
..+|+|+|||+++||||+|+|++.+.+.++...+.+||+++ ++++++++|..+|++.+.+.++.+++.|++.++.++++
T Consensus 5 ~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (204)
T d1rypj_ 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 34699999999999999999999999888888899999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CC-ceEEEEccCCceeecC-e
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TG-AHLFNIYPHGSSDTVP-F 378 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~G-p~Ly~iDpsGs~~e~~-~ 378 (486)
+.+++++++++|.++ .+|++++++++|||+ +| |+||++||+|++.+++ +
T Consensus 84 ~~la~~l~~~l~~~~----------------------------~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~ 135 (204)
T d1rypj_ 84 ETFTQLVSSSLYERR----------------------------FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDF 135 (204)
T ss_dssp HHHHHHHHHHHHTTT----------------------------TSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSE
T ss_pred hHHHHHHHHHHHhhc----------------------------ccceeeeEEEEEEecCCCcceEEEeCCCCccccccCc
Confidence 999999999988766 179999999999996 34 8999999999998765 8
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+++|+|+++++++|++.|+++||++||++++++||..+.++|..++++++|++|+++|++.
T Consensus 136 ~~~G~g~~~a~~~l~~~~~~~ms~~ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~ 196 (204)
T d1rypj_ 136 IVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp EEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred EEeecchHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhcCccCCeEEEEEEECCceEE
Confidence 8899999999999999999999999999999999999999999999999999999999664
|
| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=6.1e-33 Score=267.08 Aligned_cols=205 Identities=12% Similarity=0.146 Sum_probs=176.0
Q ss_pred hccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 213 SKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 213 ~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
|++|. .++++.|+|+||+++++|||+|+|++.+ +.+||++|++|+++++||..+|++.|.+.++.+++.|.
T Consensus 8 q~eyA-~~av~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~ 78 (227)
T d1q5qa_ 8 RSELA-RKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG 78 (227)
T ss_dssp HHHHH-HHHHHTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 55663 6779999999999999999999999854 35899999999999999999999999999999999999
Q ss_pred hhcCC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC----CCceEEEE
Q psy10990 293 LNTGK-IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD----TGAHLFNI 367 (486)
Q Consensus 293 l~~g~-~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~----~Gp~Ly~i 367 (486)
+.++. +++++.+++.++++++..... . .|||++++|+||||. .+|+||++
T Consensus 79 ~~~~~~~~~~~~la~~~~~~~~~~~~~-------------------~------~rP~gvs~lvaG~D~~g~~~~p~Ly~v 133 (227)
T d1q5qa_ 79 YSYDRRDVTGRSLANAYAQTLGTIFTE-------------------Q------PKPYEVEICVAEVGRVGSPKAPQLYRI 133 (227)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHHHHHH-------------------S------SSCCCEEEEEEECCCSSCCCCCEEEEE
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHHh-------------------c------CCCceEEEEEEEEecCCCCCCCEEEEE
Confidence 99985 578888998888875432210 0 289999999999985 46999999
Q ss_pred ccCCceeecC-eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCC----CCCCceEEEEEEcCC----EE
Q psy10990 368 YPHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDL----GSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 368 DpsGs~~e~~-~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~----~sg~~IeI~iItkdG----~~ 438 (486)
||+|++.+++ +++.|.+++.++++|++.|+++||++||++++++||+.+.++|. .++.+++|++++++| ++
T Consensus 134 DpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr 213 (227)
T d1q5qa_ 134 TYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFR 213 (227)
T ss_dssp ETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEE
T ss_pred ccccceeeecccccCCCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceE
Confidence 9999988766 56678889999999999999999999999999999999998874 356789999999987 89
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
.++++||+.+++.
T Consensus 214 ~l~~~ei~~~l~~ 226 (227)
T d1q5qa_ 214 RIAGTALEQLVPA 226 (227)
T ss_dssp ECCHHHHHTTSCC
T ss_pred EcCHHHHHHHhcC
Confidence 9999999998865
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-32 Score=252.07 Aligned_cols=196 Identities=20% Similarity=0.310 Sum_probs=183.6
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+++||++++||||+|+|++.+.+.+....+.+||++|+++++++++|..+|++.+.+.++.+++.|...++..++++.++
T Consensus 2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T d1iruk_ 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (199)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred eEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHHH
Confidence 58999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++.++.+... .+|++++++++|+|.+ +|+||.+||.|.+.+.+++++|+|
T Consensus 82 ~~l~~~~~~~~~~--------------------------~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~g 135 (199)
T d1iruk_ 82 NFTRRNLADCLRS--------------------------RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYG 135 (199)
T ss_dssp HHHHHHHHHHHTS--------------------------SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHH
T ss_pred HHHHHHHHHHhhc--------------------------cCCcceeeeecceeccCCceEEeecccceEEeeeeeeeccc
Confidence 9999887655410 2799999999999984 699999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~ 447 (486)
+++++++|++.|+++||++||++++++||+.+.++|..++++++|++|+++|++.++++.+++
T Consensus 136 s~~a~~~l~~~~~~~~~~~ea~~l~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~~~~~~~~~ 198 (199)
T d1iruk_ 136 AFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK 198 (199)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCCCC
T ss_pred chhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcCCcCCceEEEEEcCCCeEEcCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999887754
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=2.9e-32 Score=259.34 Aligned_cols=200 Identities=21% Similarity=0.224 Sum_probs=183.6
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+|||+++||||+|+|++.+.+.++...+.+||++|+++++++++|..+|++.+.+.++.+++.|.+.++..+++..++
T Consensus 1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T d1q5qh_ 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (224)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence 68999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC------CCceEEEEccCCceeec--C
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD------TGAHLFNIYPHGSSDTV--P 377 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~------~Gp~Ly~iDpsGs~~e~--~ 377 (486)
+.+++.+|.++... .+|+++.++++|++. .+|+||.+||+|++.++ +
T Consensus 81 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~ 135 (224)
T d1q5qh_ 81 NRLASMVRGNLGAA-------------------------MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 135 (224)
T ss_dssp HHHHHHHHTTHHHH-------------------------TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSS
T ss_pred HHHHHHHHHhhccc-------------------------ccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccc
Confidence 99999998877320 268888888888763 46999999999998765 6
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc-------eEEEEEEcCCEEEcCccccccccC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN-------IDLCVIKKNGVEYLRPYEIANVKG 450 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~-------IeI~iItkdG~~~l~~~eI~~~~~ 450 (486)
++|+|+|+.+++++||+.|+++||++||++++++||+.+.++|..+|+. +++++++++|++.++++|+++...
T Consensus 136 ~~a~GsG~~~a~~~Le~~~~~~mt~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l~~~ei~~~~~ 215 (224)
T d1q5qh_ 136 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR 215 (224)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred eeeecCccHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEcCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988764 899999999999999999987643
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=3.1e-31 Score=248.76 Aligned_cols=190 Identities=18% Similarity=0.297 Sum_probs=178.7
Q ss_pred ccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcH
Q psy10990 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRV 301 (486)
Q Consensus 222 V~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v 301 (486)
+.+|+|+||++++|||++|+|++.+.+.++...+.+||++|+++++++.+|..+|.+.+.++++.+++.+++.++..+++
T Consensus 6 ~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (213)
T d1iru1_ 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCCchhH
Confidence 46899999999999999999999998888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCceeecCeEE
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCT 380 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~e~~~~A 380 (486)
..+++.++..+|.++ .+|++++.+++|+|.. +|.+|.+||.|++.++++++
T Consensus 86 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a 137 (213)
T d1iru1_ 86 GAIAAMLSTILYSRR----------------------------FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKA 137 (213)
T ss_dssp HHHHHHHHHHHHTTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHH----------------------------hhhcccccceEEEecCCCcEEEecCCcceeeecCeee
Confidence 999999999988766 1689999999999975 58999999999999999999
Q ss_pred EcCchhHHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 381 MGSGSLAAMSVFESNWK---------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 381 iGsGs~~a~~~Lek~yk---------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+|+|+++++++||+.|+ ++||++||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 138 ~G~g~~~a~~~l~~~~~~~~~~~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~ 205 (213)
T d1iru1_ 138 GGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp EETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred ecCccHHHHHHHHHhhcccchhcccccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEE
Confidence 99999999999998764 689999999999999999999999999999999999999874
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=9.3e-26 Score=207.35 Aligned_cols=176 Identities=15% Similarity=-0.018 Sum_probs=121.3
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecc-eeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEE
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKN-CYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAI 232 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~-~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~ 232 (486)
.||||||||+|+||||||||+|+|+|++|++|. ++|++.++.
T Consensus 3 ~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~------------------------------------- 45 (180)
T d2z3ba1 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFN------------------------------------- 45 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETT-------------------------------------
T ss_pred CCCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecc-------------------------------------
Confidence 489999999999999999999999999999886 555554321
Q ss_pred ecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH
Q psy10990 233 FADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML 312 (486)
Q Consensus 233 ~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l 312 (486)
..++++++|...|.+.+.+.++.+...+.... ...+........
T Consensus 46 -------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 89 (180)
T d2z3ba1 46 -------------------------------GKVLAGFAGSVADAFTLFEKFEAKLEEYNGNL-----KRAAVELAKEWR 89 (180)
T ss_dssp -------------------------------TTEEEEECSCHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHH
T ss_pred -------------------------------cceecccchHHHHHHHHHHHHHHHHHhhcccc-----chhHHHHHHHHh
Confidence 12344667888999999887776665433211 111111111111
Q ss_pred HHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHH
Q psy10990 313 FRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVF 392 (486)
Q Consensus 313 ~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 392 (486)
.... .+ .. ..++..... .++.++..++.+......+.|+|+|+.+|+++|
T Consensus 90 ~~~~---------------~~--~~-------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~l 139 (180)
T d2z3ba1 90 SDKV---------------LR--KL-------EAMLIVMNQ------DTLLLVSGTGEVIEPDDGILAIGSGGNYALAAG 139 (180)
T ss_dssp HCTT---------------GG--GC-------CCCEEEECS------SCEEEECTTCCEECCSSSEEEESTTHHHHHHHH
T ss_pred HHHH---------------HH--Hh-------hcceeeeec------cccccccCCceeecccccEEEEcCchHHHHHHH
Confidence 0000 00 00 012212222 334444444444445555889999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 393 ESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 393 ek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
++.|+++||.+||++|+++||+.|.++|..++++++|.+|
T Consensus 140 ~~~~~~~~s~~eA~~l~~~Al~~A~e~dvyT~~~~~~~~i 179 (180)
T d2z3ba1 140 RALKKHAGESMSASEIARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHHhhcEEcCCcEEEEEe
Confidence 9999999999999999999999999999999999999876
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=5.7e-24 Score=193.07 Aligned_cols=170 Identities=14% Similarity=0.014 Sum_probs=124.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
||||||+|+||||||||||+|.|++|++|+++||++++
T Consensus 1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~------------------------------------------ 38 (171)
T d1m4ya_ 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLG------------------------------------------ 38 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEET------------------------------------------
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEec------------------------------------------
Confidence 89999999999999999999999999999999998853
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhh
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ 316 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t 316 (486)
++++++++|..+|.+.+..........+... .. ..........+....
T Consensus 39 ---------------------------~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~ 86 (171)
T d1m4ya_ 39 ---------------------------EGKVLAGFAGSVADAMTLFDRFEAKLREWGG--NL---TKAAVELAKDWRTDR 86 (171)
T ss_dssp ---------------------------TTTEEEEEESCHHHHHHHHHHHHHHHHHTTT--CH---HHHHHHHHHHHHHCT
T ss_pred ---------------------------CCcEEEEEeechhhHHHHHHHHHHHHHHhhc--cc---hhhHHHHHHHHHHhh
Confidence 2222244566778777766555444432211 11 111111111111111
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcC
Q psy10990 317 EEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396 (486)
Q Consensus 317 ~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~y 396 (486)
.++....+..+.++.+|+++..|+.|.....++.|+|+|+.+|+++|+..|
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~ 137 (171)
T d1m4ya_ 87 -----------------------------VLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL 137 (171)
T ss_dssp -----------------------------TGGGCCCEEEEECSSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH
T ss_pred -----------------------------hhcccccccceecCCcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhc
Confidence 122233455567788899999999999999999999999999999999876
Q ss_pred C-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 397 K-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 397 k-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+ ++|+ |.+++++||+.|.++|..++++++|..|
T Consensus 138 ~~~~~~---a~el~~~Ai~~A~e~dvyTg~~~~i~~~ 171 (171)
T d1m4ya_ 138 RNTDLS---AREIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHCCCC---HHHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred cCCCCC---HHHHHHHHHHHHHhhceEcCCcEEEEEC
Confidence 5 5775 7789999999999999999999998754
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=2e-23 Score=190.07 Aligned_cols=172 Identities=17% Similarity=0.078 Sum_probs=120.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
||||||+|+||||||||||+|+|++|++|+++||++++..
T Consensus 1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~---------------------------------------- 40 (173)
T d1g3ka_ 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNG---------------------------------------- 40 (173)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTT----------------------------------------
T ss_pred CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCC----------------------------------------
Confidence 8999999999999999999999999999999999985311
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhh
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQ 316 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t 316 (486)
.++++++|...+.+.+.+..+.....+ +..... .+......+....
T Consensus 41 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~ 86 (173)
T d1g3ka_ 41 ----------------------------KVLAGFAGGTADAFTLFELFERKLEMH-----QGHLLK-SAVELAKDWRTDR 86 (173)
T ss_dssp ----------------------------TEEEEEESCHHHHHHHHHHHHHHHHHT-----TTCHHH-HHHHHHHHHHHST
T ss_pred ----------------------------cEEEEeeehhHhHHHHHHHHHHHHHhh-----cCcchh-HHHHHHHHHHHhh
Confidence 112223444455555444333322211 122111 1111221111111
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcC
Q psy10990 317 EEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396 (486)
Q Consensus 317 ~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~y 396 (486)
..+.....+.++.++.++.++..|+.|.+.+.++.|+|+|+.+|++.|+..|
T Consensus 87 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~ 138 (173)
T d1g3ka_ 87 ----------------------------ALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALV 138 (173)
T ss_dssp ----------------------------TGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHH
T ss_pred ----------------------------hhcccccccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhh
Confidence 0223334445555556799999999999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 397 KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 397 k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+ ++.+||.+++++||+.|.++|..++++++|.+|
T Consensus 139 ~--~~~~~A~ela~~Ai~~Aae~dvyTgd~~~i~~~ 172 (173)
T d1g3ka_ 139 E--NTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 172 (173)
T ss_dssp H--HCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred h--cCCCCHHHHHHHHHHHHHhhcEEcCCcEEEEEC
Confidence 4 455679999999999999999999999998765
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=4e-19 Score=166.87 Aligned_cols=161 Identities=21% Similarity=0.245 Sum_probs=118.5
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
.++++|||+||++|+||||||||+|+|.|.+|.+++.+||++++ +..++.+| + .+..++.+|+.+++.+.
T Consensus 4 ~~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (205)
T d1ryph_ 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS 83 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34799999999999999999999999999999999999999986 55556555 2 23456778888777544
Q ss_pred cccccceeeE-EEec-------CeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVG-AIFA-------DGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 221 aV~~GtTiIg-I~~k-------dGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
+......+. +.+. ..++.|.|.+. ..+.+++.++.. ..+..+.|+|+......|++.+
T Consensus 84 -~~~~~~~~~~~~~~~~~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~------ 151 (205)
T d1ryph_ 84 -TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVH-----KLPYAIAGSGSTFIYGYCDKNF------ 151 (205)
T ss_dssp -HHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCE-----EESEEEESGGGGGGHHHHHHHC------
T ss_pred -HHHHHHHHHHHHHhCccCceEEEEEEeecCCCCcEEEEECCCCcEE-----ecCeEEeecCcHHHHHHHHhhh------
Confidence 333333332 1111 23555788543 345555555542 3477889999999999888744
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++++ .+||.+|+++|+.+++.||..||+++++
T Consensus 152 -----~~~ms----------------~~ea~~l~~~al~~a~~rD~~sg~~v~v 184 (205)
T d1ryph_ 152 -----RENMS----------------KEETVDFIKHSLSQAIKWDGSSGGVIRM 184 (205)
T ss_dssp -----CTTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred -----hcccC----------------HHHHHHHHHHHHHHHHHhcCcCCCCEEE
Confidence 33443 8999999999999999999999987654
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=3.1e-18 Score=159.97 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=117.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~aV~~Gt 226 (486)
|||||++|+||||||+|+|+|.|.+|.+++.+||++++ ++.++.+| +. +..++.+|+.+++.+..+....
T Consensus 1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T d1iruh_ 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (202)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 55555555 22 2446778888777777777666
Q ss_pred eeeEEEe--------cCeEEEEEeCCCC--cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRAT--DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~t--~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-.. ...++.|.|.... .+.+.+.++. ...+..+.|+|+......|++.++
T Consensus 81 ~~l~~~l~~~~~p~~~~~lvaG~d~~~~~~l~~~d~~g~~-----~~~~~~a~G~g~~~a~~~L~~~~~----------- 144 (202)
T d1iruh_ 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM-----VRQSFAIGGSGSSYIYGYVDATYR----------- 144 (202)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC-----EECSEEEESGGGGGGHHHHHHHCC-----------
T ss_pred HHHHHHHHhhccceeEEEEEEEeecCCCcEEEEECCCCce-----eecceeEEeCCHHHHHHHHHHhhc-----------
Confidence 6665321 1235556786432 3333333333 346778889999999888888443
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+.++ .+||.+|+++|+..++.||..||++++++
T Consensus 145 ~~~~----------------~~ea~~l~~~al~~a~~rD~~sg~~i~v~ 177 (202)
T d1iruh_ 145 EGMT----------------KEECLQFTANALALAMERDGSSGGVIRLA 177 (202)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred cCCc----------------HHHHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 3333 89999999999999999999999887654
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=6e-18 Score=160.72 Aligned_cols=157 Identities=36% Similarity=0.409 Sum_probs=115.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++|+||||||||+|+|.|.++.+++++||++++ ++.++.|| +.+ ..+...|++.++.+..+...+
T Consensus 1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a 80 (222)
T d1rypi_ 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence 89999999999999999999999999999999999986 56666666 222 334566666666655555444
Q ss_pred eeeEEE-e-------cCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAI-F-------ADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~-~-------kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..+... + ...++.+.|...+ .+.+.+.++. +..+..+.|+|+......|++.+ .+
T Consensus 81 ~~l~~~~~~~~~p~~~~~l~aG~d~~g~~Ly~id~~G~~-----~~~~~~a~Gsg~~~a~~~Le~~~-----------k~ 144 (222)
T d1rypi_ 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST-----DVGYYLSLGSGSLAAMAVLESHW-----------KQ 144 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHHC-----------CS
T ss_pred HHHHHHHHhhhhccceeEEEEEEcCCCcEEEEEecCcce-----EEeeEEEECCCcHHHHHHHHhhc-----------cC
Confidence 444311 1 1234445775432 4444454443 34678999999999999888743 34
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+++ .+||.+|+++|+..++.||..||++++++
T Consensus 145 ~ms----------------~eea~~l~~~al~~a~~~D~~sg~~i~i~ 176 (222)
T d1rypi_ 145 DLT----------------KEEAIKLASDAIQAGIWNDLGSGSNVDVC 176 (222)
T ss_dssp SCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 444 89999999999999999999999887654
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=8.6e-18 Score=158.21 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=114.5
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++|+||||||||+|+|+|.+|.+++++||++++ ++.++.|| +.+ ..++.+|+..++.+.++...+
T Consensus 1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (212)
T d1rypl_ 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 89999999999999999999999999999999999986 66666666 222 345667777777666665555
Q ss_pred eeeEEE---e------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGAI---F------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI~---~------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++-. + ...++++.|... ..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 81 ~~ls~~~~~~~~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~-----~~~~~~a~G~gs~~~~~~Le~~~----------- 144 (212)
T d1rypl_ 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-----LKGDIFCVGSGQTFAYGVLDSNY----------- 144 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE-----EECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHhccCCcceEeeeeEeecCCCCEEEEECCCceE-----EecceEEEccCcccchhHHHHhc-----------
Confidence 555421 1 123444555442 24455555554 34678999999988888887643
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...|+ .+||.+|+++|+..++.||..||+++++
T Consensus 145 ~~~mt----------------~~ea~~l~~~al~~~~~rd~~sg~~v~v 177 (212)
T d1rypl_ 145 KWDLS----------------VEDALYLGKRSILAAAHRDAYSGGSVNL 177 (212)
T ss_dssp CTTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred cCCCC----------------HHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 23343 8999999999999999999999976553
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.67 E-value=2.1e-17 Score=156.38 Aligned_cols=157 Identities=38% Similarity=0.475 Sum_probs=117.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+|||+|+||||||||+|+|+|.++.+++++||++++ +..++.|| +. +..++..|+++++.+..+...+
T Consensus 1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (220)
T d1irui_ 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (220)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999976 56666666 22 3445778888877777766665
Q ss_pred eeeEEEe--------cCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++..+ ...++.+.|...+ .+.+++.++. ...+..+.|+|+......|.+.+ ..
T Consensus 81 ~~l~~~~y~~~~p~~~~~ivaG~D~~g~~L~~id~~G~~-----~~~~~~a~Gsgs~~a~~~L~~~~-----------~~ 144 (220)
T d1irui_ 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST-----DKLPYVTMGSGSLAAMAVFEDKF-----------RP 144 (220)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHSC-----------CT
T ss_pred HHHHhhhhhcccccceeEEEEEEeCCCcEEEEEeCCCcE-----EEeeEEEEccccHHHHHHHHHhc-----------cc
Confidence 5554221 1245656776543 3344444433 34577889999988888777733 33
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+++ .+||.+|+++|+.+++.||..||++++++
T Consensus 145 ~~s----------------~~ea~~l~~~al~~~~~~D~~sg~~i~i~ 176 (220)
T d1irui_ 145 DME----------------EEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176 (220)
T ss_dssp TCC----------------HHHHHTHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHhhccCCCCCCcEEEE
Confidence 443 88999999999999999999999876544
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.67 E-value=3e-17 Score=153.05 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=115.5
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++|+||||||||+|+|.|.+|.+++++||++++ ++.++.+| ..+..++++|+..++.+..+..-+
T Consensus 1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (201)
T d1irul_ 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (201)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence 89999999999999999999999999999999999985 66777776 223456777877777766666555
Q ss_pred eeeEEEe---------cCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAIF---------ADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~~---------kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-.. ...++.+.|...+ ...+++.++. ...+.++.|+|+......|++.+ .
T Consensus 81 ~~l~~~~~~~~~~p~~~~~lvaG~d~~~~~l~~~d~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~-----------~ 144 (201)
T d1irul_ 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR-----ISGATFSVGSGSVYAYGVMDRGY-----------S 144 (201)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE-----EECSEEEESTTHHHHHHHHHTTC-----------C
T ss_pred HHHHHHhhhccCCCceEEEEEEEEecCCceEEEEccCceE-----EEeeeEEecCchHHHHHHHHhhc-----------c
Confidence 5554221 1245556776543 3344444443 34677889999988888777633 3
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+|+ .+||.+|+++++..++.||..||+++++
T Consensus 145 ~~ms----------------~eea~~l~~~~l~~~~~~d~~sg~~~~v 176 (201)
T d1irul_ 145 YDLE----------------VEQAYDLARRAIYQATYRDAYSGGAVNL 176 (201)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhCCCCCCceEE
Confidence 3443 8999999999999999999999976543
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=7e-18 Score=160.89 Aligned_cols=167 Identities=11% Similarity=0.126 Sum_probs=114.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCC---
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYS--- 217 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~--- 217 (486)
+++.||||+||++++||||||||+|+|.|+++.+++++||++++ ++.++.|| +. +..++..|+.++.
T Consensus 3 ~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 82 (233)
T d1ryp2_ 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred CCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 67889999999999999999999999999999999999999986 55666666 22 3345566666553
Q ss_pred --CcccccccceeeEE-Ee----------cCeEEEEEeCCCCc--CeeeecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 218 --GPTARKTGTTIVGA-IF----------ADGVVLGADTRATD--DTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 218 --~~~aV~~GtTiIgI-~~----------kdGVVlAaDtr~t~--g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
....++..+..++. .+ ...++.+.|..... +.+++.+.. ...+..+.|+|+......|++
T Consensus 83 ~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~-----~~~~~~a~G~g~~~a~~~Le~ 157 (233)
T d1ryp2_ 83 AEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT-----YSSPTLATGFGAHMANPLLRK 157 (233)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE-----ECCSEEECTHHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcE-----EeeeeEEecCccHHHHHHHHH
Confidence 22333333333321 11 12455567754432 334444433 356788888998888777776
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 283 ~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++.+.. -.+ ++.|||++|+++|+.+++.||..||+++++
T Consensus 158 ~~~~~~~------~~~----------------ms~eeA~~l~~~al~~~~~rD~~sg~~i~i 197 (233)
T d1ryp2_ 158 VVDRESD------IPK----------------TTVQVAEEAIVNAMRVLYYRDARSSRNFSL 197 (233)
T ss_dssp TCCSGGG------GGG----------------CCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred HHhhccc------ccc----------------cCHHHHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 4422110 012 248999999999999999999999987654
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.66 E-value=3.6e-17 Score=154.29 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=113.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhc-cCCCc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASK-GYSGP 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~l-e~~~~ 219 (486)
.++.||||+||++++||||||+|+|+|.|+++.+++++||++++ +..++.|| +.+ .+++..++. ..+.+
T Consensus 3 ~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T d1iru2_ 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (217)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 46789999999999999999999999999999999999999985 55666665 223 233444443 34455
Q ss_pred ccccccceeeEEE-e----------cCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-F----------ADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 220 ~aV~~GtTiIgI~-~----------kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
..+...+..++.. + ...++.+.|...+ .+.+++.++. ...+..+.|+|+......|++.+
T Consensus 83 ~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~~~~~l~~~D~~G~~-----~~~~~~a~G~g~~~a~~~Le~~~--- 154 (217)
T d1iru2_ 83 YSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA-----YEAPSLATGYGAYLAQPLLREVL--- 154 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE-----EECSEEECTTHHHHTHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHhccccCcccceEEEEEEcCCCcEEEEEecCcee-----EeeeEEeccCcHHHHHHHHHHHh---
Confidence 5555444444311 1 1234445664322 3334444433 34567788899988888877744
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+..+++ .+||++|+++|+..++.||..||+++++
T Consensus 155 ------~~~~~lt----------------~~ea~~l~~~al~~a~~rd~~sg~~i~i 189 (217)
T d1iru2_ 155 ------EKQPVLS----------------QTEARDLVERCMRVLYYRDARSYNRFQT 189 (217)
T ss_dssp ------TSCSCCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred ------cccCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 2233444 8999999999999999999999977653
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=7.1e-17 Score=150.84 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=118.8
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
..|||+||++++||||||||+|+|.|.++.+++++||++++ +..++.+| +.+..++..|+..++.+.++.
T Consensus 5 ~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T d1iruj_ 5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 84 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred eCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccchH
Confidence 36999999999999999999999999999999999999986 45555555 223456778888888777776
Q ss_pred ccceeeEEEe---------cCeEEEEEeCCCCc-CeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 224 TGTTIVGAIF---------ADGVVLGADTRATD-DTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 224 ~GtTiIgI~~---------kdGVVlAaDtr~t~-g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..+..++... ...++.|.|+.... ..+...... .+.....+.++++|+......|++.+
T Consensus 85 ~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g--~~~~~~~~~~~G~g~~~~~~~l~~~~--------- 153 (204)
T d1iruj_ 85 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG--CPMVTDDFVVSGTCAEQMYGMCESLW--------- 153 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTC--CEEECSSEEEEETTHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCC--ceeeecceEEechhHHHHHHHHHhcc---------
Confidence 6665554221 24577678865422 222222211 12234667888999988888887744
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
...++ .+||.+|+++|+..++.||..||++++++
T Consensus 154 --~~~ms----------------~~ea~~l~~~al~~a~~rd~~sg~~~~v~ 187 (204)
T d1iruj_ 154 --EPNMD----------------PDHLFETISQAMLNAVDRDAVSGMGVIVH 187 (204)
T ss_dssp --CSSCC----------------HHHHHHHHHHHHHHHGGGBTTSCSCEEEE
T ss_pred --ccCCC----------------HHHHHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 33343 88999999999999999999999876543
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=2.9e-17 Score=153.23 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=113.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++|+||||||||+|+|.|+++.+++++||++++ ++.++.|| +.+ +.++..|+..++.+.++..-+
T Consensus 1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (203)
T d1yarh1 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 80 (203)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 89999999999999999999999999999999999986 56666666 322 334566777777666666555
Q ss_pred eeeEEEe---------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF---------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~---------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++-.. ...++.+.|..+....+++.++. ...+..+.|+|+......|++.+ .+
T Consensus 81 ~~l~~~~~~~~~~p~~~~~lvaG~d~~p~l~~~d~~G~~-----~~~~~~a~G~g~~~~~~~L~~~~-----------~~ 144 (203)
T d1yarh1 81 TLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGS-----VEDIYASTGSGSPFVYGVLESQY-----------SE 144 (203)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEESSSEEEEEECTTCCE-----EEESEEEESTTHHHHHHHHHHHC-----------CT
T ss_pred HHHHHHHHhhccCCccceeEEEEEcCCCeeEecCCccce-----ecccccccCCCcHHHHHHHHHhc-----------cC
Confidence 5554211 12345556765444444444443 34568889999988888777633 23
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ .+||.+|+.+|+..++.+|..+|+++++
T Consensus 145 ~~s----------------~eea~~l~~~~l~~~~~~d~~~~~~v~v 175 (203)
T d1yarh1 145 KMT----------------VDEGVDLVIRAISAAKQRDSASGGMIDV 175 (203)
T ss_dssp TCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 343 8999999999999999999999987654
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Probab=99.63 E-value=1.5e-16 Score=149.91 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=112.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||||||+|+||||||||+|+|.|+++.+++++||++++ +..++.+| + .+..++.+|+..++.+..+...+
T Consensus 1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T d1q5qh_ 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (224)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence 89999999999999999999999999999999999986 55555555 2 22456778887777766665555
Q ss_pred eeeEEEec------------CeEEEEEeCCC-------CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 227 TIVGAIFA------------DGVVLGADTRA-------TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 227 TiIgI~~k------------dGVVlAaDtr~-------t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
..++-... ..++.+.|... ..+.+++.++. ..-..++++.|||+......|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~---~~~~~~~~a~GsG~~~a~~~Le~~~--- 154 (224)
T d1q5qh_ 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR---YEERAGYHAVGSGSLFAKSALKKIY--- 154 (224)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE---EECCSSEEEESTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcE---EEeccceeeecCccHHHHHHHHHhh---
Confidence 55542211 12333444211 22233333321 1123467889999999999888743
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
...|+ .+||.+|+++|+..++.||.+|||....+
T Consensus 155 --------~~~mt----------------~~ea~~l~~~al~~a~~rD~~SGg~~~~~ 188 (224)
T d1q5qh_ 155 --------SPDSD----------------EETALRAAIESLYDAADDDSATGGPDLTR 188 (224)
T ss_dssp --------CTTCC----------------HHHHHHHHHHHHHHHHHHCTTTCCCBTTT
T ss_pred --------cccCC----------------HHHHHHHHHHHHHHHHhhccccCCccccc
Confidence 34443 89999999999999999999999875544
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=3.5e-17 Score=152.30 Aligned_cols=156 Identities=12% Similarity=-0.024 Sum_probs=114.5
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| + .+..++.+|+.+++.+..+..-+
T Consensus 2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (198)
T d1rypk_ 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred eEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 79999999999999999999999999999999999986 66666666 2 22445777777777777666666
Q ss_pred eeeEE-Ee----------cCeEEEEEeCCC---CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 227 TIVGA-IF----------ADGVVLGADTRA---TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 227 TiIgI-~~----------kdGVVlAaDtr~---t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
..++- .+ ...++.|.|+.. ..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 82 ~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~-----~~~~~~a~G~gs~~~~~~Le~~~-------- 148 (198)
T d1rypk_ 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK-----VELPYGAHGYSGFYTFSLLDHHY-------- 148 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE-----EECSEEECTTHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccE-----EecceEEEeccchhhHHHHHhcc--------
Confidence 55541 11 123555688642 34445555443 23567778888877777777633
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 293 LNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 293 l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+++++++.+++.||..||+++++
T Consensus 149 ---~~~~~----------------~eea~~l~~~~l~~~~~~d~~s~~~~~v 181 (198)
T d1rypk_ 149 ---RPDMT----------------TEEGLDLLKLCVQELEKRMPMDFKGVIV 181 (198)
T ss_dssp ---CTTCC----------------HHHHHHHHHHHHHHHHHHCSBCCCCEEE
T ss_pred ---cccCC----------------HHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 33443 8999999999999999999999977653
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=9.4e-17 Score=154.34 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=119.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||||+|+|.|..+.+++++||++++ ++.++.+| +. +..+...|+..++.+.
T Consensus 26 ~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 105 (244)
T d1rypc_ 26 ESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDI 105 (244)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34689999999999999999999999999999999999999986 56666665 22 2345667777777666
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.+...+..++-.. ...+|.|.|... ..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~-----~~~~~~a~G~g~~~a~~~Le~~~- 179 (244)
T d1rypc_ 106 PVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY-----TGWKAISVGANTSAAQTLLQMDY- 179 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcE-----eeeeeeeccchhHHHHHHHHhcc-
Confidence 6655444443211 234666788542 35555566554 34577888999988888887744
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+.++ .+||.+|+++|+.+++.+|..+|+++++
T Consensus 180 ----------~~~ms----------------~eeai~l~~~al~~a~~~d~~~~~~iei 212 (244)
T d1rypc_ 180 ----------KDDMK----------------VDDAIELALKTLSKTTDSSALTYDRLEF 212 (244)
T ss_dssp ----------CTTCC----------------HHHHHHHHHHHHHHHCSSSSCCGGGEEE
T ss_pred ----------cCCCC----------------HHHHHHHHHHHHHHHHhccCCCCCcEEE
Confidence 33343 8999999999999999999999866543
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=6.8e-16 Score=143.50 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=117.1
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
...|||+|||+++||||||||+|.|.|.++.+++++||+++|++.++.+| ..+..++..|+.+++.+..+.
T Consensus 5 ~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T d1rypj_ 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE 84 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred ccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEcCCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 35799999999999999999999999999999999999999988777776 222345667777777776666
Q ss_pred ccceeeEEE-e--------cCeEEEEEeCCCC---cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 224 TGTTIVGAI-F--------ADGVVLGADTRAT---DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 224 ~GtTiIgI~-~--------kdGVVlAaDtr~t---~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
.....++-. + ...++.+.|.... ...+++.++.. -.....++++|+......|.+.+
T Consensus 85 ~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~----~~~~~~~~G~g~~~a~~~l~~~~------- 153 (204)
T d1rypj_ 85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCID----EAKDFIVSGTASDQLFGMCESLY------- 153 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEE----CCSSEEEEETTHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccc----cccCcEEeecchHHHHHHHHhcc-------
Confidence 666655421 1 1245556775432 23334444321 12456777899887777777633
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
...++ .+||++|+++|+..++.+|..+|++++++
T Consensus 154 ----~~~ms----------------~~ea~~l~~~al~~a~~~d~~sg~~~~v~ 187 (204)
T d1rypj_ 154 ----EPNLE----------------PEDLFETISQALLNAADRDALSGWGAVVY 187 (204)
T ss_dssp ----CSSCC----------------HHHHHHHHHHHHHHHHTTBTTSCSCEEEE
T ss_pred ----ccCCC----------------HHHHHHHHHHHHHHHHHhcCccCCeEEEE
Confidence 33443 88999999999999999999999876543
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=4.6e-16 Score=146.66 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=114.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCC-ccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSG-PTA 221 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~-~~a 221 (486)
..+|||+||++++||||||||+|+|.|.+|.+++++||++++ +..++.+| +. +..++.+|++.++. +..
T Consensus 6 ~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T d1ryp1_ 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCCCCCc
Confidence 579999999999999999999999999999999999999986 55555555 22 23456677665543 333
Q ss_pred ccccceeeEEE---------ecCeEEEEEeCCCC--cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI---------FADGVVLGADTRAT--DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 222 V~~GtTiIgI~---------~kdGVVlAaDtr~t--~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
+......+... +...++.+.|.... .+.+++.++. ...+..+.|+|+......|++.++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~-----~~~~~~a~G~g~~~a~~~Le~~~~~~~~~ 160 (222)
T d1ryp1_ 86 INSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSY-----EREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp HHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE-----EEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHHHHhhhhhhheeeeeEEEEeCCCCeEEEEECCCcEE-----EEeceEEEcccHHHHHHHHHHhhcccccc
Confidence 33333332211 11346666786543 4445555543 34577889999988888887744211100
Q ss_pred ------hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 ------LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ------~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
........+ +.+||.+|+++|+..++.||..||++++
T Consensus 161 ~~~~~~~~~~~~~~l----------------t~~ea~~l~~~al~~a~~rd~~sg~~v~ 203 (222)
T d1ryp1_ 161 EPGTNGKVKKPLKYL----------------SVEEVIKLVRDSFTSATERHIQVGDGLE 203 (222)
T ss_dssp CTTSTTCSBCCCCCC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred Ccccchhhhcccccc----------------cHHHHHHHHHHHHHHHHHhcccCCCcEE
Confidence 000000123 4899999999999999999999997654
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.55 E-value=3.3e-15 Score=138.60 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=111.7
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV 222 (486)
..+|||+|||+++||||||||+|+|.|..+.+++++||++++ +..++.+| + .+..++..|+..++.+..+
T Consensus 6 ~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (213)
T d1iru1_ 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCCchhH
Confidence 468999999999999999999999999999999999999987 45555555 2 2234566666666655554
Q ss_pred cccceeeEEEe---------cCeEEEEEeCCCCcCe--eeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 223 KTGTTIVGAIF---------ADGVVLGADTRATDDT--IVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 223 ~~GtTiIgI~~---------kdGVVlAaDtr~t~g~--li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
...+..++... ...++.+.|....... +++.+.. ...+..+.|+|+......|+..+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~-----~~~~~~a~G~g~~~a~~~l~~~~~~~~~-- 158 (213)
T d1iru1_ 86 GAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY-----QRDSFKAGGSASAMLQPLLDNQVGFKNM-- 158 (213)
T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE-----EEESEEEEETTHHHHHHHHHHHTTCCSC--
T ss_pred HHHHHHHHHHHHHHHhhhcccccceEEEecCCCcEEEecCCccee-----eecCeeeecCccHHHHHHHHHhhcccch--
Confidence 44444333111 1235555665443222 2222222 2357888999999988888874321100
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.-.+...+ +.+||.+++++++.++..+|..+|++++
T Consensus 159 ~~~~~~~~----------------s~~ea~~~~~~~l~~~~~~d~~sg~~~~ 194 (213)
T d1iru1_ 159 QNVEHVPL----------------SLDRAMRLVKDVFISAAERDVYTGDALR 194 (213)
T ss_dssp SSCCCCCC----------------CHHHHHHHHHHHHHHHHHHBTTSCSEEE
T ss_pred hcccccCC----------------CHHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 00011223 3899999999999999999999996654
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.55 E-value=6.4e-16 Score=140.97 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=106.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+|||+++||||||+|+|+|.|.++.+++++||++++ ++.++.+| ..+..++..|+..++.+..+...+
T Consensus 2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T d1iruk_ 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (199)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred eEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHHH
Confidence 89999999999999999999999999999999999986 55555555 122334666666666555444433
Q ss_pred eeeEEEe-----------cCeEEEEEeCCCCc--CeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGAIF-----------ADGVVLGADTRATD--DTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI~~-----------kdGVVlAaDtr~t~--g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..++... ...++.+.|..... ..+.+.+.. ...+..+.++|+......|.+.++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~-----~~~~~~a~G~gs~~a~~~l~~~~~-------- 148 (199)
T d1iruk_ 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL-----AKAPFAAHGYGAFLTLSILDRYYT-------- 148 (199)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE-----EECSEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceE-----EeeeeeeecccchhhhHHHHHhcc--------
Confidence 3332110 11344457764332 222222222 346788899998887777776442
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..+ +.+||.+++++|+.++..+|.+||+++++
T Consensus 149 ---~~~----------------~~~ea~~l~~~al~~~~~~d~~sg~~~~v 180 (199)
T d1iruk_ 149 ---PTI----------------SRERAVELLRKCLEELQKRFILNLPTFSV 180 (199)
T ss_dssp ---TTC----------------CHHHHHHHHHHHHHHHHHTBCBCCCCEEE
T ss_pred ---CCC----------------CHHHHHHHHHHHHHHHHHhcCCcCCceEE
Confidence 233 38899999999999999999999977553
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=7.6e-16 Score=142.76 Aligned_cols=156 Identities=24% Similarity=0.251 Sum_probs=107.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++|+||||||||+|.|.|.++.+++++||++++ ++.++.+| +. +..++..|+..++.+..+..-+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T d1j2qh_ 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence 89999999999999999999999999999999999986 56666666 22 2334566666666555554444
Q ss_pred eeeEEE--------e-cCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI--------F-ADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~--------~-kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-. + ...++.+.|...+ ...+++.++. +. ..+..+.|+|+......|++.+ .
T Consensus 81 ~~~~~~~~~~~~~p~~~~~lvaG~d~~~~~l~~~d~~G~~--~~--~~~~~a~G~g~~~~~~~Le~~~-----------~ 145 (202)
T d1j2qh_ 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGA--IE--EKDIVATGSGSLTAYGVLEDRF-----------T 145 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCE--EE--ESSEEEESTTHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHhhhcccceeeEEEEEEEcCCCceEEEEeCCCCe--Ee--ecceEEccCChHHHHHHHHhhc-----------C
Confidence 433211 1 1234555675432 3333333332 11 2457788899888877776633 3
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+.+|+..++.+|..+|++++
T Consensus 146 ~~ms----------------~~ea~~l~~~al~~~~~~d~~~g~~v~ 176 (202)
T d1j2qh_ 146 PEIG----------------VDEAVELAVRAIYSAMKRDSASGDGID 176 (202)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHTTCTTSCSCEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 3443 899999999999999999999986654
|
| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=4.1e-15 Score=143.28 Aligned_cols=162 Identities=15% Similarity=0.059 Sum_probs=118.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||||+|++.|..+.+++.+||++++ ++.++.+| +.+ ..++..|+..++.+.
T Consensus 25 kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 104 (250)
T d1iruc_ 25 EAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 104 (250)
T ss_dssp HHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHHHHcCCCc
Confidence 34689999999999999999999999999999999999999986 66666666 222 334667777777666
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++..-+..++... ...++.+.|.. +..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 105 ~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~-----~~~~~~a~G~gs~~a~~~Le~~y- 178 (250)
T d1iruc_ 105 PCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY-----GGWKATCIGNNSAAAVSMLKQDY- 178 (250)
T ss_dssp CHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE-----EECSEEEESTTTTHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccE-----eeeeEEEeCcChHHHHHHHHhhc-
Confidence 6655444443111 12356667864 235555666554 34678889999998888876622
Q ss_pred HHHHHhHhhcCC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGK-IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~-~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.. +++ .+||.+|+.+|+..++.+|..+|.++++
T Consensus 179 ----------~~~~ms----------------~eeai~la~~al~~~~~~d~~~~~~iei 212 (250)
T d1iruc_ 179 ----------KEGEMT----------------LKSALALAIKVLNKTMDVSKLSAEKVEI 212 (250)
T ss_dssp ----------CTTCCC----------------HHHHHHHHHHHHHHSSSCTTCCSTTCEE
T ss_pred ----------ccCCCC----------------HHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence 22 343 8899999999999999999999877653
|
| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=1.4e-15 Score=145.12 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=112.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|. +.+++++||++++ ++.++.+| +.+ .+++..|+..++.+.
T Consensus 22 kav~~G~t~vgik~~dgVvlaad~~~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 100 (234)
T d1irue_ 22 EAIKLGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETM 100 (234)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECCCCCTT-BCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEecCccCCC-cccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHHhhCCCC
Confidence 446799999999999999999999999875 5689999999986 67777776 222 345677877777777
Q ss_pred cccccceeeEEEe------------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF------------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 221 aV~~GtTiIgI~~------------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
.+...+..++... ...++.|.|... ..+.+++.++. ...+..+.|+|+......|+
T Consensus 101 ~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~gp~Ly~idp~G~~-----~~~~~~a~G~gs~~~~~~Le 175 (234)
T d1irue_ 101 TVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF-----VQCDARAIGSASEGAQSSLQ 175 (234)
T ss_dssp CHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCCCEEEEEecCccc-----ceeeeEEeCCchHHHHHHHH
Confidence 6655555443211 124566688653 34445555554 23567788999988888887
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.+ .+.++ .+||.+++.+|+...+.+| .++++|++
T Consensus 176 ~~~-----------~~~~~----------------~eeai~~a~~al~~~~~~~-~~~~~iei 210 (234)
T d1irue_ 176 ELY-----------HKSMT----------------LKEAIKSSLIILKQVMEEK-LNATNIEL 210 (234)
T ss_dssp HHC-----------CTTCC----------------HHHHHHHHHHHHHHHCSSC-CCTTSEEE
T ss_pred Hhh-----------ccCCC----------------HHHHHHHHHHHHHHHHhcc-CCCCCEEE
Confidence 743 23333 8899999999998866555 56666653
|
| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.52 E-value=2e-15 Score=142.71 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=112.5
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|++ +.++.+++.+||++++ ++.++.+| + .+..++..|+..++.+.
T Consensus 17 ~av~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 95 (221)
T d1yara1 17 EAVKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLV 95 (221)
T ss_dssp HHHTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHHHHcCCcc
Confidence 446799999999999999999999988 7778899999999986 66666666 2 22445677777777666
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+...+..++.. +...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.+
T Consensus 96 ~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~gp~Ly~id~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~-- 168 (221)
T d1yara1 96 NIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTIN-----EYKATAIGSGKDAVVSFLEREY-- 168 (221)
T ss_dssp CHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEE-----EBSEEEESTTHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCCCeEEEEcCCccEE-----EeeEEEECCchHHHHHHHHHHh--
Confidence 655544444311 1234666788653 345555555552 3577888999988888877633
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.+.++ .+||.+|+.+|+..++.+|. ++++++
T Consensus 169 ---------~~~ms----------------~~ea~~la~~~l~~~~~~~~-~~~~~e 199 (221)
T d1yara1 169 ---------KENLP----------------EKEAVTLGIKALKSSLEEGE-ELKAPE 199 (221)
T ss_dssp ---------CTTCC----------------HHHHHHHHHHHHHHTSCSSC-CCCCCE
T ss_pred ---------hcccc----------------HHHHHHHHHHHHHHHHhccC-CCCCcE
Confidence 33443 88999999999999887765 444544
|
| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=2.1e-15 Score=145.25 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=107.7
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHh-HhccCCCcc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFL-ASKGYSGPT 220 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L-~~le~~~~~ 220 (486)
++++|||+||++++||||||||+|++.+.+ .+++.+||++++ ++.++.+| +.+.+ +..+ |...++.+.
T Consensus 27 av~~G~tvvgi~~~dgVvlaad~r~~~~~~-~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~~~~~ 105 (250)
T d1rypb_ 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLA-MSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYP 105 (250)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECCCSCSSB-CGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEecccCCccc-cccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 367899999999999999999999997765 578899999986 66666666 23322 2222 344445444
Q ss_pred cccccceeeEE-------------EecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGA-------------IFADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI-------------~~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++..-+..++- .+...++.|.|.. +..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 106 ~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~-----~~~~~~a~G~gs~~a~~~Le~~~- 179 (250)
T d1rypb_ 106 PTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY-----FPWKATAIGKGSVAAKTFLEKRW- 179 (250)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEE-----EEeeEEecCcchHHHHHHHHHhc-
Confidence 44333332221 0123566678853 335555555554 33567889999988888888744
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+.+|+..++.+|. ||+++++
T Consensus 180 ----------~~~ms----------------~eea~~la~~al~~~~~~d~-s~~~iev 211 (250)
T d1rypb_ 180 ----------NDELE----------------LEDAIHIALLTLKESVEGEF-NGDTIEL 211 (250)
T ss_dssp ----------CTTCC----------------HHHHHHHHHHHHHHHCCSCC-STTTEEE
T ss_pred ----------ccCCC----------------HHHHHHHHHHHHHHHhhccC-CCCCEEE
Confidence 34443 89999999999999999985 6766553
|
| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.2e-14 Score=139.55 Aligned_cols=154 Identities=17% Similarity=0.106 Sum_probs=113.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||||+|++.|.++ .++++||++++ ++.++.+| +.+ ..++..|+..++.+..
T Consensus 27 av~~G~t~Igik~~dgVvlaad~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 105 (243)
T d1j2pa_ 27 AVKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPIT 105 (243)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECCCSCTTBC-GGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCCEEEEEECCEEEEEEecCccccCcc-ccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 4679999999999999999999999999865 57899999986 66666666 222 3456777778887776
Q ss_pred ccccceeeEEEe-------------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAIF-------------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 222 V~~GtTiIgI~~-------------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
+...+..++... ...++.+.|..+..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 106 ~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~~p~Ly~~Dp~G~~-----~~~~~~a~G~g~~~a~~~Le~~y---- 176 (243)
T d1j2pa_ 106 VKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGAL-----LEYKATAIGMGRMAVTEFFEKEY---- 176 (243)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSSEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhhccCCccceeEEEEEecCCceEEEEeccCce-----eeeeEEEeCCCcHHHHHHHHhhc----
Confidence 666666554211 12455567776555566666654 33577888999988888888743
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCC
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS 338 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gS 338 (486)
...++ .+||.+|+.+|+..++.+|..+
T Consensus 177 -------~~~ms----------------~eeai~la~~~l~~~~~~d~~~ 203 (243)
T d1j2pa_ 177 -------RDDLS----------------FDDAMVLGLVAMGLSIESELVP 203 (243)
T ss_dssp -------CTTCC----------------HHHHHHHHHHHHHHHHTSCCCG
T ss_pred -------ccCCC----------------HHHHHHHHHHHHHHHHhcccCC
Confidence 33443 8999999999999999988654
|
| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=7.8e-15 Score=140.47 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=109.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||+|+|+|.| ++..++++||++++ ++.++.+| +.+ ..++..|+..++.+..
T Consensus 22 a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1rype_ 22 AIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDIN 100 (242)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4578999999999999999999999988 67788999999986 66666666 222 3456677777776666
Q ss_pred ccccceeeEEE-------------------ecCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------------FADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 222 V~~GtTiIgI~-------------------~kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
+...+..++-. +...+|.|.|... ..+.+++.++. ...+..+.|+|+......|
T Consensus 101 ~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~-----~~~~~~a~G~gs~~~~~~L 175 (242)
T d1rype_ 101 VESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF-----YRYNAKAIGSGSEGAQAEL 175 (242)
T ss_dssp HHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCce-----eccceeecccchHHHHHHH
Confidence 55444443311 0124566677543 35555566554 2356788899998888887
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
++.+ ...++ .+||.+|+.+++.++..+|..+|
T Consensus 176 e~~~-----------~~~ms----------------~~ea~~la~~~l~~~~~~~~~~~ 207 (242)
T d1rype_ 176 LNEW-----------HSSLT----------------LKEAELLVLKILKQVMEEKLDEN 207 (242)
T ss_dssp HHHC-----------CTTCC----------------HHHHHHHHHHHHHHHCSSCCCTT
T ss_pred HHhc-----------cCCCC----------------HHHHHHHHHHHHHHHHhccCCCC
Confidence 7633 23343 88999999999999888776554
|
| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=8.6e-15 Score=138.91 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=109.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++|+||||||||+|++.|.+ .+++.+||+++| +..++.+| +. +..+...|+..++.+.
T Consensus 26 kav~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (233)
T d1irub_ 26 AAVAGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI 104 (233)
T ss_dssp HHHHTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4467999999999999999999999999985 589999999986 66666666 22 2445677777777666
Q ss_pred cccccceeeEEEe------------cCeEEEEE-eCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF------------ADGVVLGA-DTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~------------kdGVVlAa-Dtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+......++-.. ...++++. |... ..+.+.+.++. ...+..+.|+|+......|++.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~~~ly~id~~G~~-----~~~~~~a~G~gs~~~~~~Le~~~-- 177 (233)
T d1irub_ 105 PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY-----FAWKATAMGKNYVNGKTFLEKRY-- 177 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCCceEEEEcCCcce-----EeccceecCCcHHHHHHHHHhhc--
Confidence 6655555443111 11244444 4333 34445555544 23567788999988877777633
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.+.++ .+||.+|+.+++...+.+|.. +++++
T Consensus 178 ---------~~~ms----------------~eea~~l~~~~L~~~~~~d~~-~~~ve 208 (233)
T d1irub_ 178 ---------NEDLE----------------LEDAIHTAILTLKESFEGQMT-EDNIE 208 (233)
T ss_dssp ---------CTTCC----------------HHHHHHHHHHHHHTTCCSCCC-SSSEE
T ss_pred ---------ccCcc----------------HHHHHHHHHHHHHHHHhccCC-CCcEE
Confidence 33443 899999999999999988874 44443
|
| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=8.3e-14 Score=133.72 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=109.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++|+||||||||+|+|.|.++.++ ..||++++ ++.++.+| +.+ ..++..|+..++.+.
T Consensus 25 kav~~G~t~igik~~dgVvlaad~~~~~~~~~~~~-~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 103 (244)
T d1rypg_ 25 KAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 103 (244)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEecccCCCCccccc-cceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999999999999888655 57999986 66666666 323 345667777777766
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+...+..++-. +...++.+.|...+ .+.+++.++. ...+..+.|+|+......|++...
T Consensus 104 ~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~gp~Ly~idp~Gs~-----~~~~~~a~G~gs~~~~~~Lek~~~- 177 (244)
T d1rypg_ 104 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY-----WGYKGAATGKGRQSAKAELEKLVD- 177 (244)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCCCEEEEEcCCccE-----EecCeEecCCccHHHHHHHHHHHh-
Confidence 555554444311 12346677886543 3444555543 346778889999877777765221
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
.+..+|+ .+||.+|+.+++..++.++..++
T Consensus 178 -------~~~~~mt----------------~eeai~la~~~L~~~~~~~~~~~ 207 (244)
T d1rypg_ 178 -------HHPEGLS----------------AREAVKQAAKIIYLAHEDNKEKD 207 (244)
T ss_dssp -------HCTTCCC----------------HHHHHHHHHHHHHHHGGGGTTSC
T ss_pred -------hCCCCCC----------------HHHHHHHHHHHHHHHHhcccCCC
Confidence 2333444 89999999999998876666654
|
| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=1.9e-14 Score=138.47 Aligned_cols=155 Identities=16% Similarity=0.038 Sum_probs=110.7
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||||+|++.+.++ +++.+||++++ ++.++.+| +.+ ..++.+|+..++.+.+
T Consensus 29 av~~G~t~VGik~~dgVvlaad~~~~~~~~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g~~i~ 107 (245)
T d1irug_ 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIP 107 (245)
T ss_dssp HHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCcEEEEEeCCEEEEEEeccccccccc-cCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3679999999999999999999999987765 68889999986 77777776 222 4457788887887777
Q ss_pred ccccceeeEEE------------e-cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI------------F-ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~------------~-kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+...+..++-. + ...++.+.|.. +..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 108 ~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~-----~~~~~~a~G~gs~~a~~~Le~~~~- 181 (245)
T d1irug_ 108 LKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS-----YGYWGCAIGKARQAAKTEIEKLQM- 181 (245)
T ss_dssp HHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceE-----EeeeEEEECCccHHHHHHHHhhcC-
Confidence 66655555421 1 12455567854 235556666654 346778899999887777776332
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
.++ +.+||.+|+.+++..++.++..++
T Consensus 182 ----------~dm----------------t~eea~~l~~~~l~~~~~~~~~~~ 208 (245)
T d1irug_ 182 ----------KEM----------------TCRDIVKEVAKIIYIVHDEVKDKA 208 (245)
T ss_dssp ----------GGC----------------CHHHHHHHHHHHHHHHSCSSSSCC
T ss_pred ----------CCC----------------CHHHHHHHHHHHHHHHHhhccCCC
Confidence 233 388999999999998876555544
|
| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=2.3e-13 Score=130.21 Aligned_cols=162 Identities=8% Similarity=-0.016 Sum_probs=116.4
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~ 223 (486)
++|||+||++++||||||||+|++. .++.+++++||++++ ++.++.+| +.+ ..++..|+..++.+..+.
T Consensus 28 ~~g~T~igik~~dgVvlaad~r~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (243)
T d1rypa_ 28 QTNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCD 106 (243)
T ss_dssp TTCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred ccCceEEEEEcCCEEEEEEeccccc-cccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4699999999999999999999886 678889999999986 66666666 222 345667777777777666
Q ss_pred ccceeeEEE------------e-cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 224 TGTTIVGAI------------F-ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 224 ~GtTiIgI~------------~-kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
..+..++-. + ...++.|.|... ..+.+++.++. ...+..+.|+|+......|++.++..+
T Consensus 107 ~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~-----~~~~~~a~G~gs~~~~~~Le~~~~~~~ 181 (243)
T d1rypa_ 107 VLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY-----VGYKATATGPKQQEITTNLENHFKKSK 181 (243)
T ss_dssp HHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEE-----EecceEEeCccHHHHHHHHHHHhhccc
Confidence 665555411 0 124666788543 35556666655 345778899999999999998887655
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
... -..+ +.+||.+++.+++..++.+|. ++.++
T Consensus 182 ~~~----~~~~----------------s~eeav~la~~~l~~~~~~d~-~~~~i 214 (243)
T d1rypa_ 182 IDH----INEE----------------SWEKVVEFAITHMIDALGTEF-SKNDL 214 (243)
T ss_dssp SSS----CCCS----------------SHHHHHHHHHHHHHHHHTCCC-CTTSE
T ss_pred ccc----cccc----------------cHHHHHHHHHHHHHHHhhccC-CCCcE
Confidence 311 1112 378999999999999999886 55554
|
| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=3.7e-13 Score=128.60 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=112.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||||+|++++..+. .+||++++ ++.++.+| +.+ ..++..|+..++.+.
T Consensus 24 kav~~G~t~vgik~~dgVvlaad~~~~~~~~~~---~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 100 (238)
T d1iruf_ 24 EAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL 100 (238)
T ss_dssp HHHHHSCCEEEEECSSEEEEEEECCCSSTTBCC---CCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCCEEEEEeCCEEEEEEecccccCCCCc---cceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 346789999999999999999999999997653 46999986 67677776 222 345667777777777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+...+..++... ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++.
T Consensus 101 ~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~gp~Ly~~D~~G~~-----~~~~~~a~G~g~~~~~~~Lek~~~~ 175 (238)
T d1iruf_ 101 PVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANY-----FDCRAMSIGARSQSARTYLERHMSE 175 (238)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCE-----EEESEEEESTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCCceEEEEcCCCCE-----EeeeeEEECCCchhhHHHHHhhccc
Confidence 6666655553110 124565678643 35556666654 3356788999999998888886655
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccC-CCCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG-SGSNI 342 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~g-SG~nV 342 (486)
.+. .+.+||.+|+.+|+..++.+|.. ++.+|
T Consensus 176 ~~~-------------------------~~~~eav~lai~al~~~~~~~~~~~~~~i 207 (238)
T d1iruf_ 176 FME-------------------------CNLNELVKHGLRALRETLPAEQDLTTKNV 207 (238)
T ss_dssp HTT-------------------------CCHHHHHHHHHHHHHTTSCTTCCCCTTTE
T ss_pred ccC-------------------------CCHHHHHHHHHHHHHHHHhhcccCCCCcE
Confidence 442 13789999999999988876654 55444
|
| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=2.6e-13 Score=129.98 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=111.4
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||+|+|++ |.++.+++++||++++ ++.++.+| +. +..++..|+..++.+.+
T Consensus 24 av~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 102 (243)
T d1irud_ 24 AVKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVT 102 (243)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 36799999999999999999999966 9999999999999986 67777776 22 24457788888888777
Q ss_pred ccccceeeEEEe-------------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAIF-------------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~~-------------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+..-+..++-.. ...+++|.|.. +..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 103 v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~-----~~~~~~a~G~gs~~a~~~Lek~~-- 175 (243)
T d1irud_ 103 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY-----HAWKANAIGRGAKSVREFLEKNY-- 175 (243)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEE-----EeccEEEECCChHHHHHHHHHhc--
Confidence 766666665221 13566678854 335556666654 34567889999988888877633
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...+.. +.+++.+++.+|+...+ ..+|.+|++
T Consensus 176 ---------~~~~~~--------------~~~~~i~~ai~~l~~~~---~~~~~~vei 207 (243)
T d1irud_ 176 ---------TDEAIE--------------TDDLTIKLVIKALLEVV---QSGGKNIEL 207 (243)
T ss_dssp ---------CSSTTC--------------SHHHHHHHHHHHHHTTS---CTTSTTCCE
T ss_pred ---------ccCCCc--------------cHHHHHHHHHHHHHHHh---cCCCCcEEE
Confidence 222211 25677888877777654 334555543
|
| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.1e-13 Score=132.37 Aligned_cols=155 Identities=19% Similarity=0.110 Sum_probs=109.6
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
++++.|||+||++++||||||+|+|++.|.++.+++++||++++ ++.++.+| + .+.+++..|+..++.+.
T Consensus 23 kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 102 (241)
T d1rypd_ 23 EAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPV 102 (241)
T ss_dssp HHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34678999999999999999999999999999999999999986 66677776 2 22445777777777777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC---CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA---TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~---t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
.+...+..++-.. ...++.+.|.+. ..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 103 ~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~-----~~~~~~a~G~gs~~~~~~Le~~~ 177 (241)
T d1rypd_ 103 TVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-----SSWSAQTIGRNSKTVREFLEKNY 177 (241)
T ss_dssp CHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEE-----EeeCeEEECcCHHHHHHHHHHhh
Confidence 6666655554221 123555677542 24445555543 34567888999988888877633
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFN 334 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~n 334 (486)
+.+ ...+ +.+||.+++.+|+...+.+
T Consensus 178 ~~~--------~~~~----------------t~~e~i~lal~al~~~~~~ 203 (241)
T d1rypd_ 178 DRK--------EPPA----------------TVEECVKLTVRSLLEVVQT 203 (241)
T ss_dssp CTT--------SCCC----------------SHHHHHHHHHHHHHHHHCS
T ss_pred hcc--------cCCC----------------CHHHHHHHHHHHHHHHhcC
Confidence 210 1223 3788999999999887643
|
| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=7.2e-13 Score=126.13 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=116.5
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|+|+||++++||||||||+|.+.+. ..+.+||+.++ ++.++.+| + .++.++..|+..++.+.
T Consensus 26 kav~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 102 (233)
T d1rypf_ 26 EAIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKL 102 (233)
T ss_dssp HHHHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcCCCEEEEEECCeEEEEEeccccccC---CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhhhhcCCCC
Confidence 346789999999999999999999999885 35678999985 77777777 2 22445777888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+...+..++-.. ...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.+..
T Consensus 103 ~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g~~Ly~idp~G~~~-----~~~~~aiG~gs~~a~~~Le~~~~~ 177 (233)
T d1rypf_ 103 AVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVT-----ELYGTAIGARSQGAKTYLERTLDT 177 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEE-----EESEEEESTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCCCEEEEEcccccee-----cccEEEecCchHHHHHHHHHHHhh
Confidence 7776666664111 235666788654 344555555542 345677899998888888764432
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
. +..+++ .+||.+|+.+|+..++.+|..+|.+++
T Consensus 178 ~-------~~~dms----------------~eeai~l~~~~l~~~~~~d~~~~~~ie 211 (233)
T d1rypf_ 178 F-------IKIDGN----------------PDELIKAGVEAISQSLRDESLTVDNLS 211 (233)
T ss_dssp H-------TTCCSC----------------HHHHHHHHHHHHTTSCCSSCCCTTTEE
T ss_pred c-------cccCCC----------------HHHHHHHHHHHHHHHHhccCCCCCeEE
Confidence 2 223343 889999999999999999998887764
|
| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=1.2e-12 Score=125.47 Aligned_cols=157 Identities=12% Similarity=-0.001 Sum_probs=109.4
Q ss_pred ccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccc
Q psy10990 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKT 224 (486)
Q Consensus 155 tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~ 224 (486)
.|||+||++++||||||||+|++.+.++ +++.+||++++ ++.++.+| +.+ ..++..|+..++.+..+..
T Consensus 34 gg~t~igIk~~dgVVlaad~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~ 112 (244)
T d1irua_ 34 GGLTSVAVRGKDCAVIVTQKKVPDKLLD-SSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 112 (244)
T ss_dssp TCCEEEEEECSSEEEEEEECCCCCSSBC-GGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCccEEEEEcCCEEEEEEeccccccccc-CCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCchH
Confidence 4789999999999999999999865655 67899999986 66777766 223 3456677777777776655
Q ss_pred cceeeEEE-------------ecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 225 GTTIVGAI-------------FADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 225 GtTiIgI~-------------~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
-+..++-. +...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.+
T Consensus 113 la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~-----~~~~~a~G~gs~~~~~~Le~~~----- 182 (244)
T d1irua_ 113 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC-----GFKATAAGVKQTESTSFLEKKV----- 182 (244)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEE-----EBSEEEEETTHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEE-----ecceEeccCchhHHHHHHHhcc-----
Confidence 54444311 113466668864 2355566666552 3567778999988888777633
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 290 LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 290 ~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
....++ +.+||.+|+.+|+..++.+|..+ ++++
T Consensus 183 ----~~~~d~----------------t~eeai~l~~~~l~~~~~~d~~~-~~ie 215 (244)
T d1irua_ 183 ----KKKFDW----------------TFEQTVETAITCLSTVLSIDFKP-SEIE 215 (244)
T ss_dssp ----TSCCCC----------------CHHHHHHHHHHHHHHHTTCCCCT-TSEE
T ss_pred ----ccccCC----------------CHHHHHHHHHHHHHHHHhcCCCC-CcEE
Confidence 112233 38899999999999999988754 3444
|
| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Probab=99.29 E-value=6.7e-13 Score=126.11 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=88.3
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCc-
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGP- 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~- 219 (486)
+++++|||+||++|+||||||+|+|+|+ .+||+++| ++.++.+| +.+.+ ++..|+..++..
T Consensus 14 ~av~~GtT~vgi~~~~GVvlaad~r~~s--------~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 85 (227)
T d1q5qa_ 14 KGIARGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRD 85 (227)
T ss_dssp HHHHTSCCEEEEECSSEEEEEECCSCSS--------SCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHhcCCCEEEEEECCEEEEEEccCCCC--------cceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4468999999999999999999999765 57999986 66666666 33333 355666666632
Q ss_pred ccccccceeeE-E---E--------ecCeEEEEEeCCC-----CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 220 TARKTGTTIVG-A---I--------FADGVVLGADTRA-----TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 220 ~aV~~GtTiIg-I---~--------~kdGVVlAaDtr~-----t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
.++..-+..++ + . +...++.++|... ..+.+++.++... .....++++|+......|.+
T Consensus 86 ~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~----~~~~~~~g~~s~~~~~~Le~ 161 (227)
T d1q5qa_ 86 VTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVD----EQHFVVMGGTTEPIATAMRE 161 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEE----ESSEEEESSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceee----ecccccCCCchHHHHHHHHH
Confidence 23221111111 1 0 0123555677532 2344555554311 13344455556566666666
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 283 ~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
.+ .++|+ .+||.+|+.+|+.+++.+|..++
T Consensus 162 ~y-----------~~~ms----------------~eea~~la~~aL~~a~~~d~~~~ 191 (227)
T d1q5qa_ 162 SY-----------RADLD----------------LEAAVGIAVNALRQGGAGEGEKR 191 (227)
T ss_dssp HC-----------CTTCC----------------HHHHHHHHHHHHTTCC-------
T ss_pred hc-----------cCCCC----------------HHHHHHHHHHHHHHHhhcccccC
Confidence 33 34444 89999999999999998887654
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Probab=96.34 E-value=0.00092 Score=58.86 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=47.3
Q ss_pred CeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 264 ~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+.++++|||+..+...|.+.++..+. ++||++|+++|+.+|..+|.++|++|.
T Consensus 123 ~~~~a~GSGs~~A~g~l~~~~~~~~s---------------------------~~eA~~l~~~Al~~A~e~dvyT~~~~~ 175 (180)
T d2z3ba1 123 DGILAIGSGGNYALAAGRALKKHAGE---------------------------SMSASEIARAALETAGEICVYTNDQII 175 (180)
T ss_dssp SSEEEESTTHHHHHHHHHHHHHHHGG---------------------------GCCHHHHHHHHHHHHHHHCTTCCSCCE
T ss_pred ccEEEEcCchHHHHHHHHHHhhcCCC---------------------------ccCHHHHHHHHHHHHHhhcEEcCCcEE
Confidence 45788999999999999998876554 789999999999999999999999875
Q ss_pred c
Q psy10990 344 L 344 (486)
Q Consensus 344 l 344 (486)
+
T Consensus 176 ~ 176 (180)
T d2z3ba1 176 L 176 (180)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Probab=96.13 E-value=0.0013 Score=57.22 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=34.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM 262 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I 262 (486)
||+||++++||||+|+|+|.+.+.++.+.+.+||+++
T Consensus 1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i 37 (173)
T d1g3ka_ 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRL 37 (173)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEE
T ss_pred CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEe
Confidence 6899999999999999999999999999999999875
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.0027 Score=54.98 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=31.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEE
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIH 260 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~ 260 (486)
||+||+++++|||+|+|+|.+.+.++.+.+.+|++
T Consensus 1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~ 35 (171)
T d1m4ya_ 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVR 35 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEE
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEE
Confidence 68999999999999999999999999888887754
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