Psyllid ID: psy10996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MNESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Secondary Structure (PSIPRED)
cccEEccccEEccccccEEEEccccEEEccccccccccccccccccccccccccEEEcccEEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEccEEEccccEEcccccEEEEEccccEEEEEccccccccccccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEcccEEEEccccccccccccccccccccccccEEEEEcccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEcccccccccccEEEEEcccEEEEEEccccccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mnescengtswlsadceeckcergikfcskvecpklpeactkseigqccpvcldctcregkvlcysqqcpaaacsnprppepgtccprcagadEITALVvendgndkdcgdallpkpadlvpsgctvgnvtyqenqewrldactscvckdrshhctqricsvtcsnpmtipnqccplclgectnsvrfipit
Flexible Loop (DISEMBL)
mnescengtswlsaDCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Low Complexity Region (SEG)
MNESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Disordered region (IsUnstruct)
*********SWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAAC********GTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIP**
Disordered Region (DISOPRED)
MNESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNS*RFIP**
Disordered Region (DISEMBL)
**********WLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Disordered Region (DISPRO)
**********WLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAG*******************DALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q9IBG7	2327	Kielin/chordin-like prote	N/A	N/A	0.75	0.061	0.300	6e-11
Q9JLL0	1037	Cysteine-rich motor neuro	yes	N/A	0.791	0.146	0.306	1e-09
Q9NZV1	1036	Cysteine-rich motor neuro	yes	N/A	0.536	0.099	0.307	3e-09
Q7T3Q2	1027	Cysteine-rich motor neuro	no	N/A	0.848	0.158	0.266	1e-08
Q8AWW5	1048	Cysteine-rich motor neuro	yes	N/A	0.541	0.099	0.312	9e-08
Q3U492	1550	Kielin/chordin-like prote	no	N/A	0.781	0.096	0.268	4e-06
Q96DN2	955	von Willebrand factor C a	no	N/A	0.937	0.188	0.271	8e-06
Q90ZD5	456	Chordin-like protein 1 OS	no	N/A	0.593	0.25	0.294	1e-05
Q6ZWJ8	1503	Kielin/chordin-like prote	no	N/A	0.916	0.117	0.260	2e-05
Q80T14	4010	Extracellular matrix prot	no	N/A	0.645	0.030	0.237	2e-05

>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 82/203 (40%), Gaps = 59/203 (29%)

Query: 13   SADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCC---PVC----------------- 52
            S  C+ C C  G   C+ V CP +  A   ++ GQCC   PVC                 
Sbjct: 1574 SDPCQRCVCLDGSVTCTHVVCPYVSCANPITKPGQCCRECPVCRYQGKEFSEGAHWVPHT 1633

Query: 53   ---LDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDC 109
               L CTC  G V C   QCP   C+  +  +PGTCCPRC                    
Sbjct: 1634 DPCLKCTCSNGHVDCEPPQCPPLPCTQ-QVTDPGTCCPRC-------------------- 1672

Query: 110  GDALLPKPADLVPSGCTVGNVTYQENQEW--RLDACTSCVCKDRSHHCTQRICSVTCSNP 167
                          GC      Y++N  W    D C SC+C D    C++  C  +C+N 
Sbjct: 1673 -------------RGCVYNGREYRDNSNWLSSSDHCMSCMCVDGVTTCSKLQCITSCTNQ 1719

Query: 168  MTIPNQCCPLCLGECTNSVRFIP 190
            +TIP +CCP+C    +NS  ++P
Sbjct: 1720 ITIPGECCPVCADCISNSKVYLP 1742

May be a signaling molecule that mediates inductive activities of the embryonic midline. Able to dorsalize mesoderm.
Xenopus laevis (taxid: 8355)

>sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein OS=Mus musculus GN=Crim1 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 84/215 (39%), Gaps = 63/215 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEI--GQCCPVCLD--------- 54
           +N  SW    C EC C  G + C+ + CP    AC    I  GQCCP C D         
Sbjct: 617 KNEESWHDG-CRECYCHNGKEMCALITCPV--PACGNPTIRSGQCCPSCTDDFVVQKPEL 673

Query: 55  ---------------------------CTCREGKVLCYSQQCPAAACSNPRPPEPGTCCP 87
                                      CTC  G+VLC ++ CP   C NP   +  +CCP
Sbjct: 674 STPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQ-DSCCP 732

Query: 88  RCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCT--VGNVTYQENQEWRLDACTS 145
           +C   D        N+                 VPS C    G++ +   + W+ DACTS
Sbjct: 733 QCTD-DPPQPSTSHNES----------------VPSYCRNDEGDI-FLAAESWKPDACTS 774

Query: 146 CVCKDRSHHCTQRIC-SVTCSNPMTIPNQCCPLCL 179
           CVC D +  C    C SV C  P+    QCCP CL
Sbjct: 775 CVCVDSAISCYSESCPSVACERPVLRKGQCCPYCL 809

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. May play a role in capillary formation and maintenance during angiogenesis. Modulates BMP activity by affecting its processing and delivery to the cell surface.

Mus musculus (taxid: 10090)

>sp|Q9NZV1|CRIM1_HUMAN Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 24/127 (18%)

Query: 52  CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGD 111
           C  C C+ G  +C++ QC    C     PE G CCP C                     D
Sbjct: 354 CRFCRCQGGVAICFTAQCGEINCERYYVPE-GECCPVCE--------------------D 392

Query: 112 ALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIP 171
            + P      P+GC    +       WR D CT C C +   HC   +C  TC+NP+ +P
Sbjct: 393 PVYPFNN---PAGCYANGLILAHGDRWREDDCTFCQCVNGERHCVATVCGQTCTNPVKVP 449

Query: 172 NQCCPLC 178
            +CCP+C
Sbjct: 450 GECCPVC 456

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. May play a role in capillary formation and maintenance during angiogenesis. Modulates BMP activity by affecting its processing and delivery to the cell surface.

Homo sapiens (taxid: 9606)

>sp|Q7T3Q2|CRIM1_DANRE Cysteine-rich motor neuron 1 protein OS=Danio rerio GN=crim1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 81/218 (37%), Gaps = 55/218 (25%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVC------------- 52
           ENG SW    C +C C  G + C+ + CP  P        G CCP C             
Sbjct: 612 ENGQSWHDG-CRDCYCHAGREMCALISCPVPPCDNPTIRPGHCCPTCPEESSSHKPELSE 670

Query: 53  -----------------------LDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 89
                                    CTC  G+VLC ++ CP   C +P   +  +CCP C
Sbjct: 671 ASVCLAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCHSPIRTQ-DSCCPHC 729

Query: 90  AGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCK 149
              D +T     ND     C +    +  D+           +   + W+ + C+SCVC 
Sbjct: 730 PD-DPVTPQTPSNDSMPSYCRN----EDGDI-----------FLAAESWKPNVCSSCVCL 773

Query: 150 DRSHHCTQRIC-SVTCSNPMTIPNQCCPLCLGECTNSV 186
           D +  C    C  V C+ P+    QCCP CL     +V
Sbjct: 774 DGAISCFSESCPPVNCARPVLRKGQCCPYCLDATPRAV 811

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival.

Danio rerio (taxid: 7955)

>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein OS=Gallus gallus GN=CRIM1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 51  VCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCG 110
            C  C C+ G  +C+S QC    C     PE G CCP C    E     V N        
Sbjct: 365 ACRFCRCQGGVSICFSAQCGELHCDRYYVPE-GECCPVC----EDPVYPVNN-------- 411

Query: 111 DALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTI 170
                      P+GC            WR D CT C C + + HC    C  +C NP+ +
Sbjct: 412 -----------PAGCYANGQIQAHGDRWREDDCTFCQCINGNPHCVATACGQSCLNPVKV 460

Query: 171 PNQCCPLC 178
           P +CCP+C
Sbjct: 461 PGECCPVC 468

May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival.

Gallus gallus (taxid: 9031)

>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 79/216 (36%), Gaps = 66/216 (30%)

Query: 7   NGTSWLSAD--CEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCT-------- 56
           NG ++   D  C+ C CE G   CS + CP    A  ++  GQCCP C DC         
Sbjct: 496 NGQNFTDVDSPCQTCYCEDGTVRCSLINCPFTTCAKPQNGPGQCCPKCPDCILEAQVFVD 555

Query: 57  ---------------CREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVE 101
                          C+EG+  C  + CP+A C +P    PGTCC               
Sbjct: 556 GERFPHPRDPCQECWCQEGQAHCQLRACPSAPCVHPL---PGTCC--------------- 597

Query: 102 NDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEW--RLDACTSCVCKDRSHHCTQRI 159
                 DC             +GC  G   Y    ++    D C  C C   +  C  R 
Sbjct: 598 ----KNDC-------------TGCAFGGKEYPNGADFPHPTDPCRLCRCLSGNVQCLARR 640

Query: 160 C-SVTCSNPMTIPNQCCPLC---LGECTNSVRFIPI 191
           C  ++C  P+  P  CCP C     +C  S   +P+
Sbjct: 641 CPPLSCPQPVLTPGDCCPQCPDAPADCPQSGNMVPV 676

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Mus musculus (taxid: 10090)

>sp|Q96DN2|VWCE_HUMAN von Willebrand factor C and EGF domain-containing protein OS=Homo sapiens GN=VWCE PE=2 SV=2

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 90/247 (36%), Gaps = 67/247 (27%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLD----------- 54
           E+ + W    C +C CE G   C KV C         S  G CCP C             
Sbjct: 394 ESRSRWTEPGCSQCWCEDGKVTCEKVRCEAACSHPIPSRDGGCCPSCTGCFHSGVVRAEG 453

Query: 55  ------------CTCREGKVLCYSQQCPAAACSNPRPPEPGTCCP-RC------------ 89
                       C C  G V C S +CP+  C  P   +  TC P RC            
Sbjct: 454 DVFSPPNENCTVCVCLAGNVSCISPECPSGPCQTPPQTDCCTCVPVRCYFHGRWYADGAV 513

Query: 90  --AGADEITALVVENDGNDKDCGDALLPKPADLVP---------------------SGCT 126
              G DE T  V +N   + +C  + +P P    P                     +GC+
Sbjct: 514 FSGGGDECTTCVCQN--GEVEC--SFMPCPELACPREEWRLGPGQCCFTCQEPTPSTGCS 569

Query: 127 VGN--VTYQENQEWRL-DACTSCVCK-DRSHHCTQRICSVTCSNPMTIPNQCCPLCLGEC 182
           + +  V +   Q W   D C  C+C+ D S  C +  C  +C +P+ IP QCCP C   C
Sbjct: 570 LDDNGVEFPIGQIWSPGDPCELCICQADGSVSCKRTDCVDSCPHPIRIPGQCCPDCSAGC 629

Query: 183 TNSVRFI 189
           T + R  
Sbjct: 630 TYTGRIF 636

May be a regulatory element in the beta-catenin signaling pathway and a target for chemoprevention of hapatocellular carcinoma.

Homo sapiens (taxid: 9606)

>sp|Q90ZD5|CRDL1_CHICK Chordin-like protein 1 OS=Gallus gallus GN=CHRDL1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 51  VCLDCTCRE-GKVLCYSQQCPAAACSNPRPPEPGTCCPRC------AGADEITALVVEND 103
            C++C C E G VLC   +CP+  C +P    P  CCPRC      + + +IT    E +
Sbjct: 62  YCVNCLCSENGNVLCSRIRCPSLHCPSP-VHVPQLCCPRCPEDSLFSVSSKITGKSCEYN 120

Query: 104 GNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SV 162
           G     G+               V    +Q  Q    + C  C C + + +C  + C  +
Sbjct: 121 GTTYHHGEMF-------------VAEGLFQNRQ---ANQCAQCSCSEGNVYCGLKTCPKL 164

Query: 163 TCSNPMTIPNQCCPLCLGE 181
           TCS P+++P  CCP+C G+
Sbjct: 165 TCSFPVSVPESCCPVCRGD 183

Seems to antagonize the function of BMP4 by binding to it and preventing its interaction with receptors.

Gallus gallus (taxid: 9031)

>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 80/230 (34%), Gaps = 54/230 (23%)

Query: 2   NESCENGTSWL--SADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLDCT--- 56
            E    G  W      C  C C+ G+  C  V CP  P        G CCP C  CT   
Sbjct: 370 GEEFAEGVQWEPDGRPCTACVCQDGVPKCGAVLCPPAPCQHPTQPPGACCPSCDSCTYHS 429

Query: 57  --------------------CREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAG--ADE 94
                               C++G V C    CP   C+ P+   PG CCPRC     +E
Sbjct: 430 QVYANGQNFTDADSPCHACHCQDGTVTCSLVDCPPTTCARPQ-SGPGQCCPRCPDCILEE 488

Query: 95  ITALVVENDGNDKD------CGDALL---PKPADLVP--------------SGCTVGNVT 131
              +  E+  + +D      C +      P+P    P              SGC  G   
Sbjct: 489 EVFVDGESFSHPRDPCQECRCQEGHAHCQPRPCPRAPCAHPLPGTCCPNDCSGCAFGGKE 548

Query: 132 YQENQEWRL--DACTSCVCKDRSHHCTQRIC-SVTCSNPMTIPNQCCPLC 178
           Y    ++    D C  C C   +  C  R C  + C  P+ +P +CCP C
Sbjct: 549 YPSGADFPHPSDPCRLCRCLSGNVQCLARRCVPLPCPEPVLLPGECCPQC 598

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Homo sapiens (taxid: 9606)

>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus musculus GN=Fras1 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 64/185 (34%), Gaps = 61/185 (32%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKL---PEACTKSEIGQCCPVCL--------- 53
           E+GT W SA C  C C  G   CS  +C  L   P+       G+CCP+C+         
Sbjct: 102 EHGTEWASAPCTVCSCTHGEVRCSHQQCTPLSCGPQELEFLAEGRCCPICVGTGKPCSYD 161

Query: 54  ----------------DCTCREGKVLCYSQQCPAAACSNPR--PPEPGTCCPRCAGADEI 95
                            C CR G   C++ QC    C+        PG CC +C+     
Sbjct: 162 GHVFQDGEDWQLSRCAKCVCRNGLTQCFAAQCQPLFCNQDEIVVRVPGKCCSQCSA---- 217

Query: 96  TALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHC 155
                                        C+     Y+  ++W+ DACT C+C      C
Sbjct: 218 ---------------------------RSCSTAGQVYEHGEQWKEDACTLCMCDQGQVRC 250

Query: 156 TQRIC 160
            +++C
Sbjct: 251 HKQVC 255

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
193207066	904	Protein CRM-1, isoform d [Caenorhabditis	0.854	0.181	0.301	5e-10
193207062	900	Protein CRM-1, isoform a [Caenorhabditis	0.854	0.182	0.301	6e-10
392920303	875	Protein CRM-1, isoform f [Caenorhabditis	0.854	0.187	0.301	6e-10
193207064	966	Protein CRM-1, isoform b [Caenorhabditis	0.854	0.169	0.301	6e-10
148238074	2327	kielin/chordin-like protein precursor [X	0.75	0.061	0.300	3e-09
324501892	982	Cysteine-rich motor neuron 1 protein [As	0.822	0.160	0.296	3e-09
432939965	858	PREDICTED: cysteine-rich motor neuron 1	0.541	0.121	0.354	4e-09
327284718	1675	PREDICTED: kielin/chordin-like protein-l	0.755	0.086	0.305	1e-08
281182663	1037	cysteine rich transmembrane BMP regulato	0.791	0.146	0.306	1e-08
242018314	590	cysteine-rich motor neuron, putative [Pe	0.822	0.267	0.271	1e-08

>gi|193207066|ref|NP_741618.2| Protein CRM-1, isoform d [Caenorhabditis elegans] gi|172051531|emb|CAD44089.2| Protein CRM-1, isoform d [Caenorhabditis elegans]

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ----CCPVCLD------- 54
            +G  W S  C  C CE   +FCS + CP  P  C   +  Q    CCP C+D       
Sbjct: 462 RDGGEWWSDGCRHCFCENKQEFCSLISCPTKPSDCADEKWVQKEDECCPSCIDQKKKPKS 521

Query: 55  ------------------------------------CTCREGKVLCYSQQCPAAACSNPR 78
                                               CTCR G VLC + +CP  AC NP 
Sbjct: 522 SNSLAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRVGHVLCRTTECPPIACPNPE 581

Query: 79  PPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEW 138
                 CCP C          VEN  N+K  GD ++    D   +   VG+        W
Sbjct: 582 YQNEEDCCPTCPEQK------VENTKNEK--GDTIV--CTDDAGTAHIVGS-------SW 624

Query: 139 RLDACTSCVCK-DRSHHCTQRIC--SVTC-SNPMTIPNQCCPLCLGECTNSV 186
           R D CTSCVC  + S  C +  C  S+ C  NP+ I  +CCP+C    ++S 
Sbjct: 625 RQDDCTSCVCSAEGSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSA 676

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|193207062|ref|NP_741617.2| Protein CRM-1, isoform a [Caenorhabditis elegans] gi|172051529|emb|CAA94886.4| Protein CRM-1, isoform a [Caenorhabditis elegans]

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ----CCPVCLD------- 54
            +G  W S  C  C CE   +FCS + CP  P  C   +  Q    CCP C+D       
Sbjct: 462 RDGGEWWSDGCRHCFCENKQEFCSLISCPTKPSDCADEKWVQKEDECCPSCIDQKKKPKS 521

Query: 55  ------------------------------------CTCREGKVLCYSQQCPAAACSNPR 78
                                               CTCR G VLC + +CP  AC NP 
Sbjct: 522 SNSLAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRVGHVLCRTTECPPIACPNPE 581

Query: 79  PPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEW 138
                 CCP C          VEN  N+K  GD ++    D   +   VG+        W
Sbjct: 582 YQNEEDCCPTCPEQK------VENTKNEK--GDTIV--CTDDAGTAHIVGS-------SW 624

Query: 139 RLDACTSCVCK-DRSHHCTQRIC--SVTC-SNPMTIPNQCCPLCLGECTNSV 186
           R D CTSCVC  + S  C +  C  S+ C  NP+ I  +CCP+C    ++S 
Sbjct: 625 RQDDCTSCVCSAEGSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSA 676

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|392920303|ref|NP_001256210.1| Protein CRM-1, isoform f [Caenorhabditis elegans] gi|306438309|emb|CBW48336.1| Protein CRM-1, isoform f [Caenorhabditis elegans]

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ----CCPVCLD------- 54
            +G  W S  C  C CE   +FCS + CP  P  C   +  Q    CCP C+D       
Sbjct: 437 RDGGEWWSDGCRHCFCENKQEFCSLISCPTKPSDCADEKWVQKEDECCPSCIDQKKKPKS 496

Query: 55  ------------------------------------CTCREGKVLCYSQQCPAAACSNPR 78
                                               CTCR G VLC + +CP  AC NP 
Sbjct: 497 SNSLAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRVGHVLCRTTECPPIACPNPE 556

Query: 79  PPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEW 138
                 CCP C          VEN  N+K  GD ++    D   +   VG+        W
Sbjct: 557 YQNEEDCCPTCPEQK------VENTKNEK--GDTIV--CTDDAGTAHIVGS-------SW 599

Query: 139 RLDACTSCVCK-DRSHHCTQRIC--SVTC-SNPMTIPNQCCPLCLGECTNSV 186
           R D CTSCVC  + S  C +  C  S+ C  NP+ I  +CCP+C    ++S 
Sbjct: 600 RQDDCTSCVCSAEGSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSA 651

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|193207064|ref|NP_741616.2| Protein CRM-1, isoform b [Caenorhabditis elegans] gi|172051530|emb|CAD44087.2| Protein CRM-1, isoform b [Caenorhabditis elegans]

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ----CCPVCLD------- 54
            +G  W S  C  C CE   +FCS + CP  P  C   +  Q    CCP C+D       
Sbjct: 528 RDGGEWWSDGCRHCFCENKQEFCSLISCPTKPSDCADEKWVQKEDECCPSCIDQKKKPKS 587

Query: 55  ------------------------------------CTCREGKVLCYSQQCPAAACSNPR 78
                                               CTCR G VLC + +CP  AC NP 
Sbjct: 588 SNSLAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRVGHVLCRTTECPPIACPNPE 647

Query: 79  PPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEW 138
                 CCP C          VEN  N+K  GD ++    D   +   VG+        W
Sbjct: 648 YQNEEDCCPTCPEQK------VENTKNEK--GDTIV--CTDDAGTAHIVGS-------SW 690

Query: 139 RLDACTSCVCK-DRSHHCTQRIC--SVTC-SNPMTIPNQCCPLCLGECTNSV 186
           R D CTSCVC  + S  C +  C  S+ C  NP+ I  +CCP+C    ++S 
Sbjct: 691 RQDDCTSCVCSAEGSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSA 742

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|148238074|ref|NP_001079355.1| kielin/chordin-like protein precursor [Xenopus laevis] gi|82174758|sp|Q9IBG7.1|KCP_XENLA RecName: Full=Kielin/chordin-like protein; AltName: Full=Cysteine-rich motor neuron 2 protein; Short=CRIM-2; AltName: Full=Kielin; Flags: Precursor gi|7768636|dbj|BAA95483.1| Kielin [Xenopus laevis]

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 82/203 (40%), Gaps = 59/203 (29%)

Query: 13   SADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCC---PVC----------------- 52
            S  C+ C C  G   C+ V CP +  A   ++ GQCC   PVC                 
Sbjct: 1574 SDPCQRCVCLDGSVTCTHVVCPYVSCANPITKPGQCCRECPVCRYQGKEFSEGAHWVPHT 1633

Query: 53   ---LDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDC 109
               L CTC  G V C   QCP   C+  +  +PGTCCPRC                    
Sbjct: 1634 DPCLKCTCSNGHVDCEPPQCPPLPCTQ-QVTDPGTCCPRC-------------------- 1672

Query: 110  GDALLPKPADLVPSGCTVGNVTYQENQEW--RLDACTSCVCKDRSHHCTQRICSVTCSNP 167
                          GC      Y++N  W    D C SC+C D    C++  C  +C+N 
Sbjct: 1673 -------------RGCVYNGREYRDNSNWLSSSDHCMSCMCVDGVTTCSKLQCITSCTNQ 1719

Query: 168  MTIPNQCCPLCLGECTNSVRFIP 190
            +TIP +CCP+C    +NS  ++P
Sbjct: 1720 ITIPGECCPVCADCISNSKVYLP 1742

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324501892|gb|ADY40838.1| Cysteine-rich motor neuron 1 protein [Ascaris suum]

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 87/219 (39%), Gaps = 61/219 (27%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEAC----TKSEIGQCC------PV---- 51
            +   W +  C  C CE+  +FCS + CP+ P++C     K   G+CC      PV    
Sbjct: 539 RDSGEWWNDGCRHCFCEQKHEFCSLLTCPERPDSCPIEQWKRLEGECCAKCAADPVNAIA 598

Query: 52  ------------------------CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCP 87
                                   C  CTCR G VLC   +CP  AC +P P E   CCP
Sbjct: 599 KHEHTVCQSAGRLFVDGETWQLAPCTSCTCRVGNVLCRVVECPPIACPDPIPDESNQCCP 658

Query: 88  RCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGN-VTYQENQEWRLDACTSC 146
           +C             + N+        P  A LV   CT  N + + E   WR D CTSC
Sbjct: 659 KCP------------ETNNSSISPLSRPLGATLV---CTDDNDIAHMEGSSWRTDECTSC 703

Query: 147 VC----KDRSHHCTQRICSVT---CSNPMTIPNQCCPLC 178
            C    +D    C +  C+        P+TI  +CCP+C
Sbjct: 704 RCVADGEDTKIECFRENCAELENCLGMPLTIKGRCCPVC 742

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|432939965|ref|XP_004082650.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Oryzias latipes]

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 54/127 (42%), Gaps = 23/127 (18%)

Query: 52  CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGD 111
           C  C CR G   C   +C    C N   PE G CCP C G     A VV+N         
Sbjct: 315 CWLCQCRGGISFCSKAECAELDCENFYVPE-GECCPVCIGK---PAYVVKN--------- 361

Query: 112 ALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNPMTIP 171
                     P+ C V N      ++W+ D CT C C D   HCT   C  +C NP+ IP
Sbjct: 362 ----------PASCWVNNKLRAHEEQWKEDDCTFCQCVDGDPHCTAMACKQSCQNPVKIP 411

Query: 172 NQCCPLC 178
            +CCP C
Sbjct: 412 GECCPFC 418

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327284718|ref|XP_003227083.1| PREDICTED: kielin/chordin-like protein-like [Anolis carolinensis]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 86/203 (42%), Gaps = 58/203 (28%)

Query: 2    NESCENGTSWL--SADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVC------- 52
              S  NG ++   S  C+ C C  G   C+ V CP++P A  + E GQCCP C       
Sbjct: 1306 EHSYANGQTFTPPSDPCKRCSCLHGNVLCAPVVCPQVPCANPRHEPGQCCPQCPAICQHA 1365

Query: 53   -------------LD----CTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEI 95
                         LD    C+C +G V C   QCP  +CS+P   EPG CCPRC G    
Sbjct: 1366 GREYAEGKQWVSSLDPCQRCSCTDGNVRCEMIQCPPMSCSHPV-TEPGVCCPRCKGCT-- 1422

Query: 96   TALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHC 155
                   +G ++  G + L   +  VP                    C +C+C D    C
Sbjct: 1423 ------YEGRERPDGSSWL---SLAVP--------------------CMACMCVDGVATC 1453

Query: 156  TQRICSVTCSNPMTIPNQCCPLC 178
             +  C  +C+N + +P +CCPLC
Sbjct: 1454 AEIACIRSCTNQINVPGECCPLC 1476

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281182663|ref|NP_001162574.1| cysteine rich transmembrane BMP regulator 1 precursor [Rattus norvegicus]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 84/215 (39%), Gaps = 63/215 (29%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEI--GQCCPVCLD--------- 54
           +N  SW    C EC C  G + C+ + CP    AC    I  GQCCP C D         
Sbjct: 617 KNEESWHDG-CRECYCHNGKEMCALITCPV--PACGNPTIRPGQCCPSCADDFVVQKPEL 673

Query: 55  ---------------------------CTCREGKVLCYSQQCPAAACSNPRPPEPGTCCP 87
                                      CTC  G+VLC ++ CP   C NP   +  +CCP
Sbjct: 674 STPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQ-DSCCP 732

Query: 88  RCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCT--VGNVTYQENQEWRLDACTS 145
           +C   D +      N+                 VPS C    G++ +   + W+ D CTS
Sbjct: 733 QCT-EDPLQPSTSHNES----------------VPSYCRNDEGDI-FLAAESWKPDVCTS 774

Query: 146 CVCKDRSHHCTQRIC-SVTCSNPMTIPNQCCPLCL 179
           CVC D S  C    C SV C  P+    QCCP CL
Sbjct: 775 CVCMDSSISCYSESCPSVACERPVLRKGQCCPYCL 809

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242018314|ref|XP_002429623.1| cysteine-rich motor neuron, putative [Pediculus humanus corporis] gi|212514596|gb|EEB16885.1| cysteine-rich motor neuron, putative [Pediculus humanus corporis]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 85/217 (39%), Gaps = 59/217 (27%)

Query: 6   ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQCCPVCLD----------- 54
           + G  W    C  C C  G   C   ECP  P      +   CCP C D           
Sbjct: 329 KEGEMWSIDPCTNCICHMGQILCDARECPPTPCQKPIKDDDNCCPYCPDESRFIESEGVA 388

Query: 55  ------------------CTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEIT 96
                             C C +G+ +CY+Q+C    C +P                   
Sbjct: 389 CSYSHPHNSVWKQGNCESCKCVDGQAICYTQECDVENCPHP------------------- 429

Query: 97  ALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCT 156
             V++ +     C + +  +P       CTVGN T++++ +W  D CT CVC D    CT
Sbjct: 430 --VLQKNKCCNICIEKMSQRP-------CTVGNSTFEDSDKWIEDDCTMCVCNDGQTMCT 480

Query: 157 QRICS-VTCSNPMTIPNQCCPLC-LGECTNSVRFIPI 191
           ++ICS + CSNP+     CCP+C  G  TN  +  P+
Sbjct: 481 KQICSPLHCSNPIRKLGMCCPVCPDGGETNGFKDNPV 517

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
WB|WBGene00007103	966	crm-1 [Caenorhabditis elegans	0.666	0.132	0.331	2.7e-21
UNIPROTKB|G5EF34	966	crm-1 "Protein CRM-1, isoform	0.666	0.132	0.331	2.7e-21
UNIPROTKB|F1S412	880	CRIM1 "Uncharacterized protein	0.859	0.187	0.240	7.1e-10
RGD|1308710	1037	Crim1 "cysteine rich transmemb	0.869	0.161	0.25	4.2e-10
MGI|MGI:1354756	1037	Crim1 "cysteine rich transmemb	0.869	0.161	0.255	9.6e-11
UNIPROTKB|F1MW38	1035	CRIM1 "Uncharacterized protein	0.859	0.159	0.242	1.1e-09
UNIPROTKB|E2R003	1037	CRIM1 "Uncharacterized protein	0.854	0.158	0.246	3.3e-10
UNIPROTKB|Q9NZV1	1036	CRIM1 "Cysteine-rich motor neu	0.859	0.159	0.252	1.2e-10
MGI|MGI:1313268	948	Chrd "chordin" [Mus musculus (	0.651	0.131	0.290	2.2e-16
RGD|620181	951	Chrd "chordin" [Rattus norvegi	0.651	0.131	0.290	2.2e-16

WB|WBGene00007103 crm-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
 Identities = 49/148 (33%), Positives = 68/148 (45%)

Query:    41 TKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVV 100
             T  E  Q  P C+ CTCR G VLC + +CP  AC NP       CCP C          V
Sbjct:   611 TDGETWQLAP-CVSCTCRVGHVLCRTTECPPIACPNPEYQNEEDCCPTCPEQK------V 663

Query:   101 ENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC 160
             EN  N+K  GD ++    D   +   VG+   Q++      +C  C  +  S  C +  C
Sbjct:   664 ENTKNEK--GDTIVC--TDDAGTAHIVGSSWRQDD----CTSCV-CSAEG-SADCYKEAC 713

Query:   161 --SVTC-SNPMTIPNQCCPLCLGECTNS 185
               S+ C  NP+ I  +CCP+C    ++S
Sbjct:   714 DESLECRGNPLVIKGKCCPVCSDALSSS 741

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|G5EF34 crm-1 "Protein CRM-1, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
 Identities = 49/148 (33%), Positives = 68/148 (45%)

Query:    41 TKSEIGQCCPVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVV 100
             T  E  Q  P C+ CTCR G VLC + +CP  AC NP       CCP C          V
Sbjct:   611 TDGETWQLAP-CVSCTCRVGHVLCRTTECPPIACPNPEYQNEEDCCPTCPEQK------V 663

Query:   101 ENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC 160
             EN  N+K  GD ++    D   +   VG+   Q++      +C  C  +  S  C +  C
Sbjct:   664 ENTKNEK--GDTIVC--TDDAGTAHIVGSSWRQDD----CTSCV-CSAEG-SADCYKEAC 713

Query:   161 --SVTC-SNPMTIPNQCCPLCLGECTNS 185
               S+ C  NP+ I  +CCP+C    ++S
Sbjct:   714 DESLECRGNPLVIKGKCCPVCSDALSSS 741

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S412 CRIM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 46/191 (24%), Positives = 72/191 (37%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLP-EACTKSEIGQCCPVCLDCTCREGKVLCYS 66
             G +W    C +C C  G   C    CP L  +  T+++   CCP C D   +      ++
Sbjct:   532 GETWHIDSCTQCTCHSGRVLCETEVCPPLLCQNPTRTQ-DSCCPQCPDEPLQPSS--SHN 588

Query:    67 QQCPAAACSNPRPP--------EPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK-- 116
                P+  C N            +P  C   C   D + +   E+  +   C   +L K  
Sbjct:   589 DSVPSY-CKNDEGDIFLAAESWKPDVCTS-CVCLDSVISCFSESCPS-VSCERPVLRKGQ 645

Query:   117 --P----ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNP 167
               P     D +P    C      Y + + W +D+CT C C      C+   C  + C  P
Sbjct:   646 CCPYCIVEDTIPKKVLCHFSGKAYADEERWDIDSCTHCYCLQGQTLCSTVSCPPLPCVEP 705

Query:   168 MTIPNQCCPLC 178
             + +   CCP+C
Sbjct:   706 INVEGSCCPMC 716

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

RGD|1308710 Crim1 "cysteine rich transmembrane BMP regulator 1 (chordin like)" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 47/188 (25%), Positives = 67/188 (35%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ--CCPVCLD-----CTCREG 60
             G +W    C +C C  G   C    CP  P  C      Q  CCP C +      T    
Sbjct:   690 GETWNIDSCTQCTCHSGRVLCETEVCP--PLLCQNPSRTQDSCCPQCTEDPLQPSTSHNE 747

Query:    61 KVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK---- 116
              V  Y +             +P  C   C   D   +   E+  +   C   +L K    
Sbjct:   748 SVPSYCRNDEGDIFLAAESWKPDVCTS-CVCMDSSISCYSESCPSVA-CERPVLRKGQCC 805

Query:   117 P---ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPMTI 170
             P    D +P    C     TY + + W +D+CT C C      C+   C  + C+ P+ +
Sbjct:   806 PYCLEDTIPKKVVCHFSGKTYADEERWDIDSCTHCYCLQGQTLCSTVSCPPLPCAEPIKV 865

Query:   171 PNQCCPLC 178
                CCP+C
Sbjct:   866 EGSCCPMC 873

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:1354756 Crim1 "cysteine rich transmembrane BMP regulator 1 (chordin like)" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 48/188 (25%), Positives = 67/188 (35%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ--CCPVCLD-----CTCREG 60
             G +W    C +C C  G   C    CP  P  C      Q  CCP C D      T    
Sbjct:   690 GETWNIDSCTQCTCHSGRVLCETEVCP--PLLCQNPSRTQDSCCPQCTDDPPQPSTSHNE 747

Query:    61 KVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK---- 116
              V  Y +             +P  C   C   D   +   E+  +   C   +L K    
Sbjct:   748 SVPSYCRNDEGDIFLAAESWKPDACTS-CVCVDSAISCYSESCPSVA-CERPVLRKGQCC 805

Query:   117 P---ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPMTI 170
             P    D +P    C     TY + + W +D+CT C C      C+   C  + C+ P+ +
Sbjct:   806 PYCLEDTIPKKVVCHFSGKTYADEERWDIDSCTHCYCLQGQTLCSTVSCPPLPCAEPIKV 865

Query:   171 PNQCCPLC 178
                CCP+C
Sbjct:   866 EGSCCPMC 873

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MW38 CRIM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 46/190 (24%), Positives = 72/190 (37%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLP-EACTKSEIGQCCPVCLDCTCREGKVLCYS 66
             G +W    C +C C  G   C    CP L  +  T+++   CCP C D   +      ++
Sbjct:   690 GETWHIDTCTQCTCHSGRVLCETEVCPPLLCQNPTRTQ-DSCCPQCPDEPLQPSS--SHN 746

Query:    67 QQCPAAACSNPRPP--------EPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK-- 116
                P+  C N            +P  C   C   D + +   E+  +   C   +L K  
Sbjct:   747 DSVPSY-CKNDEGDIFLAAESWKPDVCTS-CVCMDSVISCYSESCPS-VSCERPVLRKGQ 803

Query:   117 --P---ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPM 168
               P    D +P    C      Y + + W +D+CT C C      C+   C  + C  P+
Sbjct:   804 CCPYCIEDTIPKKVVCHFSGKAYADEERWDIDSCTHCYCLQGQTLCSTVSCPPLPCIEPI 863

Query:   169 TIPNQCCPLC 178
              +   CCP+C
Sbjct:   864 NMEGSCCPMC 873

GO:0005576 "extracellular region" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

UNIPROTKB|E2R003 CRIM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 47/191 (24%), Positives = 69/191 (36%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ--CCPVCLDCTCREGKVLCY 65
             G +W    C +C C  G   C    CP  P  C      Q  CCP C D   +      +
Sbjct:   690 GETWNIDSCTQCTCHSGRVLCETEVCP--PLLCENPSRTQDSCCPQCTDEPLQPSS--SH 745

Query:    66 SQQCPAAACSNPRPP--------EPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK- 116
             +   P+  C N            +P  C   C   D + +   E+  +   C   +L K 
Sbjct:   746 NDSVPSY-CKNDEGDIFLAAESWKPDVCTS-CVCMDSVISCYSESCPS-VSCERPVLRKG 802

Query:   117 ---P---ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNP 167
                P    D +P    C      Y + + W +D+CT C C      C+   C  + C  P
Sbjct:   803 QCCPYCIEDTIPKKVVCHFSGKAYADEERWDIDSCTHCYCLQGQTLCSTVSCPPLPCVEP 862

Query:   168 MTIPNQCCPLC 178
             + +   CCP+C
Sbjct:   863 INVEGSCCPMC 873

GO:0005576 "extracellular region" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

UNIPROTKB|Q9NZV1 CRIM1 "Cysteine-rich motor neuron 1 protein" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 48/190 (25%), Positives = 68/190 (35%)

Query:     8 GTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEIGQ--CCPVCLD-----CTCREG 60
             G +W    C +C C  G   C    CP  P  C      Q  CCP C D        R  
Sbjct:   690 GETWNIDSCTQCTCHSGRVLCETEVCP--PLLCQNPSRTQDSCCPQCTDQPFRPSLSRNN 747

Query:    61 KV--LCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDCGDALLPK-- 116
              V   C + +      +    P+    C  C   D + +   E+  +   C   +L K  
Sbjct:   748 SVPNYCKNDEGDIFLAAESWKPD---VCTSCICIDSVISCFSESCPS-VSCERPVLRKGQ 803

Query:   117 --P---ADLVPSG--CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPM 168
               P    D +P    C      Y + + W LD+CT C C      C+   C  + C  P+
Sbjct:   804 CCPYCIEDTIPKKVVCHFSGKAYADEERWDLDSCTHCYCLQGQTLCSTVSCPPLPCVEPI 863

Query:   169 TIPNQCCPLC 178
              +   CCP+C
Sbjct:   864 NVEGSCCPMC 873

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005520 "insulin-like growth factor binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005010 "insulin-like growth factor-activated receptor activity" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=TAS

MGI|MGI:1313268 Chrd "chordin" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
 Identities = 43/148 (29%), Positives = 58/148 (39%)

Query:    52 CLDCTCR--EGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDC 109
             C  CTC+   G+V C   QCP  AC+ P    P  CC +C              G +   
Sbjct:   806 CAVCTCKGATGEVHCEKVQCPRLACAQPVRANPTDCCKQCP----------VGSGTNAKL 855

Query:   110 GDALLPKPADLVPSGCTVGNVTYQENQEWRLD-------ACTSCVCKDRSHHCTQRICSV 162
             GD   P  AD  P GC      + ENQ W          +C +C C     HC +  CS 
Sbjct:   856 GD---PMQAD-GPRGCRFAGQWFPENQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSP 911

Query:   163 TCSNPMTIPNQCCPLCLGECTNSVRFIP 190
               S      ++CC  C  + ++  R +P
Sbjct:   912 PLSCGSGKESRCCSHCTAQRSSETRTLP 939

GO:0001501 "skeletal system development" evidence=IMP

GO:0001649 "osteoblast differentiation" evidence=IDA

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0001707 "mesoderm formation" evidence=IMP

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007389 "pattern specification process" evidence=IMP

GO:0007417 "central nervous system development" evidence=IMP

GO:0008201 "heparin binding" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0021919 "BMP signaling pathway involved in spinal cord dorsal/ventral patterning" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=ISO;IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0045545 "syndecan binding" evidence=IDA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO;IDA

GO:0045785 "positive regulation of cell adhesion" evidence=ISO

RGD|620181 Chrd "chordin" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
 Identities = 43/148 (29%), Positives = 57/148 (38%)

Query:    52 CLDCTCR--EGKVLCYSQQCPAAACSNPRPPEPGTCCPRCAGADEITALVVENDGNDKDC 109
             C  CTC+   G+V C   QCP  AC+ P    P  CC +C              G     
Sbjct:   809 CAVCTCKGATGEVHCEKVQCPRLACAQPVRANPTDCCKQCP----------VGSGTHAKL 858

Query:   110 GDALLPKPADLVPSGCTVGNVTYQENQEWRLD-------ACTSCVCKDRSHHCTQRICSV 162
             GD   P  AD  P GC      + ENQ W          +C +C C     HC +  CS 
Sbjct:   859 GD---PMQAD-GPRGCRFAGQWFPENQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSP 914

Query:   163 TCSNPMTIPNQCCPLCLGECTNSVRFIP 190
               S      ++CC  C  + ++  R +P
Sbjct:   915 PLSCGSGKESRCCSHCTAQRSSETRTLP 942

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0001649 "osteoblast differentiation" evidence=IEA;ISO

GO:0001702 "gastrulation with mouth forming second" evidence=IEA;ISO

GO:0001707 "mesoderm formation" evidence=IEA;ISO

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA;ISO

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0007389 "pattern specification process" evidence=ISO

GO:0007417 "central nervous system development" evidence=ISO

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0021919 "BMP signaling pathway involved in spinal cord dorsal/ventral patterning" evidence=IEA;ISO

GO:0030336 "negative regulation of cell migration" evidence=IEA;ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA;ISO

GO:0030900 "forebrain development" evidence=IEA;ISO

GO:0045545 "syndecan binding" evidence=IEA;ISO

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA;ISO

GO:0045785 "positive regulation of cell adhesion" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	192
pfam00093	57	pfam00093, VWC, von Willebrand factor type C domai	6e-04

>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 125 CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPMTIPN--QCCPLC 178
           C    V Y+  + W+ D CT C C D    C +  C  + C +P       +CCP+C
Sbjct: 1   CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57

The high cutoff was used to prevent overlap with pfam00094. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	99.51
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	99.45
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	99.3
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	99.22
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	98.15
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	97.79
PF12714	56	TILa: TILa domain	97.61
PF12714	56	TILa: TILa domain	96.7
PF05375	39	Pacifastin_I: Pacifastin inhibitor (LCMII); InterP	95.75
PF05375	39	Pacifastin_I: Pacifastin inhibitor (LCMII); InterP	95.67
PF05825	94	PSP94: Beta-microseminoprotein (PSP-94); InterPro:	93.09
KOG1544|consensus	470		90.89
cd00061	43	FN1 Fibronectin type 1 domain, approximately 40 re	89.82
PF05825	94	PSP94: Beta-microseminoprotein (PSP-94); InterPro:	89.19
smart00058	45	FN1 Fibronectin type 1 domain. One of three types	84.64
cd00061	43	FN1 Fibronectin type 1 domain, approximately 40 re	82.25

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=99.51  E-value=1.3e-14  Score=92.47  Aligned_cols=54  Identities=37%  Similarity=1.147  Sum_probs=33.8

Q ss_pred             eeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CCCCCCC--ccCCCCCcccc
Q psy10996        125 CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SVTCSNP--MTIPNQCCPLC  178 (192)
Q Consensus       125 C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~~C~~~--~~~~g~CCp~C  178 (192)
                      |.|+|++|.+|++|+++.|+.|+|.+|.|.|.++.| ++.|+.+  +..+|+|||+|
T Consensus         1 C~~~g~~y~~g~~w~~~~C~~C~C~~G~v~C~~~~Cp~~~C~~~~~~~~~g~CCp~C   57 (57)
T PF00093_consen    1 CSFNGRVYQNGESWHPDPCTTCTCQDGEVQCSRIQCPPLDCPNPELVKPPGECCPVC   57 (57)
T ss_dssp             EESSS-EE-SS-EE-S-SSEEEEEETTEEEEEE---S-SS-S-------SS-S--S-
T ss_pred             CeeCCEEeCCCCEECCCCCcEeEecCCEEEEcCCCCcCCCCCCCceecCCCCcCCCC
Confidence            689999999999999999999999999999999999 7899988  78999999987

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=99.45  E-value=1.3e-13  Score=88.34  Aligned_cols=54  Identities=33%  Similarity=0.968  Sum_probs=50.0

Q ss_pred             eeeCCEEecCCCeeccCCcceeEECCCC-ceeecccc-CC-CCCCCc--cCCCCCcccc
Q psy10996        125 CTVGNVTYQENQEWRLDACTSCVCKDRS-HHCTQRIC-SV-TCSNPM--TIPNQCCPLC  178 (192)
Q Consensus       125 C~~~g~~y~~G~~w~~~~C~~C~C~~g~-v~C~~~~C-~~-~C~~~~--~~~g~CCp~C  178 (192)
                      |+|+|++|.+|++|++++|++|+|.+|. +.|.++.| ++ .|+++.  ..+|+|||+|
T Consensus         1 C~~~g~~y~~G~~W~~~~C~~C~C~~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214        1 CVHNGEVYNDGETWKPDPCQICTCLDGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             CccCCEEeCCCCEECCCCCeECCcCCCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            6799999999999999999999999999 99999999 54 799887  7899999986

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=99.30  E-value=2.5e-12  Score=81.80  Aligned_cols=51  Identities=37%  Similarity=0.969  Sum_probs=30.6

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeeecCCCCCCCCc--cccCCCcccCC
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEACT--KSEIGQCCPVC   52 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~Cp~~~C~~~--~~~~g~CCp~C   52 (192)
                      |++|++|++|+++.|+.|+|.+|.+.|..+.|+.+.|+.+  +..+|+|||.|
T Consensus         5 g~~y~~g~~w~~~~C~~C~C~~G~v~C~~~~Cp~~~C~~~~~~~~~g~CCp~C   57 (57)
T PF00093_consen    5 GRVYQNGESWHPDPCTTCTCQDGEVQCSRIQCPPLDCPNPELVKPPGECCPVC   57 (57)
T ss_dssp             S-EE-SS-EE-S-SSEEEEEETTEEEEEE---S-SS-S-------SS-S--S-
T ss_pred             CEEeCCCCEECCCCCcEeEecCCEEEEcCCCCcCCCCCCCceecCCCCcCCCC
Confidence            8899999999998899999999999999999999899988  78899999876

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=99.22  E-value=2.2e-11  Score=78.00  Aligned_cols=52  Identities=33%  Similarity=0.857  Sum_probs=46.4

Q ss_pred             CCceecCCCEEecCCCeeeEECCCc-eEEeeecCCCC-CCCCcc--ccCCCcccCC
Q psy10996          1 MNESCENGTSWLSADCEECKCERGI-KFCSKVECPKL-PEACTK--SEIGQCCPVC   52 (192)
Q Consensus         1 ~G~~y~~G~~w~~~~C~~C~C~~g~-v~C~~~~Cp~~-~C~~~~--~~~g~CCp~C   52 (192)
                      .|++|++|++|++++|++|+|.+|. +.|..+.|+.+ .|+.+.  ..+|+|||.|
T Consensus         4 ~g~~y~~G~~W~~~~C~~C~C~~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214        4 NGEVYNDGETWKPDPCQICTCLDGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             CCEEeCCCCEECCCCCeECCcCCCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            3899999999999889999999999 99999999875 788876  7888888876

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=98.15  E-value=1.9e-06  Score=56.33  Aligned_cols=40  Identities=28%  Similarity=0.792  Sum_probs=35.4

Q ss_pred             eeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CCCCC
Q psy10996        125 CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SVTCS  165 (192)
Q Consensus       125 C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~~C~  165 (192)
                      |+++|++|++|++|. +.|.+|+|.+|.+.|+.+.| +..|.
T Consensus         1 C~~~G~~y~~g~~w~-d~Cn~CtC~~G~v~Ct~~~C~~~~c~   41 (67)
T smart00215        1 CYNNGSYYPPGAKWD-DDCNRCTCLNGRVSCTKVWCGPKPCL   41 (67)
T ss_pred             CeECCEEcCCCCccc-cCCCCCEecCCCEEecCCcCCCchhh
Confidence            678999999999997 58999999999999999999 55543

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=97.79  E-value=2.2e-05  Score=51.26  Aligned_cols=39  Identities=31%  Similarity=0.633  Sum_probs=34.4

Q ss_pred             CCceecCCCEEecCCCeeeEECCCceEEeeecCCCCCCCC
Q psy10996          1 MNESCENGTSWLSADCEECKCERGIKFCSKVECPKLPEAC   40 (192)
Q Consensus         1 ~G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~Cp~~~C~~   40 (192)
                      .|+.|++|+.|. +.|..|+|.+|.+.|+++.|+...|..
T Consensus         4 ~G~~y~~g~~w~-d~Cn~CtC~~G~v~Ct~~~C~~~~c~l   42 (67)
T smart00215        4 NGSYYPPGAKWD-DDCNRCTCLNGRVSCTKVWCGPKPCLL   42 (67)
T ss_pred             CCEEcCCCCccc-cCCCCCEecCCCEEecCCcCCCchhhc
Confidence            388999999998 799999999999999999998766543

>PF12714 TILa: TILa domain

Probab=97.61  E-value=0.0001  Score=46.45  Aligned_cols=37  Identities=32%  Similarity=0.892  Sum_probs=32.4

Q ss_pred             cee-eCCEEecCCCeeccCCcc-eeEE-CCCCceeecccc
Q psy10996        124 GCT-VGNVTYQENQEWRLDACT-SCVC-KDRSHHCTQRIC  160 (192)
Q Consensus       124 ~C~-~~g~~y~~G~~w~~~~C~-~C~C-~~g~v~C~~~~C  160 (192)
                      +|+ ++|+.|+.||+|..+.|+ +|+| .+|.|.|....|
T Consensus         1 GC~d~~G~yy~~Ge~~~~~~C~~~C~C~~~g~v~C~~~~C   40 (56)
T PF12714_consen    1 GCTDYNGRYYPPGESWWTDDCTQRCTCQPNGQVQCQPSSC   40 (56)
T ss_pred             CCcCcCCEEECCCCEEeCCCCCEeEEEcCCCeEEEeCCCC
Confidence            478 899999999999887666 7999 689999999888

>PF12714 TILa: TILa domain

Probab=96.70  E-value=0.0051  Score=38.68  Aligned_cols=35  Identities=31%  Similarity=0.806  Sum_probs=29.9

Q ss_pred             CceecCCCEEecCCCe-eeEE-CCCceEEeeecCCCC
Q psy10996          2 NESCENGTSWLSADCE-ECKC-ERGIKFCSKVECPKL   36 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~-~C~C-~~g~v~C~~~~Cp~~   36 (192)
                      |+.|..||+|..+.|+ .|+| .+|.|+|....|++.
T Consensus         7 G~yy~~Ge~~~~~~C~~~C~C~~~g~v~C~~~~C~~~   43 (56)
T PF12714_consen    7 GRYYPPGESWWTDDCTQRCTCQPNGQVQCQPSSCPPG   43 (56)
T ss_pred             CEEECCCCEEeCCCCCEeEEEcCCCeEEEeCCCCCCC
Confidence            7889999999986665 8999 788999999999753

>PF05375 Pacifastin_I: Pacifastin inhibitor (LCMII); InterPro: IPR008037 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.75  E-value=0.012  Score=34.21  Aligned_cols=27  Identities=26%  Similarity=0.884  Sum_probs=23.0

Q ss_pred             cCCCeeccCCcceeEEC-CCCceeecccc
Q psy10996        133 QENQEWRLDACTSCVCK-DRSHHCTQRIC  160 (192)
Q Consensus       133 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~C  160 (192)
                      .+|++|+. .|..|+|. +|.+.|+++.|
T Consensus         3 ~pG~~~k~-dCN~C~C~~~G~~~CT~~~C   30 (39)
T PF05375_consen    3 TPGSTFKK-DCNTCTCSSDGKWACTRKAC   30 (39)
T ss_dssp             -TTTEEEE-TTEEEEEBTTSSEEEE-SSS
T ss_pred             CCCCeeeC-CCCCCCCCCCCcCccCcccC
Confidence            36899997 69999999 99999999888

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of serine protease inhibitors belong to MEROPS inhibitor family I19, clan IW. They inhibit chymotrpsin, a peptidase belong to the S1 family (IPR001254 from INTERPRO) []. They were first isolated from Locusta migratoria migratoria(migratory locust). These were HI, LMCI-1 (PMP-D2) and LMCI-2 (PMP-C) [, , ]; five additional members SGPI-1 to 5 were identified in Schistocerca gregaria (desert locust) [, ], and a heterodimeric serine protease inhibitor (pacifastin) was isolated from the hemolymph of Pacifastacus leniusculus (Signal crayfish) []. Pacifastin is a 155kDa composed of two covalently linked subunits, which are separately encoded. The heavy chain of pacifastin (105 kDa) is related to transferrins, containing three transferrin lobes, two of which seem to be active for iron binding []. A number of the members of the transferrin family are also serine peptidases belong to MEROPS peptidase family S60 (IPR001156 from INTERPRO). The light chain of pacifastin (44 kDa) is the proteinase inhibitory subunit, and has nine cysteine-rich inhibitory domains that are homologous to each other. The locust inhibitors share a conserved array of six cysteine residues with the pacifastin light chain. The structure of members of this family reveal that they are comprised of a triple-stranded antiparallel beta-sheet connected by three disulphide bridges []. The biological function(s) of the locust inhibitors is (are) not fully understood. LMCI-1 and LMCI-2 were shown to inhibit the endogenous proteolytic activating cascade of prophenoloxidase []. Expression analysis shows that the genes encoding the SGPI precursors are differentially expressed in a time-, stage- and hormone-dependent manner.; GO: 0030414 peptidase inhibitor activity; PDB: 2VU8_I 1WO9_A 1GL1_K 1PMC_A 2XTT_A 2F91_B 1KJ0_A 1GL0_I 1KGM_A 3TVJ_I.

>PF05375 Pacifastin_I: Pacifastin inhibitor (LCMII); InterPro: IPR008037 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.67  E-value=0.018  Score=33.44  Aligned_cols=29  Identities=31%  Similarity=0.935  Sum_probs=23.9

Q ss_pred             cCCCEEecCCCeeeEEC-CCceEEeeecCCC
Q psy10996          6 ENGTSWLSADCEECKCE-RGIKFCSKVECPK   35 (192)
Q Consensus         6 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~Cp~   35 (192)
                      .+|++|.. .|..|+|. +|.+.|+.+.|++
T Consensus         3 ~pG~~~k~-dCN~C~C~~~G~~~CT~~~C~~   32 (39)
T PF05375_consen    3 TPGSTFKK-DCNTCTCSSDGKWACTRKACPP   32 (39)
T ss_dssp             -TTTEEEE-TTEEEEEBTTSSEEEE-SSSS-
T ss_pred             CCCCeeeC-CCCCCCCCCCCcCccCcccCcC
Confidence            47999994 79999998 9999999999975

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of serine protease inhibitors belong to MEROPS inhibitor family I19, clan IW. They inhibit chymotrpsin, a peptidase belong to the S1 family (IPR001254 from INTERPRO) []. They were first isolated from Locusta migratoria migratoria(migratory locust). These were HI, LMCI-1 (PMP-D2) and LMCI-2 (PMP-C) [, , ]; five additional members SGPI-1 to 5 were identified in Schistocerca gregaria (desert locust) [, ], and a heterodimeric serine protease inhibitor (pacifastin) was isolated from the hemolymph of Pacifastacus leniusculus (Signal crayfish) []. Pacifastin is a 155kDa composed of two covalently linked subunits, which are separately encoded. The heavy chain of pacifastin (105 kDa) is related to transferrins, containing three transferrin lobes, two of which seem to be active for iron binding []. A number of the members of the transferrin family are also serine peptidases belong to MEROPS peptidase family S60 (IPR001156 from INTERPRO). The light chain of pacifastin (44 kDa) is the proteinase inhibitory subunit, and has nine cysteine-rich inhibitory domains that are homologous to each other. The locust inhibitors share a conserved array of six cysteine residues with the pacifastin light chain. The structure of members of this family reveal that they are comprised of a triple-stranded antiparallel beta-sheet connected by three disulphide bridges []. The biological function(s) of the locust inhibitors is (are) not fully understood. LMCI-1 and LMCI-2 were shown to inhibit the endogenous proteolytic activating cascade of prophenoloxidase []. Expression analysis shows that the genes encoding the SGPI precursors are differentially expressed in a time-, stage- and hormone-dependent manner.; GO: 0030414 peptidase inhibitor activity; PDB: 2VU8_I 1WO9_A 1GL1_K 1PMC_A 2XTT_A 2F91_B 1KJ0_A 1GL0_I 1KGM_A 3TVJ_I.

>PF05825 PSP94: Beta-microseminoprotein (PSP-94); InterPro: IPR008735 This family consists of the mammalian specific protein beta-microseminoprotein

Probab=93.09  E-value=0.1  Score=36.31  Aligned_cols=37  Identities=24%  Similarity=0.708  Sum_probs=30.9

Q ss_pred             CCccee-eCCEEecCCCeeccCCcceeEECCCCceeec
Q psy10996        121 VPSGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQ  157 (192)
Q Consensus       121 ~~~~C~-~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~  157 (192)
                      ...+|. ++|+.|.-|++|+.+.|..|+|.+..+.|-.
T Consensus        14 ~~~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~   51 (94)
T PF05825_consen   14 SPNECKDWDGKKHPLNSTWKTDDCEECSCSEDGISCCS   51 (94)
T ss_dssp             STTCEEETTTEEEETTEEEEETTSEEEEEESSEEEEEE
T ss_pred             CCCccEeCCCcEEeCCCeECCCCCcEEEecCCceEecc
Confidence            356787 5899999999999999999999876676644

Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from Homo sapiens seminal plasma []. The exact function of this protein is unknown.; PDB: 2IZ4_A 1XHH_A 3IX0_C 2IZ3_A.

>KOG1544|consensus

Probab=90.89  E-value=0.28  Score=41.64  Aligned_cols=37  Identities=30%  Similarity=0.811  Sum_probs=34.4

Q ss_pred             cceeeCCEEecCCCeeccCCcceeEECCCCceeecccc
Q psy10996        123 SGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC  160 (192)
Q Consensus       123 ~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C  160 (192)
                      .+|..+|+.|.+|.+... .|.+|+|.++.+.|....|
T Consensus       110 ~gc~~gg~~y~~G~t~~~-NCn~CTC~n~qWKCdq~~C  146 (470)
T KOG1544|consen  110 QGCMHGGRIYPVGGTYWD-NCNRCTCQNRQWKCDQEPC  146 (470)
T ss_pred             hhcccCceecccCCeeec-cccceeecCCceecCCcee
Confidence            789999999999999777 8999999999999999877

>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges

Probab=89.82  E-value=0.57  Score=27.71  Aligned_cols=30  Identities=20%  Similarity=0.476  Sum_probs=23.8

Q ss_pred             CCceecCCCEEec---CCCeeeEECC--CceEEee
Q psy10996          1 MNESCENGTSWLS---ADCEECKCER--GIKFCSK   30 (192)
Q Consensus         1 ~G~~y~~G~~w~~---~~C~~C~C~~--g~v~C~~   30 (192)
                      .|+.|+.|++|..   ..-..|+|..  |.+.|++
T Consensus         8 t~~~Y~ige~W~r~~~~~~~~C~C~G~~G~~~C~~   42 (43)
T cd00061           8 TGVFYRVGETWERPSEGHVLQCTCLGNRGEARCDP   42 (43)
T ss_pred             cccEEeCCCEEEeecCCeEEEEEEeCCCCceEEee
Confidence            3788999999977   3355788888  8888875

FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.

>PF05825 PSP94: Beta-microseminoprotein (PSP-94); InterPro: IPR008735 This family consists of the mammalian specific protein beta-microseminoprotein

Probab=89.19  E-value=0.45  Score=33.12  Aligned_cols=30  Identities=27%  Similarity=0.701  Sum_probs=26.2

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeee
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKV   31 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~   31 (192)
                      |+.|.-|++|..+.|..|.|.+..+.|-..
T Consensus        23 G~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~   52 (94)
T PF05825_consen   23 GKKHPLNSTWKTDDCEECSCSEDGISCCST   52 (94)
T ss_dssp             TEEEETTEEEEETTSEEEEEESSEEEEEES
T ss_pred             CcEEeCCCeECCCCCcEEEecCCceEeccC
Confidence            788999999999999999998888887543

Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from Homo sapiens seminal plasma []. The exact function of this protein is unknown.; PDB: 2IZ4_A 1XHH_A 3IX0_C 2IZ3_A.

>smart00058 FN1 Fibronectin type 1 domain

Probab=84.64  E-value=2.1  Score=25.54  Aligned_cols=31  Identities=19%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             CCceecCCCEEec--C--CCeeeEECCCc---eEEeee
Q psy10996          1 MNESCENGTSWLS--A--DCEECKCERGI---KFCSKV   31 (192)
Q Consensus         1 ~G~~y~~G~~w~~--~--~C~~C~C~~g~---v~C~~~   31 (192)
                      +|..|+.|++|..  +  .-..|+|..+.   +.|++.
T Consensus         6 t~~~Y~ige~W~r~~~~g~~~~C~C~G~g~G~~~C~~~   43 (45)
T smart00058        6 TGTTYRIGDTWERPYEGGHVLQCTCLGNGRGEWKCDPV   43 (45)
T ss_pred             cccEEecCCEEEeecCCCcEEEeEEcCCCceEEEEEec
Confidence            4789999999987  2  34578997765   888764

One of three types of internal repeat within the plasma protein, fibronectin. Found also in coagulation factor XII, HGF activator and tissue-type plasminogen activator. In t-PA and fibronectin, this domain type contributes to fibrin-binding.

>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges

Probab=82.25  E-value=1.8  Score=25.58  Aligned_cols=29  Identities=21%  Similarity=0.609  Sum_probs=23.5

Q ss_pred             CEEecCCCeecc---CCcceeEECC--CCceeec
Q psy10996        129 NVTYQENQEWRL---DACTSCVCKD--RSHHCTQ  157 (192)
Q Consensus       129 g~~y~~G~~w~~---~~C~~C~C~~--g~v~C~~  157 (192)
                      ++.|..|++|..   .--..|+|..  |.+.|..
T Consensus         9 ~~~Y~ige~W~r~~~~~~~~C~C~G~~G~~~C~~   42 (43)
T cd00061           9 GVFYRVGETWERPSEGHVLQCTCLGNRGEARCDP   42 (43)
T ss_pred             ccEEeCCCEEEeecCCeEEEEEEeCCCCceEEee
Confidence            778999999963   3566899998  8888875

FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	1e-06

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Length = 73

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS--VTCSNPMTIPNQCCPLCL 179
              C      Y +   W+ + C  CVC   +  C   IC     C +P     +CCP+C 
Sbjct: 7   AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP 66

Query: 180 GECTNS 185
            +   +
Sbjct: 67  ADLAAA 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	99.55
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	99.29
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	99.07
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	98.81
2xtt_A	36	Protease inhibitor SGPI-1; hydrolase, catalytic me	96.19
2xtt_A	36	Protease inhibitor SGPI-1; hydrolase, catalytic me	96.07
1gl0_I	35	Protease inhibitor LCMI I; hydrolase/inhibitor, co	95.76
1gl0_I	35	Protease inhibitor LCMI I; hydrolase/inhibitor, co	94.88
1xhh_A	91	Beta-microseminoprotein; beta srands, novel fold,	94.58
1wo9_A	35	HI-1, trypsin inhibitor; hydrolase inhibitor; NMR	94.48
3ix0_A	94	Beta-microseminoprotein; beta sheet, greek KEY mot	93.55
1wo9_A	35	HI-1, trypsin inhibitor; hydrolase inhibitor; NMR	93.46
3tvj_I	38	Protease inhibitor SGPI-2; in vitro evolution, spe	90.35
3tvj_I	38	Protease inhibitor SGPI-2; in vitro evolution, spe	89.78
3ix0_A	94	Beta-microseminoprotein; beta sheet, greek KEY mot	87.6
1xhh_A	91	Beta-microseminoprotein; beta srands, novel fold,	87.1

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=99.55  E-value=8.2e-15  Score=96.95  Aligned_cols=63  Identities=27%  Similarity=0.828  Sum_probs=58.2

Q ss_pred             CcceeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CC-CCCCCccCCCCCcccccCCccC
Q psy10996        122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SV-TCSNPMTIPNQCCPLCLGECTN  184 (192)
Q Consensus       122 ~~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~-~C~~~~~~~g~CCp~C~~~~~~  184 (192)
                      ..+|+|+|++|.+|++|++++|++|+|.+|.+.|..+.| ++ .|++++.++|+|||+|.+....
T Consensus         7 ~~~C~~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~~~GeCCPvC~~~~~~   71 (73)
T 1u5m_A            7 AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAA   71 (73)
T ss_dssp             CSCEESSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCSSSSC
T ss_pred             CCCeeECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcccCCCcCCCCCCcccC
Confidence            468999999999999999999999999999999999999 66 9999999999999999876543

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=99.29  E-value=4.7e-12  Score=83.59  Aligned_cols=52  Identities=23%  Similarity=0.808  Sum_probs=45.5

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeeecCCCC-CCCCccccCCCcccCCC
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKVECPKL-PEACTKSEIGQCCPVCL   53 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~g~CCp~C~   53 (192)
                      |+.|++|++|++++|++|+|.+|.+.|..+.|+.+ .|+.+...+|+|||+|+
T Consensus        14 G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~~~GeCCPvC~   66 (73)
T 1u5m_A           14 GQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP   66 (73)
T ss_dssp             SCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCC
T ss_pred             CEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcccCCCcCCCCC
Confidence            78999999999989999999999999999999877 78777777777777763

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=99.07  E-value=9.5e-11  Score=75.75  Aligned_cols=57  Identities=25%  Similarity=0.674  Sum_probs=51.0

Q ss_pred             cceeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CCC--CCCCccCCCCCcccccC
Q psy10996        123 SGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SVT--CSNPMTIPNQCCPLCLG  180 (192)
Q Consensus       123 ~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~~--C~~~~~~~g~CCp~C~~  180 (192)
                      ..|.++|++|.++. |..++|+.|+|++|.+.|.++.| ++.  |..++..+|+|||+|.+
T Consensus         8 ~~C~~eGe~~~~~~-~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~~~g~CCp~C~~   67 (67)
T 3bk3_C            8 ASCENEGEVLHIPN-ITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG   67 (67)
T ss_dssp             CBCSSTTCEECCTT-TTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEECCTTCSSCEECC
T ss_pred             CceEECCEEEeCCC-ccCCCcceeEecCCceEEccccCCCCccccCCcccCCCCcCcCcCc
Confidence            57999999998764 88889999999999999999999 677  99888889999999963

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=98.81  E-value=4.7e-09  Score=67.74  Aligned_cols=41  Identities=27%  Similarity=0.672  Sum_probs=35.9

Q ss_pred             ecCCCeeeEECCCceEEeeecCCCCC--CCCccccCCCcccCC
Q psy10996         12 LSADCEECKCERGIKFCSKVECPKLP--EACTKSEIGQCCPVC   52 (192)
Q Consensus        12 ~~~~C~~C~C~~g~v~C~~~~Cp~~~--C~~~~~~~g~CCp~C   52 (192)
                      ..++|++|+|++|.+.|.++.||.+.  |..++..+|+|||.|
T Consensus        23 ~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~~~g~CCp~C   65 (67)
T 3bk3_C           23 TDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKC   65 (67)
T ss_dssp             TTSTTEEEEECSSBEEEEECCCCCCCTTCCCEECCTTCSSCEE
T ss_pred             cCCCcceeEecCCceEEccccCCCCccccCCcccCCCCcCcCc
Confidence            44789999999999999999999887  888877889999887

>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A

Probab=96.19  E-value=0.0062  Score=33.89  Aligned_cols=30  Identities=37%  Similarity=1.077  Sum_probs=26.6

Q ss_pred             ecCCCEEecCCCeeeEEC-CCceEEeeecCCC
Q psy10996          5 CENGTSWLSADCEECKCE-RGIKFCSKVECPK   35 (192)
Q Consensus         5 y~~G~~w~~~~C~~C~C~-~g~v~C~~~~Cp~   35 (192)
                      -.+|++|. +.|.+|+|. +|.+.|+...|+.
T Consensus         4 C~pG~~~~-~dCNtC~C~~~G~W~CT~~~Cp~   34 (36)
T 2xtt_A            4 CEPGQTKK-QDCNTCRCGSDGVWACTRMGCPP   34 (36)
T ss_dssp             SCTTCEEE-ETTEEEEECTTSCEEEECCCCCC
T ss_pred             CCCCCEEE-CCCCccCCCCCCEEeeeCCcCCC
Confidence            35799999 489999999 9999999999984

>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A

Probab=96.07  E-value=0.0063  Score=33.88  Aligned_cols=28  Identities=29%  Similarity=0.681  Sum_probs=24.6

Q ss_pred             cCCCeeccCCcceeEEC-CCCceeeccccC
Q psy10996        133 QENQEWRLDACTSCVCK-DRSHHCTQRICS  161 (192)
Q Consensus       133 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~C~  161 (192)
                      .+|++|+. +|.+|+|. +|.+.|+++.|+
T Consensus         5 ~pG~~~~~-dCNtC~C~~~G~W~CT~~~Cp   33 (36)
T 2xtt_A            5 EPGQTKKQ-DCNTCRCGSDGVWACTRMGCP   33 (36)
T ss_dssp             CTTCEEEE-TTEEEEECTTSCEEEECCCCC
T ss_pred             CCCCEEEC-CCCccCCCCCCEEeeeCCcCC
Confidence            46888888 79999999 999999998883

>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1

Probab=95.76  E-value=0.015  Score=31.89  Aligned_cols=30  Identities=30%  Similarity=0.814  Sum_probs=26.1

Q ss_pred             ecCCCEEecCCCeeeEECC-CceEEeeecCCC
Q psy10996          5 CENGTSWLSADCEECKCER-GIKFCSKVECPK   35 (192)
Q Consensus         5 y~~G~~w~~~~C~~C~C~~-g~v~C~~~~Cp~   35 (192)
                      -.+|++|. +.|..|+|.+ |+..|+.+.|.+
T Consensus         4 C~PG~~~k-~~CN~C~C~~~G~~~CTlk~C~P   34 (35)
T 1gl0_I            4 CTPGQVKQ-QDCNTCTCTPTGVWGCTLMGCQP   34 (35)
T ss_dssp             CCTTCEEE-CSSCEEEECTTSCEEEECCCCCC
T ss_pred             cCCCcccc-cCCCccCCCCCCeEEEEeecccC
Confidence            35799999 6899999977 899999999974

>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1

Probab=94.88  E-value=0.028  Score=30.79  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             cCCCeeccCCcceeEECC-CCceeecccc
Q psy10996        133 QENQEWRLDACTSCVCKD-RSHHCTQRIC  160 (192)
Q Consensus       133 ~~G~~w~~~~C~~C~C~~-g~v~C~~~~C  160 (192)
                      .+|+.|+. .|..|+|.+ |...|+++.|
T Consensus         5 ~PG~~~k~-~CN~C~C~~~G~~~CTlk~C   32 (35)
T 1gl0_I            5 TPGQVKQQ-DCNTCTCTPTGVWGCTLMGC   32 (35)
T ss_dssp             CTTCEEEC-SSCEEEECTTSCEEEECCCC
T ss_pred             CCCccccc-CCCccCCCCCCeEEEEeecc
Confidence            36889986 799999985 9999999888

>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A

Probab=94.58  E-value=0.029  Score=37.72  Aligned_cols=35  Identities=23%  Similarity=0.713  Sum_probs=30.9

Q ss_pred             ccee-eCCEEecCCCeeccCCcceeEECCCCceeec
Q psy10996        123 SGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQ  157 (192)
Q Consensus       123 ~~C~-~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~  157 (192)
                      ..|. ++|+.+.-|++|+.+.|..|+|.+..+.|-.
T Consensus        13 ~~C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~   48 (91)
T 1xhh_A           13 NECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCN   48 (91)
T ss_dssp             TEEEETTTEEEECCCCEECSSSEEEEECSSEEEEEE
T ss_pred             CCCCcCCCcEEeCCCeECCCCceEeEecCCCcEeec
Confidence            4699 8999999999999999999999977777765

>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1

Probab=94.48  E-value=0.028  Score=31.02  Aligned_cols=27  Identities=26%  Similarity=0.745  Sum_probs=24.1

Q ss_pred             cCCCeeccCCcceeEEC-CCCceeecccc
Q psy10996        133 QENQEWRLDACTSCVCK-DRSHHCTQRIC  160 (192)
Q Consensus       133 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~C  160 (192)
                      .+|++++. +|.+|+|. +|.+.|+...|
T Consensus         5 ~pG~ti~~-dCNtCtC~~~g~W~CT~~~C   32 (35)
T 1wo9_A            5 TPGQTKKQ-DCNTCTCTPTGIWGCTRKAC   32 (35)
T ss_dssp             CTTCEEEE-TTEEEEECTTSCEECCCSSS
T ss_pred             CCCCEEEC-CCCceECCCCCEEcCCCCCC
Confidence            46888888 89999999 99999999877

>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A

Probab=93.55  E-value=0.051  Score=36.86  Aligned_cols=37  Identities=24%  Similarity=0.668  Sum_probs=29.3

Q ss_pred             CCccee-eCCEEecCCCeeccCCcceeEECCCCceeec
Q psy10996        121 VPSGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQ  157 (192)
Q Consensus       121 ~~~~C~-~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~  157 (192)
                      ...+|. ++|+.|.-|++|+.+.|..|+|.+..+.|-.
T Consensus        14 ~~~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~   51 (94)
T 3ix0_A           14 STRKCMDLKGNKHPINSEWQTDNCETCTCYETEISCCT   51 (94)
T ss_dssp             ---CEECTTSCEECTTCEEECTTSEEEEECSSEEEEEE
T ss_pred             CCCcCCCCCCCEEeCCCEECCCCCcEeEecCCCceecc
Confidence            347898 7899999999999999999999865566544

>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1

Probab=93.46  E-value=0.07  Score=29.39  Aligned_cols=30  Identities=33%  Similarity=0.884  Sum_probs=26.1

Q ss_pred             ecCCCEEecCCCeeeEEC-CCceEEeeecCCC
Q psy10996          5 CENGTSWLSADCEECKCE-RGIKFCSKVECPK   35 (192)
Q Consensus         5 y~~G~~w~~~~C~~C~C~-~g~v~C~~~~Cp~   35 (192)
                      -.+|++++. +|.+|+|. +|...|+...|+.
T Consensus         4 c~pG~ti~~-dCNtCtC~~~g~W~CT~~~C~~   34 (35)
T 1wo9_A            4 CTPGQTKKQ-DCNTCTCTPTGIWGCTRKACRT   34 (35)
T ss_dssp             CCTTCEEEE-TTEEEEECTTSCEECCCSSSSC
T ss_pred             CCCCCEEEC-CCCceECCCCCEEcCCCCCCCC
Confidence            467999995 89999999 9999999998873

>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A

Probab=90.35  E-value=0.25  Score=27.52  Aligned_cols=28  Identities=25%  Similarity=0.735  Sum_probs=22.1

Q ss_pred             cCCCeeccCCcceeEEC-CCC-ceeeccccC
Q psy10996        133 QENQEWRLDACTSCVCK-DRS-HHCTQRICS  161 (192)
Q Consensus       133 ~~G~~w~~~~C~~C~C~-~g~-v~C~~~~C~  161 (192)
                      .+|++|+. .|.+|+|. +|. ..|+.+.||
T Consensus         8 ~Pg~tFk~-~CNtC~C~~dG~~a~CT~k~Cp   37 (38)
T 3tvj_I            8 EPGTTFKD-KCNTCRCGSDGKSAVCTKLWCN   37 (38)
T ss_dssp             CTTCEEEE-TTEEEEECTTSSCEEEECCEEC
T ss_pred             CCCCeeec-cCceeECCCCCceeEeecccCC
Confidence            47889997 89999997 566 478887663

>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A

Probab=89.78  E-value=0.35  Score=26.91  Aligned_cols=31  Identities=35%  Similarity=1.021  Sum_probs=24.7

Q ss_pred             eecCCCEEecCCCeeeEECC-Cc-eEEeeecCCC
Q psy10996          4 SCENGTSWLSADCEECKCER-GI-KFCSKVECPK   35 (192)
Q Consensus         4 ~y~~G~~w~~~~C~~C~C~~-g~-v~C~~~~Cp~   35 (192)
                      .-.+|++|. +.|.+|+|.. |. ..|+.+.||+
T Consensus         6 ~C~Pg~tFk-~~CNtC~C~~dG~~a~CT~k~Cp~   38 (38)
T 3tvj_I            6 TCEPGTTFK-DKCNTCRCGSDGKSAVCTKLWCNQ   38 (38)
T ss_dssp             CCCTTCEEE-ETTEEEEECTTSSCEEEECCEECC
T ss_pred             ccCCCCeee-ccCceeECCCCCceeEeecccCCc
Confidence            346899999 5999999964 54 6899998873

>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A

Probab=87.60  E-value=0.6  Score=31.50  Aligned_cols=30  Identities=20%  Similarity=0.617  Sum_probs=25.8

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeee
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKV   31 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~   31 (192)
                      |+.|.-|++|..+.|..|.|....+.|-..
T Consensus        23 G~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~   52 (94)
T 3ix0_A           23 GNKHPINSEWQTDNCETCTCYETEISCCTL   52 (94)
T ss_dssp             SCEECTTCEEECTTSEEEEECSSEEEEEEC
T ss_pred             CCEEeCCCEECCCCCcEeEecCCCceeccC
Confidence            789999999999999999998777777643

>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A

Probab=87.10  E-value=0.58  Score=31.35  Aligned_cols=30  Identities=30%  Similarity=0.711  Sum_probs=26.3

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeee
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKV   31 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~   31 (192)
                      |+.+.-|+.|..+.|..|.|.+..+.|-..
T Consensus        20 G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~~   49 (91)
T 1xhh_A           20 GVSHPLNSVWKTKDCEECTCGQDAISCCNT   49 (91)
T ss_dssp             TEEEECCCCEECSSSEEEEECSSEEEEEEC
T ss_pred             CcEEeCCCeECCCCceEeEecCCCcEeecC
Confidence            788999999999999999999888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	3e-07
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	0.002
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	0.002

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS--VTCSNPMTIPNQCCPLCL 179
              C      Y +   W+ + C  CVC   +  C   IC     C +P     +CCP+C 
Sbjct: 7   AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP 66

Query: 180 GECTNS 185
            +   +
Sbjct: 67  ADLAAA 72

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 6  ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEI-GQCCPVC 52
           +   W    C  C C+ G   C  + C  + +  +     G+CCP+C
Sbjct: 18 NDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.002
 Identities = 13/38 (34%), Positives = 13/38 (34%)

Query: 52 CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 89
          C  C C  G VLC    C             G CCP C
Sbjct: 28 CRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	99.55
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	99.28
d1o9aa1	44	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	92.14
d1e88a3	41	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	89.68
d2cg7a1	43	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	88.27
d1gl1i_	34	Protease inhibitor PMP-C {Migratory locust (Locust	87.46
d1e88a3	41	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	86.54
d1o9aa1	44	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	85.31
d1gl0i_	32	Protease inhibitor PMP-D2V {Migratory locust (Locu	82.47

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.7e-15  Score=97.06  Aligned_cols=62  Identities=27%  Similarity=0.843  Sum_probs=56.7

Q ss_pred             CcceeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CC-CCCCCccCCCCCcccccCCcc
Q psy10996        122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SV-TCSNPMTIPNQCCPLCLGECT  183 (192)
Q Consensus       122 ~~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~-~C~~~~~~~g~CCp~C~~~~~  183 (192)
                      .++|+|+|++|.+|++|++|+|++|+|.+|.+.|.++.| ++ .|.+++.++|+|||+|++...
T Consensus         7 ~~~C~~~g~~y~~Ge~w~~d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~~~~g~CCp~C~~~~~   70 (73)
T d1u5ma_           7 AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLA   70 (73)
T ss_dssp             CSCEESSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCSSSS
T ss_pred             CCCCeECCEEecCCCEECCCCCeEeEecCCeEEEeeccCCCCCCCCCceecCCCcCCcCCCCcc
Confidence            578999999999999999999999999999999999999 54 588888899999999987654

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=83.19  Aligned_cols=52  Identities=23%  Similarity=0.808  Sum_probs=42.0

Q ss_pred             CceecCCCEEecCCCeeeEECCCceEEeeecCCCC-CCCCccccCCCcccCCC
Q psy10996          2 NESCENGTSWLSADCEECKCERGIKFCSKVECPKL-PEACTKSEIGQCCPVCL   53 (192)
Q Consensus         2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~g~CCp~C~   53 (192)
                      |++|++|++|++|+|+.|+|.+|.+.|..+.|+.+ .|..++..+|+|||.|+
T Consensus        14 g~~y~~Ge~w~~d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~~~~g~CCp~C~   66 (73)
T d1u5ma_          14 GQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP   66 (73)
T ss_dssp             SCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCC
T ss_pred             CEEecCCCEECCCCCeEeEecCCeEEEeeccCCCCCCCCCceecCCCcCCcCC
Confidence            88999999999999999999999999999999854 35555555666666653

>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.047  Score=29.73  Aligned_cols=36  Identities=31%  Similarity=0.678  Sum_probs=26.9

Q ss_pred             CcceeeCCEEecCCCeecc---CCcceeEECCCC--ceeec
Q psy10996        122 PSGCTVGNVTYQENQEWRL---DACTSCVCKDRS--HHCTQ  157 (192)
Q Consensus       122 ~~~C~~~g~~y~~G~~w~~---~~C~~C~C~~g~--v~C~~  157 (192)
                      ..+|..+|+.|..|++|..   ..=-+|+|..|.  +.|..
T Consensus         2 ~~gC~dnGk~Y~v~~QWer~YlGs~l~CTC~Gg~~G~~C~s   42 (44)
T d1o9aa1           2 KPGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES   42 (44)
T ss_dssp             CSSCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEE
T ss_pred             CCccccCCeEEecchhhhhhhcCCeEEEEEccCccceecCc
Confidence            3689999999999999974   344467887544  67764

>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.21  Score=26.40  Aligned_cols=33  Identities=21%  Similarity=0.629  Sum_probs=26.6

Q ss_pred             eee-CCEEecCCCeecc---CCcceeEECCCCceeec
Q psy10996        125 CTV-GNVTYQENQEWRL---DACTSCVCKDRSHHCTQ  157 (192)
Q Consensus       125 C~~-~g~~y~~G~~w~~---~~C~~C~C~~g~v~C~~  157 (192)
                      |.. .|..|..|..|..   ..-.+|+|..+.|.|..
T Consensus         4 C~Td~Gv~Y~~GmrW~~tQGskqMlCTClgnGisC~E   40 (41)
T d1e88a3           4 CVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQE   40 (41)
T ss_dssp             EEETTTEEECSSEEEEEESSSSEEEEEECSSSCCCEE
T ss_pred             cCccCCeEEecchhhhhhcCcceeEEeeeCCceeccc
Confidence            444 4899999999964   47889999988888764

>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.23  Score=27.12  Aligned_cols=33  Identities=27%  Similarity=0.720  Sum_probs=24.4

Q ss_pred             eeeCCEEecCCCeecc-C----CcceeEEC---CCCceeec
Q psy10996        125 CTVGNVTYQENQEWRL-D----ACTSCVCK---DRSHHCTQ  157 (192)
Q Consensus       125 C~~~g~~y~~G~~w~~-~----~C~~C~C~---~g~v~C~~  157 (192)
                      |..+|+.|..|++|.. .    .=..|+|.   .|.+.|..
T Consensus         2 C~d~g~~Y~VGe~Wer~~d~~g~m~~CtC~G~GrG~~~Cd~   42 (43)
T d2cg7a1           2 CHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKP   42 (43)
T ss_dssp             EEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEE
T ss_pred             ceeCCcEEEcCCEEeeccccCCcEEEEEEecCCcccEEecc
Confidence            6678999999999964 2    23469997   46777764

>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}

class: Small proteins
fold: PMP inhibitors
superfamily: PMP inhibitors
family: PMP inhibitors
domain: Protease inhibitor PMP-C
species: Migratory locust (Locusta migratoria) [TaxId: 7004]

Probab=87.46  E-value=0.52  Score=23.62  Aligned_cols=29  Identities=28%  Similarity=0.849  Sum_probs=23.5

Q ss_pred             cCCCEEecCCCeeeEECCC--ceEEeeecCCC
Q psy10996          6 ENGTSWLSADCEECKCERG--IKFCSKVECPK   35 (192)
Q Consensus         6 ~~G~~w~~~~C~~C~C~~g--~v~C~~~~Cp~   35 (192)
                      .+|.+|. +.|.+|.|..+  ...|..+.||.
T Consensus         4 ~pg~tfk-~kcntcrc~s~gksaactlkacp~   34 (34)
T d1gl1i_           4 EPGKTFK-DKCNTCRCGADGKSAACTLKACPN   34 (34)
T ss_dssp             CTTCEEE-CSSSEEEECTTSSCEEEECCCCCC
T ss_pred             cCCCccc-cccceeeecCCCcccceeeccCCC
Confidence            5788998 69999999653  68899988873

>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.23  Score=26.24  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             CCceecCCCEEec---CCCeeeEECCCceEEee
Q psy10996          1 MNESCENGTSWLS---ADCEECKCERGIKFCSK   30 (192)
Q Consensus         1 ~G~~y~~G~~w~~---~~C~~C~C~~g~v~C~~   30 (192)
                      .|..|..|.+|..   ..-.+|+|..+.+.|..
T Consensus         8 ~Gv~Y~~GmrW~~tQGskqMlCTClgnGisC~E   40 (41)
T d1e88a3           8 SGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQE   40 (41)
T ss_dssp             TTEEECSSEEEEEESSSSEEEEEECSSSCCCEE
T ss_pred             CCeEEecchhhhhhcCcceeEEeeeCCceeccc
Confidence            3789999999977   45668999999888764

>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.39  Score=25.95  Aligned_cols=30  Identities=17%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CceecCCCEEec---CCCeeeEECCCc--eEEeee
Q psy10996          2 NESCENGTSWLS---ADCEECKCERGI--KFCSKV   31 (192)
Q Consensus         2 G~~y~~G~~w~~---~~C~~C~C~~g~--v~C~~~   31 (192)
                      |+.|+.|++|+.   ..=..|+|..+.  +.|+.+
T Consensus         9 Gk~Y~v~~QWer~YlGs~l~CTC~Gg~~G~~C~sK   43 (44)
T d1o9aa1           9 GKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK   43 (44)
T ss_dssp             SCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC
T ss_pred             CeEEecchhhhhhhcCCeEEEEEccCccceecCcC
Confidence            789999999987   334578887764  777754

>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]}

class: Small proteins
fold: PMP inhibitors
superfamily: PMP inhibitors
family: PMP inhibitors
domain: Protease inhibitor PMP-D2V
species: Migratory locust (Locusta migratoria) [TaxId: 7004]

Probab=82.47  E-value=0.81  Score=22.57  Aligned_cols=26  Identities=27%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             CCCeeccCCcceeEEC-CCCceeecccc
Q psy10996        134 ENQEWRLDACTSCVCK-DRSHHCTQRIC  160 (192)
Q Consensus       134 ~G~~w~~~~C~~C~C~-~g~v~C~~~~C  160 (192)
                      +|+.-+. +|.+|.|. .|.+.|+++-|
T Consensus         4 pg~tkk~-dcntc~ct~tgvw~ct~~gc   30 (32)
T d1gl0i_           4 PGQVKQQ-DCNTCTCTPTGVWGCTLMGC   30 (32)
T ss_dssp             TTCEEEC-SSCEEEECTTSCEEEECCCC
T ss_pred             CCccccc-cCCeeeecCCcEEEEEeccc
Confidence            4555444 89999997 69999999776