Psyllid ID: psy11028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPMT
Secondary Structure (PSIPRED)
cHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHEcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHEEccccccc
Coil and Loop (DISEMBL)
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKfpdalrpafprlkekledpdsgvqSAAVNVVCELArknpknylsLAPVFFKLMTTSSNNWMLIKIIKLFgaltpleprlgkkliEPLTNLIHRIISLscwtgikpmt
Flexible Loop (DISEMBL)
MLGYFIYLtstkpylrKKAVLMMYKVFLKFPDALRPAFPRLKekledpdsgvQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIislscwtgikpmt
Low Complexity Region (SEG)
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPMT
Disordered region (IsUnstruct)
**GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFP**************SAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI****
Disordered Region (DISOPRED)
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM*
Disordered Region (DISEMBL)
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK*********SAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPMT
Disordered Region (DISPRO)
*LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
P54362	1034	AP-3 complex subunit delt	yes	N/A	0.882	0.116	0.858	8e-58
O54774	1199	AP-3 complex subunit delt	yes	N/A	0.882	0.100	0.833	8e-57
O14617	1153	AP-3 complex subunit delt	yes	N/A	0.882	0.104	0.833	1e-56
Q865S1	1207	AP-3 complex subunit delt	yes	N/A	0.882	0.099	0.833	2e-56
Q54WN0	1143	AP-3 complex subunit delt	yes	N/A	0.919	0.109	0.574	9e-41
Q9UTL8	825	AP-3 complex subunit delt	yes	N/A	0.904	0.149	0.544	6e-36
Q08951	932	AP-3 complex subunit delt	yes	N/A	0.904	0.131	0.430	2e-28
Q9C744	869	AP-3 complex subunit delt	yes	N/A	0.904	0.141	0.455	1e-26
Q755A1	899	AP-3 complex subunit delt	yes	N/A	0.904	0.136	0.406	2e-26
Q80V94	1122	AP-4 complex subunit epsi	no	N/A	0.845	0.102	0.217	4e-05

>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1 SV=4

 Score =  221 bits (564), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 103/120 (85%), Positives = 114/120 (95%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           ++STKPYLR KAVLMMYKVFL++P+ALRPAFP+LKEKLEDPD GVQSAAVNV+CELARKN
Sbjct: 156 MSSTKPYLRMKAVLMMYKVFLRYPEALRPAFPKLKEKLEDPDPGVQSAAVNVICELARKN 215

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYL LAP+FFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 216 PKNYLPLAPIFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 275

May be a coat protein involved in the formation of specialized structures like pigment granules.
Drosophila melanogaster (taxid: 7227)

>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1

 Score =  218 bits (555), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Mus musculus (taxid: 10090)

>sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2

 Score =  217 bits (552), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Bos taurus (taxid: 9913)

>sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1 PE=3 SV=1

 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 108/134 (80%), Gaps = 9/134 (6%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           L++ K ++ K+A+ ++YK+FL++P++LRPAFP+L+EKL+DP+  V S +VNV+CELAR+N
Sbjct: 142 LSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREKLDDPEPSVVSCSVNVICELARRN 201

Query: 68  PKNYLSLAPVFFKLMTTSSNN-WMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
           PKNYL LAPV F+++T ++NN WMLIKI+KLF ALTP EPRLGKKLI+PLTN+I+   S+
Sbjct: 202 PKNYLPLAPVLFRILTNTTNNYWMLIKIVKLFAALTPHEPRLGKKLIDPLTNIINSSPSV 261

Query: 127 S--------CWTGI 132
           S        C TG+
Sbjct: 262 SLLYECIQTCITGM 275

Part of the AP-3 complex, an adaptor-related complex which is essential for the compartmentalization of the endocytic pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl5 PE=3 SV=2

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 95/123 (77%)

Query: 5   FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
            I L  + PY+RK+ +L++Y++ L++P+A+    P+L+E+L+DPD+ V +AAV+V+CELA
Sbjct: 141 LILLNHSVPYVRKRTILLLYRLCLQYPEAISACIPKLRERLDDPDTSVVNAAVSVICELA 200

Query: 65  RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
           R+ PKNYL  AP  F L+TTSSNNWMLIK+IKLF +LTP EPRL KKLI  LT++I    
Sbjct: 201 RRAPKNYLEFAPDLFHLLTTSSNNWMLIKLIKLFASLTPYEPRLVKKLIPSLTDIIENTH 260

Query: 125 SLS 127
           ++S
Sbjct: 261 AMS 263

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08951|AP3D_YEAST AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL5 PE=1 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 89/123 (72%)

Query: 5   FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
           F  L ST+PY+RKKA+  ++KVFL++P+ALR  F +   KL+D D  V SAAV+V+CEL+
Sbjct: 167 FTMLNSTRPYIRKKAITALFKVFLQYPEALRDNFDKFVSKLDDDDISVVSAAVSVICELS 226

Query: 65  RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
           +KNP+ ++ L+P+ ++++ T  NNW++I+++KLF  L+ +EP+L  KL+  +  L+   +
Sbjct: 227 KKNPQPFIQLSPLLYEILVTIDNNWIIIRLLKLFTNLSQVEPKLRAKLLPKILELMESTV 286

Query: 125 SLS 127
           + S
Sbjct: 287 ATS 289

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. Required for the transport via the ALP pathway, which directs the transport of the cargo proteins PHO8 and VAM3 to the vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/123 (45%), Positives = 84/123 (68%)

Query: 5   FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
           F  L S+K +++KKA+ ++ +VF K+ DA++  F RL E LE  D  + SA V V CELA
Sbjct: 152 FTLLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLETSDPQILSAVVGVFCELA 211

Query: 65  RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
            K+P++ L LAP F+K++  S NNW+LIK++K+F  L  +EPRLGKK+ EP+   + R +
Sbjct: 212 TKDPQSCLPLAPEFYKVLVDSRNNWVLIKVLKIFAKLALIEPRLGKKVAEPICEHMRRTV 271

Query: 125 SLS 127
           + S
Sbjct: 272 AKS 274

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q755A1|AP3D_ASHGO AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 86/123 (69%)

Query: 5   FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
           F+ L STKPY+RKKAV  ++KVFL++P+ LR  F +  ++LED D  V SA V+V+CEL+
Sbjct: 165 FLMLHSTKPYIRKKAVTALFKVFLQYPEGLRDNFEKFVDRLEDDDLSVVSATVSVICELS 224

Query: 65  RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
           + NP+ ++ L+P+ ++++    NNW++I+++KLF  L  +EP+L  K++  +  L+    
Sbjct: 225 KHNPQPFIQLSPILYQMLIKVDNNWVIIRLLKLFTNLAQIEPKLRVKILPNVLELMDSTT 284

Query: 125 SLS 127
           ++S
Sbjct: 285 AIS 287

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           L  +K  +R+KAVL +YK +L  P+ ++    + ++ L D D GV +A++++   + ++N
Sbjct: 176 LQHSKEIIRRKAVLALYKFYLIAPNQVQHIHTKFRKALCDRDVGVMAASLHIYLRMIKEN 235

Query: 68  PKNYLSLAPVFFKLMT--------------TSSNNWMLIKIIKLFGALTPLEPRLGKKLI 113
              Y  L   F  ++               +    W+ I+++++ G L   + R  + + 
Sbjct: 236 ASGYKDLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLRILGLLGKDDERTSELMY 295

Query: 114 EPLTNLIHR 122
           + L   + R
Sbjct: 296 DVLDESLRR 304

Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
383849410	1200	PREDICTED: AP-3 complex subunit delta-1-	0.882	0.1	0.933	1e-59
307189900	1111	AP-3 complex subunit delta-1 [Camponotus	0.882	0.108	0.933	1e-59
340711936	1189	PREDICTED: AP-3 complex subunit delta-1-	0.882	0.100	0.933	2e-59
350402396	1189	PREDICTED: AP-3 complex subunit delta-1-	0.882	0.100	0.933	2e-59
307204535	1197	AP-3 complex subunit delta-1 [Harpegnath	0.882	0.100	0.933	2e-59
328790270	1189	PREDICTED: AP-3 complex subunit delta-1	0.882	0.100	0.933	2e-59
380025614	1189	PREDICTED: LOW QUALITY PROTEIN: AP-3 com	0.882	0.100	0.933	2e-59
345494024	1174	PREDICTED: AP-3 complex subunit delta-1-	0.882	0.102	0.933	3e-59
322785824	1147	hypothetical protein SINV_04691 [Solenop	0.882	0.104	0.925	3e-59
332025161	1198	AP-3 complex subunit delta-1 [Acromyrmex	0.882	0.100	0.925	4e-59

>gi|383849410|ref|XP_003700338.1| PREDICTED: AP-3 complex subunit delta-1-like [Megachile rotundata]

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189900|gb|EFN74144.1| AP-3 complex subunit delta-1 [Camponotus floridanus]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711936|ref|XP_003394522.1| PREDICTED: AP-3 complex subunit delta-1-like [Bombus terrestris]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402396|ref|XP_003486469.1| PREDICTED: AP-3 complex subunit delta-1-like [Bombus impatiens]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204535|gb|EFN83215.1| AP-3 complex subunit delta-1 [Harpegnathos saltator]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790270|ref|XP_395563.4| PREDICTED: AP-3 complex subunit delta-1 [Apis mellifera]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025614|ref|XP_003696565.1| PREDICTED: LOW QUALITY PROTEIN: AP-3 complex subunit delta-1-like [Apis florea]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494024|ref|XP_001605245.2| PREDICTED: AP-3 complex subunit delta-1-like [Nasonia vitripennis]

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 129 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 188

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct: 189 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 248

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785824|gb|EFZ12443.1| hypothetical protein SINV_04691 [Solenopsis invicta]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/120 (92%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLG+KLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGRKLIEPLTNLIHSTSAMS 274

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025161|gb|EGI65341.1| AP-3 complex subunit delta-1 [Acromyrmex echinatior]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/120 (92%), Positives = 117/120 (97%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           LTSTKPYLRKKAVLMMYKVFL+FP+ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN
Sbjct: 155 LTSTKPYLRKKAVLMMYKVFLRFPEALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 214

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
           PKNYLSLAPVFFKLMTTS+NNWMLIKIIKLFGALTPLEPRLG+KLIEPLTNLIH   ++S
Sbjct: 215 PKNYLSLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGRKLIEPLTNLIHSTSAMS 274

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0001087	1034	g "garnet" [Drosophila melanog	0.882	0.116	0.858	1.2e-51
UNIPROTKB|E1BWK3	1153	AP3D1 "Uncharacterized protein	0.882	0.104	0.833	1.9e-50
UNIPROTKB|O14617	1153	AP3D1 "AP-3 complex subunit de	0.882	0.104	0.833	1.9e-50
MGI|MGI:107734	1199	Ap3d1 "adaptor-related protein	0.882	0.100	0.833	2.1e-50
UNIPROTKB|Q865S1	1207	AP3D1 "AP-3 complex subunit de	0.882	0.099	0.833	2.2e-50
UNIPROTKB|E1C262	1208	AP3D1 "Uncharacterized protein	0.882	0.099	0.833	2.2e-50
UNIPROTKB|E2QXV5	1216	AP3D1 "Uncharacterized protein	0.882	0.098	0.833	2.2e-50
ZFIN|ZDB-GENE-050208-437	1247	ap3d1 "adaptor-related protein	0.882	0.096	0.833	2.3e-50
WB|WBGene00000162	1251	apd-3 [Caenorhabditis elegans	0.882	0.095	0.8	6.8e-48
DICTYBASE|DDB_G0279537	1143	ap3d1 "delta adaptin" [Dictyos	0.882	0.104	0.611	2.2e-37

FB|FBgn0001087 g "garnet" [Drosophila melanogaster (taxid:7227)]

 Score = 545 (196.9 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 103/120 (85%), Positives = 114/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++STKPYLR KAVLMMYKVFL++P+ALRPAFP+LKEKLEDPD GVQSAAVNV+CELARKN
Sbjct:   156 MSSTKPYLRMKAVLMMYKVFLRYPEALRPAFPKLKEKLEDPDPGVQSAAVNVICELARKN 215

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYL LAP+FFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   216 PKNYLPLAPIFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 275

GO:0006726 "eye pigment biosynthetic process" evidence=IEP;IMP;IDA

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0008055 "ocellus pigment biosynthetic process" evidence=IDA

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0030131 "clathrin adaptor complex" evidence=ISS

GO:0030123 "AP-3 adaptor complex" evidence=NAS

GO:0005798 "Golgi-associated vesicle" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=NAS

GO:0007041 "lysosomal transport" evidence=TAS

GO:0007040 "lysosome organization" evidence=ISS

GO:0005795 "Golgi stack" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0005770 "late endosome" evidence=IDA

GO:0060967 "negative regulation of gene silencing by RNA" evidence=IMP

UNIPROTKB|E1BWK3 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 535 (193.4 bits), Expect = 1.9e-50, P = 1.9e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|O14617 AP3D1 "AP-3 complex subunit delta-1" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.9e-50, P = 1.9e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IDA

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0005215 "transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006726 "eye pigment biosynthetic process" evidence=TAS

GO:0061088 "regulation of sequestering of zinc ion" evidence=IMP

MGI|MGI:107734 Ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Mus musculus (taxid:10090)]

 Score = 535 (193.4 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0006829 "zinc ion transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IMP;TAS

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010008 "endosome membrane" evidence=ISO;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0019882 "antigen processing and presentation" evidence=IMP

GO:0030117 "membrane coat" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0043195 "terminal bouton" evidence=IDA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0048499 "synaptic vesicle membrane organization" evidence=IMP

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IMP

GO:0061088 "regulation of sequestering of zinc ion" evidence=ISO;TAS

UNIPROTKB|Q865S1 AP3D1 "AP-3 complex subunit delta-1" [Bos taurus (taxid:9913)]

 Score = 535 (193.4 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0061088 "regulation of sequestering of zinc ion" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E1C262 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 535 (193.4 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0061088 "regulation of sequestering of zinc ion" evidence=IEA

UNIPROTKB|E2QXV5 AP3D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 535 (193.4 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-050208-437 ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Danio rerio (taxid:7955)]

 Score = 535 (193.4 bits), Expect = 2.3e-50, P = 2.3e-50
 Identities = 100/120 (83%), Positives = 115/120 (95%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             ++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct:   155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH   ++S
Sbjct:   215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

WB|WBGene00000162 apd-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 512 (185.3 bits), Expect = 6.8e-48, P = 6.8e-48
 Identities = 96/120 (80%), Positives = 111/120 (92%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             L+ ++ Y RK+AVL++YK+FLK+PDALRP FPRLKEKLEDPD GVQS+AVNV+CELARKN
Sbjct:   155 LSCSRNYTRKRAVLLLYKIFLKYPDALRPTFPRLKEKLEDPDPGVQSSAVNVICELARKN 214

Query:    68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
             PKNYL+LAPVFFKLMTTSSNNWMLIKIIKLFGAL PLEPRLGKKL+EPLTNLI+   ++S
Sbjct:   215 PKNYLTLAPVFFKLMTTSSNNWMLIKIIKLFGALVPLEPRLGKKLLEPLTNLINSTSAMS 274

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

DICTYBASE|DDB_G0279537 ap3d1 "delta adaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 413 (150.4 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 74/121 (61%), Positives = 104/121 (85%)

Query:     8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
             L++ K ++ K+A+ ++YK+FL++P++LRPAFP+L+EKL+DP+  V S +VNV+CELAR+N
Sbjct:   142 LSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREKLDDPEPSVVSCSVNVICELARRN 201

Query:    68 PKNYLSLAPVFFKLMTTSSNN-WMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
             PKNYL LAPV F+++T ++NN WMLIKI+KLF ALTP EPRLGKKLI+PLTN+I+   S+
Sbjct:   202 PKNYLPLAPVLFRILTNTTNNYWMLIKIVKLFAALTPHEPRLGKKLIDPLTNIINSSPSV 261

Query:   127 S 127
             S
Sbjct:   262 S 262

GO:0030123 "AP-3 adaptor complex" evidence=IDA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54362	AP3D_DROME	No assigned EC number	0.8583	0.8823	0.1160	yes	N/A
Q9UTL8	AP3D_SCHPO	No assigned EC number	0.5447	0.9044	0.1490	yes	N/A
O54774	AP3D1_MOUSE	No assigned EC number	0.8333	0.8823	0.1000	yes	N/A
O14617	AP3D1_HUMAN	No assigned EC number	0.8333	0.8823	0.1040	yes	N/A
Q54WN0	AP3D_DICDI	No assigned EC number	0.5746	0.9191	0.1093	yes	N/A
Q865S1	AP3D1_BOVIN	No assigned EC number	0.8333	0.8823	0.0994	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-31

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score =  116 bits (292), Expect = 2e-31
 Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARK 66
           L    PY+RKKA L + K++ K PD +R    P LKE L D D GV SAAV ++ E+ RK
Sbjct: 122 LVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEI-RK 180

Query: 67  NPKNY-LSLAPVFFKLMT---TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
           N + Y   L P+  + +    T  N W+ +KI++L     P +PR  K+L+E + NL+ 
Sbjct: 181 NDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRYAPQDPREPKELLEDILNLLQ 239

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG1059|consensus	877		100.0
KOG1062|consensus	866		99.96
KOG1077|consensus	938		99.9
PTZ00429	746	beta-adaptin; Provisional	99.88
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.87
KOG1061|consensus	734		99.7
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.39
KOG1060|consensus	968		99.31
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.79
KOG1058|consensus	948		98.19
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.06
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.84
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.8
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.14
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.09
PTZ00429	746	beta-adaptin; Provisional	96.84
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.76
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.72
PRK09687	280	putative lyase; Provisional	96.49
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.45
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.43
PRK09687	280	putative lyase; Provisional	96.32
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.32
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.23
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.89
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.77
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.53
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	95.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.34
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.26
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.19
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.19
KOG2160|consensus	342		95.12
KOG1059|consensus	877		94.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.69
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.66
KOG0414|consensus	1251		94.61
KOG1062|consensus	866		94.31
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.31
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	94.06
KOG1060|consensus	968		94.02
KOG1020|consensus	1692		93.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	93.87
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	93.23
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	93.02
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.55
KOG0166|consensus	514		92.5
KOG0213|consensus	1172		92.45
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.45
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	92.08
KOG2171|consensus	1075		92.07
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	92.06
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.55
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	91.47
KOG2171|consensus	1075		91.15
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.02
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.69
COG5096	757	Vesicle coat complex, various subunits [Intracellu	90.1
KOG0166|consensus	514		89.72
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.64
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	89.34
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.2
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.2
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.17
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	89.01
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	88.99
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	88.77
KOG1824|consensus	1233		88.74
KOG2259|consensus	823		88.72
KOG1020|consensus	1692		88.67
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.51
KOG1078|consensus	865		88.46
COG1413	335	FOG: HEAT repeat [Energy production and conversion	87.64
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.46
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.82
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	86.76
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	85.93
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	85.92
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	85.73
KOG2023|consensus	885		85.25
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	85.02
KOG2023|consensus	885		84.99
KOG0414|consensus	1251		84.47
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	84.25
KOG1240|consensus	1431		84.15
KOG2956|consensus	516		84.06
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	83.21
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	83.12
KOG3723|consensus	851		83.09
COG5098	1128	Chromosome condensation complex Condensin, subunit	82.46
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	82.38
PF05804	708	KAP: Kinesin-associated protein (KAP)	82.36
KOG1991|consensus	1010		82.15
KOG0168|consensus	1051		81.85
KOG1242|consensus	569		81.46
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	81.05
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	80.98
KOG2274|consensus	1005		80.95
KOG2149|consensus	393		80.95
KOG1824|consensus	1233		80.24
KOG0212|consensus	675		80.09

>KOG1059|consensus

Probab=100.00  E-value=1.4e-33  Score=245.27  Aligned_cols=131  Identities=66%  Similarity=1.115  Sum_probs=129.2

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .||+.||+|++|||||||++.+||+|.+|||.+.+.++++++.|+|+||||++||++++||++++||+.|.+++|.|+++
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkl  226 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKL  226 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhc
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI  132 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~  132 (136)
                      |.++.|+|+.|||+|+|+.|.|.|||+.+|++|++.+++++|.|+|+++++
T Consensus       227 lttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYEC  277 (877)
T KOG1059|consen  227 LVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYEC  277 (877)
T ss_pred             HhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875

>KOG1062|consensus

Probab=99.96  E-value=7e-29  Score=217.61  Aligned_cols=124  Identities=23%  Similarity=0.361  Sum_probs=116.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc---chhhhHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVF   78 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~---~~~~lvp~l   78 (136)
                      +||.++|+|++|||||||++|++|++|+.||+++.|.+..+++|+|+||||+.+++.+++++|+.+|+   .|++++|.|
T Consensus       145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~l  224 (866)
T KOG1062|consen  145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSL  224 (866)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999885   699999999


Q ss_pred             HHHhc--------------cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028         79 FKLMT--------------TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        79 v~iL~--------------~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                      ++||+              +++|||+||+|||+|+.||.+|++..+...|.+.++.++++|
T Consensus       225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntds  285 (866)
T KOG1062|consen  225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDS  285 (866)
T ss_pred             HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccc
Confidence            99999              379999999999999999999988887788888888777665

>KOG1077|consensus

Probab=99.90  E-value=1.8e-23  Score=182.36  Aligned_cols=123  Identities=25%  Similarity=0.448  Sum_probs=114.5

Q ss_pred             hhhhhhc--CCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHH
Q psy11028          2 LGYFIYL--TSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV   77 (136)
Q Consensus         2 ~~V~klL--~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~   77 (136)
                      .||.|+|  .++.++|||||++|++|+||+.||++..  |++++..+|+|.|.||++|+.+++..+++++|+.|+.++|.
T Consensus       149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~  228 (938)
T KOG1077|consen  149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL  228 (938)
T ss_pred             hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH
Confidence            5888999  5689999999999999999999999974  89999999999999999999999999999999999999999


Q ss_pred             HHHHhc----------------cCCChhHHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhccc
Q psy11028         78 FFKLMT----------------TSSNNWMLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRII  124 (136)
Q Consensus        78 lv~iL~----------------~v~~pWlqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~~  124 (136)
                      .++.|.                .+|+||+|+|++|+|++|++ .|+.....+.|++..||+.++
T Consensus       229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~  292 (938)
T KOG1077|consen  229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQ  292 (938)
T ss_pred             HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccc
Confidence            999887                27999999999999999984 668889999999999998877

>PTZ00429 beta-adaptin; Provisional

Probab=99.88  E-value=1.5e-22  Score=180.18  Aligned_cols=134  Identities=21%  Similarity=0.232  Sum_probs=120.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      ..|.++++|.+|||||+|++|++|+|+.+|+.++  .|.+.+.++|+|+|++|+.+|++++.++.+.+|+.|.-..+.+.
T Consensus       143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~  222 (746)
T PTZ00429        143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVN  222 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            3578999999999999999999999999999986  58999999999999999999999999999999987755555555


Q ss_pred             HHhccC--CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028         80 KLMTTS--SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM  135 (136)
Q Consensus        80 ~iL~~v--~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~  135 (136)
                      +++..+  .+||.|+.||++|..+.|.+.+++..+++.+.+.|+++|+++|+.++|.+
T Consensus       223 ~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~i  280 (746)
T PTZ00429        223 RLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVV  280 (746)
T ss_pred             HHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            555543  58999999999999999999888999999999999999999999999964

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.87  E-value=1.2e-21  Score=165.34  Aligned_cols=132  Identities=33%  Similarity=0.610  Sum_probs=122.2

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK   80 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~   80 (136)
                      .+|.++++|++|||||||++|++|+|+.+|+.+++ +.+.+.++|.|+|++|+.+|+.++.++ +.+|+.+..+++.+++
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~  195 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR  195 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH
Confidence            46899999999999999999999999999999998 699999999999999999999999999 7788877789999999


Q ss_pred             Hhc---cCCChhHHHHHHHHhhhcCCCChHHH--hhhHHHHHHHHhccchhhhhhhccc
Q psy11028         81 LMT---TSSNNWMLIKIIKLFGALTPLEPRLG--KKLIEPLTNLIHRIISLSCWTGIKP  134 (136)
Q Consensus        81 iL~---~v~~pWlqikiLk~L~~l~~~e~~~~--~~l~e~l~~iL~~~~s~sv~~~~k~  134 (136)
                      .|.   +.++||+|++++++|+.+++.++...  ..+.+.+.+.+++++.+++..+++.
T Consensus       196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~  254 (526)
T PF01602_consen  196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL  254 (526)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            888   67999999999999999999999888  7899999999998888888777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1061|consensus

Probab=99.70  E-value=5.3e-17  Score=142.74  Aligned_cols=132  Identities=24%  Similarity=0.393  Sum_probs=118.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-chhhhHHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFFK   80 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-~~~~lvp~lv~   80 (136)
                      +.+++++.+||+||+|+.|+.++|+.+|+.+++  +.+.+.+++.|+||+|+.+|++.+.+|.+.+|+ ....+.+.+.+
T Consensus       126 l~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~  205 (734)
T KOG1061|consen  126 LLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLIN  205 (734)
T ss_pred             HHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHH
Confidence            568899999999999999999999999999985  899999999999999999999999999999985 44445555554


Q ss_pred             Hhc---cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028         81 LMT---TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM  135 (136)
Q Consensus        81 iL~---~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~  135 (136)
                      -+-   +-++.|.|+-||+.++.+.|.++++++.+.+.+.+.|+++++++|++++|++
T Consensus       206 ~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~  263 (734)
T KOG1061|consen  206 KLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVI  263 (734)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHH
Confidence            332   2389999999999999999999999999999999999999999999999974

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.39  E-value=1.4e-12  Score=116.24  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=113.3

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK   80 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~   80 (136)
                      -|.++++|++|||||+|++|+.++|+.+|+...+  ..+.+..++.|+||-|+.+|+..+.++..++...|..-+-..+.
T Consensus       131 ~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~  210 (757)
T COG5096         131 PIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIP  210 (757)
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence            4789999999999999999999999999999875  57888899999999999999999999988865555543333333


Q ss_pred             Hhc----cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028         81 LMT----TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM  135 (136)
Q Consensus        81 iL~----~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~  135 (136)
                      -|.    .+..+|+++-++..|....+..+..+....+.+...+++.++.+++.++|+.
T Consensus       211 ~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i  269 (757)
T COG5096         211 QLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVI  269 (757)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHH
Confidence            221    2345999999999999998888889999999999999999999999999973

>KOG1060|consensus

Probab=99.31  E-value=4.1e-12  Score=112.80  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=110.4

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .-|.++-.+..|||||.|++|+-|+|..+||-=....+.+..+|.|++|+|+.||+..+.++|-++-+..-+..-++-++
T Consensus       146 lAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~l  225 (968)
T KOG1060|consen  146 LAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRL  225 (968)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhh
Confidence            45788889999999999999999999999998888999999999999999999999999999988766555555667778


Q ss_pred             hccCCChhHHHHHHHHhhhcCC---CCh------------------------------HHHhhhHHHHHHHHhccchhhh
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTP---LEP------------------------------RLGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~---~e~------------------------------~~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      |.++ +.|.||-++..|..|+.   .+|                              ..-+-+++....+|++.|+++|
T Consensus       226 l~dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV  304 (968)
T KOG1060|consen  226 LPDV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV  304 (968)
T ss_pred             ccch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence            8886 99999999999988742   112                              1235688899999999999999


Q ss_pred             hhhc
Q psy11028        129 WTGI  132 (136)
Q Consensus       129 ~~~~  132 (136)
                      +.+.
T Consensus       305 mA~a  308 (968)
T KOG1060|consen  305 MAVA  308 (968)
T ss_pred             HHHH
Confidence            8764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.79  E-value=1.2e-07  Score=71.18  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=101.3

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNYLSLAPVFF   79 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~~~lvp~lv   79 (136)
                      +.+.++|++.+|.|||.|+.++.+++..+.-.+.+ .+..+..++.|+|+.|-..|..++.++... +|+.+.+..|.++
T Consensus        28 ~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i  107 (178)
T PF12717_consen   28 PNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI  107 (178)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            45778999999999999999999999998877776 458888899999999999999999999998 9999999999998


Q ss_pred             HHhccCC-ChhH-------HHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc---hhhhhh
Q psy11028         80 KLMTTSS-NNWM-------LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII---SLSCWT  130 (136)
Q Consensus        80 ~iL~~v~-~pWl-------qikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~---s~sv~~  130 (136)
                      .-|.+.. .|+.       -.+|++++-.+-.. .+..+++.+.+.+-+....   ...++.
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~~~~~~~~~~~~~~  168 (178)
T PF12717_consen  108 SSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRFLNAVVDEDERVLR  168 (178)
T ss_pred             HHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            8887631 2322       34667766655553 3446678888888777776   555543

>KOG1058|consensus

Probab=98.19  E-value=5e-06  Score=74.55  Aligned_cols=123  Identities=17%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             ChhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028          1 MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus         1 ~~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      |+-|..+|.|.++||||-|++|+..+|+..-+++++.-+-+.+-| .|.||+.--.|.-.+...-..+.-.|      +-
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y------l~  209 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY------LL  209 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH------HH
Confidence            577899999999999999999999999997777777666666555 58899988877655544433322222      22


Q ss_pred             HHhccC--CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhh
Q psy11028         80 KLMTTS--SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        80 ~iL~~v--~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~  130 (136)
                      +..-++  -++-+|.-|+.+.+.-+-.+|.+..+.++++++.|++++++ |.+
T Consensus       210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssa-V~f  261 (948)
T KOG1058|consen  210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSA-VIF  261 (948)
T ss_pred             hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCch-hhh
Confidence            222233  36888999999999888888999999999999999999654 444

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=1.9e-05  Score=66.97  Aligned_cols=129  Identities=16%  Similarity=0.227  Sum_probs=94.1

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .+|.+++.+++...||-+.+++-.+...+||.+--....+.+=|.++|+.+.+.|+..+..+.  +|+....+.|.+.+.
T Consensus        45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~l  122 (526)
T PF01602_consen   45 MEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKL  122 (526)
T ss_dssp             HHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHH
Confidence            367788888888888888888888888888866667777777788888888888888887776  666677777777777


Q ss_pred             hccCCChhHHHHHHHHhhhcCCCChHHHhh-hHHHHHHHHhccchhhhhhhcc
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTPLEPRLGKK-LIEPLTNLIHRIISLSCWTGIK  133 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~~e~~~~~~-l~e~l~~iL~~~~s~sv~~~~k  133 (136)
                      |.. ++|...-+-+-.+..+...+|...+. +.+.+.+.|...+..++.+|+.
T Consensus       123 l~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~  174 (526)
T PF01602_consen  123 LSD-PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALS  174 (526)
T ss_dssp             HHS-SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHH
T ss_pred             hcC-CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence            775 67777776665555555445555444 6888888887777666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.84  E-value=0.00016  Score=48.74  Aligned_cols=98  Identities=20%  Similarity=0.240  Sum_probs=76.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc---hh--
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---YL--   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~---~~--   72 (136)
                      .+.++|+++++.+|..|+.|+..+...+|+...     +.++.+.++|.|+|+.|..+++.++..++...+..   +.  
T Consensus        11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   90 (120)
T cd00020          11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA   90 (120)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC
Confidence            356788899999999999999999987766544     36889999999999999999999999999877542   11  


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGAL  101 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l  101 (136)
                      .+++.+.+.|.. .+...+-..+.+|..+
T Consensus        91 g~l~~l~~~l~~-~~~~~~~~a~~~l~~l  118 (120)
T cd00020          91 GGVPKLVNLLDS-SNEDIQKNATGALSNL  118 (120)
T ss_pred             CChHHHHHHHhc-CCHHHHHHHHHHHHHh
Confidence            357788887765 3666666666666554

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.80  E-value=0.00057  Score=51.25  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=75.2

Q ss_pred             ChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhH-HHHHHHhccCCChhH
Q psy11028         12 KPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-PVFFKLMTTSSNNWM   90 (136)
Q Consensus        12 ~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lv-p~lv~iL~~v~~pWl   90 (136)
                      +|.||--|+.++--++..+|.+++.+.+.+.+.|.|+|+.|=-.|+.++..+...+.-.++... ..+...|.. ++|..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D-~~~~I   79 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD-ENPEI   79 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC-CCHHH
Confidence            5789999999999999999999999999999999999999999999999999999876666544 666666654 56666


Q ss_pred             HHHHHHHhhhcCC
Q psy11028         91 LIKIIKLFGALTP  103 (136)
Q Consensus        91 qikiLk~L~~l~~  103 (136)
                      +-..-.+|..+..
T Consensus        80 r~~A~~~~~e~~~   92 (178)
T PF12717_consen   80 RSLARSFFSELLK   92 (178)
T ss_pred             HHHHHHHHHHHHH
Confidence            6555555555543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.14  E-value=0.0031  Score=40.88  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             hhhhhc-CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          3 GYFIYL-TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         3 ~V~klL-~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      ...+.| ++++++||..|+.++-++-.      +...+.+.+++.|+|+.|-.+++..+-.+..      .+.++.+.+.
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------~~~~~~L~~~   70 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALGRIGD------PEAIPALIKL   70 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------HHTHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence            345666 89999999999999883311      1467888889999999999999888776632      3477888888


Q ss_pred             hccCCChhHHHHHHHHh
Q psy11028         82 MTTSSNNWMLIKIIKLF   98 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L   98 (136)
                      +.+-+++..+-...+.|
T Consensus        71 l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   71 LQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HTC-SSHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHhhc
Confidence            87754444455444443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.09  E-value=0.0078  Score=52.14  Aligned_cols=111  Identities=20%  Similarity=0.241  Sum_probs=87.0

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh--
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL--   74 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l--   74 (136)
                      ..+.+.|.|+++.||.-|+-++.|+.+.....++     +.++.+...|.|.|.+|-.+|..++..++++.+. +..+  
T Consensus        80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~  158 (503)
T PF10508_consen   80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFD  158 (503)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhC
Confidence            3467889999999999999999999877655332     3688899999999999999999999999986543 3333  


Q ss_pred             ---HHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHH
Q psy11028         75 ---APVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIE  114 (136)
Q Consensus        75 ---vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e  114 (136)
                         .+.+.+.+.+ +++=...+++.++..++...+...+.+.+
T Consensus       159 ~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~  200 (503)
T PF10508_consen  159 SNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVN  200 (503)
T ss_pred             cchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence               5666666655 68888999999999998777665554443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PTZ00429 beta-adaptin; Provisional

Probab=96.84  E-value=0.0069  Score=55.09  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=76.7

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .||.+++++++.-+||=..+.+.+.-+..||..-..+..+.+=+.|+||-|-+.|+..+..|  ..|+....+.+.+.+.
T Consensus        71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~  148 (746)
T PTZ00429         71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRA  148 (746)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHH
Confidence            46777777777777777777777777777776655666677777777777777776655543  2344444555555555


Q ss_pred             hccCCChhHHHHHHHHhhhcCCCChHH--HhhhHHHHHHHHhccchhhhhhhcc
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTPLEPRL--GKKLIEPLTNLIHRIISLSCWTGIK  133 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~~e~~~--~~~l~e~l~~iL~~~~s~sv~~~~k  133 (136)
                      |.. ++|+.-=+-.=.+..+-..+|+.  ...+.+.+.+.|+..+..++-+|+.
T Consensus       149 L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~  201 (746)
T PTZ00429        149 VAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAA  201 (746)
T ss_pred             hcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHH
Confidence            554 56665432222222211122222  2345666667777777776666654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.76  E-value=0.013  Score=46.75  Aligned_cols=125  Identities=16%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhH--CCCCchhhHHHHHhhcC-C-CChhHHHHHHHHHHHHHhcCC--cchhhhHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLK--FPDALRPAFPRLKEKLE-D-PDSGVQSAAVNVVCELARKNP--KNYLSLAP   76 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~~v~~~~~~l~~lL~-D-~d~~V~~aal~l~~~l~~~~p--~~~~~lvp   76 (136)
                      -|.++|++++|.+|.+|.-|+.-+---  +.+.++.+++.+.+... + -|..+-.+++.++..+.-.+.  ......+|
T Consensus        58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~  137 (254)
T PF04826_consen   58 LIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIP  137 (254)
T ss_pred             HHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHH
Confidence            367889999999999999998855332  23344556666665443 2 378888999999999976553  34556799


Q ss_pred             HHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhh
Q psy11028         77 VFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        77 ~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      .++++|.. .+.-.|+..||+|..|+....-    ...+....+..++++..+..+
T Consensus       138 ~ll~LL~~-G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~  192 (254)
T PF04826_consen  138 DLLSLLSS-GSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKEN  192 (254)
T ss_pred             HHHHHHHc-CChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHH
Confidence            99998877 5778999999999999876321    233444566677777655443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.72  E-value=0.0057  Score=53.89  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=57.0

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      .+++-.|+=|+--+.|+|+..|++.+..++.+.++.+|.|.+|=..|+--+-.+|+.+|+...+.+..|+.+|.
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~  106 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ  106 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence            35788999999999999999999999999999999999999999999999999999998655555555555444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PRK09687 putative lyase; Provisional

Probab=96.49  E-value=0.036  Score=44.66  Aligned_cols=118  Identities=16%  Similarity=0.157  Sum_probs=60.6

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC-chhhHHHHHhh-cCCCChhHHHHHHHHHHHHHhcCCcch----------
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-LRPAFPRLKEK-LEDPDSGVQSAAVNVVCELARKNPKNY----------   71 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-v~~~~~~l~~l-L~D~d~~V~~aal~l~~~l~~~~p~~~----------   71 (136)
                      +.+++++.++.+|+-|+-++-.+=.  |+. .+..++.+..+ ++|+|+.|-.+++..+-+++...+...          
T Consensus        59 l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~  136 (280)
T PRK09687         59 AIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQIT  136 (280)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence            3455666666666666666555422  221 12334444444 456666666555555544432221110          


Q ss_pred             ---------------------hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028         72 ---------------------LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        72 ---------------------~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv  128 (136)
                                           ...++.+...|+. +++++.-.....|+.++..++    ...+.+...|+..+..+-
T Consensus       137 ~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR  209 (280)
T PRK09687        137 AFDKSTNVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIR  209 (280)
T ss_pred             hhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHH
Confidence                                 1235555555554 667777777777776654443    344555555555554433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.45  E-value=0.0078  Score=41.37  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVN   58 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~   58 (136)
                      +-|.++++++++-||--|+-|++.+.+...+.+-    +.++.+.+++.|.|++|-.++--
T Consensus        30 ~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~   90 (97)
T PF12755_consen   30 PPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAEL   90 (97)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence            4588999999999999999999999998776553    35788899999999999999843

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.43  E-value=0.037  Score=44.19  Aligned_cols=128  Identities=19%  Similarity=0.278  Sum_probs=90.1

Q ss_pred             hhcC-CCChHHHHHHHHHHHHHHhHCC---CCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--cchhhhHHH
Q psy11028          6 IYLT-STKPYLRKKAVLMMYKVFLKFP---DALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNYLSLAPV   77 (136)
Q Consensus         6 klL~-~s~~~VRKKA~l~~~rl~~~~P---~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p--~~~~~lvp~   77 (136)
                      .+|+ +.+|+++.+|..++... ..+|   +.+.+  .++.+.++|+++++.|-.-|+..+..++...+  ...+..++.
T Consensus        19 ~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~   97 (254)
T PF04826_consen   19 CLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQ   97 (254)
T ss_pred             HHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence            3444 57899999999888874 3344   34443  58999999999999999999988887765443  345567777


Q ss_pred             HHHHhcc-CCChhHHHHHHHHhhhcCCCC--hHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028         78 FFKLMTT-SSNNWMLIKIIKLFGALTPLE--PRLGKKLIEPLTNLIHRIISLSCWTGIKP  134 (136)
Q Consensus        78 lv~iL~~-v~~pWlqikiLk~L~~l~~~e--~~~~~~l~e~l~~iL~~~~s~sv~~~~k~  134 (136)
                      +.+.... ..+-.+|..-||+|..|+-.+  ...-.+.+..+.++|.+.+...=..++|+
T Consensus        98 Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   98 VCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHH
Confidence            7775444 357789999999999998544  23333345556678887766554455553

>PRK09687 putative lyase; Provisional

Probab=96.32  E-value=0.057  Score=43.52  Aligned_cols=96  Identities=9%  Similarity=0.014  Sum_probs=67.9

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .+...+|.|.+..||..|+.++..+=  .    +..++.+.+++.|.|+.|=..++..+-++..... .-....|.+..+
T Consensus        26 ~~L~~~L~d~d~~vR~~A~~aL~~~~--~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~~~~a~~~L~~l   98 (280)
T PRK09687         26 DELFRLLDDHNSLKRISSIRVLQLRG--G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-CQDNVFNILNNL   98 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcC--c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHH
Confidence            45678899999999999999976431  1    2355667888999999999999988888754321 123456666666


Q ss_pred             hccCCChhHHHHHHHHhhhcCCC
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTPL  104 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~~  104 (136)
                      +.+-++|...-.....|+.++..
T Consensus        99 ~~~D~d~~VR~~A~~aLG~~~~~  121 (280)
T PRK09687         99 ALEDKSACVRASAINATGHRCKK  121 (280)
T ss_pred             HhcCCCHHHHHHHHHHHhccccc
Confidence            55556666676677777766543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.32  E-value=0.057  Score=49.87  Aligned_cols=91  Identities=22%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      ++...|++.+|.||+.|+.++-++-.      +...+.|.++|+|+|+.|=.+++..+.++....+.     .+.+...|
T Consensus       625 ~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L  693 (897)
T PRK13800        625 ELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHL  693 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHh
Confidence            56678899999999999999987641      33567788999999999999999999888654332     34566666


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCC
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLE  105 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e  105 (136)
                      .. ++|+.+...++.|..+...+
T Consensus       694 ~~-~d~~VR~~A~~aL~~~~~~~  715 (897)
T PRK13800        694 GS-PDPVVRAAALDVLRALRAGD  715 (897)
T ss_pred             cC-CCHHHHHHHHHHHHhhccCC
Confidence            65 78888888888777665443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.23  E-value=0.071  Score=46.23  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCC--c-h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--L-R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v-~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~   73 (136)
                      .|..++.+.+..|.+.|+-++.++....+..  + + +....+.+++...|..|-.-+..++.++++.+++.+.     .
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            4678899999999999999999998765433  1 1 2378888888777888888999999999999987543     3


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISL  126 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~  126 (136)
                      +.+.+++-|++ .|.-+|...+.+|..++..+..    ....+.+.+.+.++.....
T Consensus       203 ll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d  258 (503)
T PF10508_consen  203 LLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED  258 (503)
T ss_pred             HHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence            78888888888 9999999999999999874321    2344667788887766443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.23  E-value=0.082  Score=35.22  Aligned_cols=92  Identities=17%  Similarity=0.143  Sum_probs=72.2

Q ss_pred             hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh
Q psy11028         36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK  110 (136)
Q Consensus        36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~  110 (136)
                      +.++.+.+.|.|.++.+...++..+..++..+|+...     ..+|.+.++|.. ++|=++...+.+|+.++...+...+
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence            3678899999999999999999999999988765322     568899998887 7999999999999999877643222


Q ss_pred             -----hhHHHHHHHHhccchhhh
Q psy11028        111 -----KLIEPLTNLIHRIISLSC  128 (136)
Q Consensus       111 -----~l~e~l~~iL~~~~s~sv  128 (136)
                           .+.+.+.+.++..+....
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~  108 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQ  108 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHH
Confidence                 357777888877654433

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.89  E-value=0.072  Score=36.24  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCC-CC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP-DA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK   69 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~   69 (136)
                      ++.+.++++.+.||=-|..-+.++++... ..  ++...+-+.+.|.|+|+=|-.+|+..+.+++..+|+
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            46678899999999999999999999876 22  223677888999999999999999999999999997

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.77  E-value=0.011  Score=31.92  Aligned_cols=28  Identities=14%  Similarity=0.083  Sum_probs=23.1

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK   29 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~   29 (136)
                      +-+.++++|+++.||+.|+.|+..+.+.
T Consensus         3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    3 PILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            4577899999999999999999888764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.53  E-value=0.014  Score=35.09  Aligned_cols=49  Identities=29%  Similarity=0.435  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHH
Q psy11028         13 PYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVC   61 (136)
Q Consensus        13 ~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~   61 (136)
                      |.||..|+.++-++.+..|+..+.    .++.+..+|+|.+..|-.++...+-
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            579999999999887777776664    5788889999999999888876553

...

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=95.41  E-value=0.27  Score=37.20  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=77.2

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHH-------HhhcCCCChhH---HHHHHHHHHHHHhcCCcch
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRL-------KEKLEDPDSGV---QSAAVNVVCELARKNPKNY   71 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l-------~~lL~D~d~~V---~~aal~l~~~l~~~~p~~~   71 (136)
                      -+.-|..++++.+|++|.-..-.+++++|+.++. +.+-+       +.+-.|...+.   ..+.++.+.++.+.+.+.-
T Consensus        49 ~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R  128 (187)
T PF12830_consen   49 TLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSR  128 (187)
T ss_pred             HhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhH
Confidence            3556778999999999999999999999998874 32332       23334444334   8889999999999776666


Q ss_pred             hhhHHHHHHHhccC----------CChhHHHHHHHHhhhcCCCChHHHhhhHHHH
Q psy11028         72 LSLAPVFFKLMTTS----------SNNWMLIKIIKLFGALTPLEPRLGKKLIEPL  116 (136)
Q Consensus        72 ~~lvp~lv~iL~~v----------~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l  116 (136)
                      ++++..+.+.+..-          ..-.....+...|+.++-....+.--++..+
T Consensus       129 ~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y~~~~E~l~vi~~i  183 (187)
T PF12830_consen  129 RKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLPYQTQDEVLYVIHHI  183 (187)
T ss_pred             HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence            67888888877642          2234455666667777655444444444433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.34  E-value=0.055  Score=34.82  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             HHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHH
Q psy11028         38 FPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPL  116 (136)
Q Consensus        38 ~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l  116 (136)
                      ++.+.+.| .|+|+.|-..++.++.++..      ...+|.+.+.++. ++|-.+......|+.++.      .+..+.+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~~------~~~~~~L   67 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKD-EDPMVRRAAARALGRIGD------PEAIPAL   67 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTS-SSHHHHHHHHHHHHCCHH------HHTHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC------HHHHHHH
Confidence            35677777 89999999998888774321      2679999999965 899999999999998862      4688888


Q ss_pred             HHHHhccchhhh
Q psy11028        117 TNLIHRIISLSC  128 (136)
Q Consensus       117 ~~iL~~~~s~sv  128 (136)
                      .+.+++.++..|
T Consensus        68 ~~~l~~~~~~~v   79 (88)
T PF13646_consen   68 IKLLQDDDDEVV   79 (88)
T ss_dssp             HHHHTC-SSHHH
T ss_pred             HHHHcCCCcHHH
Confidence            889988776554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.26  E-value=0.064  Score=47.42  Aligned_cols=120  Identities=15%  Similarity=0.256  Sum_probs=77.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      ...|..+.+..||+-|+-.+-.+++-+||.+....+-|.++|...|+..+.++=..+.++.+.+|...  +-.-+.+|+.
T Consensus        64 ~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t--L~~lf~~i~~  141 (556)
T PF05918_consen   64 QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT--LTGLFSQIES  141 (556)
T ss_dssp             HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH-
T ss_pred             HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHh
Confidence            35677889999999999999999999999999999999999999999999999999999999998632  2222233331


Q ss_pred             -cCCChhHHHHHHHHhh----hcCCC----ChHHHhhhHHHHHHHHhccch
Q psy11028         84 -TSSNNWMLIKIIKLFG----ALTPL----EPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        84 -~v~~pWlqikiLk~L~----~l~~~----e~~~~~~l~e~l~~iL~~~~s  125 (136)
                       ...++-.--++|++++    .++++    ..+..+-+.+.+..+|+..++
T Consensus       142 ~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTa  192 (556)
T PF05918_consen  142 SKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTA  192 (556)
T ss_dssp             --HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--H
T ss_pred             cccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccH
Confidence             1246666677777763    22221    134456677778888876444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.19  E-value=0.13  Score=39.18  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhh-HHHHHhhcCCCChhHHHHHHHHHHHHHhcCC---cch------h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNY------L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~-~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p---~~~------~   72 (136)
                      -+.+.+.+++..||..|..|+.-+++..+ ..... .+.+.....++++.|=..++..+..+....+   ..+      .
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~  176 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK  176 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence            46678889999999999999999999877 22334 7788889999999999999999999988777   222      2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGAL  101 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l  101 (136)
                      .+++.+.+.+.+ ++|=.--.--+.|..|
T Consensus       177 ~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  177 QLVKALVKLLSD-ADPEVREAARECLWAL  204 (228)
T ss_dssp             HHHHHHHHHHTS-S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHHHHHH
Confidence            344555555544 3444433334444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.19  E-value=0.31  Score=37.07  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      +.+.+++.+.-|-|.|+.++..++.....-++.    +++.+.+.+.|+...+-.+|...+..+++.-+ ....+...+.
T Consensus        58 i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l  136 (228)
T PF12348_consen   58 IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEIL  136 (228)
T ss_dssp             HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHH
Confidence            445677888889999999999999988776664    56788888899999999999999999999766 1123323333


Q ss_pred             HHhccCCChhHHHHHHHHhhhcCCCC----hH-----HHhhhHHHHHHHHhccchhh
Q psy11028         80 KLMTTSSNNWMLIKIIKLFGALTPLE----PR-----LGKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        80 ~iL~~v~~pWlqikiLk~L~~l~~~e----~~-----~~~~l~e~l~~iL~~~~s~s  127 (136)
                      ....+-.+|-.-...++.+..+-..-    +.     .-+.+.+.+...++.+++.+
T Consensus       137 ~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~V  193 (228)
T PF12348_consen  137 SQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEV  193 (228)
T ss_dssp             HHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHH
Confidence            33334467777777777766553211    11     12456777777776666543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2160|consensus

Probab=95.12  E-value=0.24  Score=41.40  Aligned_cols=104  Identities=20%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYLS   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~~   73 (136)
                      .+...++++++-+|.+|+-.+-...+.+|..-+.     +.+++.+.|. |.+-.|-+.|+..+..+.++++.   .|..
T Consensus       128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~  207 (342)
T KOG2160|consen  128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK  207 (342)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence            4566889999999999999999999999976653     5677877775 55667779999999999999985   4444


Q ss_pred             hHH--HHHHHhcc-CCChhHHHHHHHHhhhcCCCCh
Q psy11028         74 LAP--VFFKLMTT-SSNNWMLIKIIKLFGALTPLEP  106 (136)
Q Consensus        74 lvp--~lv~iL~~-v~~pWlqikiLk~L~~l~~~e~  106 (136)
                      +-+  -+...|.. -.+.-+|+|.+-+++.|...+.
T Consensus       208 ~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  208 LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            422  34444443 3688999999999998876554

>KOG1059|consensus

Probab=94.92  E-value=0.23  Score=45.21  Aligned_cols=111  Identities=17%  Similarity=0.323  Sum_probs=82.3

Q ss_pred             hcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-----------------CCc
Q psy11028          7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK-----------------NPK   69 (136)
Q Consensus         7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-----------------~p~   69 (136)
                      ++.++++..|=-+++|+.++...+|..|....+-+.+.|+|.|.|+=.=|+.++.+++.+                 +++
T Consensus       307 fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t  386 (877)
T KOG1059|consen  307 FIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGT  386 (877)
T ss_pred             hhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccch
Confidence            457899999999999999999999999999999999999999999999999999988654                 233


Q ss_pred             chh-hhHHHHHHHhcc------CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHH
Q psy11028         70 NYL-SLAPVFFKLMTT------SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI  120 (136)
Q Consensus        70 ~~~-~lvp~lv~iL~~------v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL  120 (136)
                      .|+ +++..+++|=..      ..=.|..--+..+-+.-+..   ...+|-|++.++-
T Consensus       387 ~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~---~G~~I~eQi~Dv~  441 (877)
T KOG1059|consen  387 NYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTR---HGSLIAEQIIDVA  441 (877)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccc---hhhHHHHHHHHHh
Confidence            343 344444444442      35689887777755544432   2345555555554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.69  E-value=0.38  Score=44.53  Aligned_cols=20  Identities=20%  Similarity=0.142  Sum_probs=11.3

Q ss_pred             hhcCCCChHHHHHHHHHHHH
Q psy11028          6 IYLTSTKPYLRKKAVLMMYK   25 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~r   25 (136)
                      +.|.++++.||+-|+.++.+
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~  740 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVS  740 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhc
Confidence            44555666666655555554

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.66  E-value=0.32  Score=39.12  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP   68 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p   68 (136)
                      ...+.|+++.||+.|+-|+--.+..+.+....+++-+.+.+...+..|-..++..++++...++
T Consensus        33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g   96 (298)
T PF12719_consen   33 LPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG   96 (298)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            3456899999999999999999999999999988888888876799999999999999988664

>KOG0414|consensus

Probab=94.61  E-value=0.12  Score=49.02  Aligned_cols=80  Identities=21%  Similarity=0.341  Sum_probs=68.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      ..+.|.+.++.|||.|++.+.+++..+==-+......+...|+|.+.++-.-|=+.+.|++.+. ....++.|.+...|.
T Consensus      1003 Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLS 1081 (1251)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhc
Confidence            3456789999999999999999999864455668899999999999999999999999998876 556678888888887


Q ss_pred             c
Q psy11028         84 T   84 (136)
Q Consensus        84 ~   84 (136)
                      +
T Consensus      1082 ~ 1082 (1251)
T KOG0414|consen 1082 N 1082 (1251)
T ss_pred             c
Confidence            5

>KOG1062|consensus

Probab=94.31  E-value=0.12  Score=47.38  Aligned_cols=129  Identities=15%  Similarity=0.120  Sum_probs=106.8

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      |-.||..+++-.-|+-..+++.=+....-|+.--....+++=|+.+|.=|+..|++.+..++  +|+..+.+.|.+.++|
T Consensus        74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll  151 (866)
T KOG1062|consen   74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLL  151 (866)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHH
Confidence            44677788888888888888887777777777777788888889999999999988877665  4678889999999999


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP  134 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~  134 (136)
                      +. ++|++-=|-.-....+-...|...+.+.......|...+-.++++++++
T Consensus       152 ~~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l  202 (866)
T KOG1062|consen  152 QH-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHL  202 (866)
T ss_pred             hC-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHH
Confidence            99 8999999988888888888898899999999999888776666666654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.31  E-value=0.86  Score=36.57  Aligned_cols=121  Identities=12%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----------hhhHHHHHhhcC--------CCChhHHHHHHHHHHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----------RPAFPRLKEKLE--------DPDSGVQSAAVNVVCELA   64 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----------~~~~~~l~~lL~--------D~d~~V~~aal~l~~~l~   64 (136)
                      =+..++.+..+.+|-+++.|+.++..+.|+..          +.+.+.+...|.        |....++.++..++..++
T Consensus       123 ~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~  202 (282)
T PF10521_consen  123 PILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLL  202 (282)
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence            36778899999999999999999999888655          225678888887        888999999999999997


Q ss_pred             hcC---C-cchhhhH-HHHHH-Hhcc---CCC---hhHHHHHHH----HhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028         65 RKN---P-KNYLSLA-PVFFK-LMTT---SSN---NWMLIKIIK----LFGALTPLEPRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        65 ~~~---p-~~~~~lv-p~lv~-iL~~---v~~---pWlqikiLk----~L~~l~~~e~~~~~~l~e~l~~iL~~~  123 (136)
                      +..   + ..+.... -.+-+ ||.+   ...   |=+..-+++    ++..+|..--+--++++..+.+++++-
T Consensus       203 ~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  203 KTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            742   1 1222222 22223 4443   233   444444444    444556555555667777777766543

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=94.06  E-value=0.12  Score=40.79  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             hcCCCChHHHHHHHHHHHHHHhHCCCCc------h-------hhHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028          7 YLTSTKPYLRKKAVLMMYKVFLKFPDAL------R-------PAFPRLKEKLEDPDSGVQSAAVNVVCELAR   65 (136)
Q Consensus         7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v------~-------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~   65 (136)
                      ||++.++.|-|+|+.|+..+|+..=+.+      +       .+.+.+.+++++.++||=.+++-.+..+.-
T Consensus         1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl   72 (239)
T PF11935_consen    1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL   72 (239)
T ss_dssp             HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            6889999999999999999988632222      2       245678888899999999999999888754

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>KOG1060|consensus

Probab=94.02  E-value=0.59  Score=43.09  Aligned_cols=122  Identities=15%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      ++|.|...+.+.-|||=-.+=+.|.-+..||+.---+..+++.|.|+|+-+=++|+.++..|--.      -++|-...-
T Consensus        74 p~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llA  147 (968)
T KOG1060|consen   74 PAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLA  147 (968)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHH
Confidence            68999999999999999999999999999999888899999999999999999999888665111      122322222


Q ss_pred             hcc---CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhh
Q psy11028         82 MTT---SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCW  129 (136)
Q Consensus        82 L~~---v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~  129 (136)
                      .+.   -++|+.-=-.=-.+..|-..+++...+|.|.+..+|......+|=
T Consensus       148 Ik~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvg  198 (968)
T KOG1060|consen  148 IKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVG  198 (968)
T ss_pred             HHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchh
Confidence            221   144443322222333344445555568888888888777665543

>KOG1020|consensus

Probab=93.95  E-value=0.47  Score=46.25  Aligned_cols=115  Identities=17%  Similarity=0.311  Sum_probs=80.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      +...|..+.+.+|=||.-|+.-+...+|..+.  +....+...++|+..+|==||+-++=...-.+|+    +++..|..
T Consensus       821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e----~~~qyY~~  896 (1692)
T KOG1020|consen  821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE----LIFQYYDQ  896 (1692)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----HHHHHHHH
Confidence            45567889999999999999999999999876  4778899999999999999999888777777775    44444443


Q ss_pred             hc-cCCChhHHH--HHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028         82 MT-TSSNNWMLI--KIIKLFGALTPLEPRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        82 L~-~v~~pWlqi--kiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~  123 (136)
                      +. ++.|+=..|  +.+|+++-.+...|.. .++.|....+|.+.
T Consensus       897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf-~~i~~~cakmlrRv  940 (1692)
T KOG1020|consen  897 IIERILDTGVSVRKRVIKILRDICEETPDF-SKIVDMCAKMLRRV  940 (1692)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHh
Confidence            32 334444433  4566666665443332 24555555555443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=93.87  E-value=0.8  Score=46.19  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=96.1

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc--h---
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN--Y---   71 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~--~---   71 (136)
                      -+.+||.|+++.+||.|+-++..++.-.++..+     +.++.+..+|.+.+..+--.+...+..+..... ++  +   
T Consensus       613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~  692 (2102)
T PLN03200        613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA  692 (2102)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            356789999999999999999999988887543     368899999999999999988888888876332 22  1   


Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-hH---HHhhhHHHHHHHHhccch
Q psy11028         72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PR---LGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e-~~---~~~~l~e~l~~iL~~~~s  125 (136)
                      ...+|+|+++|+. +++=+.-..+..|+.+..+. .+   .....++.+.++|+..+.
T Consensus       693 ~GaV~pL~~LL~~-~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~  749 (2102)
T PLN03200        693 EDAIKPLIKLAKS-SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL  749 (2102)
T ss_pred             cCCHHHHHHHHhC-CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh
Confidence            2369999999976 78888899999999887543 22   235668889999987665

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=93.23  E-value=0.54  Score=35.53  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch----hhhHHHHHHHhc
Q psy11028         13 PYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAPVFFKLMT   83 (136)
Q Consensus        13 ~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~----~~lvp~lv~iL~   83 (136)
                      --+||-|.-|+|-++...++.+.  .|.+++...|.| ++.+-.-+...+.-++..+|...    ..++.++-..|+
T Consensus        41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~  116 (169)
T PF08623_consen   41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS  116 (169)
T ss_dssp             GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence            35899999999999999888776  489999999999 99999999999999999999743    356777777665

; PDB: 4A0C_A 1U6G_C.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=93.02  E-value=1.3  Score=44.74  Aligned_cols=121  Identities=11%  Similarity=0.009  Sum_probs=87.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      ...||+..+.-++..|+.|+.-+....++..+     ..++.+.++|...+..+...++..+--++..+++.-     -.
T Consensus       409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG  488 (2102)
T PLN03200        409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG  488 (2102)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            34567778899999999999988887776544     268999999999999999999988888887766532     25


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccch
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIIS  125 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s  125 (136)
                      .+|.|+++|.. +++=.|-.-.-.+..++..++....     ..++.+.++|++.+.
T Consensus       489 aIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~  544 (2102)
T PLN03200        489 GIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP  544 (2102)
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence            69999999974 5666666666666666654432222     234566666665543

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.55  E-value=2.2  Score=30.42  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc--CCChh
Q psy11028         18 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT--SSNNW   89 (136)
Q Consensus        18 KA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~--v~~pW   89 (136)
                      .+++.+-=+++..++...+....|++.|..+||-|..-|+.++-.+.++-...|.      ++...+++++.+  ..++=
T Consensus        19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~   98 (133)
T cd03561          19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK   98 (133)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence            3445555556666666677889999999999999999999999998888777663      344557777765  46777


Q ss_pred             HHHHHHHHhhhcC
Q psy11028         90 MLIKIIKLFGALT  102 (136)
Q Consensus        90 lqikiLk~L~~l~  102 (136)
                      .+-|++.+++..+
T Consensus        99 Vk~kil~ll~~W~  111 (133)
T cd03561          99 VREKALELILAWS  111 (133)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0166|consensus

Probab=92.50  E-value=0.83  Score=40.15  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             hhhhcCCCCh-HHHHHHHHHHHHHHhHC-C----CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028          4 YFIYLTSTKP-YLRKKAVLMMYKVFLKF-P----DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----   72 (136)
Q Consensus         4 V~klL~~s~~-~VRKKA~l~~~rl~~~~-P----~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----   72 (136)
                      ...+++.+++ ...+.|.-++..+++.- |    +.+....+.+..+|.+.|+-|+.-|.-.+.+++...++...     
T Consensus       199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~  278 (514)
T KOG0166|consen  199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA  278 (514)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence            3455555555 68889999999999875 5    34456789999999999999999999999999987665432     


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhcc
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRI  123 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~  123 (136)
                      ..+|.++.+|.. +.+=.++-.||.++....++...     .....+.+..++.++
T Consensus       279 gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s  333 (514)
T KOG0166|consen  279 GVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS  333 (514)
T ss_pred             cchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence            469999999987 56666677888888877665432     334556677777643

>KOG0213|consensus

Probab=92.45  E-value=1.1  Score=41.49  Aligned_cols=99  Identities=12%  Similarity=0.132  Sum_probs=74.1

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHH----HHhhcCCCChhHHHHHHHHHHHHHhcC-----Ccchh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPR----LKEKLEDPDSGVQSAAVNVVCELARKN-----PKNYL   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~----l~~lL~D~d~~V~~aal~l~~~l~~~~-----p~~~~   72 (136)
                      ++...|++..|.||+.|+-.+.++-..--.+-+. ...+    +-+-|.+.+|-|+.+.+..++.|....     -.+.+
T Consensus       803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~  882 (1172)
T KOG0213|consen  803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK  882 (1172)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence            5778999999999999998888776554444332 2333    555667899999999999999998754     23567


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      .+.|.+.-||++ ...=.|...+++++..+
T Consensus       883 dllPrltPILkn-rheKVqen~IdLvg~Ia  911 (1172)
T KOG0213|consen  883 DLLPRLTPILKN-RHEKVQENCIDLVGTIA  911 (1172)
T ss_pred             hhcccchHhhhh-hHHHHHHHHHHHHHHHH
Confidence            899999999997 45556666666666665

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.45  E-value=3.1  Score=30.35  Aligned_cols=74  Identities=14%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         29 KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        29 ~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      ..++...+.+..|++.|.++|+-|..-|+.++..++++-...|.      .|...+++++..-.++=.+-|+|.+++..+
T Consensus        30 ~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          30 SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            34444456778899999999999999999999999888776553      567788888887678899999999998775

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=92.08  E-value=0.63  Score=34.51  Aligned_cols=70  Identities=17%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL   74 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l   74 (136)
                      +.+...+.++++|+-|+.++.+.+.+ .+-.+.+.+.+...+.|.+.-|--|.-..+.++.+++|+.-..+
T Consensus       110 ~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~  179 (197)
T cd06561         110 LEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF  179 (197)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            45667899999999999999999988 22355578888999999999999999999999999998754443

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2171|consensus

Probab=92.07  E-value=2.1  Score=40.69  Aligned_cols=122  Identities=17%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             CCCChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhc-----CCCChhHHHHHHHHHHHHHhcC-CcchhhhHHHHHHH
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKL-----EDPDSGVQSAAVNVVCELARKN-PKNYLSLAPVFFKL   81 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL-----~D~d~~V~~aal~l~~~l~~~~-p~~~~~lvp~lv~i   81 (136)
                      ++.+|-+|+-|+.-+.|++-+ .+.+-.+....+++.|     .++.++|=.+..-++-++++.. |+.|.++.+-+++-
T Consensus        47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~  126 (1075)
T KOG2171|consen   47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQS  126 (1075)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            468999999999999988855 4444444444444433     6789999999999999999976 66899999999999


Q ss_pred             hccCCChhHHHHHHHHhhhcCC----CChHHHhhhHHHHHHHHhccchhhhhhh
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTP----LEPRLGKKLIEPLTNLIHRIISLSCWTG  131 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~----~e~~~~~~l~e~l~~iL~~~~s~sv~~~  131 (136)
                      .++ ++|=++=--+.+|..++.    .+..--..+...+.+-++..++.+-.++
T Consensus       127 ~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a  179 (1075)
T KOG2171|consen  127 TKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAA  179 (1075)
T ss_pred             hcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHH
Confidence            987 566666666677776653    2222233566666666666666643443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=92.06  E-value=2.4  Score=32.44  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhH-CCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028         17 KKAVLMMYKVFLK-FPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus        17 KKA~l~~~rl~~~-~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      ==|...+.-+.+. .++.+-+    .+..+++.|+.+|+.|+.+++.++..++...+..=..++|.+-++|
T Consensus        56 flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL  126 (183)
T PF10274_consen   56 FLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL  126 (183)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            3466666777777 6665443    5677899999999999999999999998877654344555544443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.55  E-value=1.6  Score=32.29  Aligned_cols=71  Identities=18%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHC-CCCc-h---hhHHHHHhhcCC-CChhHHHHHHHHHHHHHh---cCCcchhh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL-R---PAFPRLKEKLED-PDSGVQSAAVNVVCELAR---KNPKNYLS   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v-~---~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~---~~p~~~~~   73 (136)
                      -+.++|++++++-|=.++.-+.-.++.+ +|.+ +   .|+..+.+.|.. .++.+..+++..+..+..   ..|+.-++
T Consensus        29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re  108 (165)
T PF08167_consen   29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE  108 (165)
T ss_pred             HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3678899999999988888878888887 7877 3   377888888876 456667777777766644   55665443

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=91.47  E-value=0.15  Score=38.39  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL   74 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l   74 (136)
                      +.+.+++.++++|+-|+.++.+.+++  +-.+.+.+.+...+.|++.-|-.|.--++.++++.+|+.-..+
T Consensus       125 ~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~  193 (213)
T PF08713_consen  125 LEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF  193 (213)
T ss_dssp             HHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            44566899999999999999998888  4445677888889999999999999999999999999754433

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG2171|consensus

Probab=91.15  E-value=1.7  Score=41.24  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=88.4

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-hhH----HHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCc-chhhh
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAF----PRLKEKLEDP-DSGVQSAAVNVVCELARKNPK-NYLSL   74 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~----~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~-~~~~l   74 (136)
                      .-|...|++++|-||--|+.|+-.+-.-.+.-++ ...    +-+...++|. ++.|-..|.+.+....+..+. ...+.
T Consensus       392 ~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY  471 (1075)
T KOG2171|consen  392 PIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY  471 (1075)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            4688899999999999999999988765444443 233    3455555654 779999999999999888874 33333


Q ss_pred             HHH----HHHHhccCCChhHHHHHHHHhhhcCCC--C--hHHHhhhHHHHHHHHhccch
Q psy11028         75 APV----FFKLMTTSSNNWMLIKIIKLFGALTPL--E--PRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        75 vp~----lv~iL~~v~~pWlqikiLk~L~~l~~~--e--~~~~~~l~e~l~~iL~~~~s  125 (136)
                      .|.    ....|.+.+.|-.|-..+-.++.-+..  +  ..-.+.+.+.+.++|++++.
T Consensus       472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~  530 (1075)
T KOG2171|consen  472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD  530 (1075)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc
Confidence            333    455666778999999999888876532  1  13356677778888888874

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.02  E-value=1.5  Score=32.55  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=57.2

Q ss_pred             hhc-CCCChHHHHHHHHHHHHHHh---HCCCCchh--------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028          6 IYL-TSTKPYLRKKAVLMMYKVFL---KFPDALRP--------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus         6 klL-~~s~~~VRKKA~l~~~rl~~---~~P~~v~~--------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      +.| ++..+.+++-|+.++.+++.   .+|++...        +++.+.+++++  ..+...++.++..+...+|..|++
T Consensus        74 ~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp  151 (165)
T PF08167_consen   74 SILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP  151 (165)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence            344 35778889999999999995   47776643        34445555554  788889999999999999999999


Q ss_pred             hHHHHHHHh
Q psy11028         74 LAPVFFKLM   82 (136)
Q Consensus        74 lvp~lv~iL   82 (136)
                      +..++-..+
T Consensus       152 ~~~ki~~~l  160 (165)
T PF08167_consen  152 FANKIESAL  160 (165)
T ss_pred             hHHHHHHHH
Confidence            888776654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.89  E-value=1.9  Score=39.24  Aligned_cols=82  Identities=15%  Similarity=0.202  Sum_probs=59.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hH----HHHHhhcCCCChhHHHHHHHHHHHHHhcCC-c----chh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AF----PRLKEKLEDPDSGVQSAAVNVVCELARKNP-K----NYL   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~----~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~----~~~   72 (136)
                      ++.++|+|..|.||..|+-.+..+...--.+-+. ..    ..+-+-|.+.+|-|+.+.+..++.|..... +    +..
T Consensus       608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~  687 (975)
T COG5181         608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS  687 (975)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence            5789999999999999987766555443333321 22    335555677899999999999999966331 2    456


Q ss_pred             hhHHHHHHHhcc
Q psy11028         73 SLAPVFFKLMTT   84 (136)
Q Consensus        73 ~lvp~lv~iL~~   84 (136)
                      .+.|.+.-||++
T Consensus       688 ~ilP~ltPILrn  699 (975)
T COG5181         688 GILPSLTPILRN  699 (975)
T ss_pred             hccccccHhhhh
Confidence            789999999985

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.69  E-value=1.7  Score=35.13  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--cch--h
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNY--L   72 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p--~~~--~   72 (136)
                      .+++++++.++.-+|+..+.++....+..-..        +++.+.+.+...+.++...++.++.++.+..+  ..|  .
T Consensus       111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            45788999999999999999999988865443        44555555555677888999999999986443  233  3


Q ss_pred             hhHHHHHHHh------ccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccc
Q psy11028         73 SLAPVFFKLM------TTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRII  124 (136)
Q Consensus        73 ~lvp~lv~iL------~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~  124 (136)
                      ..++.+.++|      .+..++=+|=..+-++=.|.-.+.-    ..+.++..+.++++.+.
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~  252 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI  252 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc
Confidence            5688899999      3444555555555555444433211    11224555555555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=90.10  E-value=4.1  Score=37.51  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh-HHHHHHHh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL-APVFFKLM   82 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l-vp~lv~iL   82 (136)
                      +++=++|+||++|=-|.-.+-.+  ..+++++.+++-+++.+.|+++-|=-+|.-.+..+-+.+++.|.+. .-.+.+-|
T Consensus        97 i~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l  174 (757)
T COG5096          97 IQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL  174 (757)
T ss_pred             HHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence            55667899999997776555432  4568888899999999999999999999989999999999887765 33333333


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR  122 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~  122 (136)
                      -.-++|=....-+..|..+-+.   .++.....+...+.+
T Consensus       175 ~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~  211 (757)
T COG5096         175 VADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQ  211 (757)
T ss_pred             hhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence            3346777777777666666554   234444444444444

>KOG0166|consensus

Probab=89.72  E-value=4.6  Score=35.60  Aligned_cols=128  Identities=19%  Similarity=0.228  Sum_probs=95.0

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCCh-hHHHHHHHHHHHHHh-cCCcc----hhh
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDS-GVQSAAVNVVCELAR-KNPKN----YLS   73 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~-~V~~aal~l~~~l~~-~~p~~----~~~   73 (136)
                      .+|+.++++.||-.|+-|+-.+--..|++=.     ...+.+..++...+. +.+-.++-++.-+|+ ++|.+    -..
T Consensus       158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~  237 (514)
T KOG0166|consen  158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP  237 (514)
T ss_pred             HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence            5788999999999999999998888876432     256778888877766 677777777788887 45653    345


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhhhhcc
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCWTGIK  133 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~~~~k  133 (136)
                      ..|.+...|.. .|+=.+.-..-.+++|..+.+...+     .....+.++|.+.+-.++.-|++
T Consensus       238 iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR  301 (514)
T KOG0166|consen  238 ILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR  301 (514)
T ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence            67777777776 6888888888889988855443333     45567888888888766655554

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.64  E-value=5.6  Score=28.39  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             HHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccC-CChhHHHHH
Q psy11028         22 MMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTS-SNNWMLIKI   94 (136)
Q Consensus        22 ~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v-~~pWlqiki   94 (136)
                      -+-=+++..++...+....+++.|.++||-|..-|+.++-.+.++-...|      ++|...+++++++- +.|..+-|+
T Consensus        23 ~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~ki  102 (133)
T smart00288       23 EICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRI  102 (133)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            33334455555566788889999999999999999999999988866554      24666777777753 456789999


Q ss_pred             HHHhhhcC
Q psy11028         95 IKLFGALT  102 (136)
Q Consensus        95 Lk~L~~l~  102 (136)
                      +.++...+
T Consensus       103 l~li~~W~  110 (133)
T smart00288      103 LELIQEWA  110 (133)
T ss_pred             HHHHHHHH
Confidence            99988654

Unpublished observations. Domain of unknown function.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=89.34  E-value=0.74  Score=26.69  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             HHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHH
Q psy11028         22 MMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVV   60 (136)
Q Consensus        22 ~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~   60 (136)
                      |+..+..++|+++.  ...+.+.+.|.|++++|=-|++.++
T Consensus         2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            45678889999987  4789999999999999999988653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=89.20  E-value=1  Score=23.98  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=24.6

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028         38 FPRLKEKLEDPDSGVQSAAVNVVCELARK   66 (136)
Q Consensus        38 ~~~l~~lL~D~d~~V~~aal~l~~~l~~~   66 (136)
                      ++.+.++++|+++.|=.+|+..+.++++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            57889999999999999999999888763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.20  E-value=5.9  Score=28.80  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             HHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCChhHH
Q psy11028         23 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNNWML   91 (136)
Q Consensus        23 ~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~pWlq   91 (136)
                      +-=++...|+...+.+..+++.|.++|+-|..-|++++-.+.++=...|      +.|...+++++..     -+++=.+
T Consensus        25 icD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk  104 (139)
T cd03567          25 FCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVK  104 (139)
T ss_pred             HHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHH
Confidence            3334455666556678889999999999999999999999888766655      3567788888852     3578889


Q ss_pred             HHHHHHhhhcC
Q psy11028         92 IKIIKLFGALT  102 (136)
Q Consensus        92 ikiLk~L~~l~  102 (136)
                      -|+|.++..-+
T Consensus       105 ~kil~li~~W~  115 (139)
T cd03567         105 TKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHHH
Confidence            99999988665

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.17  E-value=4.6  Score=37.38  Aligned_cols=116  Identities=18%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc--
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT--   83 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~--   83 (136)
                      +.|.+.+..|||.|.|.++-++...-=-+..-.+++..+|.|+|.++---+=..++++++++-..|-.++.-+-.+=.  
T Consensus       978 rrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidifs~ls~~a 1057 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIFSTLSSDA 1057 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHHHHcCchh
Confidence            456788999999999999988888766677788999999999999999999999999999887766655543322211  


Q ss_pred             -cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028         84 -TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII  124 (136)
Q Consensus        84 -~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~  124 (136)
                       .-.-||  -+|+++|..|-..| |-.+++-|.+.--+.+.+
T Consensus      1058 e~g~e~f--k~II~FLt~fI~ke-rh~kql~E~L~~rl~rc~ 1096 (1128)
T COG5098        1058 ENGQEPF--KLIIGFLTDFISKE-RHQKQLKESLFLRLLRCN 1096 (1128)
T ss_pred             hcCCCcH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Confidence             113443  46788888777654 233456666655554444

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=89.01  E-value=8.5  Score=29.31  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhH-CCCCchhh----------------HHHHHhhcCCCChhHHHHHHHHHHHHHhcC----------
Q psy11028         15 LRKKAVLMMYKVFLK-FPDALRPA----------------FPRLKEKLEDPDSGVQSAAVNVVCELARKN----------   67 (136)
Q Consensus        15 VRKKA~l~~~rl~~~-~P~~v~~~----------------~~~l~~lL~D~d~~V~~aal~l~~~l~~~~----------   67 (136)
                      ||.-|..|+.-+.+. +|-.+-.+                ..-+.-++.|+++.|=.+|++++..+.+..          
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            788999999999888 54333322                222455678999999999999998884431          


Q ss_pred             --C-cchhhhHHHHHHHhc-----------cCCChhHHHHHHHHhhhcCCCC------hHHHhhhHHHHHHHHhccchhh
Q psy11028         68 --P-KNYLSLAPVFFKLMT-----------TSSNNWMLIKIIKLFGALTPLE------PRLGKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        68 --p-~~~~~lvp~lv~iL~-----------~v~~pWlqikiLk~L~~l~~~e------~~~~~~l~e~l~~iL~~~~s~s  127 (136)
                        + ..|-.+.-.+-.++.           .-.++=.+..+||.++.+....      +....++...+...+.+.+..+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence              2 246666555555554           3467778889999999886433      3455566666777777765544


Q ss_pred             hh
Q psy11028        128 CW  129 (136)
Q Consensus       128 v~  129 (136)
                      ..
T Consensus       162 ~v  163 (182)
T PF13251_consen  162 RV  163 (182)
T ss_pred             HH
Confidence            33

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=88.99  E-value=1.6  Score=30.42  Aligned_cols=110  Identities=14%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc---CC------c-------chhhhH
Q psy11028         13 PYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK---NP------K-------NYLSLA   75 (136)
Q Consensus        13 ~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~---~p------~-------~~~~lv   75 (136)
                      ++||.|.+.++..+.++ +|+.-+++++.+.+.+.. ++.-.-.++.++..+.++   .+      +       ......
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~   80 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence            68999999999999977 499999999999998876 465555566555554331   11      0       122335


Q ss_pred             HHHHHHhcc----CC---ChhHHHHHHHHhhhcCC-CChH--HHhhhHHHHHHHHhcc
Q psy11028         76 PVFFKLMTT----SS---NNWMLIKIIKLFGALTP-LEPR--LGKKLIEPLTNLIHRI  123 (136)
Q Consensus        76 p~lv~iL~~----v~---~pWlqikiLk~L~~l~~-~e~~--~~~~l~e~l~~iL~~~  123 (136)
                      |.++.++.+    ..   ++=+....|+.++.+.. .+..  ....+.+.+.++|+..
T Consensus        81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~  138 (148)
T PF08389_consen   81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP  138 (148)
T ss_dssp             HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence            555554442    12   27788888888887664 2222  2234777777777443

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=88.77  E-value=4.6  Score=30.30  Aligned_cols=103  Identities=16%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHhHCC---CCch-hhHHHHHhhcCC--CChhHHHHHHHHHHHHHhcCCcchhh-----hHHHHHHHh
Q psy11028         14 YLRKKAVLMMYKVFLKFP---DALR-PAFPRLKEKLED--PDSGVQSAAVNVVCELARKNPKNYLS-----LAPVFFKLM   82 (136)
Q Consensus        14 ~VRKKA~l~~~rl~~~~P---~~v~-~~~~~l~~lL~D--~d~~V~~aal~l~~~l~~~~p~~~~~-----lvp~lv~iL   82 (136)
                      .+-.-|.-|+.-+.++.=   |.+. .|+.++..-.+-  .|.+|+-.+++.+..++..+|..|..     -.+.++..|
T Consensus        32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL  111 (160)
T PF11841_consen   32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL  111 (160)
T ss_pred             HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence            444556667777776531   3344 378888888764  37999999999999999999887753     388899999


Q ss_pred             ccCCChhHHHHHHHHhhhcC-CCChHHHhhhHHHHH
Q psy11028         83 TTSSNNWMLIKIIKLFGALT-PLEPRLGKKLIEPLT  117 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~-~~e~~~~~~l~e~l~  117 (136)
                      .+ +++=+|.+-+-++-.|- .-++..++.+.+.+.
T Consensus       112 q~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~  146 (160)
T PF11841_consen  112 QV-SNQEIQTNAIALINALFLKADDSKRKEIAETLS  146 (160)
T ss_pred             Hc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            88 89999999998887653 333333444544443

>KOG1824|consensus

Probab=88.74  E-value=3.3  Score=39.23  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             cCCCChHHHHHHHHHHHHHHhHCCCCch-hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc--
Q psy11028          8 LTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT--   83 (136)
Q Consensus         8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~--   83 (136)
                      |.+++..|||||+.|+-++--..|.-+- ..++.+.+-|..+ .++-+-..+.++-++++....-|....+..+-.+.  
T Consensus       183 l~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y  262 (1233)
T KOG1824|consen  183 LQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY  262 (1233)
T ss_pred             ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH
Confidence            4678999999999999999988776544 5778888888665 55666666777788888766555544443333332  


Q ss_pred             ----cCCChhHHHHHHHHhhhcCCCChH
Q psy11028         84 ----TSSNNWMLIKIIKLFGALTPLEPR  107 (136)
Q Consensus        84 ----~v~~pWlqikiLk~L~~l~~~e~~  107 (136)
                          +..+.=+--+.|+.|..|-...|+
T Consensus       263 ~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  263 CNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             hcccccCcHHHHHHHHHHHHHHHHhChh
Confidence                224455566667766666443333

>KOG2259|consensus

Probab=88.72  E-value=6.9  Score=35.79  Aligned_cols=106  Identities=11%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC---CcchhhhH-----------HHHH
Q psy11028         14 YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN---PKNYLSLA-----------PVFF   79 (136)
Q Consensus        14 ~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~---p~~~~~lv-----------p~lv   79 (136)
                      -||+-|+-.++++-...|+......+.+.++++|...-|=.=++..+..|+.+-   .++...+.           -.+-
T Consensus       388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~  467 (823)
T KOG2259|consen  388 EVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALR  467 (823)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHH
Confidence            599999999999999999999999999999999999999999999998887762   22211111           1122


Q ss_pred             HHhcc--C----CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028         80 KLMTT--S----SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        80 ~iL~~--v----~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~  123 (136)
                      .+|+.  +    +=.-+..++|+-|..|+.+.+    .++.+|.+|=|+.
T Consensus       468 elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd----~i~~cm~~iGqnH  513 (823)
T KOG2259|consen  468 ELLKNARVSDLECIDMCVAHLLKNLGKYPQDRD----EILRCMGRIGQNH  513 (823)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcH----HHHHHHHHHhccC
Confidence            24442  1    234566788888888888754    6778887776554

>KOG1020|consensus

Probab=88.67  E-value=1.8  Score=42.46  Aligned_cols=87  Identities=11%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .|...+.++...||-.|+--+=|++.-+||.+..+.+.+...+.|..-+|===++-.+.++|..+|+ |...+--.+++|
T Consensus       859 ~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakml  937 (1692)
T KOG1020|consen  859 AVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKML  937 (1692)
T ss_pred             HHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHH
Confidence            3566788999999999999999999999999999999999999999999999999999999999997 555667778888


Q ss_pred             ccCCChhH
Q psy11028         83 TTSSNNWM   90 (136)
Q Consensus        83 ~~v~~pWl   90 (136)
                      +.+.|+=.
T Consensus       938 rRv~DEEg  945 (1692)
T KOG1020|consen  938 RRVNDEEG  945 (1692)
T ss_pred             HHhccchh
Confidence            88877777

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.51  E-value=7.6  Score=28.19  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             HHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHHHHHHhh
Q psy11028         26 VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIKIIKLFG   99 (136)
Q Consensus        26 l~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqikiLk~L~   99 (136)
                      ++...++...+.+..+++.|.++|+-|..-|+.++..+.++=...|      +.|...+++++.+-++|=.+-|+|.++.
T Consensus        31 ~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~  110 (142)
T cd03569          31 MIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ  110 (142)
T ss_pred             HHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            3344445455678889999999999999999999988888755433      3567788888877678888889999888


Q ss_pred             hcC
Q psy11028        100 ALT  102 (136)
Q Consensus       100 ~l~  102 (136)
                      .-+
T Consensus       111 ~W~  113 (142)
T cd03569         111 AWA  113 (142)
T ss_pred             HHH
Confidence            654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1078|consensus

Probab=88.46  E-value=1.6  Score=40.15  Aligned_cols=117  Identities=12%  Similarity=0.162  Sum_probs=83.3

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChh
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW   89 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pW   89 (136)
                      ++++.++--|....++++....+.+..|...+.....+.|..|..=+++++..+-+++.-.--+++..+.+  ++..+|+
T Consensus       146 d~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~--~~~~~~~  223 (865)
T KOG1078|consen  146 DKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTR--GSLKSPL  223 (865)
T ss_pred             ccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc--ccccchh
Confidence            57777888888888888888888888888888888888888888888888888877776555555555555  4567777


Q ss_pred             HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028         90 MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        90 lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      -.+-+.|+-..+-..++...-.+.+.+...+.+-.=++.
T Consensus       224 A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~  262 (865)
T KOG1078|consen  224 AVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVI  262 (865)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHH
Confidence            777777777777666554444566666666654443333

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=87.64  E-value=11  Score=30.10  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=74.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+.+.+.+.++.+|..|+..+-.      --.+..++.+.+.+.|.++.|-.+++.   .+....   ....+|.++..|
T Consensus        47 ~~~~~l~~~~~~vr~~aa~~l~~------~~~~~av~~l~~~l~d~~~~vr~~a~~---aLg~~~---~~~a~~~li~~l  114 (335)
T COG1413          47 ELLKLLEDEDLLVRLSAAVALGE------LGSEEAVPLLRELLSDEDPRVRDAAAD---ALGELG---DPEAVPPLVELL  114 (335)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhh------hchHHHHHHHHHHhcCCCHHHHHHHHH---HHHccC---ChhHHHHHHHHH
Confidence            45677778889999988877210      011236788999999999999888887   333332   225788888888


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII  124 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~  124 (136)
                      .+-++.+..-...+.|+.++...      -.+.+.+.++...
T Consensus       115 ~~d~~~~vR~~aa~aL~~~~~~~------a~~~l~~~l~~~~  150 (335)
T COG1413         115 ENDENEGVRAAAARALGKLGDER------ALDPLLEALQDED  150 (335)
T ss_pred             HcCCcHhHHHHHHHHHHhcCchh------hhHHHHHHhccch
Confidence            87789999999999888887663      2555666666554

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.46  E-value=5.8  Score=28.42  Aligned_cols=84  Identities=18%  Similarity=0.286  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc-CCChh--
Q psy11028         19 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-SSNNW--   89 (136)
Q Consensus        19 A~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~-v~~pW--   89 (136)
                      +++-+-=.++..++...+.+..|++.|...+|.|..-|+.++-.+.++-...|.      .|...+++++++ ...|+  
T Consensus        25 ~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~  104 (140)
T PF00790_consen   25 LILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETP  104 (140)
T ss_dssp             HHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSH
T ss_pred             HHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhH
Confidence            344444455556666667888899999999999999999999999887755443      367777777764 45566  


Q ss_pred             HHHHHHHHhhhcC
Q psy11028         90 MLIKIIKLFGALT  102 (136)
Q Consensus        90 lqikiLk~L~~l~  102 (136)
                      .+-|++.++...+
T Consensus       105 Vk~k~l~ll~~W~  117 (140)
T PF00790_consen  105 VKEKILELLQEWA  117 (140)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999888654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.82  E-value=11  Score=28.27  Aligned_cols=120  Identities=16%  Similarity=0.154  Sum_probs=80.0

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh----H
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL----A   75 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l----v   75 (136)
                      .+|.++.-++++.+|..|+-.+.-+.+.  .++.+  .++.+..+..|+|+.+-.-|..+..++.+++|+....-    +
T Consensus        11 ~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi   88 (187)
T PF12830_consen   11 KNILELCLSSDDSVRLAALQVLELILRQ--GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGI   88 (187)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678888999999999999988887775  56664  67999999999999999999999999999998754322    2


Q ss_pred             HHHHHHhcc-CCChhH-----HHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028         76 PVFFKLMTT-SSNNWM-----LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        76 p~lv~iL~~-v~~pWl-----qikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~  123 (136)
                      -..+..-+. .++++.     ....+.-+-.+.....+..++++.-+...+...
T Consensus        89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~  142 (187)
T PF12830_consen   89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFD  142 (187)
T ss_pred             HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence            222221111 122222     333444333333344455666666666666554

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=86.76  E-value=1.1  Score=32.77  Aligned_cols=78  Identities=22%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      ...+|.+.++-|.|-|.-|+...  ++| .+....+.+..+++|....==.+...+-.+=....++.-..++|-+++||-
T Consensus        22 ~~~LL~~~d~~vQklAL~cll~~--k~~-~l~pY~d~L~~Lldd~~frdeL~~f~~~~~~~~I~~ehR~~l~pvvlRILy   98 (141)
T PF07539_consen   22 LLRLLSSRDPEVQKLALDCLLTW--KDP-YLTPYKDNLENLLDDKTFRDELTTFNLSDESSVIEEEHRPELMPVVLRILY   98 (141)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHh--CcH-HHHhHHHHHHHHcCcchHHHHHHhhcccCCcCCCCHHHHhHHHHHHHHHHH
Confidence            35788999999999999998762  233 456678999999988644433333322111111234555678999999988


Q ss_pred             c
Q psy11028         84 T   84 (136)
Q Consensus        84 ~   84 (136)
                      +
T Consensus        99 g   99 (141)
T PF07539_consen   99 G   99 (141)
T ss_pred             H
Confidence            4

It is believed to be involved in processing of non-coding RNA [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=85.93  E-value=12  Score=29.97  Aligned_cols=61  Identities=25%  Similarity=0.348  Sum_probs=44.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCC-Cch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD-ALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK   66 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~   66 (136)
                      ...-|+++++.+|.||..++..+....|. .+.     .+.+.+.+.|+  |+..+..++..+..+.+.
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~   70 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM   70 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC
Confidence            45678999999999999999999998883 232     24566777773  455555558888888754

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=85.92  E-value=15  Score=28.68  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhHCCCCchhhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCC----cchhhhHHHHHHHhccCCChhHHHH
Q psy11028         19 AVLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNP----KNYLSLAPVFFKLMTTSSNNWMLIK   93 (136)
Q Consensus        19 A~l~~~rl~~~~P~~v~~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p----~~~~~lvp~lv~iL~~v~~pWlqik   93 (136)
                      .+.+++-+++..|+...++.+.+...| .+.++.+.+.++-.+..+++.+-    +.|..+.+.+    ..-..|=++-.
T Consensus       104 ~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l----~~~~rp~v~~~  179 (234)
T PF12530_consen  104 IAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL----SLDYRPLVLKS  179 (234)
T ss_pred             HHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc----CCccchHHHHH
Confidence            357888999999997778999999999 78999999999999999996542    2233333333    44467777776


Q ss_pred             HHHHhhhcCC
Q psy11028         94 IIKLFGALTP  103 (136)
Q Consensus        94 iLk~L~~l~~  103 (136)
                      +.++++.++.
T Consensus       180 l~~l~~l~~~  189 (234)
T PF12530_consen  180 LCSLFALVPQ  189 (234)
T ss_pred             HHHHHHHhcc
Confidence            7777777653

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=85.73  E-value=5.7  Score=30.40  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             hHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHhc---cCCChhHHHHHHHHhhhc
Q psy11028         28 LKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNYLSLAPVFFKLMT---TSSNNWMLIKIIKLFGAL  101 (136)
Q Consensus        28 ~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~~~lvp~lv~iL~---~v~~pWlqikiLk~L~~l  101 (136)
                      +.+||.++  .+.+.+.+.|.+.++---.-|..-+.++.+. .++...+++|.++.=|+   +..+|=.....|++|+.|
T Consensus        28 ~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L  107 (183)
T PF10274_consen   28 KVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL  107 (183)
T ss_pred             ecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            34566655  4778888888887666666667778888888 77788888888888777   368999999999999999


Q ss_pred             CCCChHHHhhhHHHHHHHH
Q psy11028        102 TPLEPRLGKKLIEPLTNLI  120 (136)
Q Consensus       102 ~~~e~~~~~~l~e~l~~iL  120 (136)
                      ....+...+.+.+-+.++|
T Consensus       108 v~~~~~vG~aLvPyyrqLL  126 (183)
T PF10274_consen  108 VTSSDMVGEALVPYYRQLL  126 (183)
T ss_pred             HHhhhhhhHHHHHHHHHHH
Confidence            4444444444554444444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2023|consensus

Probab=85.25  E-value=2.3  Score=38.87  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      ..+..+|++|-+|+-|+-|+-.++-..++.+..    |.+.+-.+=+|.||-|=-.....+..+.+..|+...+..+.++
T Consensus       179 fl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Iv  258 (885)
T KOG2023|consen  179 FLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIV  258 (885)
T ss_pred             HHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHH
Confidence            456678999999999999999988888776653    6677777779999999999999999999999986666666665


Q ss_pred             H
Q psy11028         80 K   80 (136)
Q Consensus        80 ~   80 (136)
                      .
T Consensus       259 e  259 (885)
T KOG2023|consen  259 E  259 (885)
T ss_pred             H
Confidence            5

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=85.02  E-value=4.4  Score=34.12  Aligned_cols=74  Identities=11%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      ..++..+|-.-..|+..+.+..|..+-     ...|-+.+.|+-.|..|..+++..+..+..++|+.+.+.+..++..|
T Consensus       333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L  411 (415)
T PF12460_consen  333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL  411 (415)
T ss_pred             hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            344444666677888899999996432     25677788888889999999999999999999988877777777654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2023|consensus

Probab=84.99  E-value=4.4  Score=37.14  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKN   67 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~   67 (136)
                      .+=++.+|.|||--|.++..+.+..||.+.+    .++++.+.-.|.|.+|..-|.-....+++..
T Consensus       222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp  287 (885)
T KOG2023|consen  222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP  287 (885)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence            3447899999999999999999999997653    6799999999999999999988888887754

>KOG0414|consensus

Probab=84.47  E-value=2  Score=41.12  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT   84 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~   84 (136)
                      .+++|-++..|-+|+.|+.-.+.+..+.-.+-+-..++ .++|-|=++++..+.+++-..|..+....+.+++.|..
T Consensus       933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen  933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred             cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence            45889999999999999999988877777777777776 67888888888888999999998888888888888875

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=84.25  E-value=5.3  Score=29.32  Aligned_cols=115  Identities=12%  Similarity=0.147  Sum_probs=80.3

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc----h--hhhHHHHHHHh
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN----Y--LSLAPVFFKLM   82 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~----~--~~lvp~lv~iL   82 (136)
                      ...+.+|-.|.+|+.|+++..++-..+ +.+.+..++.+.+..-...+++++..+-.--|+.    |  ..+.+.+....
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~   95 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA   95 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence            578889999999999998777776655 5577777887666556666666666665555542    2  23555666655


Q ss_pred             c-cCCChhHHHHHHHHhhhcCCCChH---HHhhhHHHHHHHHhccc
Q psy11028         83 T-TSSNNWMLIKIIKLFGALTPLEPR---LGKKLIEPLTNLIHRII  124 (136)
Q Consensus        83 ~-~v~~pWlqikiLk~L~~l~~~e~~---~~~~l~e~l~~iL~~~~  124 (136)
                      . ...++=.|..++++|..=+.++..   ..++..+.+.+..++..
T Consensus        96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~  141 (157)
T PF11701_consen   96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK  141 (157)
T ss_dssp             H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred             hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Confidence            5 468999999999999877766542   36677777877775544

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1240|consensus

Probab=84.15  E-value=8.5  Score=37.37  Aligned_cols=129  Identities=14%  Similarity=0.212  Sum_probs=82.3

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHC----------------------------------------CCCchh-hHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF----------------------------------------PDALRP-AFPRL   41 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~----------------------------------------P~~v~~-~~~~l   41 (136)
                      -|..||.++.|+||+.=.-.+..+|-+.                                        +..+++ ..|-+
T Consensus       582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl  661 (1431)
T KOG1240|consen  582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL  661 (1431)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence            3677889999999987655554444322                                        122233 35778


Q ss_pred             HhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc------CCChhHHHHHHHHhhhcCC--CChHHHhhhH
Q psy11028         42 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT------SSNNWMLIKIIKLFGALTP--LEPRLGKKLI  113 (136)
Q Consensus        42 ~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~------v~~pWlqikiLk~L~~l~~--~e~~~~~~l~  113 (136)
                      .+.|.|...-|+.+|+..+..+++..=  ++  -|.++.|+..      .|+-|.-=-.+-++.....  .+.....++.
T Consensus       662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~--K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~  737 (1431)
T KOG1240|consen  662 QQGLTDGEEAVIVSALGSLSILIKLGL--LR--KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLM  737 (1431)
T ss_pred             HHhccCcchhhHHHHHHHHHHHHHhcc--cc--hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEee
Confidence            889999999999999999999888541  11  1234444443      3899988877777664432  2233445666


Q ss_pred             HHHHHHH-----hccchhhhhhhcccC
Q psy11028        114 EPLTNLI-----HRIISLSCWTGIKPM  135 (136)
Q Consensus       114 e~l~~iL-----~~~~s~sv~~~~k~~  135 (136)
                      +.+.+.+     +-....+++.-+||+
T Consensus       738 P~irpfl~~~v~~i~s~~~LlsclkpP  764 (1431)
T KOG1240|consen  738 PLIRPFLERPVIQIESKEVLLSCLKPP  764 (1431)
T ss_pred             hhhHHhhhccHhhhcchHHHHHHhcCC
Confidence            6665544     445556677777765

>KOG2956|consensus

Probab=84.06  E-value=10  Score=33.23  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             hhhhhcCC-CChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHH-HHHHhcCCcchhh
Q psy11028          3 GYFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVV-CELARKNPKNYLS   73 (136)
Q Consensus         3 ~V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~-~~l~~~~p~~~~~   73 (136)
                      .+...|++ .++.+||=|.-.+-++++.-|..+.+    .+.++.+.=+|.+.+|+..|.--+ .-++.+.|..+..
T Consensus       333 ~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~  409 (516)
T KOG2956|consen  333 LLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV  409 (516)
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH
Confidence            45566777 66666677777778899999987765    466777777899999999887554 4556788876543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=83.21  E-value=10  Score=25.55  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH----HhccCCChhHHHHHHHHhhhcCCCChH
Q psy11028         38 FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK----LMTTSSNNWMLIKIIKLFGALTPLEPR  107 (136)
Q Consensus        38 ~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~----iL~~v~~pWlqikiLk~L~~l~~~e~~  107 (136)
                      .+...+.|.|+.+-|=+-|+..+..+.++.. .....++.+..    .|+. +++|.=...++.|..|+...|+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence            4556677789999999999999999988765 11223444444    4444 8999999999999999977664

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=83.12  E-value=8.1  Score=26.28  Aligned_cols=64  Identities=17%  Similarity=0.274  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028         16 RKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus        16 RKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      ||-+.+|+..+-.--++.++    .+++.+.+.+.|+|..|=-+|.-.+..+++.-.+......+.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF   70 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIF   70 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777665555454    35677888899999999999999999999876654433333333

>KOG3723|consensus

Probab=83.09  E-value=15  Score=33.37  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=62.7

Q ss_pred             HHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028         24 YKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP  103 (136)
Q Consensus        24 ~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~  103 (136)
                      .-.|.+-||.+.++.+.+.-+|...+|.--.+.--+..-|.++.|+...+++|.+..-++...-.=....|++.++.++|
T Consensus       187 S~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~p  266 (851)
T KOG3723|consen  187 SAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEP  266 (851)
T ss_pred             HHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCc
Confidence            34678899999999999999998888776555544555556678899999999999988865444455667777777776


Q ss_pred             CC
Q psy11028        104 LE  105 (136)
Q Consensus       104 ~e  105 (136)
                      ..
T Consensus       267 v~  268 (851)
T KOG3723|consen  267 VA  268 (851)
T ss_pred             cc
Confidence            54

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.46  E-value=4.5  Score=37.44  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=55.0

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCch---hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP   68 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p   68 (136)
                      ...|++++||+|-||.-.+.++|+...-.+.   .+++-+.+.|.|+.--|=-.|+.++..+.-++|
T Consensus       352 ~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         352 VERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            4556899999999999999999987655544   478888899999999999999999999988877

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=82.38  E-value=3.4  Score=23.07  Aligned_cols=28  Identities=36%  Similarity=0.478  Sum_probs=24.5

Q ss_pred             hHHHHHhhcCCCChhHHHHHHHHHHHHH
Q psy11028         37 AFPRLKEKLEDPDSGVQSAAVNVVCELA   64 (136)
Q Consensus        37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~   64 (136)
                      .++.+.++|.+.|+.|.-.++..+..++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            6788999999999999999998888775

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=82.36  E-value=5.4  Score=36.48  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCC----Cch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc----chhhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD----ALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSL   74 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~----~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~----~~~~l   74 (136)
                      +.+++.+.+.-+++.|.-.++-+- .+++    .+. ++++++..+|.|.+...  .++.++..++..+..    .+.++
T Consensus       336 L~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~~~~--val~iLy~LS~dd~~r~~f~~Tdc  412 (708)
T PF05804_consen  336 LLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPNFRE--VALKILYNLSMDDEARSMFAYTDC  412 (708)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCchHH--HHHHHHHHhccCHhhHHHHhhcch
Confidence            567888888888888877766543 3333    333 36899999998876543  367778888775432    34578


Q ss_pred             HHHHHHHhccCCChhHHHHHHHHhhhcCCC
Q psy11028         75 APVFFKLMTTSSNNWMLIKIIKLFGALTPL  104 (136)
Q Consensus        75 vp~lv~iL~~v~~pWlqikiLk~L~~l~~~  104 (136)
                      +|.++++|...+++=.+..++-++..++.+
T Consensus       413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  413 IPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            999999887666666666666666666554

>KOG1991|consensus

Probab=82.15  E-value=11  Score=35.57  Aligned_cols=120  Identities=21%  Similarity=0.255  Sum_probs=81.3

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCC---cchhhhH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNP---KNYLSLA   75 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p---~~~~~lv   75 (136)
                      +|.-.+++.-.|.|-|||-.++++..   ++|.......+-..+.|. |++.-|..-|.=.+..+...++   +.++.++
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv  545 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV  545 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh
Confidence            56667789999999999999999983   345555556677777776 8888887766666677766665   4477788


Q ss_pred             HHHHH-Hhc---cCCC----hhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028         76 PVFFK-LMT---TSSN----NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR  122 (136)
Q Consensus        76 p~lv~-iL~---~v~~----pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~  122 (136)
                      |.... +|+   .+.+    .-+|--+=++=.-+.|.-+.+.+.|.+....++++
T Consensus       546 p~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~  600 (1010)
T KOG1991|consen  546 PPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT  600 (1010)
T ss_pred             hHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence            77665 333   2221    22232222333355666678888888888888886

>KOG0168|consensus

Probab=81.85  E-value=2.1  Score=39.95  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=54.0

Q ss_pred             CCCChHHHHHHHHHHHHHHhH-CCCCchh------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLK-FPDALRP------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~-~P~~v~~------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      ++-+++||.|+.-|++|+.-. +++++..      .-..+..+|..+|+-|+..|+.+..-|+++.|+-|..
T Consensus       566 SsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~  637 (1051)
T KOG0168|consen  566 SSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSP  637 (1051)
T ss_pred             ccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhh
Confidence            568999999999999998755 5666654      2456888889999999999999999999999986643

>KOG1242|consensus

Probab=81.46  E-value=2.8  Score=37.34  Aligned_cols=47  Identities=30%  Similarity=0.338  Sum_probs=39.2

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCCCchhhHHHHHhhcCCCC
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPDALRPAFPRLKEKLEDPD   49 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~~v~~~~~~l~~lL~D~d   49 (136)
                      +.+.+.|.+++|-|||.|.-|+.++...  +|| +..+++.+.+.+.|+.
T Consensus       298 P~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~  346 (569)
T KOG1242|consen  298 PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPS  346 (569)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcc
Confidence            4567788999999999999999999876  444 6668888888888876

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=81.05  E-value=1.2  Score=26.33  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=19.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYK   25 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~r   25 (136)
                      -+..+|+++++.||..|+.|+-+
T Consensus        32 ~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen   32 ALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhc
Confidence            45678899999999999998754

...

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=80.98  E-value=7.9  Score=26.48  Aligned_cols=57  Identities=7%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028         17 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus        17 KKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      .+...-+..+...+++........+.+.|.++++-|+.=|+.++..++++-.+.|..
T Consensus        18 ~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~   74 (115)
T cd00197          18 WPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ   74 (115)
T ss_pred             HHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence            344555555666677777888999999999999999999999999999988766654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG2274|consensus

Probab=80.95  E-value=13  Score=35.13  Aligned_cols=117  Identities=14%  Similarity=0.151  Sum_probs=81.0

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc----hhhhHHH
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN----YLSLAPV   77 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~----~~~lvp~   77 (136)
                      -+..+..+++|=+|+-++--.+  .+..+    +.+.+-+.++..+..--|+...+-.++..++-||+.    -.+..|.
T Consensus       498 ~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~  575 (1005)
T KOG2274|consen  498 ALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPL  575 (1005)
T ss_pred             hhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHH
Confidence            3456788999999988776666  34433    346677788888899999999999999999999963    2356787


Q ss_pred             HHHHhc-cCCChhHHHHHHHHhhhcCCCC---hHHHhhhHHHHHHHHhccc
Q psy11028         78 FFKLMT-TSSNNWMLIKIIKLFGALTPLE---PRLGKKLIEPLTNLIHRII  124 (136)
Q Consensus        78 lv~iL~-~v~~pWlqikiLk~L~~l~~~e---~~~~~~l~e~l~~iL~~~~  124 (136)
                      +..+.. ...+|..-.-...+|.-+...+   ....+++++.+..+++.++
T Consensus       576 ~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~  626 (1005)
T KOG2274|consen  576 TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNA  626 (1005)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcc
Confidence            777554 5678854443333333332110   1236789999999998887

>KOG2149|consensus

Probab=80.95  E-value=27  Score=29.86  Aligned_cols=120  Identities=21%  Similarity=0.288  Sum_probs=85.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC-Ccc---hh-h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PKN---YL-S   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~~---~~-~   73 (136)
                      |....++|-+.-|||-|..-+...+..+|+.+..    ..+.+..+..|.|..|=.+...++..+.-.. |+.   +. -
T Consensus        62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l  141 (393)
T KOG2149|consen   62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL  141 (393)
T ss_pred             HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence            5667789999999999999999999999998762    6799999999999999999999888764433 322   22 2


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcC---CCC-hHHHhhhHHHHHHHHhcc
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT---PLE-PRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~---~~e-~~~~~~l~e~l~~iL~~~  123 (136)
                      +.|.+-..+.. ..|-.|.--+++|..+.   |+. -+.+.++.+.+.+.++..
T Consensus       142 ~~~yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~  194 (393)
T KOG2149|consen  142 LMPYISSAMTH-ITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL  194 (393)
T ss_pred             HHHHHHHHHhh-ccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555 36777766666665443   332 344555777777777543

>KOG1824|consensus

Probab=80.24  E-value=4.8  Score=38.21  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=83.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF   79 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv   79 (136)
                      ....+.++.++.|-.++-++-=.+--.|+-+..    +++.+.+++.|+|.-|--.|+.++...+.+.|...+.+.|.+.
T Consensus       971 L~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLL 1050 (1233)
T KOG1824|consen  971 LKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELL 1050 (1233)
T ss_pred             HHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHH
Confidence            345678899999988888877666777777664    6788999999999999999999999999999988888777777


Q ss_pred             HHhcc---CCChhHHHHHHHHhhhcCC-----CC-hHHHhhhHHHHHHHHhccchh
Q psy11028         80 KLMTT---SSNNWMLIKIIKLFGALTP-----LE-PRLGKKLIEPLTNLIHRIISL  126 (136)
Q Consensus        80 ~iL~~---v~~pWlqikiLk~L~~l~~-----~e-~~~~~~l~e~l~~iL~~~~s~  126 (136)
                      ..|-+   +...     ++|-. -+||     +| -...+--.|+|+.+|.+.-..
T Consensus      1051 p~Ly~eTkvrke-----lIreV-eMGPFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1051 PLLYSETKVRKE-----LIREV-EMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred             HHHHHhhhhhHh-----hhhhh-cccCccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence            65542   1000     11111 2344     22 245666788888887665443

>KOG0212|consensus

Probab=80.09  E-value=35  Score=30.85  Aligned_cols=79  Identities=16%  Similarity=0.248  Sum_probs=63.0

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-chhhhHHHHH
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFF   79 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-~~~~lvp~lv   79 (136)
                      .+.+++++..-|=.|.-=++.++.+.|.-+-    +.++.+.+-|.|++--|+.-++.++.++|...-. .++++.-++.
T Consensus       342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL  421 (675)
T KOG0212|consen  342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL  421 (675)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence            3556777777777777778889999997442    3788899999999999999999999999985543 6777777777


Q ss_pred             HHhc
Q psy11028         80 KLMT   83 (136)
Q Consensus        80 ~iL~   83 (136)
                      .+.+
T Consensus       422 ~~f~  425 (675)
T KOG0212|consen  422 EMFK  425 (675)
T ss_pred             HHHh
Confidence            7666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	4e-29
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	2e-24
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	4e-04
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	6e-24
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-22
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-08
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	3e-17

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score =  109 bits (274), Expect = 4e-29
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           L ++  YLRKKA L    V  K P+ +    P  K  L + + GV   +V ++ E+  ++
Sbjct: 151 LKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210

Query: 68  P---KNYLSLAPVFFKLM--------------TTSSNNWMLIKIIKLFGALTPLEPRLGK 110
           P    ++  L P   +++              +  S+ ++ ++I++L   L   +    +
Sbjct: 211 PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE 270

Query: 111 KLIEPLTNLIHRIISLS 127
            + + L  +     +  
Sbjct: 271 AMNDILAQVATNTETSK 287

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 96.0 bits (239), Expect = 2e-24
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
           L    PY+RK A + + K+       +        L++ + D +  V + AV  + E++ 
Sbjct: 130 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189

Query: 66  KNPKNY-LSLAPVFFKLMTTS---SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
            +P +  L L P     + T+      W  I I+       P + R  + + E +T  + 
Sbjct: 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 249

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/93 (18%), Positives = 36/93 (38%)

Query: 7   YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
           Y T       +KAV  + +  +K   +       L + ++   + V   A+ V+ ++ RK
Sbjct: 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420

Query: 67  NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFG 99
            P  Y S+     + + +         +I + G
Sbjct: 421 YPNKYESIIATLCENLDSLDEPDARAAMIWIVG 453

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621

 Score = 95.0 bits (236), Expect = 6e-24
 Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 19/133 (14%)

Query: 10  STKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
            T   +++ A L + +++   PD +       R+   L D   GV +AA +++  LA+KN
Sbjct: 159 DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218

Query: 68  PKNYLSLAP----VFFKLMTTSSNN------------WMLIKIIKLFGALTPLE-PRLGK 110
           P+ + +          +++T++S +            W+ +K+++L     P E P +  
Sbjct: 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG 278

Query: 111 KLIEPLTNLIHRI 123
           +L E L  ++++ 
Sbjct: 279 RLTECLETILNKA 291

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 87.1 bits (215), Expect = 5e-22
 Identities = 20/85 (23%), Positives = 35/85 (41%)

Query: 37  AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 96
              +L E L+D    V   A++++  +A+     Y  +    F L+  S    +  +I K
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK 92

Query: 97  LFGALTPLEPRLGKKLIEPLTNLIH 121
            FG +   +P L K +I  L     
Sbjct: 93  AFGQMAKEKPELVKSMIPVLFANYR 117

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           L+S     +  A+  +  +       + P  PR+   L D D  V+++AV  +  LA  N
Sbjct: 153 LSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN 212

Query: 68  PK 69
            K
Sbjct: 213 DK 214

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 11/115 (9%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
           +    P +   A++    +     D ++      +E     +  VQ  A+ ++  + + +
Sbjct: 148 IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207

Query: 68  PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PRLGKKLIEPLTNLIH 121
                 +   F +      + +    +I++       E       L + + + + 
Sbjct: 208 RLAVSKMISKFTR--HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLR 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.9
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.87
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.81
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.44
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.34
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.33
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.32
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.26
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.97
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.94
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.9
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.87
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.86
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.84
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.83
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.83
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.83
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.79
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.77
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.75
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.75
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.75
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.71
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.67
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.67
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.67
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.34
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.34
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.27
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.16
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.14
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.03
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.98
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.76
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.73
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.72
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.71
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.44
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.41
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.32
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.3
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.3
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.94
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	95.85
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	95.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	95.62
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.6
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.52
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	95.45
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.36
3grl_A	651	General vesicular transport factor P115; vesicle t	95.3
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	95.21
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	94.81
3nmz_A	458	APC variant protein; protein-protein complex, arma	94.63
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	94.62
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	94.55
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.47
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	94.45
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.94
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	93.84
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	93.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.27
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	93.07
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	92.7
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	91.84
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	91.82
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.71
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.52
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.48
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	91.39
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	91.3
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.19
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.06
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.01
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.96
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.52
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	90.14
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.52
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	89.45
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	89.42
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	88.66
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	87.45
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	86.67
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.55
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	84.81
3grl_A	651	General vesicular transport factor P115; vesicle t	84.26
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	82.95
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	82.41
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	82.1

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.90  E-value=1.1e-23  Score=182.36  Aligned_cols=122  Identities=21%  Similarity=0.396  Sum_probs=112.0

Q ss_pred             Chhhhhhc--CCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHH
Q psy11028          1 MLGYFIYL--TSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP   76 (136)
Q Consensus         1 ~~~V~klL--~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp   76 (136)
                      .++|.++|  .|++|||||||++|++|+|+++||.++  +|.+++.++|+|+|+||+.+|++++++++..+|+.|..++|
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~  227 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS  227 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            36789999  999999999999999999999999999  79999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc------C----------CChhHHHHHHHHhhhcCCC-ChHHHhhhHHHHHHHHhc
Q psy11028         77 VFFKLMTT------S----------SNNWMLIKIIKLFGALTPL-EPRLGKKLIEPLTNLIHR  122 (136)
Q Consensus        77 ~lv~iL~~------v----------~~pWlqikiLk~L~~l~~~-e~~~~~~l~e~l~~iL~~  122 (136)
                      .++++|++      .          ++||+|+++|++|+.+++. +++..+++.+.+..++++
T Consensus       228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~  290 (621)
T 2vgl_A          228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNK  290 (621)
T ss_dssp             HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            99988863      2          3899999999999999985 588889999988888854

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.87  E-value=4.7e-23  Score=169.21  Aligned_cols=131  Identities=8%  Similarity=0.071  Sum_probs=103.7

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+.+.|.|.+|||||+|++|.+|+++++||.++.|.+.+.++++|+||+|+.+|+++++++.+.++..+.++++.+.+. 
T Consensus       143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~-  221 (355)
T 3tjz_B          143 YMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRH-  221 (355)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcC-
Confidence            5778999999999999999999999999999999999999999999999999999999999998876666666655431 


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCC-hHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLE-PRLGKKLIEPLTNLIHRIISLSCWTGIKPM  135 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e-~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~  135 (136)
                       ++.+||.|+.++|+++.++++| ++.+++++|.+.+.|++.+++++..++|.+
T Consensus       222 -~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          222 -GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             -CCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHH
T ss_pred             -CCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence             3679999999999999999988 889999999999999999999999998864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.86  E-value=5.6e-22  Score=170.79  Aligned_cols=132  Identities=20%  Similarity=0.358  Sum_probs=118.5

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc---chhhhHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVF   78 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~---~~~~lvp~l   78 (136)
                      .+|.++|+|++|||||+|++|++++|+.+|+.++.|++.+.++|+|+|++|+.+|+.++.+++..+|+   .|.+++|.+
T Consensus       145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l  224 (618)
T 1w63_A          145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQL  224 (618)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999998875   688999999


Q ss_pred             HHHhcc--------------CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc------chhhhhhhcc
Q psy11028         79 FKLMTT--------------SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI------ISLSCWTGIK  133 (136)
Q Consensus        79 v~iL~~--------------v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~------~s~sv~~~~k  133 (136)
                      +++|++              +++||+|++++++|+.+++.+|+..+++.+.+.++++++      +.+++..++|
T Consensus       225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~  299 (618)
T 1w63_A          225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVL  299 (618)
T ss_dssp             HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            999885              579999999999999999999999999999999988643      3345555554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.81  E-value=8.9e-20  Score=155.88  Aligned_cols=132  Identities=20%  Similarity=0.315  Sum_probs=116.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc-hhhhHHH-
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-YLSLAPV-   77 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~-~~~lvp~-   77 (136)
                      +++.++++|++|||||+|+.|++++++.+|+.++  .+++.+.++|+|+|++|..+|+.++.+++..+|+. +..+.+. 
T Consensus       124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~  203 (591)
T 2vgl_B          124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN  203 (591)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence            4588999999999999999999999999999998  48999999999999999999999999999999876 4445443 


Q ss_pred             ---HHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028         78 ---FFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP  134 (136)
Q Consensus        78 ---lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~  134 (136)
                         +.+.+.. ++||+|+++|++|+.+++.+++..+++.+.+.+.+++.+++++..+++.
T Consensus       204 ~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~  262 (591)
T 2vgl_B          204 INKLLTALNE-CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKV  262 (591)
T ss_dssp             HHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred             HHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence               4444444 7999999999999999999999999999999999999999888877764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.44  E-value=2.9e-06  Score=61.67  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      +.++|+++++.+|..|+.++..+...+++...     ..++.+.++|.+.|+.|...++..+..++..+++..     ..
T Consensus        17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g   96 (210)
T 4db6_A           17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG   96 (210)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence            56788999999999999999999987776543     367999999999999999999999999998776532     23


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWTG  131 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~~  131 (136)
                      .+|.++++|.+ ++|-.+......|..++..++...     ...++.+.++|++.+......+
T Consensus        97 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  158 (210)
T 4db6_A           97 ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA  158 (210)
T ss_dssp             CHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             CHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence            68999999987 689999999999999997665442     3467888888887765544433

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.34  E-value=5.4e-06  Score=61.07  Aligned_cols=128  Identities=19%  Similarity=0.135  Sum_probs=104.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~   72 (136)
                      -+.++|+++++.+|..|+.++..+...+|+...     ..++.+.++|.+.|+.|...++..+..++..+++..     .
T Consensus        90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  169 (252)
T 4hxt_A           90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA  169 (252)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            356788999999999999999999987776543     368999999999999999999999999998776532     2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhhhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSCWTG  131 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv~~~  131 (136)
                      ..+|.++++|.. ++|..+...+.+|..++..++...+.     .++.+.+++++.+....-.+
T Consensus       170 ~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  232 (252)
T 4hxt_A          170 GGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA  232 (252)
T ss_dssp             THHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             cCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence            478999999986 78999999999999999876654433     46888888887776554444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.33  E-value=7.2e-06  Score=60.36  Aligned_cols=127  Identities=18%  Similarity=0.121  Sum_probs=102.7

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----   72 (136)
                      .+.++|+++++.+|..|+.++..+...+++...     ..++.+.++|.+.|+.|..+++.++..++..+++...     
T Consensus        48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  127 (252)
T 4hxt_A           48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA  127 (252)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            356788999999999999999999887666443     3689999999999999999999999999987765332     


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~  130 (136)
                      ..+|.++++|+. ++|..+...+..|+.++..++...     ...++.+.+++++.+......
T Consensus       128 ~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  189 (252)
T 4hxt_A          128 GGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE  189 (252)
T ss_dssp             THHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             CCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHH
Confidence            468999999986 789999999999999998665432     346788888888766544433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.32  E-value=5.7e-06  Score=60.05  Aligned_cols=127  Identities=13%  Similarity=0.170  Sum_probs=102.7

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~   72 (136)
                      -+.++|+++++.+|..|+.++..+...+++...     +.++.+.++|.+.|+.|...++.++..++..+++..     .
T Consensus        58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  137 (210)
T 4db6_A           58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA  137 (210)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            356788999999999999999999877765432     367999999999999999999999999998777643     2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~~  130 (136)
                      ..+|.++++|.. +++-.+...+..|..+...++...+     ..++.+.+++++.+....-.
T Consensus       138 ~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  199 (210)
T 4db6_A          138 GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE  199 (210)
T ss_dssp             THHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred             CcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence            468999999987 6999999999999999877554333     35678888888766654433

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.26  E-value=5.4e-06  Score=61.70  Aligned_cols=126  Identities=13%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~   72 (136)
                      -+.++|+++++.+|+.|+.++..+....+..    ++ ..++.+.++|.+.|+.|...++..+..++..+++..     .
T Consensus       100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  179 (252)
T 4db8_A          100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA  179 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence            3567889999999999999999998766543    12 368999999999999999999999999998776532     3


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCW  129 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~  129 (136)
                      ..+|.++++|.. ++|..+...+.+|..+...++...+     ...+.+.+++++.+...--
T Consensus       180 ~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~  240 (252)
T 4db8_A          180 GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK  240 (252)
T ss_dssp             TCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred             CCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence            579999999987 6999999999999999977665433     3556677777776654433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.17  E-value=4.3e-06  Score=71.14  Aligned_cols=127  Identities=14%  Similarity=0.146  Sum_probs=82.2

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      +|.+++++++..+||-+.+++-.+.+.+||.+....+.+.+-|.|+|+.+-..|+..+..+.  .|+....++|.+.+.|
T Consensus        53 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L  130 (591)
T 2vgl_B           53 DVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCL  130 (591)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHc
Confidence            56677777777777777777777777777766666677777777777777777765555442  5556666677777777


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHh--hhHHHHHHHHhccchhhhhhhc
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGK--KLIEPLTNLIHRIISLSCWTGI  132 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~--~l~e~l~~iL~~~~s~sv~~~~  132 (136)
                      .+ ++|...-+-...+..+...+|+...  .+.+.+.+.|+..+..++.+|+
T Consensus       131 ~d-~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~  181 (591)
T 2vgl_B          131 KD-EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAV  181 (591)
T ss_dssp             SC-SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             CC-CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHH
Confidence            64 6777766666666555433333222  4667777777666655555443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.14  E-value=1.5e-05  Score=59.20  Aligned_cols=129  Identities=12%  Similarity=0.132  Sum_probs=102.1

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----   72 (136)
                      .++.++|+++++.+|..|+.++.++....++...     ..++.+.++|.+.++.|...++..+..++..+++...    
T Consensus        15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (252)
T 4db8_A           15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID   94 (252)
T ss_dssp             HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3577899999999999999999887766443322     3679999999999999999999999999987765332    


Q ss_pred             -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhhhhhh
Q psy11028         73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLSCWTG  131 (136)
Q Consensus        73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~sv~~~  131 (136)
                       ..+|.++++|+. +++-.+...+..|+.++..++..     ....++.+.+.|++.+......+
T Consensus        95 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  158 (252)
T 4db8_A           95 AGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA  158 (252)
T ss_dssp             TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             cCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence             368999999988 78999999999999999776432     23467888888887765544433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.97  E-value=0.00014  Score=60.27  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=101.1

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHC-CCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----   72 (136)
                      -+.++|.++++.+|+.|+.|+..+.+.. |..-    ...++.+.++|.+.|+.|...++..+..++..+++...     
T Consensus       219 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~  298 (530)
T 1wa5_B          219 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV  298 (530)
T ss_dssp             HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence            3567788899999999999999999765 4322    24789999999999999999999999999987765332     


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~  130 (136)
                      ..+|.++.+|.. +++..+...+++|+.++..++...     ..+.+.+.++|++.+....-.
T Consensus       299 ~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~  360 (530)
T 1wa5_B          299 RIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE  360 (530)
T ss_dssp             TCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             CcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHH
Confidence            578999999986 789999999999999998765433     356778888888776544333

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.94  E-value=0.00017  Score=52.08  Aligned_cols=86  Identities=20%  Similarity=0.296  Sum_probs=41.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      +.++|+++++.+|..|+.++.++-.      +..++.+.++|.|+|+.|-..++..+..+..  +    ..+|.+.+.|.
T Consensus        19 ~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~   86 (201)
T 3ltj_A           19 YIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----RAVEPLIKALK   86 (201)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----HHHHHHHHHHc
Confidence            4455666666666666666554321      1234445555555555555555554444321  1    23444444444


Q ss_pred             cCCChhHHHHHHHHhhhcC
Q psy11028         84 TSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        84 ~v~~pWlqikiLk~L~~l~  102 (136)
                      . ++|+.+...++.|+.++
T Consensus        87 d-~~~~vr~~a~~aL~~~~  104 (201)
T 3ltj_A           87 D-EDGWVRQSAAVALGQIG  104 (201)
T ss_dssp             C-SSHHHHHHHHHHHHHHC
T ss_pred             C-CCHHHHHHHHHHHHHhC
Confidence            3 44444444444444443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.93  E-value=0.00012  Score=55.45  Aligned_cols=98  Identities=10%  Similarity=0.078  Sum_probs=49.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHH-hhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK-EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~-~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      +.++|+++++.+|..|+.++.++-. .++.+...++.+. .++.|+|+.|-.+++..+-.+...+|......+|.+...|
T Consensus        59 L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l  137 (280)
T 1oyz_A           59 AIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA  137 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence            3445555566666666655544321 1222333333443 2345666666666666666666555444444555555555


Q ss_pred             ccCCChhHHHHHHHHhhhcCC
Q psy11028         83 TTSSNNWMLIKIIKLFGALTP  103 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~  103 (136)
                      .. ++|+.+......|+.++.
T Consensus       138 ~d-~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A          138 FD-KSTNVRRATAFAISVIND  157 (280)
T ss_dssp             TC-SCHHHHHHHHHHHHTC--
T ss_pred             hC-CCHHHHHHHHHHHHhcCC
Confidence            44 455555555555555543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.90  E-value=7.1e-05  Score=61.14  Aligned_cols=107  Identities=14%  Similarity=0.047  Sum_probs=89.1

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT   84 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~   84 (136)
                      .+=++|++|++|=-|+-++-++  .+|+.++...+.+++.|.|+||.|-.+|+-....+...+|+..+.++..+.+.+..
T Consensus       110 ~kDl~~~N~~iR~lALRtL~~I--~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d  187 (355)
T 3tjz_B          110 TKDMTGKEDSYRGPAVRALCQI--TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASS  187 (355)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHH--CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTC
T ss_pred             HhhcCCCcHhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Confidence            4456789999998887777766  57889999999999999999999999999999999999999888899999888876


Q ss_pred             CCChhHHHHHHHHhhhcCCCChHHHhhhHH
Q psy11028         85 SSNNWMLIKIIKLFGALTPLEPRLGKKLIE  114 (136)
Q Consensus        85 v~~pWlqikiLk~L~~l~~~e~~~~~~l~e  114 (136)
                       .+|..|..-+.+|..+...|+..-.+++.
T Consensus       188 -~n~~V~~~Al~lL~ei~~~d~~a~~kLv~  216 (355)
T 3tjz_B          188 -DNIMVQYHALGLLYHVRKNDRLAVSKMIS  216 (355)
T ss_dssp             -SSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CCccHHHHHHHHHHHHHhhchHHHHHHHH
Confidence             79999999999888887766533344433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.87  E-value=0.00023  Score=51.69  Aligned_cols=27  Identities=11%  Similarity=0.351  Sum_probs=12.5

Q ss_pred             HHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         75 APVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        75 vp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      +|.+...|.. ++|+.+....+.|+.++
T Consensus       145 ~~~L~~~l~d-~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          145 VEPLIKALKD-EDGWVRQSAADALGEIG  171 (211)
T ss_dssp             HHHHHHHTTC-SSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence            3444444432 44555555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.86  E-value=0.00031  Score=51.00  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+.++|+++++.||..|+.++.++-.      +...+.+.++|.|+|+.|-.+++..+..+..      ...+|.+...|
T Consensus        54 ~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l  121 (211)
T 3ltm_A           54 PLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKAL  121 (211)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHH
Confidence            45678899999999999999987642      3466788899999999999999988877642      24778889988


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhh
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCW  129 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~  129 (136)
                      .. ++|..+...+..|+.++..      ...+.+.+.++..+..+-.
T Consensus       122 ~d-~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~  161 (211)
T 3ltm_A          122 KD-EDWFVRIAAAFALGEIGDE------RAVEPLIKALKDEDGWVRQ  161 (211)
T ss_dssp             TC-SSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSSHHHHH
T ss_pred             hC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHcCCCHHHHH
Confidence            66 8999999999999998753      3556666666655554433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.84  E-value=0.00021  Score=56.92  Aligned_cols=120  Identities=16%  Similarity=0.199  Sum_probs=95.4

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHh--HCCCC---ch--hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcch--
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFL--KFPDA---LR--PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNY--   71 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~--~~P~~---v~--~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~--   71 (136)
                      +.+.+.|+++++.+|..|+.++.++..  .+|..   ++  ..++.+.++|.+. ++.|...++..+..++..+++..  
T Consensus        23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  102 (450)
T 2jdq_A           23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI  102 (450)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            346677889999999999999999875  34432   22  4688999999988 89999999999999998765432  


Q ss_pred             ---hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhc
Q psy11028         72 ---LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHR  122 (136)
Q Consensus        72 ---~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~  122 (136)
                         ...+|.+++.|+. ++|-.+...+..|..++..++...     ....+.+.++++.
T Consensus       103 ~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~  160 (450)
T 2jdq_A          103 VIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK  160 (450)
T ss_dssp             HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred             HHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence               3579999999987 789999999999999988765433     2467788888875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.83  E-value=0.00022  Score=54.04  Aligned_cols=108  Identities=10%  Similarity=0.036  Sum_probs=76.3

Q ss_pred             hcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCC
Q psy11028          7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSS   86 (136)
Q Consensus         7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~   86 (136)
                      +++++++.||..|+.++.++...+|...+..++.+.++|.|+|+.|-.+++..+..+..  |    ..+|.+...|+. +
T Consensus        99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~----~~~~~L~~~l~d-~  171 (280)
T 1oyz_A           99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K----ATIPLLINLLKD-P  171 (280)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTC-S
T ss_pred             HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H----HHHHHHHHHHcC-C
Confidence            45788999999999999999887776666778888888999999988888777665433  1    367777777765 6


Q ss_pred             ChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028         87 NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        87 ~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                      +|+........|+.++..++    ...+.+.+.++..+.
T Consensus       172 ~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~  206 (280)
T 1oyz_A          172 NGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNE  206 (280)
T ss_dssp             SHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCH
T ss_pred             CHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCH
Confidence            77777777777777765443    344555555554443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.83  E-value=0.00032  Score=50.60  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL   63 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l   63 (136)
                      +.++|+++++.||..|+.++.++-  +    +...+.+.++|.|+|+.|-.+++..+..+
T Consensus        50 L~~~l~~~~~~vr~~a~~~L~~~~--~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  103 (201)
T 3ltj_A           50 LIKALKDEDAWVRRAAADALGQIG--D----ERAVEPLIKALKDEDGWVRQSAAVALGQI  103 (201)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHC--C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhC--C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            445566666666666666665542  1    12345555566666666666655555443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.83  E-value=1.3e-05  Score=68.73  Aligned_cols=123  Identities=17%  Similarity=0.064  Sum_probs=58.8

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      +|.+++++++...||-+.+++..+...+||.....+..+.+-|.|+|+.|...|+..+..+.  .|+....++|.+.+.|
T Consensus        74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L  151 (618)
T 1w63_A           74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLL  151 (618)
T ss_dssp             HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555544444455555555555555555555555543  2333334444444444


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      +. ++|+..-+-...+..+....|+..+.+.+.+.+.|...+..++
T Consensus       152 ~~-~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~  196 (618)
T 1w63_A          152 KT-SNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVL  196 (618)
T ss_dssp             HS-CCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHH
Confidence            44 4454444444444433333333333444444444444443333

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.79  E-value=0.0005  Score=51.43  Aligned_cols=121  Identities=15%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL----   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~----   72 (136)
                      +++.+.+++++...|+-|+.++..+....|+...    .+.+.+.++|. |+|..|..+++..+..++..-.+.|.    
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3567788999999999999999999998776443    46788999995 99999999999999999975544343    


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhh-----------------hcCCCChHHHhhhHHHHHHHHhcc
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFG-----------------ALTPLEPRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~-----------------~l~~~e~~~~~~l~e~l~~iL~~~  123 (136)
                      .++|.+...+++ +++-.+-.....+.                 .+...+++......+.+..++.+.
T Consensus        98 ~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           98 ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            456666666664 33333333333333                 333344555555666666555443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.77  E-value=0.00027  Score=56.24  Aligned_cols=124  Identities=13%  Similarity=0.047  Sum_probs=98.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~   73 (136)
                      +.++++++++.+|..|+-++..+....++...     ..++.+.++|.+.|+.|..+++..+..++..+++...     .
T Consensus       197 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  276 (450)
T 2jdq_A          197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS  276 (450)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence            56778899999999999999999876654332     3678999999999999999999999999887764322     4


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv  128 (136)
                      .+|.++++|.. +++-.+...+..|+.++...+...     ..+.+.+.+.|+..+..+-
T Consensus       277 ~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~  335 (450)
T 2jdq_A          277 ALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR  335 (450)
T ss_dssp             HHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred             cHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            78999999987 689999999999999997665433     3566778888877665443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.75  E-value=0.0007  Score=50.61  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             hhhhcC-CCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHH
Q psy11028          4 YFIYLT-STKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVF   78 (136)
Q Consensus         4 V~klL~-~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~l   78 (136)
                      +.+++. ++++.||+.|+.|+-.+...-...++    .+++.+.+.+.|+++.|-.++...+.+++..-+  +..++|.+
T Consensus        61 L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l  138 (242)
T 2qk2_A           61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESI  138 (242)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            456774 99999999999999999976544333    367889999999999999999999999988643  56789999


Q ss_pred             HHHhccCCChhHHHHHHHHhhhc-CCCC-----hHHHhhhHHHHHHHHhccchhh
Q psy11028         79 FKLMTTSSNNWMLIKIIKLFGAL-TPLE-----PRLGKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        79 v~iL~~v~~pWlqikiLk~L~~l-~~~e-----~~~~~~l~e~l~~iL~~~~s~s  127 (136)
                      ...|++ .+|..+...+.++..+ ...+     ...-..+.+.+.+.++..+..+
T Consensus       139 ~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~V  192 (242)
T 2qk2_A          139 VESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV  192 (242)
T ss_dssp             HHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHH
Confidence            999886 6888999999999884 3322     2334578888888887666543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.75  E-value=3.2e-05  Score=66.67  Aligned_cols=129  Identities=10%  Similarity=0.045  Sum_probs=91.1

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      .+|.+++++++...||-+.+++-.+...+||.+.-....+++=|.|+|+-+.+.|+..+..+  ..|+....+.|.+.+.
T Consensus        77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i--~~~e~~~~l~~~v~~~  154 (621)
T 2vgl_A           77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV--GSREMAEAFAGEIPKI  154 (621)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--CCHHHHHHHTTHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHH
Confidence            46788888888888888888888888888887776778888888888888888888888777  4567777788888888


Q ss_pred             hc-cCCChhHHHHHHHHhhhcCCCChHHHh--hhHHHHHHHHhccchhhhhhhc
Q psy11028         82 MT-TSSNNWMLIKIIKLFGALTPLEPRLGK--KLIEPLTNLIHRIISLSCWTGI  132 (136)
Q Consensus        82 L~-~v~~pWlqikiLk~L~~l~~~e~~~~~--~l~e~l~~iL~~~~s~sv~~~~  132 (136)
                      |. +-++|...=+-.-.+..+...+|+...  .+.+.+.+.|+..+..++.+++
T Consensus       155 l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~  208 (621)
T 2vgl_A          155 LVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAAT  208 (621)
T ss_dssp             HHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHH
Confidence            83 236777754433333322223344444  6778888888776665555543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.75  E-value=0.00054  Score=56.44  Aligned_cols=123  Identities=17%  Similarity=0.219  Sum_probs=98.8

Q ss_pred             hhhhc-CCCChHHHHHHHHHHHHHHhHCCCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYL-TSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL-~~s~~~VRKKA~l~~~rl~~~~P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      +.++| +++++.+|+.|+-++..+....|...    ...++.+.++|.+.|+.|...++..+..++..++...     ..
T Consensus       207 Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g  286 (528)
T 4b8j_A          207 LLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (528)
T ss_dssp             HHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            45667 67899999999999999998866533    3478999999999999999999999999987665432     24


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhcc-chhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRI-ISLS  127 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~-~s~s  127 (136)
                      .+|.++++|.. +++..+...+++|+.++..++...     ..+++.+.++|++. +...
T Consensus       287 ~v~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  345 (528)
T 4b8j_A          287 VCPRLVELLLH-PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI  345 (528)
T ss_dssp             CHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHcC-CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence            79999999987 689999999999999998765433     34578888888877 4433

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.71  E-value=0.00053  Score=56.47  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=102.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcc----hhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKN----YLS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~----~~~   73 (136)
                      +.++|+++++.||..|+-++..+....|+.-.     ..++.+.++| .+.++.|...++..+..++...|..    ...
T Consensus       165 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  244 (528)
T 4b8j_A          165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP  244 (528)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence            56788999999999999999999877665322     3678899999 7889999999999999999876532    346


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhhhc
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWTGI  132 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~~~  132 (136)
                      .+|.++++|.. +++..+...+..|..++...+...     ..+.+.+.++|++.+......++
T Consensus       245 ~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~  307 (528)
T 4b8j_A          245 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL  307 (528)
T ss_dssp             HHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence            78999999976 799999999999999997765432     24677899999888765555443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.67  E-value=0.00047  Score=57.02  Aligned_cols=125  Identities=16%  Similarity=0.073  Sum_probs=100.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      +.++|.++++.+|..|+.++..+....++...     ..++.+.++|.+.++.|..+++..+..++..++...     ..
T Consensus       262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  341 (530)
T 1wa5_B          262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG  341 (530)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            56788999999999999999999987765443     367899999999999999999999999988776532     25


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCW  129 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~  129 (136)
                      .+|.++.+|.. +++-.+...+.+|+.++...+...     ..+++.+.++|+..+....-
T Consensus       342 ~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  401 (530)
T 1wa5_B          342 VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK  401 (530)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence            78999999987 588899999999999987665433     35677888888776554433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.67  E-value=0.00017  Score=57.05  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             hhhhcCC-CChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028          4 YFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----   72 (136)
Q Consensus         4 V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----   72 (136)
                      ..++|++ +++.+|++|+-|+..+.+.+|+..+     ..++.+.++|.+.|+.|...++.++..++..+++...     
T Consensus       129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~  208 (296)
T 1xqr_A          129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  208 (296)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence            3567764 5899999999999999998876443     3678999999999999999999999999998876422     


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP  106 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~  106 (136)
                      ..+|.++++|.. +++=.|...++.|..+....+
T Consensus       209 g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          209 GMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             THHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHcC-CChhHHHHHHHHHHHHHhCCh
Confidence            469999999987 688999999999998877654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.67  E-value=0.00023  Score=56.33  Aligned_cols=123  Identities=20%  Similarity=0.189  Sum_probs=97.5

Q ss_pred             hhh-hcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chh-
Q psy11028          4 YFI-YLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYL-   72 (136)
Q Consensus         4 V~k-lL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~-   72 (136)
                      +.. +|+++++.||..|+.|+-.+.+.+|+.    ++ +.++.|.++|. |.+.+|...++..+..+++.+|.   .|. 
T Consensus        86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~  165 (296)
T 1xqr_A           86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR  165 (296)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            345 899999999999999999999988854    22 36889999997 56899999999999999988765   343 


Q ss_pred             -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhh
Q psy11028         73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~s  127 (136)
                       ..+|.++++|+. +++=+|.+...+|+.+...++..     ....++.+.+.|.+.+..+
T Consensus       166 ~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v  225 (296)
T 1xqr_A          166 LDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF  225 (296)
T ss_dssp             TTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred             CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence             469999999987 79999999999999887544322     3446677888887765543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.39  E-value=0.0014  Score=54.47  Aligned_cols=122  Identities=15%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCC---Cch-hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPD---ALR-PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYL--   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~---~v~-~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~--   72 (136)
                      .|+.+.++++++-.+..|+-++.|+.-+  +|.   +++ ..++.|.++|.+ .++.+...|..++..|+..+++.-.  
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4677889999999999999999999744  442   344 368999999975 4688999999999999988876433  


Q ss_pred             ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccc
Q psy11028         73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRII  124 (136)
Q Consensus        73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~  124 (136)
                         ..+|.|++.|+. +++-++-..+..|+.++.+.+...+.     .++.+..+|+..+
T Consensus       140 v~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~  198 (510)
T 3ul1_B          140 VDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD  198 (510)
T ss_dssp             HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred             HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence               359999999986 89999999999999999877665443     4667888887544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.34  E-value=0.0018  Score=52.63  Aligned_cols=122  Identities=14%  Similarity=0.087  Sum_probs=95.0

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAP   76 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp   76 (136)
                      +.++++++++.+|+.|+-++..+.+..|..  ....++.+.++|.+.|+.|...++..+..++..+++...     ..+|
T Consensus       232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  311 (529)
T 1jdh_A          232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  311 (529)
T ss_dssp             HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence            456778889999999999999998876543  345789999999999999999999999999887764322     3589


Q ss_pred             HHHHHhccC-CChhHHHHHHHHhhhcCCCChHH--------HhhhHHHHHHHHhccch
Q psy11028         77 VFFKLMTTS-SNNWMLIKIIKLFGALTPLEPRL--------GKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        77 ~lv~iL~~v-~~pWlqikiLk~L~~l~~~e~~~--------~~~l~e~l~~iL~~~~s  125 (136)
                      .++++|... .++-.+...++.|+.++..++..        ....++.+.++|++.+.
T Consensus       312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~  369 (529)
T 1jdh_A          312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  369 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc
Confidence            999999863 34788899999999998754321        12456778888877654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.34  E-value=0.002  Score=56.32  Aligned_cols=100  Identities=11%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHC-CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch---------hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---------LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~---------~~   73 (136)
                      +.+.|.++++.||++|+.|+..+.+.+ |+.-+++.+.+.+.+.+.|+.+.-+++..+..+++..|+.+         ..
T Consensus        95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~  174 (852)
T 4fdd_A           95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI  174 (852)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence            456688999999999999999999886 45556688999999999999999999999999999877643         34


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCC
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPL  104 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~  104 (136)
                      ++|.+.+.++. +++=.+...++.|..+...
T Consensus       175 il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          175 MIPKFLQFFKH-SSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             HHHHHTTTTTC-SSHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc
Confidence            56666666653 4555666666666655543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.27  E-value=0.0017  Score=53.44  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=95.3

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----   72 (136)
                      +.+.++|+++++.++..|+.++.++...+++.-    + ..++.+.++|.+.++.+.-.|+..+..++..+++.-.    
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            456788999999999999999999987776532    2 3689999999999999999999999999987665322    


Q ss_pred             -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-hH--HHhhhHHHHHHHH
Q psy11028         73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PR--LGKKLIEPLTNLI  120 (136)
Q Consensus        73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e-~~--~~~~l~e~l~~iL  120 (136)
                       ..+|.|+++|+..+++=.|-.....|..++..+ .+  ..+..++.+.++|
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV  136 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence             359999999996678999999999998887653 22  2225677777777

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0051  Score=47.01  Aligned_cols=82  Identities=12%  Similarity=0.045  Sum_probs=65.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHH-HHhHCCCCc--h----hhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCC-cch--
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYK-VFLKFPDAL--R----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNP-KNY--   71 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~r-l~~~~P~~v--~----~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p-~~~--   71 (136)
                      +....+++++..-||-|..++.. +...+|++.  .    .+++.+.+.+ +|+|+.|..+|+..+..+++.-. ..|  
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44567789999999999999999 998888776  2    3577888999 89999999999999999987443 223  


Q ss_pred             ---hhhHHHHHHHhcc
Q psy11028         72 ---LSLAPVFFKLMTT   84 (136)
Q Consensus        72 ---~~lvp~lv~iL~~   84 (136)
                         ..++|.++..++.
T Consensus       100 ~y~~~llp~ll~~l~d  115 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKE  115 (249)
T ss_dssp             HHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHcC
Confidence               3467788887774

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.16  E-value=0.0014  Score=44.71  Aligned_cols=106  Identities=11%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+..+|+++++.+|..|+.++.++-  +     ..++.+.++|.|+|+.|-.+++..+-.+..      ...++.+...|
T Consensus        16 ~l~~~L~~~~~~vR~~A~~~L~~~~--~-----~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L   82 (131)
T 1te4_A           16 PRGSHMADENKWVRRDVSTALSRMG--D-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLL   82 (131)
T ss_dssp             -----CCSSCCCSSSSCCSSTTSCS--S-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhC--c-----hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Confidence            3556778888888888887766431  1     124677788888888888777766554431      24577777777


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      .. ++|+........|+.++..      ...+.+.+.++..+..+-
T Consensus        83 ~d-~~~~VR~~A~~aL~~~~~~------~a~~~L~~~l~d~~~~vr  121 (131)
T 1te4_A           83 ED-DSGFVRSGAARSLEQIGGE------RVRAAMEKLAETGTGFAR  121 (131)
T ss_dssp             HH-CCTHHHHHHHHHHHHHCSH------HHHHHHHHHTTSCCTHHH
T ss_pred             cC-CCHHHHHHHHHHHHHhCcH------HHHHHHHHHHhCCCHHHH
Confidence            65 6888888888888888732      355666666766555443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.16  E-value=0.002  Score=56.22  Aligned_cols=128  Identities=12%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc---------hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL---------RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v---------~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~   72 (136)
                      +++.++++++++.+|..|..|+.++++..|+..         ...++.+.+.+.|.++.|-.+|+..+..+....++.+.
T Consensus       131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            356678899999999999999999999988763         34678889999999999999999999888877665443


Q ss_pred             ----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH----HhhhHHHHHHHHhccchhhhhh
Q psy11028         73 ----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL----GKKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        73 ----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~----~~~l~e~l~~iL~~~~s~sv~~  130 (136)
                          .+++.+...+.. +++-.+...++.|..+....++.    -+.+.+.+...++..+..+...
T Consensus       211 ~~~~~~l~~l~~~~~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~  275 (852)
T 4fdd_A          211 LHIDSFIENLFALAGD-EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALE  275 (852)
T ss_dssp             TSHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence                455555555544 67777777777777666544432    2345556666666555444333

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.14  E-value=0.0036  Score=51.20  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=71.7

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhHC-CCCc-hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc------chhhhHH
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL-RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK------NYLSLAP   76 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v-~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~------~~~~lvp   76 (136)
                      .++++++++.||+.|+.++..+.... ++.. +.+++.+.+++.|.++.|-.++...+-.++..-+.      .+..++|
T Consensus       248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  327 (588)
T 1b3u_A          248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP  327 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence            34556777777777777777777643 2222 23567777777788888877777777777765543      2345666


Q ss_pred             HHHHHhccCCChhHHHHHHHHhhhcCC--CChHHHhhhHHHHHHHHhccch
Q psy11028         77 VFFKLMTTSSNNWMLIKIIKLFGALTP--LEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        77 ~lv~iL~~v~~pWlqikiLk~L~~l~~--~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                      .+...+.+ +++...-...+.|..+++  ++......+.+.+.+.++..+.
T Consensus       328 ~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~  377 (588)
T 1b3u_A          328 CIKELVSD-ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECP  377 (588)
T ss_dssp             HHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCH
T ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCch
Confidence            66666654 455555555555555542  1111223455556666655443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.13  E-value=0.0026  Score=52.97  Aligned_cols=124  Identities=10%  Similarity=0.078  Sum_probs=98.7

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      +.++|+++++.++.-|+.|+..+....++..+     ..++.+.++|.+.++.|...++..+..++..++...     ..
T Consensus       256 L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g  335 (529)
T 3tpo_A          256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG  335 (529)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence            56788999999999999999999887665433     368999999999999999999999999988776532     24


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv  128 (136)
                      .++.++.+|.. +++-.+.....+|+.++..++...     ..+++.+.++|++.+..+.
T Consensus       336 ~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          336 ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             GGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            68889999876 789999999999998887665432     3466778888877765443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.07  E-value=0.003  Score=51.70  Aligned_cols=122  Identities=15%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCC--CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc-hhhhHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN-YLSLAPVFF   79 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~--~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~-~~~lvp~lv   79 (136)
                      +.++|+++++.||..|+.++..+....++  ..+.+.+.+.+++.|++..|-.+++..+..++..-+ +. ...+.|.+.
T Consensus       446 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~  525 (588)
T 1b3u_A          446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL  525 (588)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45667888889999999998888876443  234467778888888888888888888888876432 22 245777777


Q ss_pred             HHhccCCChhHHHHHHHHhhhcCC-CChH-HHhhhHHHHHHHHhccchh
Q psy11028         80 KLMTTSSNNWMLIKIIKLFGALTP-LEPR-LGKKLIEPLTNLIHRIISL  126 (136)
Q Consensus        80 ~iL~~v~~pWlqikiLk~L~~l~~-~e~~-~~~~l~e~l~~iL~~~~s~  126 (136)
                      +.+.. ++|..+...++.|+.+.. ..+. ....+.+.+.++++..+..
T Consensus       526 ~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~  573 (588)
T 1b3u_A          526 RMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD  573 (588)
T ss_dssp             HGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchh
Confidence            77766 688888888988887764 2222 2245666666655544443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.06  E-value=0.0036  Score=56.72  Aligned_cols=121  Identities=7%  Similarity=0.051  Sum_probs=90.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCC-CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc----------chh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD-ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----------NYL   72 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~----------~~~   72 (136)
                      +.+.|.++++.+|+-|+.|+..+....++ .++.+++.+.+.|.|.++.|-.++...+..++..-+.          .|.
T Consensus        53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~  132 (1230)
T 1u6g_C           53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK  132 (1230)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence            56677899999999999999999987765 3345678888888999999988888888888876543          377


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCC-----CChHHHhhhHHHHHHHHhccch
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTP-----LEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~-----~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                      .++|.+.+.+.+.+++-.+...+.+|..+..     ..| ....+.+.+.+.|++.++
T Consensus       133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~  189 (1230)
T 1u6g_C          133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRL  189 (1230)
T ss_dssp             HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSH
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcH
Confidence            8999999999755677777777877776541     112 234566666666665543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.06  E-value=0.0055  Score=48.02  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=94.2

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC-----chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC---cchhhhH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNYLSLA   75 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p---~~~~~lv   75 (136)
                      +..+|++.++.+|=.|..++=.+...-|+.     ++.+++.+.+++.++|-.|..-|+-++-.+....|   +.|..+.
T Consensus        38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~  117 (265)
T 3b2a_A           38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAA  117 (265)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            467889999999999999999999886654     45688999999999999999999999999998765   6899999


Q ss_pred             HHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028         76 PVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR  122 (136)
Q Consensus        76 p~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~  122 (136)
                      ..+.++++ .+++-++..+...++.+.+-++  ..++.+.+..++.+
T Consensus       118 ~aL~dlik-~~~~il~~eaae~Lgklkv~~~--~~~V~~~l~sLl~S  161 (265)
T 3b2a_A          118 KTLVSLLE-SPDDMMRIETIDVLSKLQPLED--SKLVRTYINELVVS  161 (265)
T ss_dssp             HHHHHHTT-SCCHHHHHHHHHHHHHCCBSCC--CHHHHHHHHHHHTC
T ss_pred             HHHHHHhc-CCCchHHHHHHHHhCcCCcccc--hHHHHHHHHHHHhC
Confidence            99999998 4777777777777777754433  45666666666633

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0054  Score=46.86  Aligned_cols=124  Identities=11%  Similarity=0.117  Sum_probs=92.0

Q ss_pred             hhhhc-CCCChHHHHHHHHHHHHHHhHCC-CCch-h----hHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcc----h
Q psy11028          4 YFIYL-TSTKPYLRKKAVLMMYKVFLKFP-DALR-P----AFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKN----Y   71 (136)
Q Consensus         4 V~klL-~~s~~~VRKKA~l~~~rl~~~~P-~~v~-~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~----~   71 (136)
                      +.+.+ +++++.||..|+.|+-.+...-. +.++ .    ..+.+.+.+.|+.+.|..++...+..+++. +|..    .
T Consensus        65 L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l  144 (249)
T 2qk1_A           65 YGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN  144 (249)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH
Confidence            44566 79999999999999999997654 3344 3    567888899999999999999999888884 4432    3


Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh-------HHH-hhhHHHHHHHHhccchhhh
Q psy11028         72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP-------RLG-KKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~-------~~~-~~l~e~l~~iL~~~~s~sv  128 (136)
                      ..+.+.+...|++ .+|-.+.-.++++..+....+       ..- ..+.+.+.+.+..+++.+=
T Consensus       145 ~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR  208 (249)
T 2qk1_A          145 EDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIR  208 (249)
T ss_dssp             HHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            3678888888876 467677777888876652111       223 6788999999988876543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.98  E-value=0.0097  Score=50.55  Aligned_cols=122  Identities=14%  Similarity=0.092  Sum_probs=95.6

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAP   76 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp   76 (136)
                      +.+++.++++.+|+.|+-++..+.+..++.  ....++.+.++|.+.|+.|...+...+..++..+++...     ..++
T Consensus       229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~  308 (644)
T 2z6h_A          229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  308 (644)
T ss_dssp             HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence            456778889999999999999999876543  345789999999999999999999999999987664221     3689


Q ss_pred             HHHHHhccCCC-hhHHHHHHHHhhhcCCCChH---H-----HhhhHHHHHHHHhccch
Q psy11028         77 VFFKLMTTSSN-NWMLIKIIKLFGALTPLEPR---L-----GKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        77 ~lv~iL~~v~~-pWlqikiLk~L~~l~~~e~~---~-----~~~l~e~l~~iL~~~~s  125 (136)
                      .++++|...++ +-.+...++.|+.++..++.   .     ....++.+.++|++.+.
T Consensus       309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~  366 (644)
T 2z6h_A          309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  366 (644)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence            99999986444 78899999999999864331   1     13467888888887653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.97  E-value=0.012  Score=53.45  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC----------chhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----------LRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYL   72 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----------v~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~   72 (136)
                      +.+.+.+.++.||..|+.|+..+....++-          .+.+++.+.+.+.| .++.+..+++..+.++++..++.+.
T Consensus        91 Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~  170 (1230)
T 1u6g_C           91 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV  170 (1230)
T ss_dssp             HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH
Confidence            455678899999999999999999887654          44578888889985 8899999999999999988776544


Q ss_pred             hhHHH----HHHHhccCCChhHHHHHHHHhhhcCCCCh-HHHhhhHHHHHHHHhcc
Q psy11028         73 SLAPV----FFKLMTTSSNNWMLIKIIKLFGALTPLEP-RLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        73 ~lvp~----lv~iL~~v~~pWlqikiLk~L~~l~~~e~-~~~~~l~e~l~~iL~~~  123 (136)
                      +..+.    +...|.. ++++.+.+.++.++.+...-+ .....+.+.+.+.|.+.
T Consensus       171 ~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          171 NFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN  225 (1230)
T ss_dssp             TTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC
Confidence            44444    4444444 789999999999998875432 23345666666666554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.94  E-value=0.014  Score=47.20  Aligned_cols=123  Identities=11%  Similarity=0.076  Sum_probs=89.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~   72 (136)
                      .+.++|+++++.+|..|+.++..+...+++.-.     ..++.+.++|.+.++.+...+...+..++..+++.-     .
T Consensus       105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~  184 (529)
T 1jdh_A          105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            456788999999999999999999998776432     468999999999999999999888888887665432     2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh-H---HHhhhHHHHHHHHhccch
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP-R---LGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~-~---~~~~l~e~l~~iL~~~~s  125 (136)
                      ..+|.++++|+...++-.+-...++|..++..+. +   ......+.+.++++..+.
T Consensus       185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~  241 (529)
T 1jdh_A          185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ  241 (529)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCH
T ss_pred             CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCCh
Confidence            4589999999876666666666777766664321 1   112345566666655543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.88  E-value=0.017  Score=49.07  Aligned_cols=122  Identities=11%  Similarity=0.056  Sum_probs=88.3

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~   72 (136)
                      -+.++|+++++.+|+.|+.++..+...+++..     ...++.+.++|.+.++.+..+++..+..++..+++.-     .
T Consensus       102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~  181 (644)
T 2z6h_A          102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS  181 (644)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence            35678899999999999999999998876543     2468999999999999999999889999987665421     2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccch
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIIS  125 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s  125 (136)
                      ..++.++++|++...+-.+-...++|..++... +...     ..++.+.++++..+.
T Consensus       182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~  238 (644)
T 2z6h_A          182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ  238 (644)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCH
T ss_pred             CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCH
Confidence            458999999987655555556666666666422 2222     235556666655443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.76  E-value=0.012  Score=51.61  Aligned_cols=122  Identities=14%  Similarity=0.087  Sum_probs=94.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hhhHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAP   76 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~lvp   76 (136)
                      +..+++++++.+++.|+-++..+.+..+..  .+..++.+.++|.+.|+.|..+++..+..++..+++..     ...++
T Consensus       365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~  444 (780)
T 2z6g_A          365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  444 (780)
T ss_dssp             HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence            456778889999999999999999876543  44578999999999999999999999999988765432     24689


Q ss_pred             HHHHHhccCCC-hhHHHHHHHHhhhcCCCChHH--------HhhhHHHHHHHHhccch
Q psy11028         77 VFFKLMTTSSN-NWMLIKIIKLFGALTPLEPRL--------GKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        77 ~lv~iL~~v~~-pWlqikiLk~L~~l~~~e~~~--------~~~l~e~l~~iL~~~~s  125 (136)
                      .+++.|....+ +=.+...++.|+.++..++..        ....++.+.++|++.+.
T Consensus       445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~  502 (780)
T 2z6g_A          445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH  502 (780)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh
Confidence            99999986433 378889999999998644321        23456778888877664

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.73  E-value=0.004  Score=51.75  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~   73 (136)
                      +.++|.++++.++..|+.|+..+....++..+     ...+.+.++|.+.+..|...++..+..++..++....     .
T Consensus       237 L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g  316 (510)
T 3ul1_B          237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG  316 (510)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence            56788999999999999999999876665432     3689999999999999999999999999887765322     3


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~s  127 (136)
                      .+|.++.+|+. +++-.+.....+|+.++..++...     ..+++.+.+++++.+..+
T Consensus       317 ~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  374 (510)
T 3ul1_B          317 ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  374 (510)
T ss_dssp             GGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             chHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence            56777777765 788889999999999887665433     345677888887766543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.72  E-value=0.00047  Score=47.17  Aligned_cols=85  Identities=16%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+.++|+++++.||..|+.++-++-.      +..++.+.++|.|+|+.|-.+++..+-.+..      ...+|.+...|
T Consensus        46 ~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l  113 (131)
T 1te4_A           46 PLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEKLA  113 (131)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHH
Confidence            45678899999999999999876542      2457788889999999999999888877642      24688888888


Q ss_pred             ccCCChhHHHHHHHHhhh
Q psy11028         83 TTSSNNWMLIKIIKLFGA  100 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~  100 (136)
                      +. ++||.+....+.|..
T Consensus       114 ~d-~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          114 ET-GTGFARKVAVNYLET  130 (131)
T ss_dssp             TS-CCTHHHHHHHHHGGG
T ss_pred             hC-CCHHHHHHHHHHHHh
Confidence            75 789998888877754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.71  E-value=0.014  Score=44.72  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=83.5

Q ss_pred             hhhhhhcCCCCh--HHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028          2 LGYFIYLTSTKP--YLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--   72 (136)
Q Consensus         2 ~~V~klL~~s~~--~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~--   72 (136)
                      +...++|+++++  -++.-|+.++..+...+++.-    + ..++.+.++|...++.+.-.|+..+..++..+++.-.  
T Consensus        11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            356788888888  899999999988888776532    2 3689999999999999999999999999987765322  


Q ss_pred             ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC
Q psy11028         73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE  105 (136)
Q Consensus        73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e  105 (136)
                         .-+|.++++|+..+++-.|-.....|..|...+
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~  126 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND  126 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence               359999999986677888888877777777544

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.67  E-value=0.021  Score=47.43  Aligned_cols=122  Identities=15%  Similarity=0.164  Sum_probs=94.7

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCC---Cch-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPD---ALR-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL--   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~---~v~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~--   72 (136)
                      .++.+.++++++-.+..|+-++.|+.-.  +|.   .++ ..++.+.++|. +.++.+...|..++..++..+++.-.  
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3567788999999999999999998744  332   233 36899999996 45688999999999999988876432  


Q ss_pred             ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccc
Q psy11028         73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRII  124 (136)
Q Consensus        73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~  124 (136)
                         ..+|.|+.+|.. +++-.+-..+..|+.++.+++.....     .++.+..+|+..+
T Consensus       159 v~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~  217 (529)
T 3tpo_A          159 VDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD  217 (529)
T ss_dssp             HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSC
T ss_pred             HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccc
Confidence               468999998876 78999999999999998877765444     3567777776544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.44  E-value=0.026  Score=48.36  Aligned_cols=100  Identities=8%  Similarity=0.059  Sum_probs=72.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCC------CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC----Ccc--
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP------DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN----PKN--   70 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P------~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~----p~~--   70 (136)
                      .+.+.++++++.||..|+.++-++....+      +.++..++.+.+.|.|. +.|-.++...+..+++.-    ++.  
T Consensus       415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~  493 (861)
T 2bpt_A          415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY  493 (861)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence            35667789999999999999999987743      34556778888888886 889988888888887742    232  


Q ss_pred             --hhhhHHHHHHHhccC-CChhHHHHHHHHhhhcCC
Q psy11028         71 --YLSLAPVFFKLMTTS-SNNWMLIKIIKLFGALTP  103 (136)
Q Consensus        71 --~~~lvp~lv~iL~~v-~~pWlqikiLk~L~~l~~  103 (136)
                        +..+++.+.+.+... .++-.+...++.++.+..
T Consensus       494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~  529 (861)
T 2bpt_A          494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE  529 (861)
T ss_dssp             GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence              345566777777653 336677777777776653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.41  E-value=0.0066  Score=48.08  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=81.3

Q ss_pred             CChHHHHHHHHHHHHHHhHC------------CCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC-Cc-chh
Q psy11028         11 TKPYLRKKAVLMMYKVFLKF------------PDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PK-NYL   72 (136)
Q Consensus        11 s~~~VRKKA~l~~~rl~~~~------------P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~-~~~   72 (136)
                      .++.+|+-|+..+-+++..+            +.+-    +...+.+.+.|.+.++.| ..+..++.+++..+ |+ .|.
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~  127 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP  127 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence            37899999999999987543            2211    224566778888999999 88888899998875 64 799


Q ss_pred             hhHHHHHHHhccCC-ChhHHHHHHHHhhhcCCCC-----hHHHhhhHHHHHHHHhcc
Q psy11028         73 SLAPVFFKLMTTSS-NNWMLIKIIKLFGALTPLE-----PRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        73 ~lvp~lv~iL~~v~-~pWlqikiLk~L~~l~~~e-----~~~~~~l~e~l~~iL~~~  123 (136)
                      .++|.++..+.+-. +|-.+--.+.+|+.+...-     ......+.+.+.+.++..
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~  184 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE  184 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC
Confidence            99999999998732 6766667777777665311     223445777777777766

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.32  E-value=0.0091  Score=52.44  Aligned_cols=127  Identities=15%  Similarity=0.136  Sum_probs=86.5

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc-----hhhhHH
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-----YLSLAP   76 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~-----~~~lvp   76 (136)
                      +++.+.|.++++.+|+.|+-.+.+.  ..+++....++.+.++|.+.|+.|--.|+..+..++..++..     ....++
T Consensus       118 ~~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~  195 (780)
T 2z6g_A          118 PTNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS  195 (780)
T ss_dssp             --------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence            3456677889999998776665433  223444567899999999999999999999999998865321     125799


Q ss_pred             HHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhhhh
Q psy11028         77 VFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        77 ~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv~~  130 (136)
                      .+++.|++-.++-.+....+.|..+...+..    .....++.+.++|++.+......
T Consensus       196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~  253 (780)
T 2z6g_A          196 AIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFH  253 (780)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence            9999998767898999999988888754321    12246677888887766544333

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.30  E-value=0.037  Score=47.45  Aligned_cols=98  Identities=13%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCC------CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC---------
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPD------ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN---------   67 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~------~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~---------   67 (136)
                      .+.+.|+++++.||..|+.++-++....++      .++..++.+.+.|.|. +.|-.+++..+..++...         
T Consensus       412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~  490 (876)
T 1qgr_A          412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD  490 (876)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence            356778999999999999999999998654      3445678888888885 888888888887776541         


Q ss_pred             -----Cc----chhhhHHHHHHHhccCC--ChhHHHHHHHHhhhc
Q psy11028         68 -----PK----NYLSLAPVFFKLMTTSS--NNWMLIKIIKLFGAL  101 (136)
Q Consensus        68 -----p~----~~~~lvp~lv~iL~~v~--~pWlqikiLk~L~~l  101 (136)
                           ++    .+..++|.+.+.+....  ++=+....++.++.+
T Consensus       491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l  535 (876)
T 1qgr_A          491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI  535 (876)
T ss_dssp             CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHH
T ss_pred             cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHH
Confidence                 11    23456777777776532  223444555555544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.30  E-value=0.037  Score=43.37  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-----cchhhhHHHHHHHhccCCChhHHHHHHHHhhhcC---CCChH
Q psy11028         36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-----KNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT---PLEPR  107 (136)
Q Consensus        36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-----~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~---~~e~~  107 (136)
                      +....+.++|.|+|+-|...++.++-++.+.-|     ..+..+.|.+++++++ .|.=.-++-+|.+.++-   |.+++
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHH
Confidence            355668899999999999999999999998855     3677899999999977 89999999999999884   55578


Q ss_pred             HHhhhHHHHHHHHhccchhhhhh
Q psy11028        108 LGKKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus       108 ~~~~l~e~l~~iL~~~~s~sv~~  130 (136)
                      ...++.+.+.+++.+.+-....+
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~e  134 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIE  134 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHH
Confidence            88999999999998666544433

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.02  E-value=0.13  Score=44.08  Aligned_cols=98  Identities=8%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHC-CC-CchhhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcc---hh----h
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKF-PD-ALRPAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKN---YL----S   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~-P~-~v~~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~---~~----~   73 (136)
                      +...|.+.++.||++++.++..+.+.+ |+ .-+++++.+.+.+.+. |+.+..+++.++..+++..+..   +.    .
T Consensus       100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~  179 (861)
T 2bpt_A          100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN  179 (861)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence            445678889999999999999999874 63 5567889999999988 9999999999999999864322   23    3


Q ss_pred             hHHHHHHHhccC-CChhHHHHHHHHhhhc
Q psy11028         74 LAPVFFKLMTTS-SNNWMLIKIIKLFGAL  101 (136)
Q Consensus        74 lvp~lv~iL~~v-~~pWlqikiLk~L~~l  101 (136)
                      +++.+...+... +++=.+...++.|..+
T Consensus       180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~  208 (861)
T 2bpt_A          180 ILIAIVQGAQSTETSKAVRLAALNALADS  208 (861)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            455555555542 2566666677776653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.94  E-value=0.036  Score=42.42  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhH
Q psy11028         11 TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM   90 (136)
Q Consensus        11 s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWl   90 (136)
                      .+|-+|=--.-++=++-+-+|++..+.+..+..++.|+|-.==+++++.+-.+....++.--++.|.+..+|.. .|.-.
T Consensus       119 gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D-~deiV  197 (253)
T 2db0_A          119 GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD-GDEIV  197 (253)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC-SSHHH
T ss_pred             CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC-cchhh
Confidence            45666666666677777778887777777777777777777777777777777777777666777777777776 56666


Q ss_pred             HHHHHHHhhhcCCCChHHHhhhH
Q psy11028         91 LIKIIKLFGALTPLEPRLGKKLI  113 (136)
Q Consensus        91 qikiLk~L~~l~~~e~~~~~~l~  113 (136)
                      ...-...|..++..+|+..+-+.
T Consensus       198 RaSaVEtL~~lA~~npklRkii~  220 (253)
T 2db0_A          198 RASAVEALVHLATLNDKLRKVVI  220 (253)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCHHHHHHHH
Confidence            66667777777776665443333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=95.85  E-value=0.055  Score=46.68  Aligned_cols=119  Identities=13%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcc---hh
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKN---YL   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~---~~   72 (136)
                      +.+.++|.++++-++..|+.++..+...+++.    ++ ..++.|.++|...++.|.-.|+..+..|+.. +++.   ..
T Consensus        51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~  130 (584)
T 3l6x_A           51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK  130 (584)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            34678889999999999999999998766652    23 3689999999999999999999999999974 4432   11


Q ss_pred             --hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh---HHHhhhHHHHHHHH
Q psy11028         73 --SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP---RLGKKLIEPLTNLI  120 (136)
Q Consensus        73 --~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~---~~~~~l~e~l~~iL  120 (136)
                        .-+|.|+++|+..+++-+|-..-..|..|+..+.   ...+.-++.+.+.+
T Consensus       131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL  183 (584)
T 3l6x_A          131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV  183 (584)
T ss_dssp             HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHT
T ss_pred             HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHH
Confidence              3599999999976778888887778888876432   12233345555544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.66  E-value=0.096  Score=42.88  Aligned_cols=119  Identities=11%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYLS   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~~   73 (136)
                      -..++|+++++.+++.|+-|+..+...+|+.-    + ..++.+.++|. +.++.+.-.++..+..++..+..   ....
T Consensus        48 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g  127 (457)
T 1xm9_A           48 KLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD  127 (457)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhc
Confidence            35678899999999999999999988656532    2 36899999998 77999999999999999987321   1125


Q ss_pred             hHHHHHHHhc--------cC-------CChhHHHHHHHHhhhcCCCChHHHh------hhHHHHHHHHhc
Q psy11028         74 LAPVFFKLMT--------TS-------SNNWMLIKIIKLFGALTPLEPRLGK------KLIEPLTNLIHR  122 (136)
Q Consensus        74 lvp~lv~iL~--------~v-------~~pWlqikiLk~L~~l~~~e~~~~~------~l~e~l~~iL~~  122 (136)
                      .+|.++++|.        +.       .++=++......|..++.. ++..+      -.++.+.++|++
T Consensus       128 ~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~  196 (457)
T 1xm9_A          128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHh
Confidence            7999999993        21       3455566888889999876 44332      456667888875

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=95.65  E-value=0.12  Score=41.53  Aligned_cols=124  Identities=12%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             hhh-cCCCChHHHHHHHHHHHHHHhHCC----CCc--hhhHHHHHhhcCCCChh----HHHHHHHHHHHHHh---cCCcc
Q psy11028          5 FIY-LTSTKPYLRKKAVLMMYKVFLKFP----DAL--RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKN   70 (136)
Q Consensus         5 ~kl-L~~s~~~VRKKA~l~~~rl~~~~P----~~v--~~~~~~l~~lL~D~d~~----V~~aal~l~~~l~~---~~p~~   70 (136)
                      .++ ++++++.+++.|+-++.-+...++    ..+  ...++.+.++|.+.+.+    |.-.+...+..++.   .+++.
T Consensus       176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  255 (354)
T 3nmw_A          176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH  255 (354)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence            444 567889999999888887766443    333  24689999999876654    88888888888886   35542


Q ss_pred             h---h--hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhhh
Q psy11028         71 Y---L--SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSCW  129 (136)
Q Consensus        71 ~---~--~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv~  129 (136)
                      -   .  ..+|.++.+|+. +++-.|..-...|..++..+++..+.     .++.+.++|+..+....-
T Consensus       256 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~  323 (354)
T 3nmw_A          256 RQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM  323 (354)
T ss_dssp             HHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence            2   1  358999999987 67778999999999998665544433     367788888776655433

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=95.62  E-value=0.042  Score=47.15  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCC-CC----chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC------cchh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFP-DA----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP------KNYL   72 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p------~~~~   72 (136)
                      +...++++++.+|..|+.++-.+....+ +.    ++..++.+.+.|.|+++.|-.++...+..+++..+      ..+.
T Consensus       371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~  450 (876)
T 1qgr_A          371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA  450 (876)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred             HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence            4466788999999999999988876543 32    23467888889999999999999999999988744      3445


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      .+++.+.+.|.+  +|-.+....+.|..+.
T Consensus       451 ~~l~~l~~~l~~--~~~v~~~a~~al~~l~  478 (876)
T 1qgr_A          451 PLLQCLIEGLSA--EPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHTTS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Confidence            677888887766  2666666666655543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.60  E-value=0.081  Score=47.03  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             hhcCCC---ChHHHHHHHHHHHHHHhHC-CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028          6 IYLTST---KPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK   66 (136)
Q Consensus         6 klL~~s---~~~VRKKA~l~~~rl~~~~-P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~   66 (136)
                      ..|+++   +|+||.+|+.++.|+.... |+..+..++.+.+.|.|+++-|-.+|...+..+++.
T Consensus       462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            334555   9999999999999998763 344556677888888999999999999999998873

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.52  E-value=0.046  Score=46.51  Aligned_cols=91  Identities=16%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChh
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW   89 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pW   89 (136)
                      .+++-.||=|+--+.|+|+..|++.+..++.+.++.+|.|.+|=..|+--+-.+|+.      ..+++++.+|.+     
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q-----  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ-----  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH-----
Confidence            356889999999999999999999999999999999999999988887777666655      347777777643     


Q ss_pred             HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHh
Q psy11028         90 MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH  121 (136)
Q Consensus        90 lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~  121 (136)
                                .|..+|+.+...+...+..++.
T Consensus       108 ----------lLqtdd~~E~~~V~~sL~sllk  129 (507)
T 3u0r_A          108 ----------LLQTDDSAEFNLVNNALLSIFK  129 (507)
T ss_dssp             ----------HTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ----------HHhccchHHHHHHHHHHHHHHh
Confidence                      3445555555555555555554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=95.45  E-value=0.063  Score=42.34  Aligned_cols=92  Identities=16%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             CChHHHHHHHHHHHHHHhHCCCCc-hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc----hhhhHHHHHHHhcc
Q psy11028         11 TKPYLRKKAVLMMYKVFLKFPDAL-RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN----YLSLAPVFFKLMTT   84 (136)
Q Consensus        11 s~~~VRKKA~l~~~rl~~~~P~~v-~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~----~~~lvp~lv~iL~~   84 (136)
                      .+..+|+-|+.|+-.+....++.+ +.+.+.+.+.|.|++..+--+++..+..+++... +.    ...++|.+++.|..
T Consensus       340 ~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d  419 (462)
T 1ibr_B          340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD  419 (462)
T ss_dssp             TCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC
T ss_pred             ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            345799999999999999988644 4578999999999999999999999999987432 32    24578888888876


Q ss_pred             CCChhHHHHHHHHhhhcCC
Q psy11028         85 SSNNWMLIKIIKLFGALTP  103 (136)
Q Consensus        85 v~~pWlqikiLk~L~~l~~  103 (136)
                       ++|..+-.....|+.++.
T Consensus       420 -~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          420 -PSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             -SCHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHH
Confidence             789999888888887764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.36  E-value=0.17  Score=42.24  Aligned_cols=123  Identities=11%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             hhh-cCCCChHHHHHHHHHHHHHHhHCCC----Cc--hhhHHHHHhhcCCCChh----HHHHHHHHHHHHHh---cCCcc
Q psy11028          5 FIY-LTSTKPYLRKKAVLMMYKVFLKFPD----AL--RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKN   70 (136)
Q Consensus         5 ~kl-L~~s~~~VRKKA~l~~~rl~~~~P~----~v--~~~~~~l~~lL~D~d~~----V~~aal~l~~~l~~---~~p~~   70 (136)
                      .++ ++++++.+++.|+-++.-+...+++    ++  ...++.+.++|.+.+.+    +.-.+..++..++.   .+++.
T Consensus       292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  371 (458)
T 3nmz_A          292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH  371 (458)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence            444 5667899999999888887764433    33  24688999999876654    88888888888886   45543


Q ss_pred             hh-----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhh
Q psy11028         71 YL-----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSC  128 (136)
Q Consensus        71 ~~-----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv  128 (136)
                      -.     ..+|.++.+|+. .++-.|..-..+|..++..+++..+.     .++.+.++|+..+....
T Consensus       372 ~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~  438 (458)
T 3nmz_A          372 RQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA  438 (458)
T ss_dssp             HHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHH
T ss_pred             HHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            21     358999999987 67789999999999998665554443     36678888876655443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=95.30  E-value=0.1  Score=45.67  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----ch
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NY   71 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~   71 (136)
                      +..+|++.+-|+|--|+.++-.++...|+.++       ..++++.++|+|+.--+-..++.++.++++.|++     .|
T Consensus       127 Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAF  206 (651)
T 3grl_A          127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAF  206 (651)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            45678999999999999999999999998443       3689999999999988999999999999999997     36


Q ss_pred             hhhHHHHHHHhcc
Q psy11028         72 LSLAPVFFKLMTT   84 (136)
Q Consensus        72 ~~lvp~lv~iL~~   84 (136)
                      ..-.+.+++|++.
T Consensus       207 EnaFe~Lf~Ii~~  219 (651)
T 3grl_A          207 ENAFERLLDIITE  219 (651)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHh
Confidence            6678889998884

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=95.21  E-value=0.21  Score=44.75  Aligned_cols=122  Identities=7%  Similarity=0.062  Sum_probs=90.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcc-h-----
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKN-Y-----   71 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~-~-----   71 (136)
                      ...+|+++++.+|+.|+-++..+.. +++.-.     ..++.|.++|.+.++.+.-.|...+..++. .+|+. |     
T Consensus       500 LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          500 LCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            4578899999999999999999974 454222     257889999998888888888888888876 46653 2     


Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchh
Q psy11028         72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISL  126 (136)
Q Consensus        72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~  126 (136)
                      ...+|+|+++|..-.+.-.+..-+..|..+....+...+.     ..+.+.++|.+.+..
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~  638 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY  638 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTT
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHH
Confidence            2468999999975445555667889999999875544333     345677777766543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=94.81  E-value=0.18  Score=38.44  Aligned_cols=87  Identities=13%  Similarity=0.049  Sum_probs=68.0

Q ss_pred             hhHHHHHhhcCCCCh--hHHHHHHHHHHHHHhcCCcch-----hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH
Q psy11028         36 PAFPRLKEKLEDPDS--GVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL  108 (136)
Q Consensus        36 ~~~~~l~~lL~D~d~--~V~~aal~l~~~l~~~~p~~~-----~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~  108 (136)
                      ..++.+.++|...|+  .+...+...+..++..+++.-     ...+|.|+++|+. +++-+|-.-...|+.++.++++-
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence            357889999988887  888888888899998776432     2459999999987 79999999999999998765433


Q ss_pred             Hh-----hhHHHHHHHHhcc
Q psy11028        109 GK-----KLIEPLTNLIHRI  123 (136)
Q Consensus       109 ~~-----~l~e~l~~iL~~~  123 (136)
                      ..     --++.+.++|+++
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~  106 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQT  106 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHccC
Confidence            22     3467788888753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=94.63  E-value=0.059  Score=45.00  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      -+.++|.+.+..+++-|+-|+..+...+|+...     ..++.+.++|.+.+..+.-.|...+..|+..+|..|+.
T Consensus       383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~~  458 (458)
T 3nmz_A          383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD  458 (458)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC---
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhhcC
Confidence            356788999999999999999999866676433     25799999999999999999999999999999998873

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=94.62  E-value=0.44  Score=42.55  Aligned_cols=121  Identities=15%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-hhh-----------HHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-RPA-----------FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN   70 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-~~~-----------~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~   70 (136)
                      -+..+|.+.++.||+.|+-|+.-+.. +|+.+ ..+           ++.+..+++..|..+-.||...+.-+...+|..
T Consensus       610 ~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i  688 (778)
T 3opb_A          610 TIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI  688 (778)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence            45678888999999999999999986 77753 232           446888899999999999999998887777643


Q ss_pred             h------hhhHHHHHHHhccC-CChhHHHHHHHHhhhcCC---CCh--------HHHhhhHHHHHHHHhccc
Q psy11028         71 Y------LSLAPVFFKLMTTS-SNNWMLIKIIKLFGALTP---LEP--------RLGKKLIEPLTNLIHRII  124 (136)
Q Consensus        71 ~------~~lvp~lv~iL~~v-~~pWlqikiLk~L~~l~~---~e~--------~~~~~l~e~l~~iL~~~~  124 (136)
                      .      ...+..++++|... .++=+|-+.+-+|..+..   .+.        ...+++.+.+.++|...+
T Consensus       689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~  760 (778)
T 3opb_A          689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD  760 (778)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred             HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence            2      24678899999875 899999888888887653   221        124678888888887764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=94.55  E-value=0.39  Score=36.70  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL   81 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i   81 (136)
                      ++.++|.+.-=-|+|-|.-.+.-+.+.+||+.++...++.-++. |...-.....-..+=.+++.+|+..++.+|-+..-
T Consensus        36 ~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfan  115 (253)
T 2db0_A           36 KLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFAN  115 (253)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHH
Confidence            34555555555577777777777777777777777766666653 33222223333333444555665555555555444


Q ss_pred             h
Q psy11028         82 M   82 (136)
Q Consensus        82 L   82 (136)
                      .
T Consensus       116 y  116 (253)
T 2db0_A          116 Y  116 (253)
T ss_dssp             S
T ss_pred             H
Confidence            3

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.47  E-value=0.52  Score=35.67  Aligned_cols=63  Identities=16%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN   67 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~   67 (136)
                      +.|+|.++++-+|.+|.-|+..++...- ......+.+...+..++|-|..+++..+..+.+..
T Consensus       108 veK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C          108 VEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999998886542 23446788889999999999999999999988764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=94.45  E-value=0.13  Score=45.99  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=87.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----   71 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----   71 (136)
                      -+..+|.|+++.||+.|+-|+..+.. +|+...      ..++.+.+++...|.++..+|...+..++..+++..     
T Consensus       627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~  705 (810)
T 3now_A          627 KIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA  705 (810)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            35678889999999999999998875 333322      245778899999999999999999999988665422     


Q ss_pred             -hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhcc
Q psy11028         72 -LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRI  123 (136)
Q Consensus        72 -~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~  123 (136)
                       ...+|.++++|.. +++=+|-.-+..+..+...+++..+.     .++.+.++++..
T Consensus       706 ~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~  762 (810)
T 3now_A          706 IASWLDILHTLIAN-PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP  762 (810)
T ss_dssp             STTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred             HcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence             2478999999986 67777777777777776555443333     345666666544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.94  E-value=0.61  Score=35.26  Aligned_cols=64  Identities=14%  Similarity=0.006  Sum_probs=50.3

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch---------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN   67 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~   67 (136)
                      +...|.|++=-.|+-|.-.+.+++...|....         ...+-+.+.+.|+|..|+..++.++..++..-
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence            34568899999999999999999987664322         13466888999999999999999999998753

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=93.84  E-value=0.11  Score=41.72  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      -..++|.+.+..+++-|+-++..+...+++...     ..++.|.++|.+.+..+.-.+...+..++..+|..|+.
T Consensus       267 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~  342 (354)
T 3nmw_A          267 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD  342 (354)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence            356788899999999999999999866665433     25899999999999999999999999999999998874

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=93.75  E-value=0.44  Score=41.04  Aligned_cols=119  Identities=11%  Similarity=0.073  Sum_probs=87.1

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhH-CCCC----ch-hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLK-FPDA----LR-PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPK---NYLS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~-~P~~----v~-~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~---~~~~   73 (136)
                      ..++|++.++.++..|+-|+..+... +++.    ++ ..++.+.++|.+ .+..+.-.+..++..++..+..   ....
T Consensus        95 LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~  174 (584)
T 3l6x_A           95 LVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDH  174 (584)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhc
Confidence            46789999999999999999988763 3432    22 368999999986 6888899999999999874321   2345


Q ss_pred             hHHHHHHHhc-----------------cCCChhHHHHHHHHhhhcCCCChHHHhh------hHHHHHHHHhc
Q psy11028         74 LAPVFFKLMT-----------------TSSNNWMLIKIIKLFGALTPLEPRLGKK------LIEPLTNLIHR  122 (136)
Q Consensus        74 lvp~lv~iL~-----------------~v~~pWlqikiLk~L~~l~~~e~~~~~~------l~e~l~~iL~~  122 (136)
                      .+|.|+++|.                 ..+++=.+...-.+|+.|+..++...+.      +++.+..+|+.
T Consensus       175 alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          175 ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            6899999772                 2345778888888999998776543333      44577777765

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.71  E-value=0.83  Score=38.87  Aligned_cols=116  Identities=13%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      ...|..+.+.-||+-|+-.+-.+++-  +.+....+.|.++|...|+..+.++-..+.++.+.+|..  .+-.-+.+|..
T Consensus        70 ~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--tl~~lf~~i~~  145 (507)
T 3u0r_A           70 QLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--TLGGLFSQILQ  145 (507)
T ss_dssp             HHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--HHHHHHHHHcc
Confidence            35677889999999999998888876  778889999999999999999999999999999999863  22333334444


Q ss_pred             cCCChhHHHHHHHHhh----hcCC--CChHHHhhhHHHHHHHHhccch
Q psy11028         84 TSSNNWMLIKIIKLFG----ALTP--LEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        84 ~v~~pWlqikiLk~L~----~l~~--~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                        +++-.--++|++++    .+++  ...+...-+.+.+..+|+..++
T Consensus       146 --~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~  191 (507)
T 3u0r_A          146 --GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG  191 (507)
T ss_dssp             --SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred             --cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence              37888888888885    2232  2245566777888888877766

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.27  E-value=0.85  Score=39.99  Aligned_cols=92  Identities=10%  Similarity=0.173  Sum_probs=68.1

Q ss_pred             CCCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH----H
Q psy11028          9 TSTKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK----L   81 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~----i   81 (136)
                      .+++|.||..|+.++-++.+   .+|+.++..++.+.+.|.|  +.|..+|..++..+++.-++.+.+..+.++.    +
T Consensus       499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~  576 (963)
T 2x19_B          499 SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV  576 (963)
T ss_dssp             CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44689999999999988765   3566677788888888865  8999999999999998777665555555554    4


Q ss_pred             hccC-CChhHHHHHHHHhhhcC
Q psy11028         82 MTTS-SNNWMLIKIIKLFGALT  102 (136)
Q Consensus        82 L~~v-~~pWlqikiLk~L~~l~  102 (136)
                      +.+. .++=.+..+++.++.+.
T Consensus       577 l~~~~~~~~~~~~~~eai~~i~  598 (963)
T 2x19_B          577 LMKQIHKTSQCMWLMQALGFLL  598 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hccCCCChHHHHHHHHHHHHHH
Confidence            4431 24566777777777654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=93.07  E-value=0.92  Score=32.67  Aligned_cols=83  Identities=8%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHH
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIK   93 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqik   93 (136)
                      ++-+--+++..|+...+.+..|++.|..+|+-|..-|+.++-.+.++=...|      +.|...+++++..-.+|-.+-|
T Consensus        36 ~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~k  115 (163)
T 1x5b_A           36 IMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEK  115 (163)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHH
Confidence            3444455666676666778889999999999999999999998888765544      3467778888876678999999


Q ss_pred             HHHHhhhcC
Q psy11028         94 IIKLFGALT  102 (136)
Q Consensus        94 iLk~L~~l~  102 (136)
                      +|.+++.-+
T Consensus       116 il~li~~W~  124 (163)
T 1x5b_A          116 LKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=92.70  E-value=1.3  Score=33.46  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHH
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIK   93 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqik   93 (136)
                      ++-+-=++...++-..+.+..|++.|..+|+-|..-|++++-.+.++-...|      +++...++++++.-+++=.+-|
T Consensus        29 ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~k  108 (226)
T 3zyq_A           29 ILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNK  108 (226)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHH
Confidence            4444445566666666788889999999999999999999988888765543      3466778888877778889999


Q ss_pred             HHHHhhhcC---CCChHHHhhhHHHHHHHH
Q psy11028         94 IIKLFGALT---PLEPRLGKKLIEPLTNLI  120 (136)
Q Consensus        94 iLk~L~~l~---~~e~~~~~~l~e~l~~iL  120 (136)
                      +|.+++..+   +.+|+.  ..+..+++-|
T Consensus       109 il~li~~W~~~f~~~~~l--~~i~~~Y~~L  136 (226)
T 3zyq_A          109 ILYLIQAWAHAFRNEPKY--KVVQDTYQIM  136 (226)
T ss_dssp             HHHHHHHHHHHTTTCGGG--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcch--HHHHHHHHHH
Confidence            999998654   355654  2334444444

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=91.84  E-value=0.24  Score=42.87  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhH-HHHHhhcCCCChhHHHHHHHHHHHHHhcC-Ccchh----
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAF-PRLKEKLEDPDSGVQSAAVNVVCELARKN-PKNYL----   72 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~-~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~~~~----   72 (136)
                      +.+.|+++++..|..|+.|+..+++ +|+.-.     ..+ .-+..+|.|++..|..+|..++-.|+... ++.+.    
T Consensus        39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~  117 (684)
T 4gmo_A           39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYR  117 (684)
T ss_dssp             HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            4567899999999999999999986 665332     244 44688899999999999999999998765 44322    


Q ss_pred             -hhHHHHHHHhc
Q psy11028         73 -SLAPVFFKLMT   83 (136)
Q Consensus        73 -~lvp~lv~iL~   83 (136)
                       ...|++.+.|+
T Consensus       118 ~~il~~L~~~l~  129 (684)
T 4gmo_A          118 LDVLTAIEHAAK  129 (684)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             cChHHHHHHHHH
Confidence             25777777766

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=91.82  E-value=1.1  Score=39.83  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP   68 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p   68 (136)
                      ...+.+..+.||.+++.|+..+.+. +|+-=+++++.+.+.+.+.|+....+++.++.++++...
T Consensus        91 l~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~  155 (960)
T 1wa5_C           91 VPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR  155 (960)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3344455699999999999999987 676566788899999988899999999999999998653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=91.71  E-value=0.31  Score=43.74  Aligned_cols=90  Identities=13%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CChHHHHHHHHHHHHH---HhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--------hhHHHHH
Q psy11028         11 TKPYLRKKAVLMMYKV---FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--------SLAPVFF   79 (136)
Q Consensus        11 s~~~VRKKA~l~~~rl---~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~--------~lvp~lv   79 (136)
                      ++|.||.+++-++-|+   +..+|+.++..++.+.+.|.|.+++|-.+|...+..+++..++.+.        ++++.+.
T Consensus       512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il  591 (1049)
T 3m1i_C          512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII  591 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence            4566666777777644   4567777777888888899999999999999999999987554432        3444444


Q ss_pred             H----HhccCCChhHHHHHHHHhhhc
Q psy11028         80 K----LMTTSSNNWMLIKIIKLFGAL  101 (136)
Q Consensus        80 ~----iL~~v~~pWlqikiLk~L~~l  101 (136)
                      +    ++... ++=-+..+++.++.+
T Consensus       592 ~~l~~~~~~~-~~~~~~~~~eai~~i  616 (1049)
T 3m1i_C          592 RDIQKTTADL-QPQQVHTFYKACGII  616 (1049)
T ss_dssp             HTHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence            3    44332 333345566666555

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.52  E-value=0.26  Score=44.91  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             CChHHHHHHHHHHHH---HHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--------hhHHHHH
Q psy11028         11 TKPYLRKKAVLMMYK---VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--------SLAPVFF   79 (136)
Q Consensus        11 s~~~VRKKA~l~~~r---l~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~--------~lvp~lv   79 (136)
                      .++.||..++.++-|   .+..+|+.++..+..+-+.+.|++++|..+|...+..+++.-.+.+.        ++++.++
T Consensus       512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il  591 (1023)
T 4hat_C          512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII  591 (1023)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Confidence            556677788777765   44568888888899999999999999999999999999886433221        2333333


Q ss_pred             H----HhccCCChhHHHHHHHHhhhcC
Q psy11028         80 K----LMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        80 ~----iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      +    +... -.+=-...+.+.++.+.
T Consensus       592 ~~l~~~~~~-l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          592 RDIQKTTAD-LQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HTHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence            3    2222 34444556666666554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.48  E-value=0.5  Score=36.89  Aligned_cols=59  Identities=12%  Similarity=0.048  Sum_probs=28.1

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK   66 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~   66 (136)
                      .-+.++++-||.++--++..++..+|.  ..+++++.+.+..+|.-+-...+..+..+...
T Consensus       139 eKlGd~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          139 LKTGEAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            334555666666655555555444321  11334444444455555555554444444443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=91.39  E-value=2.3  Score=30.02  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCCh
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNN   88 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~p   88 (136)
                      ++-+-=+++..|+...+....|++.|..+|+-|..-|+.++-.+.++=...|      +.|...+++++..     -.++
T Consensus        22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~  101 (148)
T 1mhq_A           22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG  101 (148)
T ss_dssp             HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred             HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence            3444455556665555677889999999999999999999998888866655      3567778877763     2477


Q ss_pred             hHHHHHHHHhhhcC---CCChH
Q psy11028         89 WMLIKIIKLFGALT---PLEPR  107 (136)
Q Consensus        89 WlqikiLk~L~~l~---~~e~~  107 (136)
                      =.+-|+|.+++.-+   +++|+
T Consensus       102 ~Vk~kil~li~~W~~~f~~~p~  123 (148)
T 1mhq_A          102 KVKGRVIEILFSWTVWFPEDIK  123 (148)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCch
Confidence            88889999888654   45553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=91.30  E-value=0.91  Score=36.76  Aligned_cols=98  Identities=12%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhH-----HHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF-----PRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~-----~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~~   73 (136)
                      +.+-|.+++.-.+|+|..-+.++++.+++.++.|+     ..+.+...+.+.-..+=++..+.++..+.-.     ....
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            34455677888899999999999999999998764     4577778888988898899988888664110     0224


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      ++..+++++.. .++-..=.-|++|..+.
T Consensus       203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V  230 (339)
T 3dad_A          203 TIQWLYTLCAS-LSRLVVKTALKLLLVFV  230 (339)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-ccHHHHHHHHHHHHHHH
Confidence            56666666653 33444333445554443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.19  E-value=1  Score=39.70  Aligned_cols=89  Identities=20%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             CCChHHHHHHHHHHHHHHhH---CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH----HHh
Q psy11028         10 STKPYLRKKAVLMMYKVFLK---FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF----KLM   82 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~---~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv----~iL   82 (136)
                      +++|.||..|+.++.++...   +|+.++...+.+.+.| |  +.|..+|..++..+++.-++...+..+.+.    .++
T Consensus       517 d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l  593 (971)
T 2x1g_F          517 KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASL  593 (971)
T ss_dssp             TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            35899999999999987754   4677777888888888 4  889999999999999876554444444444    444


Q ss_pred             ccC-CChhHHHHHHHHhhhc
Q psy11028         83 TTS-SNNWMLIKIIKLFGAL  101 (136)
Q Consensus        83 ~~v-~~pWlqikiLk~L~~l  101 (136)
                      .+- .+.=.+..+++.++.+
T Consensus       594 ~~~~~~~~~~~~~~~ai~~i  613 (971)
T 2x1g_F          594 NTGRMKNSDSVRLMFSIGKL  613 (971)
T ss_dssp             HSTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHHHH
Confidence            431 2456677777776655

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.06  E-value=2.8  Score=29.19  Aligned_cols=86  Identities=12%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             HHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHHH
Q psy11028         21 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIKI   94 (136)
Q Consensus        21 l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqiki   94 (136)
                      +-+-=+++..|+...+.+..+++.|..+|+.|..-|+.++-.+.++-...|      +.+...++++++. ++|=.+-|+
T Consensus        27 leicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~ki  105 (140)
T 3ldz_A           27 LDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKL  105 (140)
T ss_dssp             HHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred             HHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHH
Confidence            333444555665555677889999999999999999999877777655544      3577778888865 688899999


Q ss_pred             HHHhhhcC---CCChH
Q psy11028         95 IKLFGALT---PLEPR  107 (136)
Q Consensus        95 Lk~L~~l~---~~e~~  107 (136)
                      +.++...+   +++|.
T Consensus       106 l~li~~W~~~f~~~~~  121 (140)
T 3ldz_A          106 KALMVEWTDEFKNDPQ  121 (140)
T ss_dssp             HHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            99988665   45554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=91.01  E-value=1.2  Score=41.15  Aligned_cols=94  Identities=12%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCCChHHHHHHHHHHHHH---HhHCCCCchhhHHHHHhhcCCC------------ChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028          9 TSTKPYLRKKAVLMMYKV---FLKFPDALRPAFPRLKEKLEDP------------DSGVQSAAVNVVCELARKNPKNYLS   73 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl---~~~~P~~v~~~~~~l~~lL~D~------------d~~V~~aal~l~~~l~~~~p~~~~~   73 (136)
                      +..+|.+|.+++.|+-++   +..+|+.++...+++...+.|.            +..|-.++.+.+..+++.-|+.+.+
T Consensus       542 ~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p  621 (1204)
T 3a6p_A          542 DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP  621 (1204)
T ss_dssp             CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            457999999999987444   4568888888888888777662            3479999999999999999886666


Q ss_pred             hHHHHHH----Hhcc-C-CChhHHHHHHHHhhhcC
Q psy11028         74 LAPVFFK----LMTT-S-SNNWMLIKIIKLFGALT  102 (136)
Q Consensus        74 lvp~lv~----iL~~-v-~~pWlqikiLk~L~~l~  102 (136)
                      ..+.+..    ++.+ . -+.=-++.+...+..++
T Consensus       622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia  656 (1204)
T 3a6p_A          622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS  656 (1204)
T ss_dssp             GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence            5555554    4431 1 34666777777777664

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.96  E-value=2  Score=37.58  Aligned_cols=89  Identities=15%  Similarity=0.176  Sum_probs=57.2

Q ss_pred             CChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCC-----CChhHHHHHHHHHHHHHhcC-------------Ccch
Q psy11028         11 TKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLED-----PDSGVQSAAVNVVCELARKN-------------PKNY   71 (136)
Q Consensus        11 s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D-----~d~~V~~aal~l~~~l~~~~-------------p~~~   71 (136)
                      +.++||.|.+.|+..+.+. +|+-=+++++.+.+.+..     .++...-.++.++..+++.-             .+..
T Consensus       115 ~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l  194 (963)
T 2x19_B          115 GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL  194 (963)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence            4699999999999999876 466555677777777754     25556677777777666421             1112


Q ss_pred             hhhHHHH----HHHhccCCC-hhHHHHHHHHhh
Q psy11028         72 LSLAPVF----FKLMTTSSN-NWMLIKIIKLFG   99 (136)
Q Consensus        72 ~~lvp~l----v~iL~~v~~-pWlqikiLk~L~   99 (136)
                      ....|.+    ..++.+..+ .|+....|+.+.
T Consensus       195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~  227 (963)
T 2x19_B          195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFS  227 (963)
T ss_dssp             GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            2334444    445544333 388888888774

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.52  E-value=3.5  Score=32.02  Aligned_cols=121  Identities=8%  Similarity=0.037  Sum_probs=81.5

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHh----cCCc--ch
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELAR----KNPK--NY   71 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~----~~p~--~~   71 (136)
                      .|+...|-|++.--|-+|+-.+.+....+|+.+-.    +++.+.-.++|+|+.|+..++.++..+..    .++.  .|
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            46777888888888889999999999888876443    35666667889999999999999988743    3332  22


Q ss_pred             --hhhHHHHHHHhccC------------------CChh-HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028         72 --LSLAPVFFKLMTTS------------------SNNW-MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS  125 (136)
Q Consensus        72 --~~lvp~lv~iL~~v------------------~~pW-lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s  125 (136)
                        ..++|.++.-+...                  ..|- +--.++.   -+...+.|....+.+.+..++++...
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~---g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD---ALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH---GGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHhcCC
Confidence              35678888766532                  2222 1112222   33445577777777777777766544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=90.14  E-value=0.65  Score=42.03  Aligned_cols=74  Identities=7%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             CCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHh--hcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028         10 STKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKE--KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~--lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      +++|.||..++.++-|..+   .+|+.++...+.+.+  .+.|+++.|-.+|..++..+++.-+....+.++.++..+.
T Consensus       506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~  584 (980)
T 3ibv_A          506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLG  584 (980)
T ss_dssp             CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence            7899999999999988665   578888888888888  8889999999999999999999877655566666666554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.52  E-value=4.1  Score=33.37  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=33.1

Q ss_pred             HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028         29 KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT   83 (136)
Q Consensus        29 ~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~   83 (136)
                      ++|+++++|++.+.+.-.|++.-|--.++..+.|.+..+++.....++.+..+|.
T Consensus        56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~  110 (386)
T 3o2t_A           56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR  110 (386)
T ss_dssp             TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566666666666666666666666666666666666655555555555555554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=89.45  E-value=1.4  Score=33.99  Aligned_cols=120  Identities=11%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH-------HhcCCc------
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL-------ARKNPK------   69 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l-------~~~~p~------   69 (136)
                      ++..+-.+++..|||-.+-=+...+++.|+++....+.+..+|.|.|+.|+=.++.....+       ...+|.      
T Consensus        57 ~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~  136 (257)
T 3gs3_A           57 SVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE  136 (257)
T ss_dssp             HHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred             HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence            3444556788999999999999999999999999999999999999999987766655444       223432      


Q ss_pred             -chhh---hHHHHHHHhccCCChhHHHHHHHHhhhc----CCC--C-------------------------hHHHhhhHH
Q psy11028         70 -NYLS---LAPVFFKLMTTSSNNWMLIKIIKLFGAL----TPL--E-------------------------PRLGKKLIE  114 (136)
Q Consensus        70 -~~~~---lvp~lv~iL~~v~~pWlqikiLk~L~~l----~~~--e-------------------------~~~~~~l~e  114 (136)
                       .|..   +-..+.+++.+ .++=..+..+|+++..    .+.  +                         ..++..+.+
T Consensus       137 ~~W~~m~~lK~~Il~~~~s-~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~  215 (257)
T 3gs3_A          137 QAWNILSLIKAQILDMIDN-ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILD  215 (257)
T ss_dssp             HHHHHHHHHHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHH
Confidence             3433   23334444333 4455556666666542    111  1                         146788888


Q ss_pred             HHHHHHhcc
Q psy11028        115 PLTNLIHRI  123 (136)
Q Consensus       115 ~l~~iL~~~  123 (136)
                      .+.+.+.+.
T Consensus       216 ~LL~~~~~~  224 (257)
T 3gs3_A          216 ILLQFHGTT  224 (257)
T ss_dssp             HHHHHHTCT
T ss_pred             HHHHHHcCC
Confidence            888876654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=89.42  E-value=4.3  Score=28.74  Aligned_cols=88  Identities=16%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCCh
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNN   88 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~p   88 (136)
                      ++-+-=+++..|+.-.+....|++.|..+||-|..-|++++-.+.++=...|      +.|...+++++..     -+++
T Consensus        32 ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~  111 (149)
T 3g2s_A           32 INGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSE  111 (149)
T ss_dssp             HHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCH
T ss_pred             HHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCH
Confidence            3444445556665555678889999999999999999999988888777655      3567888888863     3577


Q ss_pred             hHHHHHHHHhhhcC---CCChH
Q psy11028         89 WMLIKIIKLFGALT---PLEPR  107 (136)
Q Consensus        89 WlqikiLk~L~~l~---~~e~~  107 (136)
                      =.+-|+|.++...+   +++|+
T Consensus       112 ~Vk~kil~li~~W~~~f~~~p~  133 (149)
T 3g2s_A          112 KVKNKILELLYSWTVGLPEEVK  133 (149)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCch
Confidence            88999999998665   45564

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=88.66  E-value=0.43  Score=36.89  Aligned_cols=68  Identities=19%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch---hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL   72 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~   72 (136)
                      +.+...+.++.||+-|+.+...... -|..-.   ..++.+..+..|++.=|--|.-+.+.++++.+|+...
T Consensus       144 ~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~  214 (240)
T 3l9t_A          144 IDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK  214 (240)
T ss_dssp             HHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence            3455688999999999988754222 233222   2678888888999999999999999999999997433

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=87.45  E-value=3.8  Score=30.48  Aligned_cols=83  Identities=12%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhccCCChhHHHH
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIK   93 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~v~~pWlqik   93 (136)
                      ++-+.=++...|+...+.+..|++.|..+|+.|..-|+.++-.+.++=...|.      ++...+++++++-+++=.+-|
T Consensus        26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~k  105 (220)
T 1dvp_A           26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQK  105 (220)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHH
Confidence            45555566667776667888899999999999999999999999887655442      367778888876667788889


Q ss_pred             HHHHhhhcC
Q psy11028         94 IIKLFGALT  102 (136)
Q Consensus        94 iLk~L~~l~  102 (136)
                      +|.+++.-+
T Consensus       106 il~li~~W~  114 (220)
T 1dvp_A          106 MLELVQTWA  114 (220)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=86.67  E-value=2.3  Score=34.90  Aligned_cols=121  Identities=18%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH-------HhcCCc------
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL-------ARKNPK------   69 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l-------~~~~p~------   69 (136)
                      ++..+-.+.+..|||-.+--+...+.+++|.+....+.+..+|.|.|++|+=.++.....+       +..+|.      
T Consensus        67 ~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e  146 (386)
T 3o2t_A           67 EIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQE  146 (386)
T ss_dssp             HHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH
Confidence            4455556788999999999999999999999988999999999999999986666544333       223332      


Q ss_pred             -chhhh---HHHHHHHhccCCChhHHHHHHHHhhhc----CC--CC---h-------------------------HHHhh
Q psy11028         70 -NYLSL---APVFFKLMTTSSNNWMLIKIIKLFGAL----TP--LE---P-------------------------RLGKK  111 (136)
Q Consensus        70 -~~~~l---vp~lv~iL~~v~~pWlqikiLk~L~~l----~~--~e---~-------------------------~~~~~  111 (136)
                       .|..+   -..+++++.+ .+.=..+..+||++..    .+  .+   |                         .++..
T Consensus       147 ~~W~~m~~lK~~Il~~~ds-~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~  225 (386)
T 3o2t_A          147 ACWDMVSAMAGDIILLLDS-DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA  225 (386)
T ss_dssp             HHHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHH
Confidence             34432   3334443322 4455556666666542    21  11   1                         36788


Q ss_pred             hHHHHHHHHhccc
Q psy11028        112 LIEPLTNLIHRII  124 (136)
Q Consensus       112 l~e~l~~iL~~~~  124 (136)
                      +.+.+.+.++...
T Consensus       226 lLd~LL~~l~~~~  238 (386)
T 3o2t_A          226 ALEQLLKFMVHPA  238 (386)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHHcccc
Confidence            8999999998653

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.55  E-value=6.8  Score=30.13  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=58.3

Q ss_pred             HhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHh
Q psy11028         27 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLF   98 (136)
Q Consensus        27 ~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L   98 (136)
                      +.++|++.+.|.+.+...-.|++.-|---.+..+.|.++.+++.....++.+..+|.+ .+|=..=+.+...
T Consensus        44 ~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~  114 (257)
T 3gs3_A           44 LGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRD-NSAQVIKRVIQAC  114 (257)
T ss_dssp             TTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred             HccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence            4568999999999999988899999999999999999999998888888888888875 5565555555443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=84.81  E-value=7.2  Score=28.09  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc-----CCCh
Q psy11028         20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SSNN   88 (136)
Q Consensus        20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~-----v~~p   88 (136)
                      ++-+--+++..++...+....|++.|..+|+-|..-|+.++-.+.++=...|.      .|...+++++..     ..++
T Consensus        34 ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~  113 (171)
T 1juq_A           34 IIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSE  113 (171)
T ss_dssp             HHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCH
T ss_pred             HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCH
Confidence            44555566667766666788899999999999999999999888887555443      467788888863     2467


Q ss_pred             hHHHHHHHHhhhcC
Q psy11028         89 WMLIKIIKLFGALT  102 (136)
Q Consensus        89 WlqikiLk~L~~l~  102 (136)
                      =.+-|+|.+++.-+
T Consensus       114 ~Vk~kil~li~~W~  127 (171)
T 1juq_A          114 KVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88889999888654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=84.26  E-value=3.9  Score=35.78  Aligned_cols=87  Identities=18%  Similarity=0.124  Sum_probs=68.0

Q ss_pred             hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh-------hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-
Q psy11028         37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS-------LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-  108 (136)
Q Consensus        37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~-------lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-  108 (136)
                      .+.-+..+|++.|+.|-..++.++..++..+|+.+.+       -+|.++.+|.. +..-++-.-+-+|..+.+.++.. 
T Consensus       123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQ  201 (651)
T 3grl_A          123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQ  201 (651)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHH
Confidence            4666888999999999999999999999999984332       38889999987 46788888888888888887653 


Q ss_pred             ----HhhhHHHHHHHHhccc
Q psy11028        109 ----GKKLIEPLTNLIHRII  124 (136)
Q Consensus       109 ----~~~l~e~l~~iL~~~~  124 (136)
                          .+...|.+-++++...
T Consensus       202 klVAFEnaFe~Lf~Ii~~Eg  221 (651)
T 3grl_A          202 KIVAFENAFERLLDIITEEG  221 (651)
T ss_dssp             HHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHhcC
Confidence                2244666777776544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=82.95  E-value=4.7  Score=36.87  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhHCCC--Cchhh----HHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhccCCChh
Q psy11028         17 KKAVLMMYKVFLKFPD--ALRPA----FPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTTSSNNW   89 (136)
Q Consensus        17 KKA~l~~~rl~~~~P~--~v~~~----~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~~v~~pW   89 (136)
                      -.|+.++..++++.+-  .+|.+    .+.+.++..|++..|-.||-.....+.+ .+|.....+.|.+++-|.. ..-|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~kw  148 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-TNKW  148 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-CCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-ccch
Confidence            6788888889877654  44543    5788888899999999999999999987 5677778899999999976 3457


Q ss_pred             -HHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhhhhhcc
Q psy11028         90 -MLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSCWTGIK  133 (136)
Q Consensus        90 -lqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv~~~~k  133 (136)
                       ..+-.|+++..|...-|.    .--.+++.+.+.+..+.+.+=-.|.|
T Consensus       149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~  197 (986)
T 2iw3_A          149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATA  197 (986)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHH
Confidence             566677888777643332    22345566666666666554444433

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=82.41  E-value=2.8  Score=37.61  Aligned_cols=92  Identities=12%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCC---------ChhHHHHHHHHHHHHHhc-CCcchhh
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDP---------DSGVQSAAVNVVCELARK-NPKNYLS   73 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~---------d~~V~~aal~l~~~l~~~-~p~~~~~   73 (136)
                      ++.++++|.-|+..+.+.++++=..++     ...+.+.+.+.+.         ++.|......++.+|++. .|+.|..
T Consensus        59 ~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~  138 (1049)
T 3m1i_C           59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE  138 (1049)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred             hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH
Confidence            467899999999999988876422222     2334455554332         467777778888888886 6899999


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~  102 (136)
                      +++.++..+.  +++-.....+.+|+.++
T Consensus       139 ll~~L~~~~~--~~~~~~~~~l~~L~~l~  165 (1049)
T 3m1i_C          139 FIPELIGSSS--SSVNVCENNMIVLKLLS  165 (1049)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence            9999999986  35433334444444443

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=82.10  E-value=11  Score=26.59  Aligned_cols=82  Identities=7%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             HHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh------hhHHH-HHHHhcc--CCChhH
Q psy11028         21 LMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL------SLAPV-FFKLMTT--SSNNWM   90 (136)
Q Consensus        21 l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~-lv~iL~~--v~~pWl   90 (136)
                      +-+--+++..++...+.+..|++.|. ..|+-|..-|+.++-.+.++-...|.      ++... +++++..  -+.+-.
T Consensus        38 leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~V  117 (157)
T 1elk_A           38 MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIV  117 (157)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHH
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHH
Confidence            44445566666666677888999997 58999999999999998888766554      35666 6777742  244577


Q ss_pred             HHHHHHHhhhcC
Q psy11028         91 LIKIIKLFGALT  102 (136)
Q Consensus        91 qikiLk~L~~l~  102 (136)
                      +-|+|.+++.-+
T Consensus       118 k~kil~li~~W~  129 (157)
T 1elk_A          118 HDKVLNLIQSWA  129 (157)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            889998887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-17
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-14
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	0.003
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 8e-04
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 15/130 (11%)

Query: 8   LTSTKPYLRKKAVLMMYKVFLKF-----PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 62
           +TS+    R  A   +     K       D+ R     + + LED +  VQ+ AV  +  
Sbjct: 12  MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGP 71

Query: 63  LARKNPKNYL-SLAPVFFKLMTTSSNN---------WMLIKIIKLFGALTPLEPRLGKKL 112
           L  K  +  + ++       M +               +I  +    + + L   + KK+
Sbjct: 72  LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 113 IEPLTNLIHR 122
              LT+ I +
Sbjct: 132 TGRLTSAIAK 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.81
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.76
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.15
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.1
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.95
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.77
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.71
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.57
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.41
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.3
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.24
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.23
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.17
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.04
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.02
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.31
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.19
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.17
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.06
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.02
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.86
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.21
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.52
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.63
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.45
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.06
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	89.87
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.37
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	85.79
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	84.32
d1t06a_	235	Hypothetical protein BC3264 {Bacillus cereus (stra	82.8

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.1e-06  Score=61.62  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch---h-
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---L-   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~---~-   72 (136)
                      +...++|++++|.+|..|+-++..++..+++.=.     ..++.+.++|.++++.|..+++..+..++..+++.-   . 
T Consensus         5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~   84 (457)
T d1xm9a1           5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5678999999999999999999999988776432     357999999999999999999999999998877532   2 


Q ss_pred             -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh
Q psy11028         73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP  106 (136)
Q Consensus        73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~  106 (136)
                       .-++.+++++....++..+.....+|..+...+.
T Consensus        85 ~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~  119 (457)
T d1xm9a1          85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE  119 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh
Confidence             2489999999988899999999999999986554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=6e-06  Score=59.50  Aligned_cols=117  Identities=9%  Similarity=-0.038  Sum_probs=83.2

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      ++.++|++++|.||+.|+.++.++-.      +..++.+.+++.|+|+.|-..++..+..+...... -....+.+...+
T Consensus        23 ~L~~~L~d~~~~vR~~A~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~l~~~~   95 (276)
T d1oyza_          23 ELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDNVFNILNNMA   95 (276)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccchHHHHHHHH
Confidence            57789999999999999999876521      34567888899999999988888777665332221 122344555555


Q ss_pred             ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchh
Q psy11028         83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL  126 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~  126 (136)
                      .+-++|+.....+..|..++..++....++.+.+...++.....
T Consensus        96 l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~  139 (276)
T d1oyza_          96 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTN  139 (276)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHH
T ss_pred             hcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchH
Confidence            55588888888888888887766655667777777776665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=8.5e-06  Score=60.20  Aligned_cols=126  Identities=18%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhh----
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLS----   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~----   73 (136)
                      +..+++++++.||..|+.++..+.+.+|..-.     ..++.+.++|. |.++.|...++..+..++..++.....    
T Consensus        64 l~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~  143 (264)
T d1xqra1          64 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL  143 (264)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHh
Confidence            34678999999999999999999999886432     36788999995 789999999999999999988864432    


Q ss_pred             -hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhhhhh
Q psy11028         74 -LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLSCWT  130 (136)
Q Consensus        74 -lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~sv~~  130 (136)
                       -++.+++.|+. +++=++.+.+..+..+...++..     .....+.+.++|++.++...-.
T Consensus       144 ~gi~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~  205 (264)
T d1xqra1         144 DGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEH  205 (264)
T ss_dssp             THHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHH
T ss_pred             hhhhHHHHHHhc-CchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHH
Confidence             48889999987 68889999999999886544332     2235788888888776654433

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=0.00011  Score=52.46  Aligned_cols=115  Identities=10%  Similarity=0.002  Sum_probs=80.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK   80 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~   80 (136)
                      -+.+++++++++||..|+.++.++-..  ...++  ...-+..+++|+|+.|-.+++..+..++..++.....+++.+..
T Consensus        54 ~l~~~l~d~~~~vr~~a~~aL~~l~~~--~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~  131 (276)
T d1oyza_          54 LAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQI  131 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhccc--cccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHH
Confidence            356788999999999999998876332  22222  22345566789999999999999999999888777777888887


Q ss_pred             HhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchh
Q psy11028         81 LMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL  126 (136)
Q Consensus        81 iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~  126 (136)
                      .+.. ++++.+......++..+...      ..+.+...+...+..
T Consensus       132 ~~~d-~~~~vr~~a~~~l~~~~~~~------~~~~l~~l~~~~~~~  170 (276)
T d1oyza_         132 TAFD-KSTNVRRATAFAISVINDKA------TIPLLINLLKDPNGD  170 (276)
T ss_dssp             HTTC-SCHHHHHHHHHHHHTC---C------CHHHHHHHHTCSSHH
T ss_pred             HhcC-cchHHHHHHHHHHhhcchHH------HHHHHHHhcccccch
Confidence            7766 67888877777777665432      233444444444443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=5.9e-06  Score=53.72  Aligned_cols=106  Identities=11%  Similarity=0.191  Sum_probs=75.5

Q ss_pred             cCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCC
Q psy11028          8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSN   87 (136)
Q Consensus         8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~   87 (136)
                      |++.+++||+.|+.++-++   .++    .++.+.++|.|.|+.|-.+++..+-++   .   ....+|.+...|+. ++
T Consensus         1 L~D~~~~VR~~A~~aL~~~---~~~----~~~~L~~~l~d~~~~vR~~a~~~L~~~---~---~~~~~~~L~~~l~d-~~   66 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM---GDE----AFEPLLESLSNEDWRIRGAAAWIIGNF---Q---DERAVEPLIKLLED-DS   66 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC---SST----THHHHHHGGGCSCHHHHHHHHHHHGGG---C---SHHHHHHHHHHHHH-CC
T ss_pred             CCCcCHHHHHHHHHHHHHh---CHH----HHHHHHHHHcCCCHHHHHHHHHHHHhc---c---hhhhHHHHHhhhcc-ch
Confidence            5788888988888886543   232    455677888899999888777665432   1   12467888888876 78


Q ss_pred             hhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcc
Q psy11028         88 NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIK  133 (136)
Q Consensus        88 pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k  133 (136)
                      |+.....++.|+.++..      +..+.+.+.++..+..+--.+++
T Consensus        67 ~~VR~~a~~aL~~i~~~------~~~~~L~~ll~d~~~~vr~~A~~  106 (111)
T d1te4a_          67 GFVRSGAARSLEQIGGE------RVRAAMEKLAETGTGFARKVAVN  106 (111)
T ss_dssp             THHHHHHHHHHHHHCSH------HHHHHHHHHTTSCCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcc------chHHHHHHHHcCCCHHHHHHHHH
Confidence            99999999988888653      56777778888777766554443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0002  Score=52.49  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=86.7

Q ss_pred             hhhhcC-CCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028          4 YFIYLT-STKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----   72 (136)
Q Consensus         4 V~klL~-~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----   72 (136)
                      +.++++ ++++-+|++|+.|+..+.+.+|+....     .++.+.++|.+.|+.+...++.++..++..+|+...     
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            455664 578999999999999999998865432     578899999999999999999999999998886433     


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL  108 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~  108 (136)
                      ..+|.++++|+. ++|=.|...+..|..+..+.+..
T Consensus       186 ~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~  220 (264)
T d1xqra1         186 GMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQG  220 (264)
T ss_dssp             THHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCHHH
Confidence            358999999976 78889999999999998776543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=0.00034  Score=44.85  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM   82 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL   82 (136)
                      .+.++|++.++.||..|+.|+-.+..      +..++.+.++|.|+|+.|-.+++..+-.+.   +   ....|.+..++
T Consensus        26 ~L~~~l~d~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---~---~~~~~~L~~ll   93 (111)
T d1te4a_          26 PLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---G---ERVRAAMEKLA   93 (111)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---S---HHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcch------hhhHHHHHhhhccchhHHHHHHHHHHHHhC---c---cchHHHHHHHH
Confidence            35678899999999999999865431      235788899999999999999988877652   1   24677777777


Q ss_pred             ccCCChhHHHHHHHHhhh
Q psy11028         83 TTSSNNWMLIKIIKLFGA  100 (136)
Q Consensus        83 ~~v~~pWlqikiLk~L~~  100 (136)
                      .+ ++|+.+-..++.|..
T Consensus        94 ~d-~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          94 ET-GTGFARKVAVNYLET  110 (111)
T ss_dssp             TS-CCTHHHHHHHHHGGG
T ss_pred             cC-CCHHHHHHHHHHHHc
Confidence            66 789998888877754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00013  Score=57.58  Aligned_cols=125  Identities=10%  Similarity=0.107  Sum_probs=93.4

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCC---c--hhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCc--chh-
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA---L--RPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPK--NYL-   72 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~---v--~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~--~~~-   72 (136)
                      +...++|++.++.+|++|+.++..+-..++..   +  .+.++.+.++|.+ .|+.+.-.++..+..++.+.+.  .+. 
T Consensus        20 p~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~   99 (529)
T d1jdha_          20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK   99 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            45778999999999999999999987654432   2  2367888888865 5788888899999998764432  121 


Q ss_pred             -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhh
Q psy11028         73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~s  127 (136)
                       ..+|.++++|++ ++|..|......|..++.+++..     ....++.+.++|++.+..+
T Consensus       100 ~g~i~~Li~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~  159 (529)
T d1jdha_         100 SGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF  159 (529)
T ss_dssp             TTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHH
T ss_pred             CCCHHHHHHHhCC-CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHH
Confidence             358999999987 89999999999999887544332     2235678888887766543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00081  Score=53.32  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=87.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCC-CCch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc--hhhhHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFP-DALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN--YLSLAPVFF   79 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~--~~~lvp~lv   79 (136)
                      +.+++++.+|.||+.|+.++..+.+..+ +... .+.+.+.+++.|++.+|-.+++..+..++...+..  ...+.|.+.
T Consensus       169 ~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~  248 (588)
T d1b3ua_         169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR  248 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence            4567899999999999999999988754 3332 46788899999999999999999999998876543  234677777


Q ss_pred             HHhccCCChhHHHHHHHHhhhcCC--CChHHHhhhHHHHHHHHhccchhh
Q psy11028         80 KLMTTSSNNWMLIKIIKLFGALTP--LEPRLGKKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        80 ~iL~~v~~pWlqikiLk~L~~l~~--~e~~~~~~l~e~l~~iL~~~~s~s  127 (136)
                      +.+.+ ++++.+....+.|..+..  +.......+.+.+...++..++.+
T Consensus       249 ~~~~D-~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~v  297 (588)
T d1b3ua_         249 QAAED-KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV  297 (588)
T ss_dssp             HHHTC-SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred             Hhccc-ccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHH
Confidence            77765 566666666666655542  111223456777777776666543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.0011  Score=50.17  Aligned_cols=122  Identities=14%  Similarity=0.138  Sum_probs=93.6

Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCC-----ch-hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcch---
Q psy11028          2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-----LR-PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNY---   71 (136)
Q Consensus         2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-----v~-~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~---   71 (136)
                      .++.+.|++.++..+..|+-++.++...+.+-     ++ +.++.+.++|.+. ++.|...++..+..++..+++.-   
T Consensus        16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i   95 (434)
T d1q1sc_          16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV   95 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHh
Confidence            46788999999999999999999998665542     22 3688999999754 67888889999999988776432   


Q ss_pred             --hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccc
Q psy11028         72 --LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRII  124 (136)
Q Consensus        72 --~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~  124 (136)
                        ...+|.+++.|.+ +++-.+-..+.+|..++.+++...+     ...+.+..++...+
T Consensus        96 ~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~  154 (434)
T d1q1sc_          96 VDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD  154 (434)
T ss_dssp             HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred             hhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcc
Confidence              2469999999976 7889999999999999877665333     44556777665543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.0044  Score=48.21  Aligned_cols=122  Identities=12%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~   73 (136)
                      +.+++++.++.+++.|+.++..+++..+...     ...++.+.+++.+.|+.+...++..+..++..+++...     .
T Consensus       209 L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  288 (503)
T d1wa5b_         209 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR  288 (503)
T ss_dssp             HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             chhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhh
Confidence            4678889999999999999999987654432     24678899999999999999999999999987765432     4


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISL  126 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~  126 (136)
                      .++.++.++.. +++..+...+++++.+...++....     .+.+.+..++++.+..
T Consensus       289 ~~~~l~~ll~~-~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~  345 (503)
T d1wa5b_         289 IPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN  345 (503)
T ss_dssp             CHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred             hhhhhhhcccC-CchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHH
Confidence            67888888876 7899999999999999877654433     3456777777766554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0018  Score=48.77  Aligned_cols=128  Identities=10%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~   73 (136)
                      ..++++++++.++..|+.|+..+....++...     ..++.+.+++.+.++.+..+++..+..++..+++..     ..
T Consensus       193 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~  272 (434)
T d1q1sc_         193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG  272 (434)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhcc
Confidence            34678899999999999999999877665433     368999999999999999999999999988776532     23


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhhhhhhc
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLSCWTGI  132 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~sv~~~~  132 (136)
                      ..+.++++|.. +++=.+.....++..+...++..     ...+.+.+.+.+.+.+......++
T Consensus       273 ~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~  335 (434)
T d1q1sc_         273 ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  335 (434)
T ss_dssp             GGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHH
T ss_pred             ccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHH
Confidence            56778888876 67778888888888887655432     244677888888777765554443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.0032  Score=49.03  Aligned_cols=123  Identities=16%  Similarity=0.093  Sum_probs=97.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S   73 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~   73 (136)
                      +.+++.++++.++.-|+.|+.++....++....     ..+.+..++.+.++.+...++..+..++..++....     .
T Consensus       251 l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~  330 (503)
T d1wa5b_         251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG  330 (503)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence            457788999999999999999999887775542     578899999999999999999999999877654322     3


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhh
Q psy11028         74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLS  127 (136)
Q Consensus        74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~s  127 (136)
                      +++.+..++.. +++..+...+.++..+...++...     ..+++.+.+.+.+.+..+
T Consensus       331 ~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v  388 (503)
T d1wa5b_         331 VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT  388 (503)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhH
Confidence            57788888866 799999999999999987766543     445677777777666544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0023  Score=47.04  Aligned_cols=89  Identities=11%  Similarity=0.048  Sum_probs=70.8

Q ss_pred             hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh
Q psy11028         37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK  111 (136)
Q Consensus        37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~  111 (136)
                      .+|.+.++|.++|+.|...+...+..+|..|++...     .-+|.++++|+. ++|=.|...+..|..+...++...+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            368899999999999999999999999988876433     348999999976 78999999999999998776654444


Q ss_pred             h-----HHHHHHHHhccchh
Q psy11028        112 L-----IEPLTNLIHRIISL  126 (136)
Q Consensus       112 l-----~e~l~~iL~~~~s~  126 (136)
                      +     ++.+...+.+....
T Consensus        82 i~~~g~v~~li~~l~~~~~~  101 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNA  101 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCH
T ss_pred             HHHCCChHHHHHHHhccCcH
Confidence            4     56677767654443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.024  Score=44.02  Aligned_cols=126  Identities=11%  Similarity=0.060  Sum_probs=90.2

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc---h--h
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---Y--L   72 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~---~--~   72 (136)
                      -+.++|+++++-+++.|+-++..+....++.-.     ..++.+.++|.+.++.+...+...+..++..+++.   .  .
T Consensus       105 ~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  184 (529)
T d1jdha_         105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            456788999999999999999999988876422     36899999999999999999999999998776532   1  2


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhh
Q psy11028         73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSC  128 (136)
Q Consensus        73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv  128 (136)
                      ..++.++++|...+++=++.....++..++..+..    ......+.+...++..+....
T Consensus       185 ~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T d1jdha_         185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred             ccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhh
Confidence            34889999998766666666777777777643211    112234555555555444333

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.012  Score=49.09  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=75.4

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh---
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL---   74 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l---   74 (136)
                      .+...+++++|.||..|+-|+-|+....++..     ...++.+.+.+.|+++.|-.++...+..+++.-.+...+.   
T Consensus       440 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~  519 (888)
T d1qbkb_         440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY  519 (888)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            45677899999999999999999887543322     2356778888899999999999999998887554433334   


Q ss_pred             -HHHHHHHhccCCChhHHHHHHHHhhhcCC------CChHHHhhhHHHHHHHHh
Q psy11028         75 -APVFFKLMTTSSNNWMLIKIIKLFGALTP------LEPRLGKKLIEPLTNLIH  121 (136)
Q Consensus        75 -vp~lv~iL~~v~~pWlqikiLk~L~~l~~------~e~~~~~~l~e~l~~iL~  121 (136)
                       .+.+...+.. ....-..-++..++.+..      .++...+.+.+.+.+..+
T Consensus       520 il~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  572 (888)
T d1qbkb_         520 ILDTLVFAFSK-YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN  572 (888)
T ss_dssp             HHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence             4444444443 333333344444444421      223344445555544444

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.021  Score=44.82  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=25.1

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHH
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELA   64 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~   64 (136)
                      .+++++++.||+.|+.++..+....++-  .....+.+.+++.|++..|-.++...+..++
T Consensus       210 ~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~  270 (588)
T d1b3ua_         210 NLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ  270 (588)
T ss_dssp             HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred             HHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHH
Confidence            3444444444444444444444443321  1123344444444444444444444444443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.015  Score=48.42  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhH----
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA----   75 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lv----   75 (136)
                      +.+++++.++.||+.|..++-.+.+..++.+..    +.+.+.+.|+|.+++|..+++.++-+++..-++.+.+.+    
T Consensus       670 l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il  749 (888)
T d1qbkb_         670 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL  749 (888)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            456778999999999999988888888776543    667788888999999999999999999998877666554    


Q ss_pred             HHHHHHhc
Q psy11028         76 PVFFKLMT   83 (136)
Q Consensus        76 p~lv~iL~   83 (136)
                      +.++++|.
T Consensus       750 ~~L~~il~  757 (888)
T d1qbkb_         750 HQLVEIIN  757 (888)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            44555555

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0038  Score=53.09  Aligned_cols=110  Identities=18%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch----hhhHHHHHHH
Q psy11028          6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAPVFFKL   81 (136)
Q Consensus         6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~----~~lvp~lv~i   81 (136)
                      +.+.+.+..+|.-++-|+-|+...+|+   .+++.+.+.+.|+|+.+-.+++..+..+....+..+    +.++|.+.+.
T Consensus       935 ~~~~~~~~~vr~~~a~~lg~L~~~~~~---~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~ 1011 (1207)
T d1u6gc_         935 KHCECAEEGTRNVVAECLGKLTLIDPE---TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT 1011 (1207)
T ss_dssp             TCCCCSSTTHHHHHHHHHHHHHHSSGG---GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            345667888999999999999988874   467889999999999999999999988888777644    4567777777


Q ss_pred             hccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHH
Q psy11028         82 MTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNL  119 (136)
Q Consensus        82 L~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~i  119 (136)
                      |++ +++...-..+..|..+....|.+....++.+.+.
T Consensus      1012 l~d-~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~ 1048 (1207)
T d1u6gc_        1012 LED-PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPH 1048 (1207)
T ss_dssp             HSS-SSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred             hCC-CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            766 7999888888888887766665544444444433

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0026  Score=54.14  Aligned_cols=80  Identities=23%  Similarity=0.296  Sum_probs=65.5

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHH
Q psy11028          3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVF   78 (136)
Q Consensus         3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~l   78 (136)
                      .+.++++++++.+|..|+.++..++...|+...+    +++.+.+.|.|+|+.|-.+|+..+..++++.|+..+++.+.+
T Consensus       966 ~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~l 1045 (1207)
T d1u6gc_         966 RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045 (1207)
T ss_dssp             HHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            4567789999999999999998888888876554    456677788999999999999999999999998776665555


Q ss_pred             HHHh
Q psy11028         79 FKLM   82 (136)
Q Consensus        79 v~iL   82 (136)
                      ...|
T Consensus      1046 lp~l 1049 (1207)
T d1u6gc_        1046 LPHL 1049 (1207)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.077  Score=42.16  Aligned_cols=67  Identities=12%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHhH-CCC-CchhhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcch
Q psy11028          5 FIYLTSTKPYLRKKAVLMMYKVFLK-FPD-ALRPAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNY   71 (136)
Q Consensus         5 ~klL~~s~~~VRKKA~l~~~rl~~~-~P~-~v~~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~   71 (136)
                      .+.|.++++.||+.|+.|+.++.+. .|+ --+++++.+.+.+.+. +..+..+++.++..+++..+..+
T Consensus       101 l~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~  170 (861)
T d2bpta1         101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS  170 (861)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            4567889999999999999999986 454 3455777787777654 45677788888999988655433

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.023  Score=42.00  Aligned_cols=92  Identities=17%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCC-chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcch----hhhHHHHHHHhc
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDA-LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNY----LSLAPVFFKLMT   83 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~-v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~----~~lvp~lv~iL~   83 (136)
                      +.+..+|+-|..++..+....++- ++.+.+.+.+.+.|+|+.+--|++.++..+++. .++.+    .+++|.++..+.
T Consensus       338 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~  417 (458)
T d1ibrb_         338 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK  417 (458)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred             cccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhC
Confidence            455679999999999999988865 456789999999999999999999998888753 23333    346777777776


Q ss_pred             cCCChhHHHHHHHHhhhcC
Q psy11028         84 TSSNNWMLIKIIKLFGALT  102 (136)
Q Consensus        84 ~v~~pWlqikiLk~L~~l~  102 (136)
                      + ++|.++..-+..|+.++
T Consensus       418 d-~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         418 D-PSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             C-SCHHHHHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHHH
Confidence            6 89999988888887664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.035  Score=40.96  Aligned_cols=78  Identities=18%  Similarity=0.148  Sum_probs=58.8

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhH-CCCC----chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--chhhhHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLK-FPDA----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--NYLSLAP   76 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~-~P~~----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--~~~~lvp   76 (136)
                      +...++++++.+|.-|+.++.-+... .++.    ++..++.+.+.+.|+++.|-.+|+..+-.+++.-|+  .....+|
T Consensus       370 i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~  449 (458)
T d1ibrb_         370 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA  449 (458)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence            45778999999999999998877653 2333    445788999999999999999999999998876543  2334455


Q ss_pred             HHHHH
Q psy11028         77 VFFKL   81 (136)
Q Consensus        77 ~lv~i   81 (136)
                      +++..
T Consensus       450 ~ll~~  454 (458)
T d1ibrb_         450 PLLQC  454 (458)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.061  Score=42.78  Aligned_cols=93  Identities=11%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             CCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHH----HHH
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV----FFK   80 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~----lv~   80 (136)
                      ++++..+|.-|..++..+....++-...    +++.+.+.|.|.++.|..+++.++.++++..++.+.+.++.    +.+
T Consensus       608 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~  687 (861)
T d2bpta1         608 KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ  687 (861)
T ss_dssp             STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHH
Confidence            4566788999999998888877765543    57888888999999999999999999999887766555444    444


Q ss_pred             HhccC-CChhHHHHHHHHhhhc
Q psy11028         81 LMTTS-SNNWMLIKIIKLFGAL  101 (136)
Q Consensus        81 iL~~v-~~pWlqikiLk~L~~l  101 (136)
                      .|++- .++-....++..|+.+
T Consensus       688 ~l~~~~~~~~~k~~~~~~l~~i  709 (861)
T d2bpta1         688 MISNPNARRELKPAVLSVFGDI  709 (861)
T ss_dssp             HHHCTTCCTTHHHHHHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHH
Confidence            55432 2233334455555543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.33  Score=39.54  Aligned_cols=120  Identities=12%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCC-----------Cchh----hHHHHHhhcCCCChh-----HHHHHHHHHHHH
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD-----------ALRP----AFPRLKEKLEDPDSG-----VQSAAVNVVCEL   63 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~-----------~v~~----~~~~l~~lL~D~d~~-----V~~aal~l~~~l   63 (136)
                      +.++|+++++.||-.|+.|+.+++....+           .+.+    .++.+...+.+.+..     +....+..+..+
T Consensus       501 l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~i  580 (959)
T d1wa5c_         501 LATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV  580 (959)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHH
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHH
Confidence            45778899999999999999999874332           2222    334444444333221     112234444444


Q ss_pred             HhcCCcchh----hhHHHHHHHhc----cCCChhHHHHHHHHhhhcCC-CC----hHHHhhhHHHHHHHHhcc
Q psy11028         64 ARKNPKNYL----SLAPVFFKLMT----TSSNNWMLIKIIKLFGALTP-LE----PRLGKKLIEPLTNLIHRI  123 (136)
Q Consensus        64 ~~~~p~~~~----~lvp~lv~iL~----~v~~pWlqikiLk~L~~l~~-~e----~~~~~~l~e~l~~iL~~~  123 (136)
                      .+..++.+.    .+++.+..++.    +..+|...-.+++.++.+.. ..    +...+.+.+.+..+++..
T Consensus       581 i~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~  653 (959)
T d1wa5c_         581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED  653 (959)
T ss_dssp             HHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc
Confidence            444443333    34455555443    34568888888887776632 11    234455566666655543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.57  Score=31.39  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CC
Q psy11028         18 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SS   86 (136)
Q Consensus        18 KA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~   86 (136)
                      .+++-+-=++...|+...+....+++.|.++|+-|..-|+.++-.+.++=...|      +.|...++++++.     -.
T Consensus        27 ~~ileicD~I~~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~  106 (145)
T d1ujka_          27 ASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRT  106 (145)
T ss_dssp             HHHHHHHHHHTSSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGS
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCC
Confidence            345555556666777666778889999999999999999999977777644444      3567778888863     24


Q ss_pred             ChhHHHHHHHHhhhcC
Q psy11028         87 NNWMLIKIIKLFGALT  102 (136)
Q Consensus        87 ~pWlqikiLk~L~~l~  102 (136)
                      ++=.+-|++.+++.-+
T Consensus       107 ~~~Vk~kil~li~~W~  122 (145)
T d1ujka_         107 SEKVKNKILELLYSWT  122 (145)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            5567778999988754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.06  E-value=1.2  Score=35.99  Aligned_cols=57  Identities=18%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             CCCChHHHHHHHHHHHHHHhHCC-CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028          9 TSTKPYLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR   65 (136)
Q Consensus         9 ~~s~~~VRKKA~l~~~rl~~~~P-~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~   65 (136)
                      ++..+.+|.+|+.++.++....+ +..+.+.+.+.+.|.|.++.|...|...+..++.
T Consensus       468 ~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~  525 (959)
T d1wa5c_         468 NIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (959)
T ss_dssp             SCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence            44678999999999999887643 4455678889999999999999999888888876

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.98  E-value=0.83  Score=30.40  Aligned_cols=83  Identities=12%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHH
Q psy11028         19 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLI   92 (136)
Q Consensus        19 A~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqi   92 (136)
                      +++.+--+++..|+...+....|++.|.++||-|..-|+.++-.+.++-...|      +++...+.++++.-+++=.+-
T Consensus        25 ~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~  104 (145)
T d1dvpa1          25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQ  104 (145)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHH
Confidence            44555566677788777888999999999999999999999988887754433      246677777776656777888


Q ss_pred             HHHHHhhhc
Q psy11028         93 KIIKLFGAL  101 (136)
Q Consensus        93 kiLk~L~~l  101 (136)
                      |++.+++..
T Consensus       105 kil~li~~W  113 (145)
T d1dvpa1         105 KMLELVQTW  113 (145)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            899988874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.27  Score=39.10  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             hhhhcC-CCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCC--ChhHHHHHHHHHHHHHhcCCcchhhhHH
Q psy11028          4 YFIYLT-STKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDP--DSGVQSAAVNVVCELARKNPKNYLSLAP   76 (136)
Q Consensus         4 V~klL~-~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~--d~~V~~aal~l~~~l~~~~p~~~~~lvp   76 (136)
                      +.+.|+ ..++-+|+.|+-++-.+.+..++.+.+    +.+.+.+.|.|.  +..|-.+++.++.+++..-++.|.++++
T Consensus       654 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~  733 (876)
T d1qgra_         654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE  733 (876)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            344554 455779999999999999888887765    456666677664  5788899999999998887777888877


Q ss_pred             HHHHHhc
Q psy11028         77 VFFKLMT   83 (136)
Q Consensus        77 ~lv~iL~   83 (136)
                      .+..+|.
T Consensus       734 ~~l~~l~  740 (876)
T d1qgra_         734 VVLNTLQ  740 (876)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777665

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.92  Score=35.86  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             CCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcchhhh----HHHHHH
Q psy11028         10 STKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNYLSL----APVFFK   80 (136)
Q Consensus        10 ~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~~~l----vp~lv~   80 (136)
                      ..+..++..|..++..+....++...    .+++.+.+.|.+. ++.|-.+++.++.++....++.+.+.    .+.+++
T Consensus       619 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~  698 (876)
T d1qgra_         619 AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE  698 (876)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHH
Confidence            35678999999999998887776544    3567777777654 58899999999999988777665544    445555


Q ss_pred             HhccCC-ChhHHHHHHHHhh
Q psy11028         81 LMTTSS-NNWMLIKIIKLFG   99 (136)
Q Consensus        81 iL~~v~-~pWlqikiLk~L~   99 (136)
                      .|.+.. ++=....++.+++
T Consensus       699 ~l~~~~~~~~~k~~~~~~i~  718 (876)
T d1qgra_         699 NLGNENVHRSVKPQILSVFG  718 (876)
T ss_dssp             HHTCTTSCGGGHHHHHHHHH
T ss_pred             HhCCccCCHHHHHHHHHHHH
Confidence            554321 2223344444443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=3.3  Score=27.23  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCC
Q psy11028         19 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSN   87 (136)
Q Consensus        19 A~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~   87 (136)
                      +++-+--++...|+...+....|++.|.+++|-|..-|+.++-.+.++=...|      ++|...+++++..     ..+
T Consensus        21 ~il~icD~I~~~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~  100 (143)
T d1mhqa_          21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT  100 (143)
T ss_dssp             HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC
Confidence            44555556666777655677889999999999999999999988888765544      2456667777652     356


Q ss_pred             hhHHHHHHHHhhhcC---CCChH
Q psy11028         88 NWMLIKIIKLFGALT---PLEPR  107 (136)
Q Consensus        88 pWlqikiLk~L~~l~---~~e~~  107 (136)
                      +=.+-|+|.+++..+   +++|.
T Consensus       101 ~~Vk~kil~li~~Wa~~f~~~~~  123 (143)
T d1mhqa_         101 GKVKGRVIEILFSWTVWFPEDIK  123 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCch
Confidence            778889999988654   45553

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=3.5  Score=27.40  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCC
Q psy11028         19 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSN   87 (136)
Q Consensus        19 A~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~   87 (136)
                      +++-+-=++...|+...+.+..+++.|...|+-|+.-|+.++-.+.++=...|      ++|...+++++..     ...
T Consensus        22 ~ileicD~In~~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~  101 (151)
T d1juqa_          22 YIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVS  101 (151)
T ss_dssp             HHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCccc
Confidence            34444555666777666778889999999999999999999988888754433      2467778887763     245


Q ss_pred             hhHHHHHHHHhhhcCC
Q psy11028         88 NWMLIKIIKLFGALTP  103 (136)
Q Consensus        88 pWlqikiLk~L~~l~~  103 (136)
                      +=.+-|+|.+++..+.
T Consensus       102 ~~Vk~kil~ll~~Wa~  117 (151)
T d1juqa_         102 EKVKTKVIELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6688899999987654

>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein BC3264
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=82.80  E-value=1.9  Score=30.80  Aligned_cols=71  Identities=10%  Similarity=-0.023  Sum_probs=57.3

Q ss_pred             hhhhcCCCChHHHHHHHHHHHHHHhHCCCC------chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q psy11028          4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA------LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL   74 (136)
Q Consensus         4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~------v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l   74 (136)
                      +.+...|.++++|+-|..++..++...|+-      ++.+.+.+.+.+.|...-|--|.--.+.++..++|+.-...
T Consensus       113 ~~~W~~S~~~w~rRag~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~i~d~~~~v~kAv~W~Lr~ig~~~~~l~~~a  189 (235)
T d1t06a_         113 ADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKA  189 (235)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhccChHHHHHH
Confidence            345668999999999999999999876542      23456777788999999999999999999999999754443