Psyllid ID: psy11011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccccccccccEEEEEcHHHccccHHHHHHcEEEEEEEEEEcccEEEEEEEccccccHHHHHcccccEEEEEEEEEEEEccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccEEcccccccEEEEEEEHHccccccHHHHHEEEEEEEHHccccccccccccccccHHHHHHHHHHHHHHHHHcccEEccccEEEEEEEEEEEccccccEEEEEEEEccEEEEEEEEc
Coil and Loop (DISEMBL)
mftnkqvgKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEdvqghnvltnfhgmdlTTDKLRSMVKKWQTLIEANvdvkttdgYLLRLFCIGfthkdqlsqrkTCYAQHNQIKIKVTIG
Flexible Loop (DISEMBL)
mftnkqvgktlvnrtqgtkiaseglkhRVFEVSLADLQSDQDAERSFRKFRLIAedvqghnvltnfhgmdlTTDKLRSMVKKWQTLIEanvdvkttdgYLLRLFCIGFTHKDQLSQRktcyaqhnqikikvtig
Low Complexity Region (SEG)
MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Disordered region (IsUnstruct)
************************LKHRVFEVSLA**********SFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKV***
Disordered Region (DISOPRED)
MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Disordered Region (DISEMBL)
MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Disordered Region (DISPRO)
*FTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVTIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q5G5C4	263	40S ribosomal protein S3a	N/A	N/A	0.955	0.486	0.890	4e-65
Q6EV04	267	40S ribosomal protein S3a	N/A	N/A	0.955	0.479	0.890	9e-65
A6YPJ8	262	40S ribosomal protein S3a	N/A	N/A	0.955	0.488	0.882	3e-64
Q95V35	264	40S ribosomal protein S3a	N/A	N/A	0.955	0.484	0.867	2e-62
A5JSW9	263	40S ribosomal protein S3a	N/A	N/A	0.955	0.486	0.859	7e-62
Q1HRR3	270	40S ribosomal protein S3a	N/A	N/A	0.955	0.474	0.859	3e-61
Q64FN2	263	40S ribosomal protein S3a	N/A	N/A	0.955	0.486	0.851	6e-61
B6DDU1	269	40S ribosomal protein S3a	N/A	N/A	0.955	0.475	0.843	5e-60
B0WN96	270	40S ribosomal protein S3a	N/A	N/A	0.955	0.474	0.851	5e-60
Q56FG9	266	40S ribosomal protein S3a	N/A	N/A	0.955	0.481	0.851	8e-60

>sp|Q5G5C4|RS3A_PERAM 40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1

 Score =  246 bits (627), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF  +Q+GKTLVNRTQGTKIASEGLK+RVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFATRQIGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQ+SQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Periplaneta americana (taxid: 6978)

>sp|Q6EV04|RS3A_BIPLU 40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1

 Score =  244 bits (624), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF  +QVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFATRQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQ+LIEA+ DVKTTDGYLLR+FCIGFT+KDQLSQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Biphyllus lunatus (taxid: 197003)

>sp|A6YPJ8|RS3A_TRIIF 40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1

 Score =  243 bits (619), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/128 (88%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFT +Q+GKTLVNRTQGTKIASEGLK RVFEVSLADLQ+D DAERS+RKFRLIAEDVQ  
Sbjct: 38  MFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQAR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDV+TTDGYLLR+FCIGFT+KDQLSQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Triatoma infestans (taxid: 30076)

>sp|Q95V35|RS3A_SPOFR 40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1

 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 119/128 (92%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFT +QVG TLVNRTQGTKIASEGLK RVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVL NFHGMDLTTDKLR MVKKWQTL+EAN+DVKTTDGYLLR+FCIGFT+KD LSQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKLRWMVKKWQTLVEANIDVKTTDGYLLRVFCIGFTNKDSLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Spodoptera frugiperda (taxid: 7108)

>sp|A5JSW9|RS3A_BOMMA 40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1

 Score =  235 bits (599), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 119/128 (92%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF+ +QVG TLVNRTQGTKIASEGLK RVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVL NFHGMDLTTDKLR MVKKWQTLIEAN+DVKTTDGY+LR+FCIGFT+KD LSQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Bombyx mandarina (taxid: 7092)

>sp|Q1HRR3|RS3A_AEDAE 40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1

 Score =  233 bits (593), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 120/128 (93%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF+N+QVGKTLVNRTQGT+IAS+GLK RVFEVSLADLQ+D DAERSFRKF+LIAEDV G 
Sbjct: 38  MFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVL NFHGMDLTTDKLRSMVKKWQTLIE +VDVKTTDGYLLR+FCIGFT KD +SQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH+QIK
Sbjct: 158 YAQHSQIK 165

Aedes aegypti (taxid: 7159)

>sp|Q64FN2|RS3A_BOMMO 40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1

 Score =  232 bits (591), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 118/128 (92%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF+ +QVG TLVNRTQGTKIASEGLK RVFEVSLADLQ+D DAERSFRKFRLIAE VQG 
Sbjct: 38  MFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVL NFHGMDLTTDKLR MVKKWQTLIEAN+DVKTTDGY+LR+FCIGFT+KD LSQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Bombyx mori (taxid: 7091)

>sp|B6DDU1|RS3A_ANODA 40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1

 Score =  229 bits (583), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 119/128 (92%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF N+QVGKTLVNRTQGT+IAS+GLK RVFEVSLADLQ++QDAERSFRKF+LIAE V G 
Sbjct: 38  MFKNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNEQDAERSFRKFKLIAESVNGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           +VL NFHGMDLTTDKLRSMVKKWQTLIE +VDVKTTDGYLLR+FCIGFT KD +SQRKTC
Sbjct: 98  DVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH+QIK
Sbjct: 158 YAQHSQIK 165

Anopheles darlingi (taxid: 43151)

>sp|B0WN96|RS3A_CULQU 40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2

 Score =  229 bits (583), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 119/128 (92%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF+ +QVGKTLVNRTQGT+IAS+GLK RVFEVSLADLQ+D DAERSFRKF+LIAEDV G 
Sbjct: 38  MFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVL NFHGMDLTTDKLRSMVKKWQTLIE +VDVKTTD YLLR+FCIGFT KDQ+SQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH+QIK
Sbjct: 158 YAQHSQIK 165

Culex quinquefasciatus (taxid: 7176)

>sp|Q56FG9|RS3A_LYSTE 40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 117/128 (91%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFT +QVGKTLVNRTQGTKIASEGLK RV EVSLADLQSD DAERSFRKFRLI EDVQ  
Sbjct: 38  MFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           +VL NFHGMDLTTDKLRSMVKKWQTLIEA+VDVKTTDGYLLR+FCIGFT KDQ+S RKT 
Sbjct: 98  SVLCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTS 157

Query: 121 YAQHNQIK 128
           YAQH+Q++
Sbjct: 158 YAQHSQVR 165

Lysiphlebus testaceipes (taxid: 77504)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
307203090	267	40S ribosomal protein S3a [Harpegnathos	0.955	0.479	0.929	9e-65
307211549	267	40S ribosomal protein S3a [Harpegnathos	0.955	0.479	0.929	9e-65
332021354	267	40S ribosomal protein S3a [Acromyrmex ec	0.955	0.479	0.929	1e-64
307176724	267	40S ribosomal protein S3a [Camponotus fl	0.955	0.479	0.929	1e-64
74901606	263	RecName: Full=40S ribosomal protein S3a	0.955	0.486	0.890	3e-63
74910270	267	RecName: Full=40S ribosomal protein S3a	0.955	0.479	0.890	6e-63
70909477	268	ribosomal protein S3Ae [Timarcha baleari	0.955	0.477	0.890	7e-63
66547340	267	PREDICTED: 40S ribosomal protein S3a [Ap	0.955	0.479	0.906	1e-62
383859003	267	PREDICTED: 40S ribosomal protein S3a-lik	0.955	0.479	0.906	2e-62
269969616	262	RecName: Full=40S ribosomal protein S3a	0.955	0.488	0.882	2e-62

>gi|307203090|gb|EFN82270.1| 40S ribosomal protein S3a [Harpegnathos saltator]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/128 (92%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF N+QVGKTLVNRTQGTKIASEGLK RVFEVSLADLQSDQDAERSFRKFRLIAEDVQG 
Sbjct: 38  MFANRQVGKTLVNRTQGTKIASEGLKFRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211549|gb|EFN87627.1| 40S ribosomal protein S3a [Harpegnathos saltator]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/128 (92%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF N+QVGKTLVNRTQGTKIASEGLK RVFEVSLADLQSDQDAERSFRKFRLIAEDVQG 
Sbjct: 38  MFANRQVGKTLVNRTQGTKIASEGLKFRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021354|gb|EGI61728.1| 40S ribosomal protein S3a [Acromyrmex echinatior]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/128 (92%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF N+QVGKTLVNRTQGTKIASEGLK RVFEVSLADLQSDQDAERSFRKFRLIAEDVQG 
Sbjct: 38  MFANRQVGKTLVNRTQGTKIASEGLKFRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176724|gb|EFN66139.1| 40S ribosomal protein S3a [Camponotus floridanus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/128 (92%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF N+QVGKTLVNRTQGTKIASEGLK RVFEVSLADLQSDQDAERSFRKFRLIAEDVQG 
Sbjct: 38  MFANRQVGKTLVNRTQGTKIASEGLKFRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74901606|sp|Q5G5C4.1|RS3A_PERAM RecName: Full=40S ribosomal protein S3a gi|57869784|gb|AAW57773.1| Parcxpwex01 [Periplaneta americana]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF  +Q+GKTLVNRTQGTKIASEGLK+RVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFATRQIGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQ+SQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74910270|sp|Q6EV04.1|RS3A_BIPLU RecName: Full=40S ribosomal protein S3a gi|50344458|emb|CAH04315.1| S3Ae ribosomal protein [Biphyllus lunatus]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF  +QVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFATRQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQ+LIEA+ DVKTTDGYLLR+FCIGFT+KDQLSQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909477|emb|CAJ17219.1| ribosomal protein S3Ae [Timarcha balearica]

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 123/128 (96%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFT +QVGKTLVNRTQGTKIASEGLK+RVFEVSLADLQ+D DAERSFRKFRLIAEDVQG 
Sbjct: 38  MFTTRQVGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEA+ DVKT+DGYLLR+FCIGFT+KDQLSQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEASADVKTSDGYLLRVFCIGFTNKDQLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66547340|ref|XP_396741.2| PREDICTED: 40S ribosomal protein S3a [Apis mellifera] gi|340722992|ref|XP_003399883.1| PREDICTED: 40S ribosomal protein S3a-like [Bombus terrestris] gi|350423659|ref|XP_003493551.1| PREDICTED: 40S ribosomal protein S3a-like [Bombus impatiens] gi|380022797|ref|XP_003695223.1| PREDICTED: 40S ribosomal protein S3a-like [Apis florea]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFTN+ VGKTLVNRTQGTKIASEGLK+RVFEVSLADLQ+D DAERSFRKFRLIAEDVQ  
Sbjct: 38  MFTNRHVGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDGDAERSFRKFRLIAEDVQHR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859003|ref|XP_003704988.1| PREDICTED: 40S ribosomal protein S3a-like [Megachile rotundata]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFTN+ VGKTLVNRTQGTKIASEGLK+RVFEVSLADLQ+D DAERSFRKFRLIAEDVQ  
Sbjct: 38  MFTNRHVGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDGDAERSFRKFRLIAEDVQHR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLR+FCIGFT+KDQLS RKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQLSTRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q+K
Sbjct: 158 YAQHAQVK 165

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|269969616|sp|A6YPJ8.1|RS3A_TRIIF RecName: Full=40S ribosomal protein S3a gi|149689108|gb|ABR27894.1| 40S ribosomal protein S3a [Triatoma infestans]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/128 (88%), Positives = 122/128 (95%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MFT +Q+GKTLVNRTQGTKIASEGLK RVFEVSLADLQ+D DAERS+RKFRLIAEDVQ  
Sbjct: 38  MFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQAR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDV+TTDGYLLR+FCIGFT+KDQLSQRKTC
Sbjct: 98  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTC 157

Query: 121 YAQHNQIK 128
           YAQH Q++
Sbjct: 158 YAQHTQVR 165

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
FB|FBgn0017545	268	RpS3A "Ribosomal protein S3A"	0.955	0.477	0.789	2e-49
TAIR|locus:2139574	262	AT4G34670 [Arabidopsis thalian	0.932	0.477	0.740	1.3e-45
UNIPROTKB|F2Z4K7	264	RPS3A "Uncharacterized protein	0.932	0.473	0.734	5.6e-45
UNIPROTKB|Q56JV9	264	RPS3A "40S ribosomal protein S	0.932	0.473	0.734	5.6e-45
UNIPROTKB|F2Z4Q5	264	RPS3A "Uncharacterized protein	0.932	0.473	0.734	5.6e-45
UNIPROTKB|D6RAS7	125	RPS3A "40S ribosomal protein S	0.932	1.0	0.734	5.6e-45
UNIPROTKB|D6RAT0	227	RPS3A "40S ribosomal protein S	0.932	0.550	0.734	5.6e-45
UNIPROTKB|D6RB09	194	RPS3A "40S ribosomal protein S	0.932	0.644	0.734	5.6e-45
UNIPROTKB|D6RG13	223	RPS3A "40S ribosomal protein S	0.932	0.560	0.734	5.6e-45
UNIPROTKB|E9PFI5	205	RPS3A "40S ribosomal protein S	0.932	0.609	0.734	5.6e-45

FB|FBgn0017545 RpS3A "Ribosomal protein S3A" [Drosophila melanogaster (taxid:7227)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 101/128 (78%), Positives = 110/128 (85%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  +Q+GKTLVNRTQG +IAS+ LK RVFEVSLADLQ D D ERSFRKFRLIAEDVQ  
Sbjct:    38 MFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 97

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             NVL NFHGMDLTTDK RSMVKKWQTLIEA V+ KT DGYLLR+FCIGFT KDQ SQRKTC
Sbjct:    98 NVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTC 157

Query:   121 YAQHNQIK 128
             YAQ +Q++
Sbjct:   158 YAQQSQVR 165

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0022626 "cytosolic ribosome" evidence=NAS

GO:0048477 "oogenesis" evidence=NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

TAIR|locus:2139574 AT4G34670 [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 94/127 (74%), Positives = 108/127 (85%)

Query:     2 FTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61
             FTN+ VGKTLV+RTQGTKIASEGLKHRVFEVSLADLQ+D+D   ++RK RL AEDVQG N
Sbjct:    38 FTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRN 95

Query:    62 VLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCY 121
             VLT F GMD TTDKLRS+VKKWQTLIEA+VDVKTTDGY LR+FCI FT +     ++TCY
Sbjct:    96 VLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCY 155

Query:   122 AQHNQIK 128
             AQ +QI+
Sbjct:   156 AQSSQIR 162

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|F2Z4K7 RPS3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:    38 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 94

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    95 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 154

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   155 YAQHQQVR 162

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

UNIPROTKB|Q56JV9 RPS3A "40S ribosomal protein S3a" [Bos taurus (taxid:9913)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:    38 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 94

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    95 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 154

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   155 YAQHQQVR 162

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4Q5 RPS3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:    38 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 94

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    95 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 154

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   155 YAQHQQVR 162

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D6RAS7 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:     1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 57

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    58 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 117

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   118 YAQHQQVR 125

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|D6RAT0 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:     1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 57

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    58 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 117

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   118 YAQHQQVR 125

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|D6RB09 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:     1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 57

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    58 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 117

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   118 YAQHQQVR 125

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|D6RG13 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:    18 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 74

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    75 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 134

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   135 YAQHQQVR 142

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|E9PFI5 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
             MF  + +GKTLV RTQGTKIAS+GLK RVFEVSLADLQ+D+ A   FRKF+LI EDVQG 
Sbjct:    38 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA---FRKFKLITEDVQGK 94

Query:    61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
             N LTNFHGMDLT DK+ SMVKKWQT+IEA+VDVKTTDGYLLRLFC+GFT K     RKT 
Sbjct:    95 NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS 154

Query:   121 YAQHNQIK 128
             YAQH Q++
Sbjct:   155 YAQHQQVR 162

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29CU2	RS3A_DROPS	No assigned EC number	0.7890	0.9552	0.4776	yes	N/A
B0KW94	RS3A_CALJA	No assigned EC number	0.7322	0.9253	0.4696	yes	N/A
P49242	RS3A_RAT	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
A5B4K1	RS3A1_VITVI	No assigned EC number	0.7265	0.9402	0.4827	yes	N/A
Q42262	RS3A2_ARATH	No assigned EC number	0.7401	0.9328	0.4770	yes	N/A
Q642T2	RS3A_XENTR	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
P55830	RS3A_DROME	No assigned EC number	0.7890	0.9552	0.4776	yes	N/A
P97351	RS3A_MOUSE	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
B5FZS9	RS3A_TAEGU	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
P49397	RS3A_ORYSJ	No assigned EC number	0.7265	0.9402	0.4809	yes	N/A
Q56JV9	RS3A_BOVIN	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
P61247	RS3A_HUMAN	No assigned EC number	0.7343	0.9328	0.4734	yes	N/A
P52813	RS3A_ANOGA	No assigned EC number	0.8203	0.9552	0.4758	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam01015	195	pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family	1e-51
COG1890	214	COG1890, RPS1A, Ribosomal protein S3AE [Translatio	2e-33
PRK04057	203	PRK04057, PRK04057, 30S ribosomal protein S3Ae; Va	9e-16

>gnl|CDD|216245 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family

 Score =  161 bits (411), Expect = 1e-51
 Identities = 64/128 (50%), Positives = 78/128 (60%), Gaps = 18/128 (14%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
           MF ++++GKT  N         E LK RV EVSLADL    D  +S RK +   EDVQG 
Sbjct: 26  MFGSREIGKTPAND-------PEKLKGRVVEVSLADLT--GDYSKSNRKLKFKIEDVQGD 76

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           N LTNFHG +LT D LRS+V++W + IEA VDVKT DGYLLR+F I FT K         
Sbjct: 77  NALTNFHGHELTRDYLRSLVRRWTSKIEAIVDVKTKDGYLLRVFVIAFTKKR-------- 128

Query: 121 YAQHNQIK 128
            AQ +Q +
Sbjct: 129 -AQTSQKR 135

Length = 195

>gnl|CDD|224802 COG1890, RPS1A, Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (290), Expect = 2e-33
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 10/119 (8%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
            F   +VGKT  N         + L  RV EV+LADL  D    +S RK +   +DV+G 
Sbjct: 27  YFGGVEVGKTPAND-------PDKLIGRVVEVTLADLTGDFS--KSHRKLKFRIDDVEGD 77

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFT-HKDQLSQRK 118
             LT F G +LT D +RS+V++  + I+A VDVKT DGY+LR+  + FT  + + SQ++
Sbjct: 78  KALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKTKDGYVLRVKAMAFTRRRAKTSQKR 136

Length = 214

>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated

 Score = 69.9 bits (172), Expect = 9e-16
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 28  RVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLI 87
           RV E +L DL  D   +     F++   +V+G    T F G +LT D LRS+V++  + I
Sbjct: 39  RVVETTLGDLTGDFSKQNVKLYFKID--NVEGDKAYTRFIGHELTRDYLRSLVRRRTSKI 96

Query: 88  EANVDVKTTDGYLLRLFCIGFTHK 111
           +A VDV T DGY +R+  +  T K
Sbjct: 97  DAIVDVTTKDGYKVRVKPVALTTK 120

Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF01015	194	Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: I	100.0
PRK04057	203	30S ribosomal protein S3Ae; Validated	100.0
KOG1628|consensus	249		100.0
COG1890	214	RPS1A Ribosomal protein S3AE [Translation, ribosom	100.0
PF04083	63	Abhydro_lipase: Partial alpha/beta-hydrolase lipas	86.55

>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-49  Score=314.12  Aligned_cols=114  Identities=63%  Similarity=0.968  Sum_probs=97.4

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      +|+.+++|+||+++       +|.++||+||+|||||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        25 ~F~~~~iG~T~~~~-------~~~l~gRv~Evsl~DL~~d~~~--~~~K~~f~i~~V~g~~a~T~F~G~elt~D~lrSlv   95 (194)
T PF01015_consen   25 MFGNRNIGKTPANK-------PEKLKGRVFEVSLADLTNDFSK--AYRKFKFKIEDVQGNNALTNFHGMELTRDKLRSLV   95 (194)
T ss_dssp             TSSSSEECEEEEE--------CCCCCC-EEEEECHCCCSTTTT--SS-EEEEEEEEEETTEEEEEEEEEE--HHHHHHC-
T ss_pred             HhCcceeeEEEcCC-------cccccCeEEEEEHHHhcCchhh--hcEEEEEEEEeecCCEEEEEEcceecchhhhhcce
Confidence            69999999999999       7788999999999999999965  99999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      |||+|+||+++||+|+|||+|||||+|||+++         |++||+|+|+.
T Consensus        96 rk~~s~Ie~~~dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk  138 (194)
T PF01015_consen   96 RKWQSRIEAIVDVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRK  138 (194)
T ss_dssp             -TTC-EEEEEEEEEETTTEEEEEEEEEEE-------------TCHHHHHHHH
T ss_pred             eecceEEEEEEEEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHH
Confidence            99999999999999999999999999999998         88888888763

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.

>PRK04057 30S ribosomal protein S3Ae; Validated

Probab=100.00  E-value=1.3e-48  Score=310.91  Aligned_cols=114  Identities=34%  Similarity=0.465  Sum_probs=106.7

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      +|+.+++|+||+       .+++.++||++|+||+||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        19 ~F~~~~iG~T~a-------~~~~~l~GRv~EvsL~DL~~d~~~--~~~K~~f~i~~V~G~~a~T~F~G~~lTrD~lrSlV   89 (203)
T PRK04057         19 FFGGVEIGETPA-------DDPEKLIGRVVETTLGDLTGDFSK--QNVKLYFKIDNVEGDKAYTRFIGHELTRDYLRSLV   89 (203)
T ss_pred             ccCCceEEEEEc-------cChhhcCCcEEEEEHHHhcCChhh--ceEEEEEEEEeeeCCEEEEEEeeeEecHHHHHhHh
Confidence            699999999995       577778899999999999999966  89999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      |||+|+||+++||+|+|||+|||||+|||+++         |++||+|+|+.
T Consensus        90 rk~~S~Ie~~vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk  132 (203)
T PRK04057         90 RRRTSKIDAIVDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRK  132 (203)
T ss_pred             ccCceeEEEEEEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHH
Confidence            99999999999999999999999999999997         67778877764

>KOG1628|consensus

Probab=100.00  E-value=2.9e-49  Score=319.80  Aligned_cols=128  Identities=74%  Similarity=1.035  Sum_probs=124.9

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      ||+.||+|+||++||+|++.|++. +||+|||+|+||+||   |.+||||+|+++||+|+||+|+||||+||+|++|||+
T Consensus        36 ~~~~~~~~~~l~~~t~g~k~~~~~-~gr~~~v~~~dl~n~---e~afrK~kli~edvqgkN~lt~f~GmdlT~dK~~smv  111 (249)
T KOG1628|consen   36 MFPARNVGKTLVNRTQGTKGASDG-KGRVVEVSLADLQNE---EVAFRKFKLIAEDVQGKNCLTNFHGMDLTRDKLVSMV  111 (249)
T ss_pred             cccCCChhheeccccccccccccC-CCceeeechhhccch---hhhhheeeeeeccccCcccceeccCcchhhhhhhhhh
Confidence            699999999999999999999999 999999999999966   6799999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      +||+++|||+++|+|.|||+|||||++||+++++|.+||||||+||+++|++
T Consensus       112 kKwqt~ieA~v~vkT~dgy~Lrlf~i~ftkk~~nqv~ktsyaq~~qv~~irk  163 (249)
T KOG1628|consen  112 KKWQTLIEAVVDVKTTDGYLLRLFCIGFTKKLVNQVKKTSYAQHGQVRQIRK  163 (249)
T ss_pred             hhhhheeeeeEEeecccCceEEeeehHHHHHhhcccCCceeeecchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.6e-43  Score=277.99  Aligned_cols=103  Identities=42%  Similarity=0.626  Sum_probs=95.8

Q ss_pred             ccccceeCCcCcc--ceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccccceeeeEEEEE
Q psy11011         14 RTQGTKIASEGLK--HRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANV   91 (134)
Q Consensus        14 rt~G~~~A~d~lk--GRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrk~~s~Ie~~v   91 (134)
                      +..|++||+||.+  ||++|++|+|||||+++  +|+|++|+|++|+|++|+|.|+|||||+||+|||||||+|+||+++
T Consensus        31 ~~vG~t~a~dp~~ligR~vEvtl~DLtgd~~~--~~~K~~FrI~~v~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~  108 (214)
T COG1890          31 VEVGKTPANDPDKLIGRVVEVTLADLTGDFSK--SHRKLKFRIDDVEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIV  108 (214)
T ss_pred             cccccccccChHHhhCceEEEEHHHhcCCccc--ceEEEEEEEeeccCcEeeEEEeccchhHHHHHHHHhcccceeeeEE
Confidence            4456777888865  99999999999999977  8999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEEEEEeeeccCcccc
Q psy11011         92 DVKTTDGYLLRLFCIGFTHKDQLSQRK  118 (134)
Q Consensus        92 dVkT~DGy~lRvf~i~fT~kr~~~~~k  118 (134)
                      ||+|+|||.||||++|||.+|+++||+
T Consensus       109 dVkTkDGy~~RV~~~~~T~~ra~tSqk  135 (214)
T COG1890         109 DVKTKDGYVLRVKAMAFTRRRAKTSQK  135 (214)
T ss_pred             EEEecCCcEEEEEEEEEEehhcccchH
Confidence            999999999999999999999666654

>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function

Probab=86.55  E-value=1.7  Score=28.61  Aligned_cols=18  Identities=44%  Similarity=0.691  Sum_probs=13.9

Q ss_pred             EEEEEeCCCcEEEEEEEE
Q psy11011         90 NVDVKTTDGYLLRLFCIG  107 (134)
Q Consensus        90 ~vdVkT~DGy~lRvf~i~  107 (134)
                      ...|.|.|||.|-++=|-
T Consensus        14 ~h~V~T~DGYiL~l~RIp   31 (63)
T PF04083_consen   14 EHEVTTEDGYILTLHRIP   31 (63)
T ss_dssp             EEEEE-TTSEEEEEEEE-
T ss_pred             EEEEEeCCCcEEEEEEcc
Confidence            357999999999999863

The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3u5c_B	255	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-38
2xzm_4	265	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-32
3zey_0	256	High-resolution Cryo-electron Microscopy Structure		2e-31
3j20_A	198	Promiscuous Behavior Of Proteins In Archaeal Riboso		6e-08

>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 255

Iteration: 1
 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 2/127 (1%)
Query: 2   FTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61
           F N+ VGKTLVN++ G K AS+ LK RV EV LADLQ  +D   SFRK +L  ++VQG N
Sbjct: 38  FENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSED--HSFRKIKLRVDEVQGKN 95
Query: 62  VLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCY 121
           +LTNFHGMD TTDKLRSMV+KWQTLIEANV VKT+D Y+LR+F I FT K     ++  Y
Sbjct: 96  LLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSY 155
Query: 122 AQHNQIK 128
           AQ + I+
Sbjct: 156 AQSSHIR 162

>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 265

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 2   FTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61
           F++K  GKTLV ++ G +IASE +K RV E +LADL+ D   ++++RK +L+ ++V G N
Sbjct: 40  FSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSNDKAWRKVKLVIDEVDGRN 98
Query: 62  VLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQL---SQRK 118
             T+F+G+D+T D+L SM++KWQTLIEA VD KT DGY++R+F + FT K      S   
Sbjct: 99  AKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTS 158
Query: 119 TCYAQHNQIK 128
           TCYA+ +Q++
Sbjct: 159 TCYAKSSQVR 168

>pdb|3ZEY|0 Chain 0, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 256

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 88/127 (69%)
Query: 2   FTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61
           F  +Q  KT+ N+TQGTKIA++ L+ RV+E +LADL   Q+ + ++RK +   ++VQG N
Sbjct: 38  FEVRQFAKTICNKTQGTKIAADFLRGRVYEGNLADLNKTQNEDDAYRKVKFTVQEVQGRN 97
Query: 62  VLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCY 121
           +LT FHGMD+T+D++  +++KW T IEA V+ KT DGY LRLF I FT K +    K CY
Sbjct: 98  LLTQFHGMDMTSDRVYYLLRKWCTTIEATVEAKTADGYGLRLFLIAFTKKQENQLSKNCY 157
Query: 122 AQHNQIK 128
           A+   +K
Sbjct: 158 AKTRLVK 164

>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 22  SEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVK 81
            E + +RV EV+L D+  D    +S  K      DV+G N  T F GM L    +RS+V+
Sbjct: 40  PEKVLNRVVEVTLKDVTGD--FTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVR 97
Query: 82  KWQTLIEANVDVKTTDGYLLRLFCIGFTHKD-QLSQRKTC 120
           +  T I+   ++ T DGY LR+  +    +  Q SQ +  
Sbjct: 98  RKTTRIDGIFNITTKDGYKLRVMAMAIAMRRIQTSQERAI 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	1e-47
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	3e-44

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Length = 255

 Score =  152 bits (386), Expect = 1e-47
 Identities = 77/128 (60%), Positives = 94/128 (73%), Gaps = 2/128 (1%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
            F N+ VGKTLVN++ G K AS+ LK RV EV LADLQ  +D   SFRK +L  ++VQG 
Sbjct: 37  TFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSED--HSFRKIKLRVDEVQGK 94

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
           N+LTNFHGMD TTDKLRSMV+KWQTLIEANV VKT+D Y+LR+F I FT K     ++  
Sbjct: 95  NLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHS 154

Query: 121 YAQHNQIK 128
           YAQ + I+
Sbjct: 155 YAQSSHIR 162

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Length = 265

 Score =  144 bits (365), Expect = 3e-44
 Identities = 61/131 (46%), Positives = 94/131 (71%), Gaps = 4/131 (3%)

Query: 1   MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
            F++K  GKTLV ++ G +IASE +K RV E +LADL+ +   ++++RK +L+ ++V G 
Sbjct: 39  PFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDN-SNDKAWRKVKLVIDEVDGR 97

Query: 61  NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKD---QLSQR 117
           N  T+F+G+D+T D+L SM++KWQTLIEA VD KT DGY++R+F + FT K    + S  
Sbjct: 98  NAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSST 157

Query: 118 KTCYAQHNQIK 128
            TCYA+ +Q++
Sbjct: 158 STCYAKSSQVR 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	100.0
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	100.0
3j20_A	198	30S ribosomal protein S3AE; archaea, archaeal, KIN	100.0

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4

Probab=100.00  E-value=1.4e-60  Score=390.24  Aligned_cols=130  Identities=48%  Similarity=0.827  Sum_probs=127.0

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCCh-hhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhcc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQ-DAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSM   79 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~-~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSl   79 (134)
                      ||+.+++|+|||+||+|+++|+|.++|||||||||||+||+ ++  +|+||+|+|++|+|++|+|+|||||||+||||||
T Consensus        39 ~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~--~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSl  116 (265)
T 2xzm_4           39 PFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDK--AWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSM  116 (265)
T ss_dssp             TSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTS--CCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHS
T ss_pred             ccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhh--cceEEEEEEEeecCCEEEEEEeeeeccHHHhhhh
Confidence            79999999999999999999999999999999999999998 54  8999999999999999999999999999999999


Q ss_pred             ccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecc---Ccccceeeeecceeeeeee
Q psy11011         80 VKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQ---LSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        80 Vrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~---~~~~kt~Ya~~sqi~~i~~  132 (134)
                      ||||+|+|||++||+|+|||+|||||||||++++   +|.+||||||+||+|+|+-
T Consensus       117 VrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRk  172 (265)
T 2xzm_4          117 IRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRR  172 (265)
T ss_dssp             CCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHH
T ss_pred             hcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHH
Confidence            9999999999999999999999999999999999   9999999999999999863

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B

Probab=100.00  E-value=3e-61  Score=392.89  Aligned_cols=130  Identities=59%  Similarity=0.898  Sum_probs=127.3

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      ||+.+++|+||++||||+++|+|.++|||||+|||||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        37 ~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~--~~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlV  114 (255)
T 3u5c_B           37 TFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDH--SFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMV  114 (255)
T ss_dssp             SSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTT--SSCEEEEECCCEETTEECCEEEEECCCHHHHHHHC
T ss_pred             ccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhh--hceEEEEEEEeecCCEEEEEEcceeechhhhhhhc
Confidence            7999999999999999999999999999999999999999965  89999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      |||+|+|||++||+|+|||+|||||||||+++++|.+||||||+||+|+|+-
T Consensus       115 rKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRk  166 (255)
T 3u5c_B          115 RKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRK  166 (255)
T ss_dssp             CTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHH
T ss_pred             cccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999863

>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.7e-52  Score=331.10  Aligned_cols=113  Identities=32%  Similarity=0.486  Sum_probs=108.3

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      +|+.+++|+||+++       +|.++|||||+|||||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        26 ~F~~~~iG~T~~~~-------~~~l~GRv~EvsL~DL~~d~~~--~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlV   96 (198)
T 3j20_A           26 FFGGVEVGLTPADD-------PEKVLNRVVEVTLKDVTGDFTK--SHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLV   96 (198)
T ss_dssp             SSSCCCCCEEEEES-------SSCCSSCEEEECCCSSTTHHHH--HCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHC
T ss_pred             hcCCceeEEEEccC-------cccccCeEEEEEHHHhcCChhh--heEEEEEEEEeccCCEEEEEEcceeechhhhhhhe
Confidence            79999999999999       5889999999999999999965  89999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKV  131 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~  131 (134)
                      |||+|+|||++||+|+|||+|||||+|||+++         ||+||+++|+
T Consensus        97 rk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IR  138 (198)
T 3j20_A           97 RRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIR  138 (198)
T ss_dssp             CSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHH
T ss_pred             ecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHH
Confidence            99999999999999999999999999999994         8899998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00