Psyllid ID: psy10995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MTDDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALEKGDTPTPPSGNDSPESATNRQIRESLYILLIVLFAVSTLFAFYACRQ
Secondary Structure (PSIPRED)
ccccccccccEEccccEEEccccEEccccccEEEccccEEEEEccccccccccccccccccccccccccccccccccEEcccccEEEccccEEcccccEEEEEcccEEEEEccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEcccEEEEcccEEcccccEEEEEccccEEEEccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccEEcccccccccccEEEEEcccEEEEEccccccccccccEEccccccccccccccccccccccccccccEEEcccccccccccEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtddgcitcecqdedgvwrddseiwrdgcrechcidgremctliacptlscqhpipanstqccpycpdatssgheAAVCMDFHgelklegqhwtlnpctdctcregkvlcysqqcpaaacsnprppepgtccprcagadeitalvvedplrkestpslspsdleipriGDEYLSCLlengtllhvgdtyfadpctnctclhggqkkctaSMCERkalekgdtptppsgndspesatnrQIRESLYILLIVLFAVSTLFAFYACRQ
Flexible Loop (DISEMBL)
mtddgcitcecqdedgvwrddseiWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVvedplrkestpslspsdleiPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALekgdtptppsgndspesatNRQIRESLYILLIVLFAVSTLFAFYACRQ
Low Complexity Region (SEG)
MTDDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALEKGDTPTPPSGNDSPESATNRQIRESLYILLIVLFAVSTLFAFYACRQ
Disordered region (IsUnstruct)
****GCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAAC*********TCCPRCAGADEITALVV********************RIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTA*******************************RESLYILLIVLFAVSTLFAFYAC**
Disordered Region (DISOPRED)
MTDDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALE***********DSPESATNRQIRESLYILLIVLFAVSTLFAFYACR*
Disordered Region (DISEMBL)
MTDDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPL*********PSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERK*********************NRQIRESLYILLIVLFAVSTLFAFYACRQ
Disordered Region (DISPRO)
**DDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALEKGDTPTPPSGNDSPESATNRQIRESLYILLIVLFAVSTLFAFYACRQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDDGCITCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALEKGDTPTPPSGNDSPESATNRQIRESLYILLIVLFAVSTLFAFYACRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q7T3Q2	1027	Cysteine-rich motor neuro	yes	N/A	0.728	0.187	0.319	1e-24
Q8AWW5	1048	Cysteine-rich motor neuro	yes	N/A	0.705	0.178	0.348	1e-24
Q9NZV1	1036	Cysteine-rich motor neuro	yes	N/A	0.705	0.180	0.339	2e-23
Q9JLL0	1037	Cysteine-rich motor neuro	yes	N/A	0.705	0.180	0.334	3e-22
Q9IBG7	2327	Kielin/chordin-like prote	N/A	N/A	0.369	0.042	0.407	1e-11
Q6ZWJ8	1503	Kielin/chordin-like prote	no	N/A	0.339	0.059	0.364	1e-08
Q3U492	1550	Kielin/chordin-like prote	no	N/A	0.373	0.063	0.4	2e-08
Q62919	810	Protein kinase C-binding	no	N/A	0.384	0.125	0.336	7e-08
Q92832	810	Protein kinase C-binding	no	N/A	0.513	0.167	0.326	1e-07
Q2VWQ2	810	Protein kinase C-binding	no	N/A	0.384	0.125	0.327	2e-07

>sp|Q7T3Q2|CRIM1_DANRE Cysteine-rich motor neuron 1 protein OS=Danio rerio GN=crim1 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 48/241 (19%)

Query: 5   GCITCECQDE-----------------DGVWRDDSEIWRDGCRECHCIDGREMCTLIACP 47
           GC+ C+C+D+                 DG   ++ + W DGCR+C+C  GREMC LI+CP
Sbjct: 580 GCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGREMCALISCP 639

Query: 48  TLSCQHPIPANSTQCCPYCPDATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTC 103
              C +P       CCP CP+ +SS      EA+VC+   GE  +EG+ W ++ CT CTC
Sbjct: 640 VPPCDNPT-IRPGHCCPTCPEESSSHKPELSEASVCLAPGGEYFVEGETWNIDSCTQCTC 698

Query: 104 REGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDL 163
             G+VLC ++ CP   C +P   +  +CCP C           +DP+  +     +PS+ 
Sbjct: 699 HSGRVLCETEVCPPLLCHSPIRTQ-DSCCPHCP----------DDPVTPQ-----TPSND 742

Query: 164 EIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGG----QKKCTASMCERKALEK 219
            +P        C  E+G +    +++  + C++C CL G      + C    C R  L K
Sbjct: 743 SMPSY------CRNEDGDIFLAAESWKPNVCSSCVCLDGAISCFSESCPPVNCARPVLRK 796

Query: 220 G 220
           G
Sbjct: 797 G 797

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival.
Danio rerio (taxid: 7955)

>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein OS=Gallus gallus GN=CRIM1 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CPD  
Sbjct: 620 CLSMDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCPDEI 678

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 679 IVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRT 738

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C           ++PL+    PSLS S++ +P        C  + G +    
Sbjct: 739 Q-DSCCPQCP----------DEPLQ----PSLS-SNVSMPSY------CKNDEGDIFLTA 776

Query: 187 DTYFADPCTNCTCLHG----GQKKCTASMCERKALEKG 220
           +++  + CT+C C+ G      + C    CER  L KG
Sbjct: 777 ESWKPNVCTSCICMDGVIRCYSESCPPVSCERPVLRKG 814

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival.

Gallus gallus (taxid: 9031)

>sp|Q9NZV1|CRIM1_HUMAN Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 106/218 (48%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
           C   DG    + E W DGCREC+C++GREMC LI CP  +C +P   +  QCCP C D  
Sbjct: 608 CLTVDGHHHKNEESWHDGCRECYCLNGREMCALITCPVPACGNPT-IHPGQCCPSCADDF 666

Query: 69  --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRT 726

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C           + P R    PSLS ++  +P        C  + G +    
Sbjct: 727 Q-DSCCPQC----------TDQPFR----PSLSRNN-SVPNY------CKNDEGDIFLAA 764

Query: 187 DTYFADPCTNCTCLHG----GQKKCTASMCERKALEKG 220
           +++  D CT+C C+        + C +  CER  L KG
Sbjct: 765 ESWKPDVCTSCICIDSVISCFSESCPSVSCERPVLRKG 802

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. May play a role in capillary formation and maintenance during angiogenesis. Modulates BMP activity by affecting its processing and delivery to the cell surface.

Homo sapiens (taxid: 9606)

>sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein OS=Mus musculus GN=Crim1 PE=2 SV=2

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
           C   DG    + E W DGCREC+C +G+EMC LI CP  +C +P    S QCCP C D  
Sbjct: 608 CLSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPT-IRSGQCCPSCTDDF 666

Query: 69  --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRT 726

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C           +DP +    PS S ++  +P        C  + G +    
Sbjct: 727 Q-DSCCPQC----------TDDPPQ----PSTSHNE-SVPSY------CRNDEGDIFLAA 764

Query: 187 DTYFADPCTNCTCLHGG----QKKCTASMCERKALEKG 220
           +++  D CT+C C+        + C +  CER  L KG
Sbjct: 765 ESWKPDACTSCVCVDSAISCYSESCPSVACERPVLRKG 802

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. May play a role in capillary formation and maintenance during angiogenesis. Modulates BMP activity by affecting its processing and delivery to the cell surface.

Mus musculus (taxid: 10090)

>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 15/113 (13%)

Query: 27   DGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGEL 86
            D C+ C C+DG   CT + CP +SC +PI     QCC  CP     G E +         
Sbjct: 1575 DPCQRCVCLDGSVTCTHVVCPYVSCANPI-TKPGQCCRECPVCRYQGKEFS--------- 1624

Query: 87   KLEGQHWT--LNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAG 137
              EG HW    +PC  CTC  G V C   QCP   C+  +  +PGTCCPRC G
Sbjct: 1625 --EGAHWVPHTDPCLKCTCSNGHVDCEPPQCPPLPCTQ-QVTDPGTCCPRCRG 1674

May be a signaling molecule that mediates inductive activities of the embryonic midline. Able to dorsalize mesoderm.

Xenopus laevis (taxid: 8355)

>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 17/107 (15%)

Query: 29  CRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKL 88
           C  CHC DG   C+L+ CP  +C  P  +   QCCP CPD                E+ +
Sbjct: 445 CHACHCQDGTVTCSLVDCPPTTCARPQ-SGPGQCCPRCPDCI-----------LEEEVFV 492

Query: 89  EGQHWT--LNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCP 133
           +G+ ++   +PC +C C+EG   C  + CP A C++P    PGTCCP
Sbjct: 493 DGESFSHPRDPCQECRCQEGHAHCQPRPCPRAPCAHPL---PGTCCP 536

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Homo sapiens (taxid: 9606)

>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 27   DGCRECHCIDGREMCTLIACPTLSC----QHPIPANSTQCCPYCPDATSSGHEAAVCMDF 82
            D C  C C D   +CT  ACP LSC    +H  P +   CCP C D T S      CM  
Sbjct: 1103 DPCYTCQCQDLTWLCTHRACPELSCPLWERHTTPGS---CCPVCKDPTQS------CM-H 1152

Query: 83   HGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP--EPGTCCPRC 135
             G     G+ W ++ CT C+C  G V C +Q+C   ACS    P   PG+CC RC
Sbjct: 1153 QGRWVASGEQWAVDACTSCSCVAGTVHCQTQRCRKLACSRDEVPALSPGSCCLRC 1207

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Mus musculus (taxid: 10090)

>sp|Q62919|NELL1_RAT Protein kinase C-binding protein NELL1 OS=Rattus norvegicus GN=Nell1 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 11/113 (9%)

Query: 7   ITCECQDEDG--VWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCP 64
           +T +C D+ G  ++R   + W   C++C C++G   C  +ACP+L C++       +CCP
Sbjct: 690 VTSQCLDQSGQKLYRS-GDNWTHSCQQCRCLEGEADCWPLACPSLGCEY-TAMFEGECCP 747

Query: 65  YC-PDATSSGHEA----AVCMDFHGELKLEGQHWTL--NPCTDCTCREGKVLC 110
            C  D   +G+ A      C+D  G  +L G  WT+  +PCT C C+ G+V C
Sbjct: 748 RCVSDPCLAGNIAYDIRKTCLDSFGVSRLSGAVWTMAGSPCTTCKCKNGRVCC 800

Rattus norvegicus (taxid: 10116)

>sp|Q92832|NELL1_HUMAN Protein kinase C-binding protein NELL1 OS=Homo sapiens GN=NELL1 PE=1 SV=4

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 20/156 (12%)

Query: 14  EDGVWRDDSEIW---RDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
            +G  + + ++W    D C  C C DG+  C   AC    CQ+P  +    CCP C    
Sbjct: 636 HEGGLKHNGQVWTLKEDRCSVCSCKDGKIFCRRTAC---DCQNP--SADLFCCPECDTRV 690

Query: 71  SSGHEAAVCMDFHG-ELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPG 129
           +S      C+D +G +L   G +WT + C  C C EG+V C+   CP  +C      E G
Sbjct: 691 TSQ-----CLDQNGHKLYRSGDNWT-HSCQQCRCLEGEVDCWPLTCPNLSCEYTAILE-G 743

Query: 130 TCCPRCAG----ADEITALVVEDPLRKESTPSLSPS 161
            CCPRC      AD IT  + +  L       LS S
Sbjct: 744 ECCPRCVSDPCLADNITYDIRKTCLDSYGVSRLSGS 779

Involved in the control of cell growth and differentiation.

Homo sapiens (taxid: 9606)

>sp|Q2VWQ2|NELL1_MOUSE Protein kinase C-binding protein NELL1 OS=Mus musculus GN=Nell1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 7   ITCECQDEDG--VWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCP 64
           +T +C D+ G  ++R   + W   C++C C++G   C  +ACP+LSC++       +CCP
Sbjct: 690 VTSQCLDQSGQKLYRS-GDNWTHSCQQCRCLEGEADCWPLACPSLSCEY-TAIFEGECCP 747

Query: 65  YCPDATSSGHEAA-----VCMDFHGELKLEGQHWTL--NPCTDCTCREGKVLC 110
            C          A      C+D  G  +L G  WT+  +PCT C C+ G+V C
Sbjct: 748 RCVSDPCLADNIAYDIRKTCLDSSGISRLSGAVWTMAGSPCTTCQCKNGRVCC 800

Involved in the control of cell growth and differentiation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
260781193	966	hypothetical protein BRAFLDRAFT_120522 [	0.701	0.192	0.384	5e-26
47230270	741	unnamed protein product [Tetraodon nigro	0.705	0.252	0.371	2e-25
348520696	894	PREDICTED: cysteine-rich motor neuron 1	0.701	0.208	0.374	5e-25
410898313	936	PREDICTED: cysteine-rich motor neuron 1	0.705	0.199	0.368	1e-24
390363077	1100	PREDICTED: cysteine-rich motor neuron 1	0.698	0.168	0.362	2e-24
326915423	937	PREDICTED: cysteine-rich motor neuron 1	0.705	0.199	0.348	5e-23
190339370	1027	Cysteine rich transmembrane BMP regulato	0.728	0.187	0.319	5e-23
47086391	1027	cysteine-rich motor neuron 1 protein pre	0.728	0.187	0.319	6e-23
45383315	1048	cysteine-rich motor neuron 1 protein pre	0.705	0.178	0.348	6e-23
224047657	1018	PREDICTED: cysteine-rich motor neuron 1	0.705	0.183	0.348	1e-22

>gi|260781193|ref|XP_002585706.1| hypothetical protein BRAFLDRAFT_120522 [Branchiostoma floridae] gi|229270738|gb|EEN41717.1| hypothetical protein BRAFLDRAFT_120522 [Branchiostoma floridae]

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 110/221 (49%), Gaps = 35/221 (15%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   +D E W DGCREC+C  G+EMC LI CP  SC+ PI   + QCCP CPD  
Sbjct: 544 CLSMDGQRYEDGEGWHDGCRECYCHGGQEMCALITCPAPSCKQPI-IRAGQCCPTCPDDV 602

Query: 71  SSGHEAA----VCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
            +  + A    VC    GE  +EG+ W L+ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 603 DNASKPAANPTVCHSPGGEYFVEGETWQLDQCTQCTCHNGQVLCDTEACPPLLCQNPIRT 662

Query: 127 EPGTCCPRC---AGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLL 183
           + G+CC  C    GAD         PL         P D+  P      + C  E G + 
Sbjct: 663 D-GSCCAVCPDDTGADMF-------PL---------PPDMSEP------ILCHGEEGEMF 699

Query: 184 HVGDTYFADPCTNCTCLHGG----QKKCTASMCERKALEKG 220
             G+++ A+ CT+C CLHG      + C    C+R  L KG
Sbjct: 700 LHGESWKANVCTSCVCLHGNITCYSETCPPVRCKRPVLRKG 740

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47230270|emb|CAG10684.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 111/218 (50%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   ++ + W DGCR+C+C  GREMC LI+CP  SC  P+   S QCCP C D +
Sbjct: 358 CLTSDGRRYEEGDGWHDGCRDCYCHAGREMCVLISCPVPSCTQPV-VRSDQCCPTCEDES 416

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
            SG     +  VC    GE  +EG+ W L+ CT CTCR+G+VLC ++ CP   C  P   
Sbjct: 417 GSGQPDGMDMVVCRAPGGEFYVEGETWNLDECTRCTCRKGRVLCDTEVCPPVLCQAPTRT 476

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  TCC  C   DE      + PL              +P    +   C+  +G +L VG
Sbjct: 477 K-DTCCHVC--PDE-----TQSPL--------------LPVNSSQQEYCITNDGDVLLVG 514

Query: 187 DTYFADPCTNCTCLHGG----QKKCTASMCERKALEKG 220
           D++ A+ CT+CTC +G      + C A+ C    L KG
Sbjct: 515 DSWKANACTSCTCNNGTIQCFSQSCPAANCRVPVLRKG 552

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348520696|ref|XP_003447863.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Oreochromis niloticus]

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 33/219 (15%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   +G   ++ E W DGCR+C+C  GREMC LI+CP  SC HP+     QCCP C D +
Sbjct: 530 CLTSNGQKYEEGEGWHDGCRDCYCHSGREMCVLISCPVPSCLHPL-VKPDQCCPTCEDDS 588

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
            SG     +  VC    GE  +EG+ W L+ CT CTCR+G+VLC ++ CP A C  P   
Sbjct: 589 GSGQPEGMDMVVCRAPGGEFYVEGETWNLDECTRCTCRKGRVLCDTEVCPPALCQAPIRN 648

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  TCC  C                 E TP L  ++ +      EY  C+  +G +L  G
Sbjct: 649 K-DTCCHVCP----------------EETPLLPVNNSQ-----QEY--CITSDGDVLLAG 684

Query: 187 DTYFADPCTNCTCLHGG----QKKCTASMCERKALEKGD 221
           D++ A+ CT+CTC +G      + C A+ C    L KG 
Sbjct: 685 DSWKANVCTSCTCNNGTIQCFSQHCPAAKCRVPVLRKGQ 723

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410898313|ref|XP_003962642.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Takifugu rubripes]

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 110/217 (50%), Gaps = 30/217 (13%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C    G   ++ + W DGCR+C+C  GREMC LI+CP  SC  P+   S QCCP C D +
Sbjct: 571 CLTSSGRRYEEGDGWHDGCRDCYCHSGREMCVLISCPVPSCSQPV-VRSDQCCPTCEDES 629

Query: 71  SSGHEAA---VCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPE 127
            SG       VC    GE+ +EG+ W L+ CT CTCR+G+VLC ++ CP A C  P   +
Sbjct: 630 GSGQPDGVDVVCQAPGGEIYVEGETWNLDECTRCTCRKGRVLCDTEVCPPALCQVPVRNK 689

Query: 128 PGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVGD 187
             TCC  C   DE      + PL              +P    +   C+  +G +L  GD
Sbjct: 690 -DTCCHAC--PDE-----TQSPL--------------LPVNSSQQEYCITNDGDVLLAGD 727

Query: 188 TYFADPCTNCTCLHGG----QKKCTASMCERKALEKG 220
           ++ A+ CT+CTC +G      + C A+ C    L KG
Sbjct: 728 SWRANACTSCTCNNGTIQCFSQSCPAASCRVPVLRKG 764

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390363077|ref|XP_780685.3| PREDICTED: cysteine-rich motor neuron 1 protein-like [Strongylocentrotus purpuratus]

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 107/218 (49%), Gaps = 33/218 (15%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           CQ  DGV  DD E W DGCR+C+C +G+EMC+LI C   +C  P+   S QCCP CPD+ 
Sbjct: 661 CQGVDGVVYDDGESWHDGCRQCYCSNGQEMCSLITCQVPACSKPV-FRSDQCCPTCPDSG 719

Query: 71  SSGHEAA---VCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPE 127
            +   A    VC    G+  +EG+ W L  CT C C  G+VLC ++ CP   C NP   +
Sbjct: 720 VTQLPAVISQVCQSASGQYYVEGETWMLGRCTSCMCHAGQVLCSAEVCPPLPCVNPV-FK 778

Query: 128 PGTCCPRCAGADEITALV-VEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
              CC  C   +E+ A V + DP  +E                    SC+L NG      
Sbjct: 779 ASHCCAEC---EEVLAEVPIGDPTVEE--------------------SCMLPNGVTFQHA 815

Query: 187 DTYFADPCTNCTCLHGG----QKKCTASMCERKALEKG 220
            T+  D CT+C C+ G      + C    C++  L+KG
Sbjct: 816 ATWKEDSCTSCQCVSGETMCFSQTCPPVDCDKPLLKKG 853

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|326915423|ref|XP_003204017.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Meleagris gallopavo]

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CPD  
Sbjct: 510 CLSVDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCPDEI 568

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 569 IVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRT 628

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C           ++PL+    PSLS S++ +P        C  + G +    
Sbjct: 629 Q-DSCCPQCP----------DEPLQ----PSLS-SNVSMPSY------CKNDEGDIFLTA 666

Query: 187 DTYFADPCTNCTCLHG----GQKKCTASMCERKALEKG 220
           +++  + CT+C C+ G      + C    CER  L KG
Sbjct: 667 ESWKPNVCTSCICMDGVIRCYSESCPPVSCERPVLRKG 704

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|190339370|gb|AAI62591.1| Cysteine rich transmembrane BMP regulator 1 (chordin like) [Danio rerio]

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 48/241 (19%)

Query: 5   GCITCECQDE-----------------DGVWRDDSEIWRDGCRECHCIDGREMCTLIACP 47
           GC+ C+C+D+                 DG   ++ + W DGCR+C+C  GREMC LI+CP
Sbjct: 580 GCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGREMCALISCP 639

Query: 48  TLSCQHPIPANSTQCCPYCPDATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTC 103
              C +P       CCP CP+ +SS      EA+VC+   GE  +EG+ W ++ CT CTC
Sbjct: 640 VPPCDNPT-IRPGHCCPTCPEESSSHKPELSEASVCLAPGGEYFVEGETWNIDSCTQCTC 698

Query: 104 REGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDL 163
             G+VLC ++ CP   C +P   +  +CCP C           +DP+  +     +PS+ 
Sbjct: 699 HSGRVLCETEVCPPLLCHSPIRTQ-DSCCPHCP----------DDPVTPQ-----TPSND 742

Query: 164 EIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGG----QKKCTASMCERKALEK 219
            +P        C  E+G +    +++  + C++C CL G      + C    C R  L K
Sbjct: 743 SMPSY------CRNEDGDIFLAAESWKPNVCSSCVCLDGAISCFSESCPPVNCARPVLRK 796

Query: 220 G 220
           G
Sbjct: 797 G 797

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47086391|ref|NP_997986.1| cysteine-rich motor neuron 1 protein precursor [Danio rerio] gi|67460507|sp|Q7T3Q2.1|CRIM1_DANRE RecName: Full=Cysteine-rich motor neuron 1 protein; Short=CRIM-1; Flags: Precursor gi|31322061|gb|AAN72833.1| cysteine-rich motor neuron 1 [Danio rerio]

 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 48/241 (19%)

Query: 5   GCITCECQDE-----------------DGVWRDDSEIWRDGCRECHCIDGREMCTLIACP 47
           GC+ C+C+D+                 DG   ++ + W DGCR+C+C  GREMC LI+CP
Sbjct: 580 GCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGREMCALISCP 639

Query: 48  TLSCQHPIPANSTQCCPYCPDATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTC 103
              C +P       CCP CP+ +SS      EA+VC+   GE  +EG+ W ++ CT CTC
Sbjct: 640 VPPCDNPT-IRPGHCCPTCPEESSSHKPELSEASVCLAPGGEYFVEGETWNIDSCTQCTC 698

Query: 104 REGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDL 163
             G+VLC ++ CP   C +P   +  +CCP C           +DP+  +     +PS+ 
Sbjct: 699 HSGRVLCETEVCPPLLCHSPIRTQ-DSCCPHCP----------DDPVTPQ-----TPSND 742

Query: 164 EIPRIGDEYLSCLLENGTLLHVGDTYFADPCTNCTCLHGG----QKKCTASMCERKALEK 219
            +P        C  E+G +    +++  + C++C CL G      + C    C R  L K
Sbjct: 743 SMPSY------CRNEDGDIFLAAESWKPNVCSSCVCLDGAISCFSESCPPVNCARPVLRK 796

Query: 220 G 220
           G
Sbjct: 797 G 797

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45383315|ref|NP_989756.1| cysteine-rich motor neuron 1 protein precursor [Gallus gallus] gi|67460545|sp|Q8AWW5.1|CRIM1_CHICK RecName: Full=Cysteine-rich motor neuron 1 protein; Short=CRIM-1; Flags: Precursor gi|27348109|gb|AAM28339.1| cysteine-rich motorneuron 1 [Gallus gallus]

 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CPD  
Sbjct: 620 CLSMDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCPDEI 678

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 679 IVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRT 738

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C           ++PL+    PSLS S++ +P        C  + G +    
Sbjct: 739 Q-DSCCPQCP----------DEPLQ----PSLS-SNVSMPSY------CKNDEGDIFLTA 776

Query: 187 DTYFADPCTNCTCLHG----GQKKCTASMCERKALEKG 220
           +++  + CT+C C+ G      + C    CER  L KG
Sbjct: 777 ESWKPNVCTSCICMDGVIRCYSESCPPVSCERPVLRKG 814

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224047657|ref|XP_002190977.1| PREDICTED: cysteine-rich motor neuron 1 protein [Taeniopygia guttata]

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 11  CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
           C   DG   ++ E W DGCREC+C  GREMC LI CP  SC +P   +  QCCP CPD  
Sbjct: 590 CLSMDGRRHENEESWHDGCRECYCHKGREMCALITCPVPSCANPT-IHPGQCCPSCPDEI 648

Query: 71  SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                     ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct: 649 IVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRT 708

Query: 127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
           +  +CCP+C   DE    +   P   ES PS   +D                +G +    
Sbjct: 709 Q-DSCCPQC--PDET---LQASPSSNESMPSYCKND----------------DGDIFLTA 746

Query: 187 DTYFADPCTNCTCLHG----GQKKCTASMCERKALEKG 220
           +++  + CT+C C+ G      + C    CER  L KG
Sbjct: 747 ESWKPNVCTSCICMDGVIRCYSESCPPVSCERPVLRKG 784

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
UNIPROTKB|F1NUZ6	1033	CRIM1 "Cysteine-rich motor neu	0.475	0.121	0.416	8.2e-30
UNIPROTKB|E1C916	1039	CRIM1 "Cysteine-rich motor neu	0.475	0.121	0.416	8.4e-30
UNIPROTKB|Q8AWW5	1048	CRIM1 "Cysteine-rich motor neu	0.475	0.120	0.416	8.6e-30
ZFIN|ZDB-GENE-040312-2	1027	crim1 "cysteine rich transmemb	0.686	0.177	0.340	3.4e-27
MGI|MGI:1354756	1037	Crim1 "cysteine rich transmemb	0.720	0.184	0.341	2.5e-26
UNIPROTKB|Q9NZV1	1036	CRIM1 "Cysteine-rich motor neu	0.720	0.184	0.336	3.1e-26
UNIPROTKB|E2R003	1037	CRIM1 "Uncharacterized protein	0.720	0.184	0.341	4e-26
UNIPROTKB|F1S412	880	CRIM1 "Uncharacterized protein	0.720	0.217	0.341	6.3e-26
RGD|1308710	1037	Crim1 "cysteine rich transmemb	0.701	0.179	0.342	6.6e-26
UNIPROTKB|F1MW38	1035	CRIM1 "Uncharacterized protein	0.720	0.184	0.336	2.9e-25

UNIPROTKB|F1NUZ6 CRIM1 "Cysteine-rich motor neuron 1 protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
 Identities = 55/132 (41%), Positives = 74/132 (56%)

Query:     8 TCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCP 67
             T  C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CP
Sbjct:   602 TGSCLSMDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCP 660

Query:    68 DATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNP 123
             D            ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP
Sbjct:   661 DEIIVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNP 720

Query:   124 RPPEPGTCCPRC 135
                +  +CCP+C
Sbjct:   721 TRTQD-SCCPQC 731

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E1C916 CRIM1 "Cysteine-rich motor neuron 1 protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
 Identities = 55/132 (41%), Positives = 74/132 (56%)

Query:     8 TCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCP 67
             T  C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CP
Sbjct:   607 TGSCLSMDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCP 665

Query:    68 DATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNP 123
             D            ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP
Sbjct:   666 DEIIVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNP 725

Query:   124 RPPEPGTCCPRC 135
                +  +CCP+C
Sbjct:   726 TRTQD-SCCPQC 736

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|Q8AWW5 CRIM1 "Cysteine-rich motor neuron 1 protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 55/132 (41%), Positives = 74/132 (56%)

Query:     8 TCECQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCP 67
             T  C   DG   ++ E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP CP
Sbjct:   617 TGSCLSMDGRRHENEESWHDGCRECYCHNGREMCALITCPVPNCGNPT-IHPGQCCPSCP 675

Query:    68 DATSSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNP 123
             D            ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP
Sbjct:   676 DEIIVQKPELTSPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNP 735

Query:   124 RPPEPGTCCPRC 135
                +  +CCP+C
Sbjct:   736 TRTQD-SCCPQC 746

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040312-2 crim1 "cysteine rich transmembrane BMP regulator 1 (chordin like)" [Danio rerio (taxid:7955)]

 Score = 317 (116.6 bits), Expect = 3.4e-27, P = 3.4e-27
 Identities = 66/194 (34%), Positives = 99/194 (51%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDAT 70
             C   DG   ++ + W DGCR+C+C  GREMC LI+CP   C +P       CCP CP+ +
Sbjct:   603 CLSMDGRRHENGQSWHDGCRDCYCHAGREMCALISCPVPPCDNPT-IRPGHCCPTCPEES 661

Query:    71 SSGH----EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
             SS      EA+VC+   GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C +P   
Sbjct:   662 SSHKPELSEASVCLAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCHSPIRT 721

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPS-DLEIPRIGDEYLSCLLENGTLLHV 185
             +  +CCP C   D +T    + P   +S PS   + D +I    + +   +  +   L  
Sbjct:   722 QD-SCCPHCPD-DPVTP---QTP-SNDSMPSYCRNEDGDIFLAAESWKPNVCSSCVCLDG 775

Query:   186 GDTYFADPCTNCTC 199
               + F++ C    C
Sbjct:   776 AISCFSESCPPVNC 789

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001756 "somitogenesis" evidence=IMP

GO:0048570 "notochord morphogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1354756 Crim1 "cysteine rich transmembrane BMP regulator 1 (chordin like)" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 73/214 (34%), Positives = 99/214 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C +G+EMC LI CP  +C +P    S QCCP C D  
Sbjct:   608 CLSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPT-IRSGQCCPSCTDDF 666

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRT 726

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
             +  +CCP+C   D+            ES PS   +D E    GD +L+   E+       
Sbjct:   727 QD-SCCPQCT--DDPPQ---PSTSHNESVPSYCRND-E----GDIFLAA--ESWKPDACT 773

Query:   187 DTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                  D   +C       + C +  CER  L KG
Sbjct:   774 SCVCVDSAISCY-----SESCPSVACERPVLRKG 802

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NZV1 CRIM1 "Cysteine-rich motor neuron 1 protein" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 72/214 (33%), Positives = 100/214 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C++GREMC LI CP  +C +P   +  QCCP C D  
Sbjct:   608 CLTVDGHHHKNEESWHDGCRECYCLNGREMCALITCPVPACGNPT-IHPGQCCPSCADDF 666

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRT 726

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
             +  +CCP+C       +L      R  S P+   +D E    GD +L+   E+       
Sbjct:   727 QD-SCCPQCTDQPFRPSLS-----RNNSVPNYCKND-E----GDIFLAA--ESWKPDVCT 773

Query:   187 DTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                  D   +C       + C +  CER  L KG
Sbjct:   774 SCICIDSVISCF-----SESCPSVSCERPVLRKG 802

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005010 "insulin-like growth factor-activated receptor activity" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=TAS

UNIPROTKB|E2R003 CRIM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 73/214 (34%), Positives = 100/214 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP C D  
Sbjct:   608 CLSMDGHHHKNEESWHDGCRECYCHNGREMCALITCPVPACGNPT-IHPGQCCPSCSDDF 666

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCENPSRT 726

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
             +  +CCP+C   DE    +       +S PS   +D E    GD +L+   E+       
Sbjct:   727 QD-SCCPQCT--DEP---LQPSSSHNDSVPSYCKND-E----GDIFLAA--ESWKPDVCT 773

Query:   187 DTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                  D   +C       + C +  CER  L KG
Sbjct:   774 SCVCMDSVISCY-----SESCPSVSCERPVLRKG 802

GO:0005576 "extracellular region" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

UNIPROTKB|F1S412 CRIM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 304 (112.1 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 73/214 (34%), Positives = 100/214 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C +GREMC LI CP  +C +P   +  QCCP C D  
Sbjct:   450 CLSMDGHHHKNEESWHDGCRECYCHNGREMCALITCPVPACGNPT-IHPGQCCPSCSDDF 508

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   509 VVQKPELSTPSICHAPGGEYFVEGETWHIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRT 568

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
             +  +CCP+C   DE    +       +S PS   +D E    GD +L+   E+       
Sbjct:   569 QD-SCCPQCP--DEP---LQPSSSHNDSVPSYCKND-E----GDIFLAA--ESWKPDVCT 615

Query:   187 DTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                  D   +C       + C +  CER  L KG
Sbjct:   616 SCVCLDSVISCF-----SESCPSVSCERPVLRKG 644

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

RGD|1308710 Crim1 "cysteine rich transmembrane BMP regulator 1 (chordin like)" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 75/219 (34%), Positives = 101/219 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C +G+EMC LI CP  +C +P      QCCP C D  
Sbjct:   608 CLSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPT-IRPGQCCPSCADDF 666

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   667 VVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRT 726

Query:   127 EPGTCCPRCAGADEITALVVEDPLR-----KESTPSLSPSDLEIPRIGDEYLSCLLENGT 181
             +  +CCP+C           EDPL+      ES PS   +D E    GD +L+   E+  
Sbjct:   727 QD-SCCPQCT----------EDPLQPSTSHNESVPSYCRND-E----GDIFLAA--ESWK 768

Query:   182 LLHVGDTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                       D   +C       + C +  CER  L KG
Sbjct:   769 PDVCTSCVCMDSSISCY-----SESCPSVACERPVLRKG 802

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MW38 CRIM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 72/214 (33%), Positives = 99/214 (46%)

Query:    11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPD-- 68
             C   DG    + E W DGCREC+C  GREMC LI CP  +C +P   +  +CCP C D  
Sbjct:   608 CLSMDGHHHKNGESWHDGCRECYCHSGREMCALITCPVPACGNPT-IHPGRCCPSCSDDF 666

Query:    69 --ATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPP 126
                       ++C    GE  +EG+ W ++ CT CTC  G+VLC ++ CP   C NP   
Sbjct:   667 VVQKPELSTPSICHAPGGEYFVEGETWHIDTCTQCTCHSGRVLCETEVCPPLLCQNPTRT 726

Query:   127 EPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCLLENGTLLHVG 186
             +  +CCP+C   DE    +       +S PS   +D E    GD +L+   E+       
Sbjct:   727 QD-SCCPQCP--DEP---LQPSSSHNDSVPSYCKND-E----GDIFLAA--ESWKPDVCT 773

Query:   187 DTYFADPCTNCTCLHGGQKKCTASMCERKALEKG 220
                  D   +C       + C +  CER  L KG
Sbjct:   774 SCVCMDSVISCY-----SESCPSVSCERPVLRKG 802

GO:0005576 "extracellular region" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
pfam00093	57	pfam00093, VWC, von Willebrand factor type C domai	3e-06
smart00214	59	smart00214, VWC, von Willebrand factor (vWF) type	2e-05
pfam00093	57	pfam00093, VWC, von Willebrand factor type C domai	0.003

>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 89  EGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRP-PEPGTCCPRC 135
            G+ W  + CT CTC +GKVLC    CP   C +PR    PG CCP C
Sbjct: 10  NGETWKPDLCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57

The high cutoff was used to prevent overlap with pfam00094. Length = 57

>gnl|CDD|214564 smart00214, VWC, von Willebrand factor (vWF) type C domain

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 82  FHGELKLEGQHWTLNPCTDCTCREGK-VLCYSQQCPAA-ACSNPRPPE-PGTCCPRC 135
            +G +  +G+ W  +PC  CTC +G  VLC   +CP    C NP   + PG CCPRC
Sbjct: 3   HNGRVYNDGETWKPDPCQICTCLDGTTVLCDPVECPPPPDCPNPERVKPPGECCPRC 59

Length = 59

>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 14 EDGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLSCQHPIPANST-QCCPYC 66
          ++GV  ++ E W+ D C  C C DG+ +C  I CP L C  P       +CCP C
Sbjct: 3  QNGVVYENGETWKPDLCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57

The high cutoff was used to prevent overlap with pfam00094. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	99.37
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	99.36
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	99.27
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	99.27
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	98.21
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	97.73
PF12714	56	TILa: TILa domain	97.29
PF12714	56	TILa: TILa domain	97.24
PF05375	39	Pacifastin_I: Pacifastin inhibitor (LCMII); InterP	95.56
CHL00038	38	psbL photosystem II protein L	95.31
PRK00753	39	psbL photosystem II reaction center L; Provisional	94.93
PF02419	37	PsbL: PsbL protein; InterPro: IPR003372 Oxygenic p	94.77
PF05825	94	PSP94: Beta-microseminoprotein (PSP-94); InterPro:	94.61
PF05375	39	Pacifastin_I: Pacifastin inhibitor (LCMII); InterP	93.81
PF05825	94	PSP94: Beta-microseminoprotein (PSP-94); InterPro:	89.57
KOG1544|consensus	470		89.3
cd00061	43	FN1 Fibronectin type 1 domain, approximately 40 re	84.03
cd00061	43	FN1 Fibronectin type 1 domain, approximately 40 re	83.5
KOG1544|consensus	470		81.22
PF14828	437	Amnionless: Amnionless	80.93

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=99.37  E-value=5.9e-13  Score=91.72  Aligned_cols=56  Identities=46%  Similarity=1.234  Sum_probs=34.3

Q ss_pred             ccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCCCCCCC-CCCCCCCCcccc
Q psy10995         79 CMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNP-RPPEPGTCCPRC  135 (265)
Q Consensus        79 C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~~C~~~-~~~~~g~CCp~C  135 (265)
                      |. ++|++|.+|++|+++.|+.|+|.+|+|.|.++.||.+.|+++ ....+|+|||+|
T Consensus         1 C~-~~g~~y~~g~~w~~~~C~~C~C~~G~v~C~~~~Cp~~~C~~~~~~~~~g~CCp~C   57 (57)
T PF00093_consen    1 CS-FNGRVYQNGESWHPDPCTTCTCQDGEVQCSRIQCPPLDCPNPELVKPPGECCPVC   57 (57)
T ss_dssp             EE-SSS-EE-SS-EE-S-SSEEEEEETTEEEEEE---S-SS-S-------SS-S--S-
T ss_pred             Ce-eCCEEeCCCCEECCCCCcEeEecCCEEEEcCCCCcCCCCCCCceecCCCCcCCCC
Confidence            55 899999999999999999999999999999999999999998 223899999986

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=99.36  E-value=6e-13  Score=91.72  Aligned_cols=54  Identities=37%  Similarity=1.003  Sum_probs=33.3

Q ss_pred             ecCCCeEeCCCCeee-cCCcceEECCCceEEeeccCCCCCCCCC--CCCCCCCCcCCC
Q psy10995         12 QDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLSCQHP--IPANSTQCCPYC   66 (265)
Q Consensus        12 c~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~~Cp~~~C~~~--~~~~~g~CCp~C   66 (265)
                      |.++|+.|.+|++|+ ++|+.|+|++|.|.|.++.||+++|+++  +. .+|+|||+|
T Consensus         1 C~~~g~~y~~g~~w~~~~C~~C~C~~G~v~C~~~~Cp~~~C~~~~~~~-~~g~CCp~C   57 (57)
T PF00093_consen    1 CSFNGRVYQNGESWHPDPCTTCTCQDGEVQCSRIQCPPLDCPNPELVK-PPGECCPVC   57 (57)
T ss_dssp             EESSS-EE-SS-EE-S-SSEEEEEETTEEEEEE---S-SS-S--------SS-S--S-
T ss_pred             CeeCCEEeCCCCEECCCCCcEeEecCCEEEEcCCCCcCCCCCCCceec-CCCCcCCCC
Confidence            568999999999999 6699999999999999999999999998  55 899999986

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=99.27  E-value=6.5e-12  Score=87.13  Aligned_cols=55  Identities=35%  Similarity=0.984  Sum_probs=49.3

Q ss_pred             ecCCCeEeCCCCeee-cCCcceEECCCc-eEEeeccCCCC-CCCCCCC-CCCCCCcCCC
Q psy10995         12 QDEDGVWRDDSEIWR-DGCRECHCIDGR-EMCTLIACPTL-SCQHPIP-ANSTQCCPYC   66 (265)
Q Consensus        12 c~~~G~~y~~Ge~w~-~~C~~C~C~~G~-v~C~~~~Cp~~-~C~~~~~-~~~g~CCp~C   66 (265)
                      |.++|+.|++|++|+ ++|+.|+|.+|. |.|.++.||++ +|+++.. ..+|+|||+|
T Consensus         1 C~~~g~~y~~G~~W~~~~C~~C~C~~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214        1 CVHNGEVYNDGETWKPDPCQICTCLDGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             CccCCEEeCCCCEECCCCCeECCcCCCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            568999999999999 569999999999 99999999986 8998872 3899999976

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=99.27  E-value=7.6e-12  Score=86.78  Aligned_cols=56  Identities=46%  Similarity=1.271  Sum_probs=50.8

Q ss_pred             ccccCCeEEcCCcEEccCCCccceecCCe-EEEeecCCCCC-CCCCCCC-CCCCCCcccc
Q psy10995         79 CMDFHGELKLEGQHWTLNPCTDCTCREGK-VLCYSQQCPAA-ACSNPRP-PEPGTCCPRC  135 (265)
Q Consensus        79 C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~-v~C~~~~Cp~~-~C~~~~~-~~~g~CCp~C  135 (265)
                      |. ++|++|.+|++|++++|++|+|.+|. |.|.++.||.+ .|+++.. ..+|+|||+|
T Consensus         1 C~-~~g~~y~~G~~W~~~~C~~C~C~~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214        1 CV-HNGEVYNDGETWKPDPCQICTCLDGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             Cc-cCCEEeCCCCEECCCCCeECCcCCCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            55 89999999999999999999999999 99999999986 8998872 3899999976

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=98.21  E-value=1.1e-06  Score=62.28  Aligned_cols=42  Identities=29%  Similarity=0.770  Sum_probs=38.4

Q ss_pred             ecCCCeEeCCCCeeecCCcceEECCCceEEeeccCCCCCCCC
Q psy10995         12 QDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQH   53 (265)
Q Consensus        12 c~~~G~~y~~Ge~w~~~C~~C~C~~G~v~C~~~~Cp~~~C~~   53 (265)
                      |.++|+.|++|+.|.++|.+|+|.+|.+.|+++.|++..|..
T Consensus         1 C~~~G~~y~~g~~w~d~Cn~CtC~~G~v~Ct~~~C~~~~c~l   42 (67)
T smart00215        1 CYNNGSYYPPGAKWDDDCNRCTCLNGRVSCTKVWCGPKPCLL   42 (67)
T ss_pred             CeECCEEcCCCCccccCCCCCEecCCCEEecCCcCCCchhhc
Confidence            568999999999999999999999999999999999877653

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=97.73  E-value=2.6e-05  Score=55.33  Aligned_cols=42  Identities=31%  Similarity=0.813  Sum_probs=37.1

Q ss_pred             ccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCCCCCC
Q psy10995         79 CMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSN  122 (265)
Q Consensus        79 C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~~C~~  122 (265)
                      |+ ++|+.|.+|++|. +.|..|+|.+|.|.|.+..|+..+|..
T Consensus         1 C~-~~G~~y~~g~~w~-d~Cn~CtC~~G~v~Ct~~~C~~~~c~l   42 (67)
T smart00215        1 CY-NNGSYYPPGAKWD-DDCNRCTCLNGRVSCTKVWCGPKPCLL   42 (67)
T ss_pred             Ce-ECCEEcCCCCccc-cCCCCCEecCCCEEecCCcCCCchhhc
Confidence            44 7899999999997 899999999999999999998766653

>PF12714 TILa: TILa domain

Probab=97.29  E-value=0.00045  Score=47.22  Aligned_cols=40  Identities=38%  Similarity=1.021  Sum_probs=34.2

Q ss_pred             ccccCCeEEcCCcEEccCCCc-ccee-cCCeEEEeecCCCCC
Q psy10995         79 CMDFHGELKLEGQHWTLNPCT-DCTC-REGKVLCYSQQCPAA  118 (265)
Q Consensus        79 C~~~~g~~y~~Ge~w~~~~C~-~C~C-~~g~v~C~~~~Cp~~  118 (265)
                      |.+++|+.|+.||+|..+.|+ .|+| .+|.|.|+...|++.
T Consensus         2 C~d~~G~yy~~Ge~~~~~~C~~~C~C~~~g~v~C~~~~C~~~   43 (56)
T PF12714_consen    2 CTDYNGRYYPPGESWWTDDCTQRCTCQPNGQVQCQPSSCPPG   43 (56)
T ss_pred             CcCcCCEEECCCCEEeCCCCCEeEEEcCCCeEEEeCCCCCCC
Confidence            556799999999999987776 7999 689999999888753

>PF12714 TILa: TILa domain

Probab=97.24  E-value=0.00055  Score=46.79  Aligned_cols=38  Identities=29%  Similarity=0.764  Sum_probs=32.6

Q ss_pred             eec-CCCeEeCCCCeee-cCCc-ceEE-CCCceEEeeccCCC
Q psy10995         11 CQD-EDGVWRDDSEIWR-DGCR-ECHC-IDGREMCTLIACPT   48 (265)
Q Consensus        11 cc~-~~G~~y~~Ge~w~-~~C~-~C~C-~~G~v~C~~~~Cp~   48 (265)
                      +|. ++|+.|..||+|. +.|+ .|+| .+|.|+|++..|++
T Consensus         1 GC~d~~G~yy~~Ge~~~~~~C~~~C~C~~~g~v~C~~~~C~~   42 (56)
T PF12714_consen    1 GCTDYNGRYYPPGESWWTDDCTQRCTCQPNGQVQCQPSSCPP   42 (56)
T ss_pred             CCcCcCCEEECCCCEEeCCCCCEeEEEcCCCeEEEeCCCCCC
Confidence            355 9999999999998 6786 7999 67999999998875

>PF05375 Pacifastin_I: Pacifastin inhibitor (LCMII); InterPro: IPR008037 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.56  E-value=0.016  Score=36.63  Aligned_cols=29  Identities=34%  Similarity=0.909  Sum_probs=24.4

Q ss_pred             CCCCeeecCCcceEEC-CCceEEeeccCCC
Q psy10995         20 DDSEIWRDGCRECHCI-DGREMCTLIACPT   48 (265)
Q Consensus        20 ~~Ge~w~~~C~~C~C~-~G~v~C~~~~Cp~   48 (265)
                      ..|+.|...|..|+|. +|...|+++.|++
T Consensus         3 ~pG~~~k~dCN~C~C~~~G~~~CT~~~C~~   32 (39)
T PF05375_consen    3 TPGSTFKKDCNTCTCSSDGKWACTRKACPP   32 (39)
T ss_dssp             -TTTEEEETTEEEEEBTTSSEEEE-SSSS-
T ss_pred             CCCCeeeCCCCCCCCCCCCcCccCcccCcC
Confidence            3689999999999999 8999999999975

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of serine protease inhibitors belong to MEROPS inhibitor family I19, clan IW. They inhibit chymotrpsin, a peptidase belong to the S1 family (IPR001254 from INTERPRO) []. They were first isolated from Locusta migratoria migratoria(migratory locust). These were HI, LMCI-1 (PMP-D2) and LMCI-2 (PMP-C) [, , ]; five additional members SGPI-1 to 5 were identified in Schistocerca gregaria (desert locust) [, ], and a heterodimeric serine protease inhibitor (pacifastin) was isolated from the hemolymph of Pacifastacus leniusculus (Signal crayfish) []. Pacifastin is a 155kDa composed of two covalently linked subunits, which are separately encoded. The heavy chain of pacifastin (105 kDa) is related to transferrins, containing three transferrin lobes, two of which seem to be active for iron binding []. A number of the members of the transferrin family are also serine peptidases belong to MEROPS peptidase family S60 (IPR001156 from INTERPRO). The light chain of pacifastin (44 kDa) is the proteinase inhibitory subunit, and has nine cysteine-rich inhibitory domains that are homologous to each other. The locust inhibitors share a conserved array of six cysteine residues with the pacifastin light chain. The structure of members of this family reveal that they are comprised of a triple-stranded antiparallel beta-sheet connected by three disulphide bridges []. The biological function(s) of the locust inhibitors is (are) not fully understood. LMCI-1 and LMCI-2 were shown to inhibit the endogenous proteolytic activating cascade of prophenoloxidase []. Expression analysis shows that the genes encoding the SGPI precursors are differentially expressed in a time-, stage- and hormone-dependent manner.; GO: 0030414 peptidase inhibitor activity; PDB: 2VU8_I 1WO9_A 1GL1_K 1PMC_A 2XTT_A 2F91_B 1KJ0_A 1GL0_I 1KGM_A 3TVJ_I.

>CHL00038 psbL photosystem II protein L

Probab=95.31  E-value=0.04  Score=33.83  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=24.7

Q ss_pred             CCCccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995        231 SPESATNRQIRESLYILLIVLFAVSTLFAFYA  262 (265)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      +|-.+.-+-=|-|||++|+.||.+.+||--|.
T Consensus         5 NPN~q~VELNRTSLy~GLLlifvl~vlfssyf   36 (38)
T CHL00038          5 NPNKQNVELNRTSLYWGLLLIFVLAVLFSNYF   36 (38)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHHHHHHh
Confidence            34444444457899999999999999998774

>PRK00753 psbL photosystem II reaction center L; Provisional

Probab=94.93  E-value=0.05  Score=33.56  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=24.2

Q ss_pred             CCCccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995        231 SPESATNRQIRESLYILLIVLFAVSTLFAFYA  262 (265)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      +|-.+.-+--|-|||++|+.||.+.+||--|.
T Consensus         6 NpN~q~VELNRTSLy~GlLlifvl~vLFssYf   37 (39)
T PRK00753          6 NPNKQPVELNRTSLYLGLLLVFVLGILFSSYF   37 (39)
T ss_pred             CCCCCCceechhhHHHHHHHHHHHHHHHHhhc
Confidence            33334434457899999999999999998773

>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=94.77  E-value=0.034  Score=34.08  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=20.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995        238 RQIRESLYILLIVLFAVSTLFAFYA  262 (265)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      +-=|-|||++|+.||.+.+||--|.
T Consensus        11 ELNRTSLY~GLllifvl~vLFssyf   35 (37)
T PF02419_consen   11 ELNRTSLYWGLLLIFVLAVLFSSYF   35 (37)
T ss_dssp             E--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHhhhhh
Confidence            3346899999999999999998774

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....

>PF05825 PSP94: Beta-microseminoprotein (PSP-94); InterPro: IPR008735 This family consists of the mammalian specific protein beta-microseminoprotein

Probab=94.61  E-value=0.043  Score=41.46  Aligned_cols=39  Identities=26%  Similarity=0.755  Sum_probs=33.7

Q ss_pred             cCccccccCCeEEcCCcEEccCCCccceecCCeEEEeec
Q psy10995         75 EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQ  113 (265)
Q Consensus        75 ~~~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~  113 (265)
                      ....|.+.+|+.|.-|++|..+.|..|+|.+..+.|-..
T Consensus        14 ~~~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~   52 (94)
T PF05825_consen   14 SPNECKDWDGKKHPLNSTWKTDDCEECSCSEDGISCCST   52 (94)
T ss_dssp             STTCEEETTTEEEETTEEEEETTSEEEEEESSEEEEEES
T ss_pred             CCCccEeCCCcEEeCCCeECCCCCcEEEecCCceEeccC
Confidence            345798889999999999999999999999888888543

Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from Homo sapiens seminal plasma []. The exact function of this protein is unknown.; PDB: 2IZ4_A 1XHH_A 3IX0_C 2IZ3_A.

>PF05375 Pacifastin_I: Pacifastin inhibitor (LCMII); InterPro: IPR008037 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=93.81  E-value=0.063  Score=33.85  Aligned_cols=28  Identities=36%  Similarity=1.022  Sum_probs=23.4

Q ss_pred             CCcEEccCCCccceec-CCeEEEeecCCCC
Q psy10995         89 EGQHWTLNPCTDCTCR-EGKVLCYSQQCPA  117 (265)
Q Consensus        89 ~Ge~w~~~~C~~C~C~-~g~v~C~~~~Cp~  117 (265)
                      +|++|. +.|..|+|. +|.+.|.++.|++
T Consensus         4 pG~~~k-~dCN~C~C~~~G~~~CT~~~C~~   32 (39)
T PF05375_consen    4 PGSTFK-KDCNTCTCSSDGKWACTRKACPP   32 (39)
T ss_dssp             TTTEEE-ETTEEEEEBTTSSEEEE-SSSS-
T ss_pred             CCCeee-CCCCCCCCCCCCcCccCcccCcC
Confidence            588888 469999999 8999999999975

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of serine protease inhibitors belong to MEROPS inhibitor family I19, clan IW. They inhibit chymotrpsin, a peptidase belong to the S1 family (IPR001254 from INTERPRO) []. They were first isolated from Locusta migratoria migratoria(migratory locust). These were HI, LMCI-1 (PMP-D2) and LMCI-2 (PMP-C) [, , ]; five additional members SGPI-1 to 5 were identified in Schistocerca gregaria (desert locust) [, ], and a heterodimeric serine protease inhibitor (pacifastin) was isolated from the hemolymph of Pacifastacus leniusculus (Signal crayfish) []. Pacifastin is a 155kDa composed of two covalently linked subunits, which are separately encoded. The heavy chain of pacifastin (105 kDa) is related to transferrins, containing three transferrin lobes, two of which seem to be active for iron binding []. A number of the members of the transferrin family are also serine peptidases belong to MEROPS peptidase family S60 (IPR001156 from INTERPRO). The light chain of pacifastin (44 kDa) is the proteinase inhibitory subunit, and has nine cysteine-rich inhibitory domains that are homologous to each other. The locust inhibitors share a conserved array of six cysteine residues with the pacifastin light chain. The structure of members of this family reveal that they are comprised of a triple-stranded antiparallel beta-sheet connected by three disulphide bridges []. The biological function(s) of the locust inhibitors is (are) not fully understood. LMCI-1 and LMCI-2 were shown to inhibit the endogenous proteolytic activating cascade of prophenoloxidase []. Expression analysis shows that the genes encoding the SGPI precursors are differentially expressed in a time-, stage- and hormone-dependent manner.; GO: 0030414 peptidase inhibitor activity; PDB: 2VU8_I 1WO9_A 1GL1_K 1PMC_A 2XTT_A 2F91_B 1KJ0_A 1GL0_I 1KGM_A 3TVJ_I.

>PF05825 PSP94: Beta-microseminoprotein (PSP-94); InterPro: IPR008735 This family consists of the mammalian specific protein beta-microseminoprotein

Probab=89.57  E-value=0.35  Score=36.53  Aligned_cols=35  Identities=34%  Similarity=0.797  Sum_probs=29.7

Q ss_pred             ceecCCCeEeCCCCeee-cCCcceEECCCceEEeec
Q psy10995         10 ECQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLI   44 (265)
Q Consensus        10 ~cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~   44 (265)
                      .|...+|+.|.-|+.|. +.|..|+|.+..+.|-..
T Consensus        17 ~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~   52 (94)
T PF05825_consen   17 ECKDWDGKKHPLNSTWKTDDCEECSCSEDGISCCST   52 (94)
T ss_dssp             CEEETTTEEEETTEEEEETTSEEEEEESSEEEEEES
T ss_pred             ccEeCCCcEEeCCCeECCCCCcEEEecCCceEeccC
Confidence            45668999999999999 899999999877877543

Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from Homo sapiens seminal plasma []. The exact function of this protein is unknown.; PDB: 2IZ4_A 1XHH_A 3IX0_C 2IZ3_A.

>KOG1544|consensus

Probab=89.30  E-value=0.33  Score=44.55  Aligned_cols=57  Identities=25%  Similarity=0.659  Sum_probs=44.2

Q ss_pred             CCCCCcCC----CCCCCCCCccCccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCC
Q psy10995         58 NSTQCCPY----CPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCP  116 (265)
Q Consensus        58 ~~g~CCp~----C~~~~~~~~~~~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp  116 (265)
                      ...+|||.    |.+......+..+|+ .+|+.|.+|.... +.|..|+|.++.+.|.-..|-
T Consensus        87 ~~sDCCPDf~~fCRg~pp~~Qp~~gc~-~gg~~y~~G~t~~-~NCn~CTC~n~qWKCdq~~CL  147 (470)
T KOG1544|consen   87 TVSDCCPDFWDFCRGVPPPFQPIQGCM-HGGRIYPVGGTYW-DNCNRCTCQNRQWKCDQEPCL  147 (470)
T ss_pred             CCcccCcCHHHHhcCCCCCCCChhhcc-cCceecccCCeee-ccccceeecCCceecCCceee
Confidence            35678883    665433333446898 7999999999888 689999999999999987774

>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges

Probab=84.03  E-value=1.4  Score=28.34  Aligned_cols=30  Identities=27%  Similarity=0.626  Sum_probs=24.7

Q ss_pred             CCeEEcCCcEEcc---CCCccceecC--CeEEEee
Q psy10995         83 HGELKLEGQHWTL---NPCTDCTCRE--GKVLCYS  112 (265)
Q Consensus        83 ~g~~y~~Ge~w~~---~~C~~C~C~~--g~v~C~~  112 (265)
                      .++.|..|++|..   ..=..|+|..  |.+.|..
T Consensus         8 t~~~Y~ige~W~r~~~~~~~~C~C~G~~G~~~C~~   42 (43)
T cd00061           8 TGVFYRVGETWERPSEGHVLQCTCLGNRGEARCDP   42 (43)
T ss_pred             cccEEeCCCEEEeecCCeEEEEEEeCCCCceEEee
Confidence            4899999999984   3456899998  9999875

FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.

>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges

Probab=83.50  E-value=1.6  Score=28.10  Aligned_cols=28  Identities=29%  Similarity=0.803  Sum_probs=23.5

Q ss_pred             CeEeCCCCeee---c-CCcceEECC--CceEEee
Q psy10995         16 GVWRDDSEIWR---D-GCRECHCID--GREMCTL   43 (265)
Q Consensus        16 G~~y~~Ge~w~---~-~C~~C~C~~--G~v~C~~   43 (265)
                      |+.|+.|++|.   + .=..|+|..  |.+.|.+
T Consensus         9 ~~~Y~ige~W~r~~~~~~~~C~C~G~~G~~~C~~   42 (43)
T cd00061           9 GVFYRVGETWERPSEGHVLQCTCLGNRGEARCDP   42 (43)
T ss_pred             ccEEeCCCEEEeecCCeEEEEEEeCCCCceEEee
Confidence            89999999997   3 345799998  9999875

FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.

>KOG1544|consensus

Probab=81.22  E-value=1.1  Score=41.33  Aligned_cols=37  Identities=19%  Similarity=0.396  Sum_probs=33.9

Q ss_pred             eecCCCeEeCCCCeeecCCcceEECCCceEEeeccCC
Q psy10995         11 CQDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACP   47 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~~~C~~C~C~~G~v~C~~~~Cp   47 (265)
                      +|..+|+.|.+|.+..++|..|||+++...|....|-
T Consensus       111 gc~~gg~~y~~G~t~~~NCn~CTC~n~qWKCdq~~CL  147 (470)
T KOG1544|consen  111 GCMHGGRIYPVGGTYWDNCNRCTCQNRQWKCDQEPCL  147 (470)
T ss_pred             hcccCceecccCCeeeccccceeecCCceecCCceee
Confidence            5678999999999999999999999999999988884

>PF14828 Amnionless: Amnionless

Probab=80.93  E-value=0.85  Score=43.91  Aligned_cols=34  Identities=15%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             eEEEECCCCe-------e--cCCCCcCCCcccCCCCCCCCCCC
Q psy10995        195 TNCTCLHGGQ-------K--KCTASMCERKALEKGDTPTPPSG  228 (265)
Q Consensus       195 ~~C~C~~g~v-------~--~Cp~~~C~~p~~~~g~CC~~C~~  228 (265)
                      .-|.|.+..+       .  +|+.+.|.+|+...|+||+.|=.
T Consensus       192 ~gC~C~n~~~l~~ICs~v~~~C~~~~C~~pl~P~GhCC~iCGa  234 (437)
T PF14828_consen  192 SGCPCGNDEVLEWICSNVLQRCPKPHCRSPLRPEGHCCPICGA  234 (437)
T ss_pred             ccCccCcccchhhhhHHhhCcCCCCccCCCCCCCCCchhhcce
Confidence            5889976655       4  89999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	5e-08
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	3e-05
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	6e-04

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Length = 73

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 17/61 (27%), Positives = 20/61 (32%)

Query: 75  EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPR 134
           + A      G+   +   W   PC  C C  G VLC    C             G CCP 
Sbjct: 5   QEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPI 64

Query: 135 C 135
           C
Sbjct: 65  C 65

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Length = 73

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 15 DGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLS-CQHPIPANSTQCCPYCPDATSS 72
          DG   +D ++W+ + CR C C  G  +C  I C  +  C  P      +CCP CP   ++
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFG-ECCPICPADLAA 71

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Length = 67

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 88  LEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRP-PEPGTCCPRCAG 137
           L   + T NPC  C C   K  C  ++C   A        + G CC +C G
Sbjct: 17  LHIPNITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	99.38
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	99.36
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	99.02
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	98.9
2xtt_A	36	Protease inhibitor SGPI-1; hydrolase, catalytic me	95.93
3ejh_A	93	Fibronectin; fibronectin, protein complex, collage	95.74
1gl0_I	35	Protease inhibitor LCMI I; hydrolase/inhibitor, co	95.2
1o9a_A	93	Fibronectin; cell adhesion/complex, HOST-pathogen	95.16
3arc_L	37	Photosystem II reaction center protein L; PSII, me	94.94
2xtt_A	36	Protease inhibitor SGPI-1; hydrolase, catalytic me	94.75
3ix0_A	94	Beta-microseminoprotein; beta sheet, greek KEY mot	94.37
1xhh_A	91	Beta-microseminoprotein; beta srands, novel fold,	93.98
2cg7_A	90	Fibronectin; signaling protein, 2F13F1, acute phas	93.87
2rl0_A	89	Fibronectin; 4F15F1, beta zipper, staphylococcus a	93.42
1wo9_A	35	HI-1, trypsin inhibitor; hydrolase inhibitor; NMR	92.36
1gl0_I	35	Protease inhibitor LCMI I; hydrolase/inhibitor, co	92.32
3tvj_I	38	Protease inhibitor SGPI-2; in vitro evolution, spe	89.8
1wo9_A	35	HI-1, trypsin inhibitor; hydrolase inhibitor; NMR	89.28
3ix0_A	94	Beta-microseminoprotein; beta sheet, greek KEY mot	88.95
3ejh_A	93	Fibronectin; fibronectin, protein complex, collage	88.57
1xhh_A	91	Beta-microseminoprotein; beta srands, novel fold,	88.0
1o9a_A	93	Fibronectin; cell adhesion/complex, HOST-pathogen	81.95
2lk9_A	35	Bone marrow stromal antigen 2; membrane, micelle,	81.74

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=99.38  E-value=6.8e-13  Score=95.00  Aligned_cols=58  Identities=33%  Similarity=0.879  Sum_probs=54.0

Q ss_pred             eecCCCeEeCCCCeee-cCCcceEECCCceEEeeccCCCC-CCCCCCCCCCCCCcCCCCCC
Q psy10995         11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTL-SCQHPIPANSTQCCPYCPDA   69 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~~Cp~~-~C~~~~~~~~g~CCp~C~~~   69 (265)
                      .|.++|+.|.+|++|+ ++|++|+|++|.+.|.++.||++ +|+++.. .+|+|||+|++.
T Consensus         9 ~C~~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~-~~GeCCPvC~~~   68 (73)
T 1u5m_A            9 SCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEI-PFGECCPICPAD   68 (73)
T ss_dssp             CEESSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCC-CSSCSCCSCCSS
T ss_pred             CeeECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcc-cCCCcCCCCCCc
Confidence            4679999999999999 67999999999999999999998 9999987 899999999874

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=99.36  E-value=1.5e-12  Score=93.15  Aligned_cols=61  Identities=33%  Similarity=0.836  Sum_probs=56.5

Q ss_pred             CccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCC-CCCCCCCCCCCCCccccccc
Q psy10995         76 AAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAA-ACSNPRPPEPGTCCPRCAGA  138 (265)
Q Consensus        76 ~~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~~g~CCp~C~~~  138 (265)
                      ...|. ++|++|.+|++|++++|++|+|.+|.+.|..+.|+.+ .|+++.. .+|+|||+|+..
T Consensus         7 ~~~C~-~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~-~~GeCCPvC~~~   68 (73)
T 1u5m_A            7 AGSCV-QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEI-PFGECCPICPAD   68 (73)
T ss_dssp             CSCEE-SSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCC-CSSCSCCSCCSS
T ss_pred             CCCee-ECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcc-cCCCcCCCCCCc
Confidence            35798 8999999999999999999999999999999999998 9999876 899999999864

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=99.02  E-value=2.8e-10  Score=79.74  Aligned_cols=56  Identities=21%  Similarity=0.618  Sum_probs=49.0

Q ss_pred             ecCCCeEeCCCCeeecCCcceEECCCceEEeeccCCCCC--CCCCCCCCCCCCcCCCCC
Q psy10995         12 QDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLS--CQHPIPANSTQCCPYCPD   68 (265)
Q Consensus        12 c~~~G~~y~~Ge~w~~~C~~C~C~~G~v~C~~~~Cp~~~--C~~~~~~~~g~CCp~C~~   68 (265)
                      |.+||+.|.++..+.++|+.|+|++|.|.|.++.||+++  |.+++. .+|+|||+|.+
T Consensus        10 C~~eGe~~~~~~~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~-~~g~CCp~C~~   67 (67)
T 3bk3_C           10 CENEGEVLHIPNITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVK-QTGACCEKCKG   67 (67)
T ss_dssp             CSSTTCEECCTTTTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEEC-CTTCSSCEECC
T ss_pred             eEECCEEEeCCCccCCCcceeEecCCceEEccccCCCCccccCCccc-CCCCcCcCcCc
Confidence            779999998775334899999999999999999999998  998776 79999999863

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=98.90  E-value=1.1e-09  Score=76.69  Aligned_cols=57  Identities=33%  Similarity=0.760  Sum_probs=50.5

Q ss_pred             ccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCCC--CCCCCCCCCCCCccccc
Q psy10995         77 AVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAA--CSNPRPPEPGTCCPRCA  136 (265)
Q Consensus        77 ~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~~--C~~~~~~~~g~CCp~C~  136 (265)
                      ..|. ++|+.|.++. |..++|+.|+|.+|.+.|.++.||+++  |..+.+ .+|+|||+|.
T Consensus         8 ~~C~-~eGe~~~~~~-~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~-~~g~CCp~C~   66 (67)
T 3bk3_C            8 ASCE-NEGEVLHIPN-ITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVK-QTGACCEKCK   66 (67)
T ss_dssp             CBCS-STTCEECCTT-TTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEEC-CTTCSSCEEC
T ss_pred             CceE-ECCEEEeCCC-ccCCCcceeEecCCceEEccccCCCCccccCCccc-CCCCcCcCcC
Confidence            4687 8999998764 777999999999999999999999998  998765 7999999985

>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A

Probab=95.93  E-value=0.0074  Score=36.49  Aligned_cols=29  Identities=31%  Similarity=0.837  Sum_probs=26.5

Q ss_pred             CCCCeeecCCcceEEC-CCceEEeeccCCC
Q psy10995         20 DDSEIWRDGCRECHCI-DGREMCTLIACPT   48 (265)
Q Consensus        20 ~~Ge~w~~~C~~C~C~-~G~v~C~~~~Cp~   48 (265)
                      ..|++|.++|.+|+|. +|...|+++.||+
T Consensus         5 ~pG~~~~~dCNtC~C~~~G~W~CT~~~Cp~   34 (36)
T 2xtt_A            5 EPGQTKKQDCNTCRCGSDGVWACTRMGCPP   34 (36)
T ss_dssp             CTTCEEEETTEEEEECTTSCEEEECCCCCC
T ss_pred             CCCCEEECCCCccCCCCCCEEeeeCCcCCC
Confidence            4689999999999999 9999999999985

>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*

Probab=95.74  E-value=0.02  Score=41.80  Aligned_cols=72  Identities=24%  Similarity=0.479  Sum_probs=52.8

Q ss_pred             eecCCCeEeCCCCeee----cC-CcceEEC---CCceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-
Q psy10995         11 CQDEDGVWRDDSEIWR----DG-CRECHCI---DGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD-   81 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~----~~-C~~C~C~---~G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~-   81 (265)
                      -|..||+.|+-|++|.    .. =..|||.   +|...|....                   .             |.+ 
T Consensus         2 ~C~~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~~d-------------------~-------------C~D~   49 (93)
T 3ejh_A            2 QCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVD-------------------Q-------------CQDS   49 (93)
T ss_dssp             EEEETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEECS-------------------E-------------EECT
T ss_pred             ccEECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecCCc-------------------c-------------CCcc
Confidence            4788999999999997    22 3469997   3678887630                   1             332 


Q ss_pred             cCCeEEcCCcEEcc---CCCccceec---CCeEEEeecC
Q psy10995         82 FHGELKLEGQHWTL---NPCTDCTCR---EGKVLCYSQQ  114 (265)
Q Consensus        82 ~~g~~y~~Ge~w~~---~~C~~C~C~---~g~v~C~~~~  114 (265)
                      .+|+.|..|++|..   ..=..|+|.   .|++.|.++.
T Consensus        50 ~~g~~Y~IGetW~k~~~G~~~~CtC~G~G~G~w~Cep~~   88 (93)
T 3ejh_A           50 ETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQ   88 (93)
T ss_dssp             TTCCEEETTCEEEECCTTCCEEEEEEETTTTEEEEEECC
T ss_pred             CCCcEeecCCeEeeccCCeEEEeEEEcCCceeEEecccc
Confidence            47999999999994   234578886   4789999754

>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1

Probab=95.20  E-value=0.026  Score=33.66  Aligned_cols=29  Identities=28%  Similarity=0.756  Sum_probs=25.8

Q ss_pred             CCCCeeecCCcceEECC-CceEEeeccCCC
Q psy10995         20 DDSEIWRDGCRECHCID-GREMCTLIACPT   48 (265)
Q Consensus        20 ~~Ge~w~~~C~~C~C~~-G~v~C~~~~Cp~   48 (265)
                      ..|++|.+.|..|+|.+ |...|..+.|.+
T Consensus         5 ~PG~~~k~~CN~C~C~~~G~~~CTlk~C~P   34 (35)
T 1gl0_I            5 TPGQVKQQDCNTCTCTPTGVWGCTLMGCQP   34 (35)
T ss_dssp             CTTCEEECSSCEEEECTTSCEEEECCCCCC
T ss_pred             CCCcccccCCCccCCCCCCeEEEEeecccC
Confidence            46899999999999997 999999999974

>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A

Probab=95.16  E-value=0.029  Score=40.99  Aligned_cols=74  Identities=23%  Similarity=0.520  Sum_probs=49.5

Q ss_pred             eecCCCeEeCCCCeee---cCC-cceEECC-C-ceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-cC
Q psy10995         11 CQDEDGVWRDDSEIWR---DGC-RECHCID-G-REMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD-FH   83 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~---~~C-~~C~C~~-G-~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~-~~   83 (265)
                      .|..+|+.|+.|++|.   ... ..|+|.. | ...|...         |.   .++                .|.| ++
T Consensus         4 ~C~d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~sk---------P~---aee----------------~C~Dk~~   55 (93)
T 1o9a_A            4 GCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK---------PE---AEE----------------TCFDKYT   55 (93)
T ss_dssp             SCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC---------CC---SSC----------------EEEETTT
T ss_pred             eEEcCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecCC---------CC---ccc----------------ccccCCC
Confidence            4778999999999998   333 4699974 3 2667641         11   111                3543 47


Q ss_pred             CeEEcCCcEEcc--CC-Cccceec---CCeEEEee
Q psy10995         84 GELKLEGQHWTL--NP-CTDCTCR---EGKVLCYS  112 (265)
Q Consensus        84 g~~y~~Ge~w~~--~~-C~~C~C~---~g~v~C~~  112 (265)
                      |+.|..||+|..  +. =..|+|.   +|.+.|..
T Consensus        56 G~~Y~VGetwer~~~g~~~~CtC~G~G~G~~~Ct~   90 (93)
T 1o9a_A           56 GNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTI   90 (93)
T ss_dssp             TEEEETTCBCCEEETTEEECCEECCTTTCCEECBB
T ss_pred             ccEeecCCeEEeccCCeEEEEEEeCCCceEEEEEe
Confidence            999999999983  22 2367886   47788864

>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*

Probab=94.94  E-value=0.032  Score=33.15  Aligned_cols=25  Identities=32%  Similarity=0.572  Sum_probs=21.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995        238 RQIRESLYILLIVLFAVSTLFAFYA  262 (265)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      +--|-|||++|+.||.+.+||--|.
T Consensus        11 ELNRTSLy~GLLlifvlavlFssyf   35 (37)
T 3arc_L           11 ELNRTSLYLGLLLILVLALLFSSYF   35 (37)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eechhhHHHHHHHHHHHHHHhhhhc
Confidence            3346899999999999999998774

>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A

Probab=94.75  E-value=0.023  Score=34.29  Aligned_cols=28  Identities=32%  Similarity=0.827  Sum_probs=24.6

Q ss_pred             CCcEEccCCCccceec-CCeEEEeecCCCC
Q psy10995         89 EGQHWTLNPCTDCTCR-EGKVLCYSQQCPA  117 (265)
Q Consensus        89 ~Ge~w~~~~C~~C~C~-~g~v~C~~~~Cp~  117 (265)
                      +|++|. +.|.+|+|. +|.+.|.++.||.
T Consensus         6 pG~~~~-~dCNtC~C~~~G~W~CT~~~Cp~   34 (36)
T 2xtt_A            6 PGQTKK-QDCNTCRCGSDGVWACTRMGCPP   34 (36)
T ss_dssp             TTCEEE-ETTEEEEECTTSCEEEECCCCCC
T ss_pred             CCCEEE-CCCCccCCCCCCEEeeeCCcCCC
Confidence            577888 479999999 9999999999984

>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A

Probab=94.37  E-value=0.034  Score=40.99  Aligned_cols=37  Identities=30%  Similarity=0.790  Sum_probs=31.9

Q ss_pred             ccccccCCeEEcCCcEEccCCCccceecCCeEEEeec
Q psy10995         77 AVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQ  113 (265)
Q Consensus        77 ~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~  113 (265)
                      .+|.|.+|+.|.-|++|..+.|..|+|.+..+.|-..
T Consensus        16 ~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~   52 (94)
T 3ix0_A           16 RKCMDLKGNKHPINSEWQTDNCETCTCYETEISCCTL   52 (94)
T ss_dssp             -CEECTTSCEECTTCEEECTTSEEEEECSSEEEEEEC
T ss_pred             CcCCCCCCCEEeCCCEECCCCCcEeEecCCCceeccC
Confidence            5798889999999999999999999998777777643

>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A

Probab=93.98  E-value=0.045  Score=39.97  Aligned_cols=35  Identities=26%  Similarity=0.749  Sum_probs=31.8

Q ss_pred             cccccCCeEEcCCcEEccCCCccceecCCeEEEee
Q psy10995         78 VCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYS  112 (265)
Q Consensus        78 ~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~  112 (265)
                      .|.|.+|+.|.-|++|..+.|..|+|.+..+.|-.
T Consensus        14 ~C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~   48 (91)
T 1xhh_A           14 ECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCN   48 (91)
T ss_dssp             EEEETTTEEEECCCCEECSSSEEEEECSSEEEEEE
T ss_pred             CCCcCCCcEEeCCCeECCCCceEeEecCCCcEeec
Confidence            58888999999999999999999999988888775

>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A

Probab=93.87  E-value=0.11  Score=37.89  Aligned_cols=67  Identities=25%  Similarity=0.531  Sum_probs=49.1

Q ss_pred             CCCeEeCCCCeee---cC-CcceEECC---CceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccccCCeE
Q psy10995         14 EDGVWRDDSEIWR---DG-CRECHCID---GREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGEL   86 (265)
Q Consensus        14 ~~G~~y~~Ge~w~---~~-C~~C~C~~---G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~~~g~~   86 (265)
                      ++|..|+-|++|.   +. =..|+|..   |.+.|...                                .-|. .+|+.
T Consensus         9 ~tg~sY~VGe~Wer~~~~~~~~CtC~G~G~G~~~C~s~--------------------------------~~C~-~~g~~   55 (90)
T 2cg7_A            9 YTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIA--------------------------------NRCH-EGGQS   55 (90)
T ss_dssp             TTCCEEETTCEEEEEETTEEEEEEEEETTTTEEEEECT--------------------------------TEEE-ETTEE
T ss_pred             CCCeEeecCCeeeEccCCcEEEEEEecCCCceEEECCc--------------------------------ceee-eCCcE
Confidence            5799999999997   33 23488874   77777721                                0365 68999


Q ss_pred             EcCCcEEccC-----CCccceec---CCeEEEeec
Q psy10995         87 KLEGQHWTLN-----PCTDCTCR---EGKVLCYSQ  113 (265)
Q Consensus        87 y~~Ge~w~~~-----~C~~C~C~---~g~v~C~~~  113 (265)
                      |+.|++|...     .=..|+|.   .|++.|.++
T Consensus        56 Y~IGetW~k~~~~~~~~~~CtClGngkGew~C~p~   90 (90)
T 2cg7_A           56 YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI   90 (90)
T ss_dssp             EETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred             EecCceEeeccccCCceEEEEEeCCCcccEEeeeC
Confidence            9999999952     14589997   477999863

>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A

Probab=93.42  E-value=0.18  Score=36.57  Aligned_cols=67  Identities=27%  Similarity=0.572  Sum_probs=46.5

Q ss_pred             CCCeEeCCCCeee---cC-C-cceEEC---CCceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-cCC
Q psy10995         14 EDGVWRDDSEIWR---DG-C-RECHCI---DGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD-FHG   84 (265)
Q Consensus        14 ~~G~~y~~Ge~w~---~~-C-~~C~C~---~G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~-~~g   84 (265)
                      .+|..|+.|++|.   +. . ..|+|.   .|.+.|...               +                 .|.+ ..|
T Consensus         7 ~~g~~Y~VGe~wer~~~~g~~~~CTC~G~G~G~~~C~s~---------------~-----------------~C~D~~tG   54 (89)
T 2rl0_A            7 AAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSR---------------N-----------------RCNDQDTR   54 (89)
T ss_dssp             TTTEEEETTCEEEEEETTTEEEEEEEEETTTTEEEEECT---------------T-----------------EEEETTTT
T ss_pred             CCCcEEecCceeeEccCCCeEEEeEEcCCCcceEEeCCC---------------C-----------------cccccCCc
Confidence            4599999999998   23 4 359997   266766632               0                 2432 249


Q ss_pred             eEEcCCcEEccC----CCccceec---CCeEEEee
Q psy10995         85 ELKLEGQHWTLN----PCTDCTCR---EGKVLCYS  112 (265)
Q Consensus        85 ~~y~~Ge~w~~~----~C~~C~C~---~g~v~C~~  112 (265)
                      +.|+.|++|...    .=..|+|.   .|++.|.+
T Consensus        55 ~~Y~iGetW~k~~~~G~~~~C~C~GngrGew~Ce~   89 (89)
T 2rl0_A           55 TSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCER   89 (89)
T ss_dssp             EEEETTCEEEEECSSSCEEEEEEEETTTTEEEEEC
T ss_pred             eEEEcCceeecCccCCcEEEEEEeCCCceeEEecC
Confidence            999999999942    24578886   47888864

>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1

Probab=92.36  E-value=0.092  Score=31.42  Aligned_cols=29  Identities=31%  Similarity=0.649  Sum_probs=25.9

Q ss_pred             CCCCeeecCCcceEEC-CCceEEeeccCCC
Q psy10995         20 DDSEIWRDGCRECHCI-DGREMCTLIACPT   48 (265)
Q Consensus        20 ~~Ge~w~~~C~~C~C~-~G~v~C~~~~Cp~   48 (265)
                      ..|++++.+|.+|+|. +|...|....|+.
T Consensus         5 ~pG~ti~~dCNtCtC~~~g~W~CT~~~C~~   34 (35)
T 1wo9_A            5 TPGQTKKQDCNTCTCTPTGIWGCTRKACRT   34 (35)
T ss_dssp             CTTCEEEETTEEEEECTTSCEECCCSSSSC
T ss_pred             CCCCEEECCCCceECCCCCEEcCCCCCCCC
Confidence            4688999999999999 9999999998873

>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1

Probab=92.32  E-value=0.13  Score=30.56  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=24.3

Q ss_pred             CCcEEccCCCccceecC-CeEEEeecCCCC
Q psy10995         89 EGQHWTLNPCTDCTCRE-GKVLCYSQQCPA  117 (265)
Q Consensus        89 ~Ge~w~~~~C~~C~C~~-g~v~C~~~~Cp~  117 (265)
                      +|++|. +.|..|+|.+ |...|.++.|.+
T Consensus         6 PG~~~k-~~CN~C~C~~~G~~~CTlk~C~P   34 (35)
T 1gl0_I            6 PGQVKQ-QDCNTCTCTPTGVWGCTLMGCQP   34 (35)
T ss_dssp             TTCEEE-CSSCEEEECTTSCEEEECCCCCC
T ss_pred             CCcccc-cCCCccCCCCCCeEEEEeecccC
Confidence            588888 6899999986 899999998864

>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A

Probab=89.80  E-value=0.23  Score=30.09  Aligned_cols=29  Identities=28%  Similarity=0.842  Sum_probs=24.4

Q ss_pred             eCCCCeeecCCcceEECC-Cc-eEEeeccCC
Q psy10995         19 RDDSEIWRDGCRECHCID-GR-EMCTLIACP   47 (265)
Q Consensus        19 y~~Ge~w~~~C~~C~C~~-G~-v~C~~~~Cp   47 (265)
                      =..|++|.+.|.+|+|.. |. ..|..+.||
T Consensus         7 C~Pg~tFk~~CNtC~C~~dG~~a~CT~k~Cp   37 (38)
T 3tvj_I            7 CEPGTTFKDKCNTCRCGSDGKSAVCTKLWCN   37 (38)
T ss_dssp             CCTTCEEEETTEEEEECTTSSCEEEECCEEC
T ss_pred             cCCCCeeeccCceeECCCCCceeEeecccCC
Confidence            456899999999999984 65 589999887

>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1

Probab=89.28  E-value=0.2  Score=29.93  Aligned_cols=28  Identities=32%  Similarity=0.735  Sum_probs=24.0

Q ss_pred             CCcEEccCCCccceec-CCeEEEeecCCCC
Q psy10995         89 EGQHWTLNPCTDCTCR-EGKVLCYSQQCPA  117 (265)
Q Consensus        89 ~Ge~w~~~~C~~C~C~-~g~v~C~~~~Cp~  117 (265)
                      +|+++. .+|.+|+|. +|.+.|....|+.
T Consensus         6 pG~ti~-~dCNtCtC~~~g~W~CT~~~C~~   34 (35)
T 1wo9_A            6 PGQTKK-QDCNTCTCTPTGIWGCTRKACRT   34 (35)
T ss_dssp             TTCEEE-ETTEEEEECTTSCEECCCSSSSC
T ss_pred             CCCEEE-CCCCceECCCCCEEcCCCCCCCC
Confidence            577787 489999999 9999999988874

>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A

Probab=88.95  E-value=0.42  Score=35.03  Aligned_cols=33  Identities=27%  Similarity=0.712  Sum_probs=28.0

Q ss_pred             eecCCCeEeCCCCeee-cCCcceEECCCceEEee
Q psy10995         11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTL   43 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~   43 (265)
                      |-..+|+.|.-|+.|. +.|..|+|.+..+.|-.
T Consensus        18 C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~   51 (94)
T 3ix0_A           18 CMDLKGNKHPINSEWQTDNCETCTCYETEISCCT   51 (94)
T ss_dssp             EECTTSCEECTTCEEECTTSEEEEECSSEEEEEE
T ss_pred             CCCCCCCEEeCCCEECCCCCcEeEecCCCceecc
Confidence            4457999999999999 89999999977676654

>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*

Probab=88.57  E-value=0.67  Score=33.71  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=26.2

Q ss_pred             cccccCCeEEcCCcEEcc----CCCccceec---CCeEEEee
Q psy10995         78 VCMDFHGELKLEGQHWTL----NPCTDCTCR---EGKVLCYS  112 (265)
Q Consensus        78 ~C~~~~g~~y~~Ge~w~~----~~C~~C~C~---~g~v~C~~  112 (265)
                      .|+ .+|+.|..|++|..    ..=..|+|.   .|++.|..
T Consensus         2 ~C~-~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~   42 (93)
T 3ejh_A            2 QCI-VDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDP   42 (93)
T ss_dssp             EEE-ETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             ccE-ECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecC
Confidence            477 78999999999984    234578887   36788875

>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A

Probab=88.00  E-value=0.46  Score=34.60  Aligned_cols=34  Identities=32%  Similarity=0.768  Sum_probs=29.0

Q ss_pred             eecCCCeEeCCCCeee-cCCcceEECCCceEEeec
Q psy10995         11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLI   44 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~   44 (265)
                      |...+|+.+.-|+.|. ++|..|+|.+..+.|-..
T Consensus        15 C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~~   49 (91)
T 1xhh_A           15 CQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCNT   49 (91)
T ss_dssp             EEETTTEEEECCCCEECSSSEEEEECSSEEEEEEC
T ss_pred             CCcCCCcEEeCCCeECCCCceEeEecCCCcEeecC
Confidence            3349999999999999 899999999888777653

>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A

Probab=81.95  E-value=1  Score=32.76  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=24.0

Q ss_pred             cccccCCeEEcCCcEEcc---CCCccceecC-C-eEEEee
Q psy10995         78 VCMDFHGELKLEGQHWTL---NPCTDCTCRE-G-KVLCYS  112 (265)
Q Consensus        78 ~C~~~~g~~y~~Ge~w~~---~~C~~C~C~~-g-~v~C~~  112 (265)
                      .|. .+|+.|..|++|..   ..=..|+|.. + .+.|..
T Consensus         4 ~C~-d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~s   42 (93)
T 1o9a_A            4 GCY-DNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES   42 (93)
T ss_dssp             SCB-CSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEE
T ss_pred             eEE-cCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecC
Confidence            687 78999999999984   2334688863 2 266653

>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}

Probab=81.74  E-value=1.1  Score=26.28  Aligned_cols=19  Identities=5%  Similarity=0.457  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q psy10995        246 ILLIVLFAVSTLFAFYACR  264 (265)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~  264 (265)
                      ++|+||+++.|++.+|.-|
T Consensus        12 l~LLviV~LgV~LI~f~~k   30 (35)
T 2lk9_A           12 LVLLIIVILGVPLIIFTIK   30 (35)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhcchheEEeee
Confidence            5678888999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	2e-08
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	9e-06

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 18/54 (33%)

Query: 82  FHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 135
             G+   +   W   PC  C C  G VLC    C             G CCP C
Sbjct: 12  QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 9e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 15 DGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSS 72
          DG   +D ++W+ + CR C C  G  +C  I C  +           +CCP CP   ++
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	99.41
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	99.37
d2axtl1	37	Photosystem II reaction center protein L, PsbL {Th	95.22
d1o9aa1	44	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	90.05
d1e88a3	41	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	89.29
d1e88a3	41	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	85.45
d2cg7a1	43	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	85.26
d2cg7a1	43	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	85.06
d1o9aa1	44	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	84.75

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-13  Score=96.92  Aligned_cols=56  Identities=21%  Similarity=0.441  Sum_probs=51.1

Q ss_pred             cccccCCeEeeCCCEecCCCceEEEECCCCe----ecCCCC-cCCCcccCCCCCCCCCCCCC
Q psy10995        174 SCLLENGTLLHVGDTYFADPCTNCTCLHGGQ----KKCTAS-MCERKALEKGDTPTPPSGND  230 (265)
Q Consensus       174 ~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v----~~Cp~~-~C~~p~~~~g~CC~~C~~~~  230 (265)
                      +|+| +|++|++|++|++|+|+.|+|.+|.+    ++||++ .|.+++.++|+|||+|+++.
T Consensus         9 ~C~~-~g~~y~~Ge~w~~d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~~~~g~CCp~C~~~~   69 (73)
T d1u5ma_           9 SCVQ-DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADL   69 (73)
T ss_dssp             CEES-SSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCSSS
T ss_pred             CCeE-CCEEecCCCEECCCCCeEeEecCCeEEEeeccCCCCCCCCCceecCCCcCCcCCCCc
Confidence            5997 89999999999999999999999999    889986 58899999999999998754

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.4e-13  Score=93.80  Aligned_cols=62  Identities=34%  Similarity=0.842  Sum_probs=55.6

Q ss_pred             cCccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCC-CCCCCCCCCCCCCccccccc
Q psy10995         75 EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAA-ACSNPRPPEPGTCCPRCAGA  138 (265)
Q Consensus        75 ~~~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~~g~CCp~C~~~  138 (265)
                      +.++|. |+|++|.+|++|++|+|+.|+|.+|.+.|.++.||++ .|.++.+ .+|+|||+|+..
T Consensus         6 ~~~~C~-~~g~~y~~Ge~w~~d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~~-~~g~CCp~C~~~   68 (73)
T d1u5ma_           6 EAGSCV-QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEI-PFGECCPICPAD   68 (73)
T ss_dssp             CCSCEE-SSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCC-CSSCSCCSCCSS
T ss_pred             cCCCCe-ECCEEecCCCEECCCCCeEeEecCCeEEEeeccCCCCCCCCCcee-cCCCcCCcCCCC
Confidence            345798 9999999999999999999999999999999999987 5777766 799999999874

>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Photosystem II reaction center protein L, PsbL
family: PsbL-like
domain: Photosystem II reaction center protein L, PsbL
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=95.22  E-value=0.01  Score=33.60  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=20.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995        239 QIRESLYILLIVLFAVSTLFAFYA  262 (265)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      --|-|||..|+.||.+.+||.-|.
T Consensus        12 LNrtsLy~GlLlifvl~vLFssYf   35 (37)
T d2axtl1          12 LNRTSLYLGLLLILVLALLFSSYF   35 (37)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999998874

>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.11  Score=30.63  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=26.5

Q ss_pred             ceecCCCeEeCCCCeee-c---CCcceEECCCc--eEEeec
Q psy10995         10 ECQDEDGVWRDDSEIWR-D---GCRECHCIDGR--EMCTLI   44 (265)
Q Consensus        10 ~cc~~~G~~y~~Ge~w~-~---~C~~C~C~~G~--v~C~~~   44 (265)
                      .+|.-||+.|+-|++|+ .   .=..|||..|.  +.|..+
T Consensus         3 ~gC~dnGk~Y~v~~QWer~YlGs~l~CTC~Gg~~G~~C~sK   43 (44)
T d1o9aa1           3 PGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK   43 (44)
T ss_dssp             SSCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC
T ss_pred             CccccCCeEEecchhhhhhhcCCeEEEEEccCccceecCcC
Confidence            46889999999999998 2   33468888764  777643

>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.13  Score=29.66  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             eecCCCeEeCCCCeee----cCCcceEECCCceEEee
Q psy10995         11 CQDEDGVWRDDSEIWR----DGCRECHCIDGREMCTL   43 (265)
Q Consensus        11 cc~~~G~~y~~Ge~w~----~~C~~C~C~~G~v~C~~   43 (265)
                      |...+|..|..|..|.    ..-..|+|..+.|.|+.
T Consensus         4 C~Td~Gv~Y~~GmrW~~tQGskqMlCTClgnGisC~E   40 (41)
T d1e88a3           4 CVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQE   40 (41)
T ss_dssp             EEETTTEEECSSEEEEEESSSSEEEEEECSSSCCCEE
T ss_pred             cCccCCeEEecchhhhhhcCcceeEEeeeCCceeccc
Confidence            5677899999999997    34568999999888864

>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.17  Score=29.11  Aligned_cols=35  Identities=29%  Similarity=0.512  Sum_probs=28.0

Q ss_pred             cccccCCeEEcCCcEEcc---CCCccceecCCeEEEee
Q psy10995         78 VCMDFHGELKLEGQHWTL---NPCTDCTCREGKVLCYS  112 (265)
Q Consensus        78 ~C~~~~g~~y~~Ge~w~~---~~C~~C~C~~g~v~C~~  112 (265)
                      .|....|+.|..|.+|..   ..=..|+|..+.|.|..
T Consensus         3 ~C~Td~Gv~Y~~GmrW~~tQGskqMlCTClgnGisC~E   40 (41)
T d1e88a3           3 HCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQE   40 (41)
T ss_dssp             CEEETTTEEECSSEEEEEESSSSEEEEEECSSSCCCEE
T ss_pred             ccCccCCeEEecchhhhhhcCcceeEEeeeCCceeccc
Confidence            466568999999999984   45678999988887764

>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.26  E-value=0.44  Score=28.16  Aligned_cols=33  Identities=24%  Similarity=0.578  Sum_probs=25.2

Q ss_pred             ccccCCeEEcCCcEEcc--C---CCccceec---CCeEEEee
Q psy10995         79 CMDFHGELKLEGQHWTL--N---PCTDCTCR---EGKVLCYS  112 (265)
Q Consensus        79 C~~~~g~~y~~Ge~w~~--~---~C~~C~C~---~g~v~C~~  112 (265)
                      |. .+|+.|+.|++|..  +   .=..|+|.   .|++.|.+
T Consensus         2 C~-d~g~~Y~VGe~Wer~~d~~g~m~~CtC~G~GrG~~~Cd~   42 (43)
T d2cg7a1           2 CH-EGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKP   42 (43)
T ss_dssp             EE-ETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEE
T ss_pred             ce-eCCcEEEcCCEEeeccccCCcEEEEEEecCCcccEEecc
Confidence            66 48999999999984  2   22469997   47899975

>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.43  Score=28.23  Aligned_cols=33  Identities=30%  Similarity=0.627  Sum_probs=24.4

Q ss_pred             ecCCCeEeCCCCeee---cC--C-cceEEC---CCceEEeec
Q psy10995         12 QDEDGVWRDDSEIWR---DG--C-RECHCI---DGREMCTLI   44 (265)
Q Consensus        12 c~~~G~~y~~Ge~w~---~~--C-~~C~C~---~G~v~C~~~   44 (265)
                      |..+|+.|+-|++|.   +.  = ..|+|.   .|...|.++
T Consensus         2 C~d~g~~Y~VGe~Wer~~d~~g~m~~CtC~G~GrG~~~Cd~~   43 (43)
T d2cg7a1           2 CHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI   43 (43)
T ss_dssp             EEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred             ceeCCcEEEcCCEEeeccccCCcEEEEEEecCCcccEEeccC
Confidence            455899999999998   21  2 369997   467888764

>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.24  Score=29.16  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             ccccccCCeEEcCCcEEcc---CCCccceecCCe--EEEeec
Q psy10995         77 AVCMDFHGELKLEGQHWTL---NPCTDCTCREGK--VLCYSQ  113 (265)
Q Consensus        77 ~~C~~~~g~~y~~Ge~w~~---~~C~~C~C~~g~--v~C~~~  113 (265)
                      .+|. .+|+.|..|+.|..   ..=-+|+|..|.  +.|..+
T Consensus         3 ~gC~-dnGk~Y~v~~QWer~YlGs~l~CTC~Gg~~G~~C~sK   43 (44)
T d1o9aa1           3 PGCY-DNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK   43 (44)
T ss_dssp             SSCB-CSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC
T ss_pred             Cccc-cCCeEEecchhhhhhhcCCeEEEEEccCccceecCcC
Confidence            4788 79999999999994   222367887654  888753