Psyllid ID: psy11059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEcccccccEEEccccccccccccccccEEccccccEEEEEcccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccEEcccccccEEEEcccccccccccccEEEEccccEEEEcccccccccccccccccccccccccccEEcccccccccccEEEEccccccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEccccccccccccccccccccEEEccEEEcccccccccccccccccccccccccccEEccccccEEEEccccccccccccccccEEccccccEEEEccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccEEEccccccEEEEcccccccccccccEEEcccccEEEEcccccccccccccccHcccccccccccEEEccccccccccEEEEccccccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
myfkpislsspcdaqrnpcqnggkcnedetgnydctcdaLHTVCCVglanqtlgsihcetpisnqicttappclngatcrpqlteqlyecvcppgykeirdctsnpclndgvcvwMFDVTIQVYKgrycelpeigdcssnpclndgvcvdvykgrycelpeigdcssnpclndgvcvdvykgrywelpeirdctsnpclndgvcvdevykgrywelpeirdctsnpclndcvnpcqnggkcnedetgnydctcdalhtgdpckhgscvdkragyfcdcpptyggkncsveltgcvgpdtclnggtckpylvdetqhrfnctcpsgyhgkicekcfcrpgfagdhcdvdfdeclsnpcfngatcqnkingytcvcapgysgkecsininecesspclhgatcidevatfscvcpkgltgrlcetniddce
Flexible Loop (DISEMBL)
myfkpislsspcdaqrnPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPeigdcssnpclNDGVCVDVYKGRYCELpeigdcssnpclnDGVCVDVYKGRYWELpeirdctsnpclndgVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPkgltgrlcetniddce
Low Complexity Region (SEG)
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE
Disordered region (IsUnstruct)
*****************************TGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI****
Disordered Region (DISOPRED)
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC*
Disordered Region (DISEMBL)
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE
Disordered Region (DISPRO)
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI**CE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
P10079	1064	Fibropellin-1 OS=Strongyl	no	N/A	0.878	0.354	0.342	6e-51
Q01705	2531	Neurogenic locus notch ho	yes	N/A	0.944	0.160	0.314	2e-48
P46530	2437	Neurogenic locus notch ho	no	N/A	0.944	0.166	0.311	3e-48
Q07008	2531	Neurogenic locus notch ho	yes	N/A	0.944	0.160	0.314	7e-48
P21783	2524	Neurogenic locus notch pr	N/A	N/A	0.895	0.152	0.336	2e-47
P10040	2146	Protein crumbs OS=Drosoph	yes	N/A	0.892	0.178	0.332	5e-47
P46531	2555	Neurogenic locus notch ho	yes	N/A	0.944	0.158	0.310	7e-47
P07207	2703	Neurogenic locus Notch pr	no	N/A	0.790	0.125	0.349	1e-46
Q9QW30	2471	Neurogenic locus notch ho	no	N/A	0.906	0.157	0.337	7e-46
O35516	2470	Neurogenic locus notch ho	no	N/A	0.909	0.157	0.334	2e-45

>sp|P10079|FBP1_STRPU Fibropellin-1 OS=Strongylocentrotus purpuratus GN=EGF1 PE=1 SV=2

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 167/487 (34%), Positives = 224/487 (45%), Gaps = 110/487 (22%)

Query: 18  PCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGA 77
           PCQNG  C +   G + CTC A +T             + CET I+      + PCLNG 
Sbjct: 450 PCQNGAVCVDGVNG-FVCTCSAGYT------------GVLCETDINE---CASMPCLNGG 493

Query: 78  TCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTIQVYKGR 127
            C   +    Y C C  G++      +  +C S PC N   C    +      +  Y G 
Sbjct: 494 VCTDLVNG--YICTCAAGFEGTNCETDTDECASFPCQNGATCTDQVNGYVCTCVPGYTGV 551

Query: 128 YCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPE----------IGDCSSNPCLNDGVCV 177
            CE  +I +C+S PCLN G C D   G  C   +            +C+S PCLN G C+
Sbjct: 552 LCET-DINECASFPCLNGGTCNDQVNGYVCVCAQDTSVSTCETDRDECASAPCLNGGACM 610

Query: 178 DVYKGRY------WELP--EIR--DCTSNPCLNDGVCVDEVYKGRYWELP---------E 218
           DV  G        WE    EI   +C S+PC+N G+CVD+V     + LP         E
Sbjct: 611 DVVNGFVCTCLPGWEGTNCEINTDECASSPCMNGGLCVDQVNSYVCFCLPGFTGIHCGTE 670

Query: 219 IRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKHGS 266
           I +C S+PCLN        GG+C  D   +Y+C C A +T              PC++G 
Sbjct: 671 IDECASSPCLN--------GGQC-IDRVDSYECVCAAGYTAVRCQINIDECASAPCQNGG 721

Query: 267 -CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG 325
            CVD   GY C+C P Y G NC  E+  C     CLNGG C      E  + + C C +G
Sbjct: 722 VCVDGVNGYVCNCAPGYTGDNCETEIDECASM-PCLNGGACI-----EMVNGYTCQCVAG 775

Query: 326 YHGKICEK------------------------CFCRPGFAGDHCDVDFDECLSNPCFNGA 361
           Y G ICE                         C C PGF G +C+ + DEC S+PC NG 
Sbjct: 776 YTGVICETDIDECASAPCQNGGVCTDTINGYICACVPGFTGSNCETNIDECASDPCLNGG 835

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
            C + +NG+ C C P YSG  C I+++ C S PC +GATC++  A + C C  G  G+ C
Sbjct: 836 ICVDGVNGFVCQCPPNYSGTYCEISLDACRSMPCQNGATCVNVGADYVCECVPGYAGQNC 895

Query: 422 ETNIDDC 428
           E +I++C
Sbjct: 896 EIDINEC 902

Forms the apical lamina, a component of the extracellular matrix.
Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1 PE=1 SV=3

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 239/547 (43%), Gaps = 142/547 (25%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTC--------------DALHTVCCVGLA-NQTLGSI 56
           C    N CQNGG C+ +  G Y+C C              D     C  G   +  + S 
Sbjct: 299 CQLMPNACQNGGTCH-NTHGGYNCVCVNGWTGEDCSENIDDCASAACFQGATCHDRVASF 357

Query: 57  HCETPIS--------NQICTTAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDC 102
           +CE P          N  C + P C  G+ C          C CP GY      +++ +C
Sbjct: 358 YCECPHGRTGLLCHLNDACISNP-CNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDEC 416

Query: 103 T--SNPCLNDGVCVWMFDVT----IQVYKGRYCELPEIGDCSSNPCLNDGVCVDV----- 151
              +NPC + G C+          +Q Y G  CE+ ++ +C SNPC ND  C+D      
Sbjct: 417 ALGANPCEHAGKCLNTLGSFECQCLQGYTGPRCEI-DVNECISNPCQNDATCLDQIGEFQ 475

Query: 152 ------YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----------EIRDCTS 195
                 Y+G YCE+    +C+S+PCL++G C+D       + P          ++ +C S
Sbjct: 476 CICMPGYEGVYCEI-NTDECASSPCLHNGHCMDKINEFQCQCPKGFNGHLCQYDVDECAS 534

Query: 196 NPCLNDGVCVD----------EVYKGRYWELPEIRDCTSNPC------------------ 227
            PC N   C+D          E Y G + E+ +I +C  +PC                  
Sbjct: 535 TPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV-DIDECDPDPCHYGSCKDGVATFTCLCQP 593

Query: 228 ----------LNDC-VNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKH 264
                     +N+C   PC++GG C +D   +Y C C    TG            +PC  
Sbjct: 594 GYTGHHCETNINECHSQPCRHGGTC-QDRDNSYLCLCLKGTTGPNCEINLDDCASNPCDS 652

Query: 265 GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPS 324
           G+C+DK  GY C C P Y G  C+V +  C G   C NGGTC+  +       F C CP 
Sbjct: 653 GTCLDKIDGYECACEPGYTGSMCNVNIDECAG-SPCHNGGTCEDGIAG-----FTCRCPE 706

Query: 325 GYHGKIC-----------------------EKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
           GYH   C                        KC C PG++G +CD++ +EC SNPC NG 
Sbjct: 707 GYHDPTCLSEVNECNSNPCIHGACRDGLNGYKCDCAPGWSGTNCDINNNECESNPCVNGG 766

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
           TC++  +GY C C  G+SG  C  NINEC S+PCL+  TCID+VA + C CP   TG  C
Sbjct: 767 TCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCPLPYTGATC 826

Query: 422 ETNIDDC 428
           E  +  C
Sbjct: 827 EVVLAPC 833

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. May be involved in mesoderm development, somite formation and neurogenesis. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. Important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, functions as a receptor for neuronal DNER and is involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Mus musculus (taxid: 10090)

>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a PE=2 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 241/546 (44%), Gaps = 141/546 (25%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTC--------------DALHTVCCVGLA-NQTLGSI 56
           C+   N CQNGG C+ +  G + C C              D     C  G   +  + S 
Sbjct: 298 CELSPNACQNGGTCH-NTIGGFHCVCVNGWTGDDCSENIDDCASAACSHGATCHDRVASF 356

Query: 57  HCETP--ISNQICT-----TAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDCT 103
            CE P   +  +C       + PC  G+ C          C CPPGY      ++I +C+
Sbjct: 357 FCECPHGRTGLLCHLDDACISNPCQKGSNCDTNPVSGKAICTCPPGYTGSACNQDIDECS 416

Query: 104 --SNPCLNDGVCVWMFDVT----IQVYKGRYCELPEIGDCSSNPCLNDGVCVDV------ 151
             +NPC + G C+          +Q Y+G  CE+ ++ +C SNPC ND  C+D       
Sbjct: 417 LGANPCEHGGRCLNTKGSFQCKCLQGYEGPRCEM-DVNECKSNPCQNDATCLDQIGGFHC 475

Query: 152 -----YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----------EIRDCTSN 196
                Y+G +C++    DC+S PCLN G C+D     + E P          ++ +C S 
Sbjct: 476 ICMPGYEGVFCQI-NSDDCASQPCLN-GKCIDKINSFHCECPKGFSGSLCQVDVDECAST 533

Query: 197 PCLNDGVCVD----------EVYKGRYWELPEIRDCTSNPC------------------- 227
           PC N   C D            + G + EL +I +C S+PC                   
Sbjct: 534 PCKNGAKCTDGPNKYTCECTPGFSGIHCEL-DINECASSPCHYGVCRDGVASFTCDCRPG 592

Query: 228 ---------LNDCVN-PCQNGGKCNEDETGNYDCTCDALHTG------------DPCKHG 265
                    +N+C++ PC+NGG C + E   Y CTC    TG             PC +G
Sbjct: 593 YTGRLCETNINECLSQPCRNGGTCQDRENA-YICTCPKGTTGVNCEINIDDCKRKPCDYG 651

Query: 266 SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG 325
            C+DK  GY C C P Y G  C++ +  C   + C NGGTC    +D   + F C CP G
Sbjct: 652 KCIDKINGYECVCEPGYSGSMCNINIDDCA-LNPCHNGGTC----IDGV-NSFTCLCPDG 705

Query: 326 YHGKIC-----------------------EKCFCRPGFAGDHCDVDFDECLSNPCFNGAT 362
           +    C                        +C C  G+ G +CD++ +ECLSNPC NG T
Sbjct: 706 FRDATCLSQHNECSSNPCIHGSCLDQINSYRCVCEAGWMGRNCDININECLSNPCVNGGT 765

Query: 363 CQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           C++  +GY C C  G+SG  C +NINEC S+PCL+  +CID+VA F C C    TG +CE
Sbjct: 766 CKDMTSGYLCTCRAGFSGPNCQMNINECASNPCLNQGSCIDDVAGFKCNCMLPYTGEVCE 825

Query: 423 TNIDDC 428
             +  C
Sbjct: 826 NVLAPC 831

Implicated in cell fate specifications during embryo development. May be involved in the formation of the neural plate, notochord and brain vesicles.

Danio rerio (taxid: 7955)

>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=Rattus norvegicus GN=Notch1 PE=2 SV=2

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 236/547 (43%), Gaps = 142/547 (25%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTC--------------DALHTVCCVGLA-NQTLGSI 56
           C    N CQN G C+    G Y+C C              D     C  G   +  + S 
Sbjct: 299 CQLMPNACQNAGTCHNSH-GGYNCVCVNGWTGEDCSDNIDDCASAACFQGATCHDRVASF 357

Query: 57  HCETPIS--------NQICTTAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDC 102
           +CE P          N  C + P C  G+ C          C CP GY      +++ +C
Sbjct: 358 YCECPHGRTGLLCHLNDACISNP-CNEGSNCDTNPVNGKAICTCPRGYTGPACSQDVDEC 416

Query: 103 T--SNPCLNDGVCVWMFDVT----IQVYKGRYCELPEIGDCSSNPCLNDGVCVDV----- 151
              +NPC + G C+          +Q Y G  CE+ ++ +C SNPC ND  C+D      
Sbjct: 417 ALGANPCEHAGKCLNTLGSFECQCLQGYTGPRCEI-DVNECISNPCQNDATCLDQIGEFQ 475

Query: 152 ------YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----------EIRDCTS 195
                 Y+G YCE+    +C+S+PCL++G CVD       + P          ++ +C S
Sbjct: 476 CICMPGYEGVYCEI-NTDECASSPCLHNGRCVDKINEFLCQCPKGFSGHLCQYDVDECAS 534

Query: 196 NPCLNDGVCVD----------EVYKGRYWELPEIRDCTSNPC------------------ 227
            PC N   C+D          E Y G + E+ +I +C  +PC                  
Sbjct: 535 TPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV-DIDECDPDPCHIGLCKDGVATFTCLCQP 593

Query: 228 ----------LNDC-VNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKH 264
                     +N+C   PC++GG C +D    Y C C    TG            +PC  
Sbjct: 594 GYTGHHCETNINECHSQPCRHGGTC-QDRDNYYLCLCLKGTTGPNCEINLDDCASNPCDS 652

Query: 265 GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPS 324
           G+C+DK  GY C C P Y G  C+V +  C G   C NGGTC+  +       F C CP 
Sbjct: 653 GTCLDKIDGYECACEPGYTGSMCNVNIDECAG-SPCHNGGTCEDGIAG-----FTCRCPE 706

Query: 325 GYHGKIC-----------------------EKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
           GYH   C                        KC C PG++G +CD++ +EC SNPC NG 
Sbjct: 707 GYHDPTCLSEVNECNSNPCIHGACRDGLNGYKCDCAPGWSGTNCDINNNECESNPCVNGG 766

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
           TC++  +GY C C  G+SG  C  NINEC S+PCL+  TCID+VA + C CP   TG  C
Sbjct: 767 TCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCPLPYTGATC 826

Query: 422 ETNIDDC 428
           E  +  C
Sbjct: 827 EVVLAPC 833

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May be important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, may function as a receptor for neuronal DNER and may be involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A (By similarity). Acts instructively to control the cell fate determination of CNS multipotent progenitor cells, resulting in astroglial induction and neuron/oligodendrocyte suppression.

Rattus norvegicus (taxid: 10116)

>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=Xenopus laevis GN=notch1 PE=1 SV=3

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 228/482 (47%), Gaps = 98/482 (20%)

Query: 18   PCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGA 77
            PC NGG+C + E G Y CTC    T             ++CET I +     +  C NG 
Sbjct: 610  PCLNGGQCTDRENG-YICTCPKGTT------------GVNCETKIDD---CASNLCDNGK 653

Query: 78   TCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTIQVYKGR 127
             C  ++    YEC C PGY        I +C SNPC N G C    +    V    Y   
Sbjct: 654  -CIDKIDG--YECTCEPGYTGKLCNININECDSNPCRNGGTCKDQINGFTCVCPDGYHDH 710

Query: 128  YCELPEIGDCSSNPCLN----DGV------CVDVYKGRYCELPEIGDCSSNPCLNDGVCV 177
             C L E+ +C+SNPC++    DGV      C   + G  C++    +C SNPC+N G C 
Sbjct: 711  MC-LSEVNECNSNPCIHGACHDGVNGYKCDCEAGWSGSNCDINN-NECESNPCMNGGTCK 768

Query: 178  DVYKGRY-------WELPE----IRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNP 226
            D+  G Y       +  P     I +C+SNPCLN G C+D+V   +   +          
Sbjct: 769  DM-TGAYICTCKAGFSGPNCQTNINECSSNPCLNHGTCIDDVAGYKCNCMLPYTGAICEA 827

Query: 227  CLNDCV-NPCQNGGKCNEDET-GNYDCTCDALHTGD------------PCKHGS-CVDKR 271
             L  C  +PC+NGG+C E E    + C C     G             PC++G+ C +  
Sbjct: 828  VLAPCAGSPCKNGGRCKESEDFETFSCECPPGWQGQTCEIDMNECVNRPCRNGATCQNTN 887

Query: 272  AGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 331
              Y C+C P Y G+NC +++  C  P+ C NGG+C   +     + F C CP+G+ G  C
Sbjct: 888  GSYKCNCKPGYTGRNCEMDIDDCQ-PNPCHNGGSCSDGI-----NMFFCNCPAGFRGPKC 941

Query: 332  EK------------------------CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKI 367
            E+                        C C+PGF+G HC+ +  +C  + CFNG TC + I
Sbjct: 942  EEDINECASNPCKNGANCTDCVNSYTCTCQPGFSGIHCESNTPDCTESSCFNGGTCIDGI 1001

Query: 368  NGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
            N +TC C PG++G  C  +INEC+S PCL+G TC D   T+ C CP+G TG  C+  +  
Sbjct: 1002 NTFTCQCPPGFTGSYCQHDINECDSKPCLNGGTCQDSYGTYKCTCPQGYTGLNCQNLVRW 1061

Query: 428  CE 429
            C+
Sbjct: 1062 CD 1063

Xenopus laevis (taxid: 8355)

>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3

 Score =  189 bits (479), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 212/496 (42%), Gaps = 113/496 (22%)

Query: 10  SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTT 69
           SPC   +NPC+NGG C E+  G+Y C CD  H+              HCET ++      
Sbjct: 306 SPC--AKNPCENGGSCLENSRGDYQCFCDPNHS------------GQHCETEVNIHPLCQ 351

Query: 70  APPCLNGATCRPQLTEQLYECVCPPGYKEIR------DCTSNPCLNDGVCV-----WMFD 118
             PCLN   C          C CP GY   R      +C S PC N+G C+     +  D
Sbjct: 352 TNPCLNNGACVVIGGSGALTCECPKGYAGARCEVDTDECASQPCQNNGSCIDRINGFSCD 411

Query: 119 VTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYK-----------GRYCELPEIGDCSS 167
            +   Y G +C+   + +C  NPCLN G C D Y            G  C+ P    C +
Sbjct: 412 CSGTGYTGAFCQT-NVDECDKNPCLNGGRCFDTYGWYTCQCLDGWGGEICDRPMT--CQT 468

Query: 168 NPCLNDGVCVDVYKGRY--------WELPEIRDCTSNPCLND-----GVCVDEVYKGRYW 214
             CLN G C+D   G           EL +I    +  C  D     G CV +     Y 
Sbjct: 469 QQCLNGGTCLDKPIGFQCLCPPEYTGELCQIAPSCAQQCPIDSECVGGKCVCKPGSSGYN 528

Query: 215 ELPEIRDCTSNPCL-----NDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGS--- 266
                 D  S   L     N     C NGG C+ + T    C C   ++GD C+      
Sbjct: 529 CQTSTGDGASALALTPINCNATNGKCLNGGTCSMNGT---HCYCAVGYSGDRCEKAENCS 585

Query: 267 ---------CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
                    CV  +    C CP       C+ +         C NGG C    VD     
Sbjct: 586 PLNCQEPMVCVQNQ----CLCPENKVCNQCATQ--------PCQNGGEC----VDLPNGD 629

Query: 318 FNCTCPSGYHGKIC-------------------------EKCFCRPGFAGDHCDVDFDEC 352
           + C C  G+ G+ C                          KC+C PGF G HCD D DEC
Sbjct: 630 YECKCTRGWTGRTCGNDVDECTLHPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDEC 689

Query: 353 LSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVC 412
           LS PC NGATC NKIN Y CVC PGY G+ C ++I+EC S+PC +G+TCID +  F+C C
Sbjct: 690 LSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNC 749

Query: 413 PKGLTGRLCETNIDDC 428
             G+TGR+C+ +IDDC
Sbjct: 750 IPGMTGRICDIDIDDC 765

Plays a central role in cell polarity establishment. Participates in the assembly, positioning and maintenance of adherens junctions via its interaction with the SAC complex. Controls the coalescence of the spots of zonula adherens (ZA) into a adhesive ring around the cells. It may act as a signal. Involved in morphogenesis of the photoreceptor rhabdomere, for positioning and growth of rhabdomere and AJ during the crucial period of photoreceptor extension along the proximodistal axis of the retina.

Drosophila melanogaster (taxid: 7227)

>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4

 Score =  188 bits (477), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 170/547 (31%), Positives = 240/547 (43%), Gaps = 142/547 (25%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTC--------------DALHTVCCVGLA-NQTLGSI 56
           C    N CQNGG C+ +  G Y+C C              D     C  G   +  + S 
Sbjct: 299 CQLMPNACQNGGTCH-NTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASF 357

Query: 57  HCETPIS--------NQICTTAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDC 102
           +CE P          N  C + P C  G+ C          C CP GY      +++ +C
Sbjct: 358 YCECPHGRTGLLCHLNDACISNP-CNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDEC 416

Query: 103 T--SNPCLNDGVCVWMFDVT----IQVYKGRYCELPEIGDCSSNPCLNDGVCVDV----- 151
           +  +NPC + G C+          +Q Y G  CE+ ++ +C SNPC ND  C+D      
Sbjct: 417 SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI-DVNECVSNPCQNDATCLDQIGEFQ 475

Query: 152 ------YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----------EIRDCTS 195
                 Y+G +CE+    +C+S+PCL++G C+D       E P          ++ +C S
Sbjct: 476 CICMPGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECAS 534

Query: 196 NPCLNDGVCVD----------EVYKGRYWELPEIRDCTSNPC------------------ 227
            PC N   C+D          E Y G + E+ +I +C  +PC                  
Sbjct: 535 TPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV-DIDECDPDPCHYGSCKDGVATFTCLCRP 593

Query: 228 ----------LNDCVN-PCQNGGKCNEDETGNYDCTCDALHTG------------DPCKH 264
                     +N+C + PC++GG C +D    Y C C    TG             PC  
Sbjct: 594 GYTGHHCETNINECSSQPCRHGGTC-QDRDNAYLCFCLKGTTGPNCEINLDDCASSPCDS 652

Query: 265 GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPS 324
           G+C+DK  GY C C P Y G  C++ +  C G + C NGGTC+  +     + F C CP 
Sbjct: 653 GTCLDKIDGYECACEPGYTGSMCNINIDECAG-NPCHNGGTCEDGI-----NGFTCRCPE 706

Query: 325 GYHGKIC-----------------------EKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
           GYH   C                        KC C PG++G +CD++ +EC SNPC NG 
Sbjct: 707 GYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGG 766

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
           TC++  +GY C C  G+SG  C  NINEC S+PCL+  TCID+VA + C C    TG  C
Sbjct: 767 TCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATC 826

Query: 422 ETNIDDC 428
           E  +  C
Sbjct: 827 EVVLAPC 833

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May be important for normal lymphocyte function. In altered form, may contribute to transformation or progression in some T-cell neoplasms. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. May be important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, may function as a receptor for neuronal DNER and may be involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Homo sapiens (taxid: 9606)

>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1 SV=3

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 203/441 (46%), Gaps = 102/441 (23%)

Query: 69  TAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSN--------PCLNDGVCVWMFDVT 120
           T+ PC   A C        Y C C  GYK + DC+ +        PC ++G+CV      
Sbjct: 414 TSNPCHADAICDTSPINGSYACSCATGYKGV-DCSEDIDECDQGSPCEHNGICVNTPGSY 472

Query: 121 ----IQVYKGRYCELPEIGDCSSNPCLNDGVCVD-----------VYKGRYCELPEIGDC 165
                Q + G  CE   I +C S+PC N+G C+D            + G  CE+ +I +C
Sbjct: 473 RCNCSQGFTGPRCET-NINECESHPCQNEGSCLDDPGTFRCVCMPGFTGTQCEI-DIDEC 530

Query: 166 SSNPCLNDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVDEV------ 208
            SNPCLNDG C D            + G   ++  I DC S PC N G+C D +      
Sbjct: 531 QSNPCLNDGTCHDKINGFKCSCALGFTGARCQI-NIDDCQSQPCRNRGICHDSIAGYSCE 589

Query: 209 ----YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTG----- 259
               Y G   E+  I DC SNPC         + GKC  D+  ++ C CD  +TG     
Sbjct: 590 CPPGYTGTSCEI-NINDCDSNPC---------HRGKC-IDDVNSFKCLCDPGYTGYICQK 638

Query: 260 -------DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLV 311
                  +PC+  G C D+   Y+C C     GKNC V +  C   + C NG TC   + 
Sbjct: 639 QINECESNPCQFDGHCQDRVGSYYCQCQAGTSGKNCEVNVNECHS-NPCNNGATCIDGI- 696

Query: 312 DETQHRFNCTCPSGYHGKICEK------------------------CFCRPGFAGDHCDV 347
               + + C C  G+ G+ CEK                        C C  GF   HC  
Sbjct: 697 ----NSYKCQCVPGFTGQHCEKNVDECISSPCANNGVCIDQVNGYKCECPRGFYDAHCLS 752

Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVAT 407
           D DEC SNPC N   C++ IN + C C PGY+GK C ++I+EC S+PC HG TC D++  
Sbjct: 753 DVDECASNPCVNEGRCEDGINEFICHCPPGYTGKRCELDIDECSSNPCQHGGTCYDKLNA 812

Query: 408 FSCVCPKGLTGRLCETNIDDC 428
           FSC C  G TG+ CETNIDDC
Sbjct: 813 FSCQCMPGYTGQKCETNIDDC 833

Signaling protein, which regulates, with both positive and negative signals, the differentiation of at least central and peripheral nervous system and eye, wing disk, oogenesis, segmental appendages such as antennae and legs, and muscles, through lateral inhibition or induction. Functions as a receptor for membrane-bound ligands Delta and Serrate to regulate cell-fate determination. Upon ligand activation, and releasing from the cell membrane, the Notch intracellular domain (NICD) forms a transcriptional activator complex with Su(H) (Suppressor of hairless) and activates genes of the E(spl) complex. Essential for proper differentiation of ectoderm. Fringe (fng) acts in the Golgi to determine the type of O-linked fucose on the EGF modules in N, altering the ability of N to bind with Delta (Dl). O-fut1 also has a role in modulating the interaction. Rumi acts in the endoplasmic reticulum to glucosylate the EGF modules in N, this is required for correct folding and cleavage of N.

Drosophila melanogaster (taxid: 7227)

>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus GN=Notch2 PE=1 SV=1

 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 218/489 (44%), Gaps = 100/489 (20%)

Query: 17   NPCQNGGKCNEDETGNYDCTC-------------DALHTVCCVG----LANQTLGSIHCE 59
            NPCQNGG CN    G Y CTC             D   +  C+     L + +  + HC 
Sbjct: 764  NPCQNGGTCNNLVNG-YRCTCKKGFKGYNCQVNIDECASNPCLNQGTCLDDVSGYTCHCM 822

Query: 60   TPISNQICTT--AP----PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPC 107
             P + + C T  AP    PC N A C+     + + C+C PG++      ++ +C S PC
Sbjct: 823  LPYTGKNCQTVLAPCSPNPCENAAVCKEAPNFESFTCLCAPGWQGQRCTVDVDECVSKPC 882

Query: 108  LNDGVCVWMFDVTI----QVYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------Y 152
            +N+G+C       +      + G  CE  +I DC +NPC N G CVD            +
Sbjct: 883  MNNGICHNTQGSYMCECPPGFSGMDCE-EDINDCLANPCQNGGSCVDKVNTFSCLCLPGF 941

Query: 153  KGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPE----------IRDCTSNPCLNDG 202
             G  C+  ++ +C S PC N G C D         P           I +CT + C N G
Sbjct: 942  VGDKCQT-DMNECLSEPCKNGGTCSDYVNSYTCTCPAGFHGVHCENNIDECTESSCFNGG 1000

Query: 203  VCVDEV----------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
             CVD +          + G +  L +I +C+SNPCLN         G C  D  G Y CT
Sbjct: 1001 TCVDGINSFSCLCPVGFTGPFC-LHDINECSSNPCLNS--------GTC-VDGLGTYRCT 1050

Query: 253  CDALHTG------------DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDT 299
            C   +TG             PCK+ G+C  ++A   C CPP + G  C V    C     
Sbjct: 1051 CPLGYTGKNCQTLVNLCSPSPCKNKGTCAQEKARPRCLCPPGWDGAYCDVLNVSCKA--A 1108

Query: 300  CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
             L  G    +L    QH   C      H      C C  G+ G +C+   DEC SNPC +
Sbjct: 1109 ALQKGVPVEHLC---QHSGICINAGNTH-----HCQCPLGYTGSYCEEQLDECASNPCQH 1160

Query: 360  GATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGR 419
            GATC + I GY C C PGY G  C   ++EC++ PC +G TCID V  F C CP G  G 
Sbjct: 1161 GATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGL 1220

Query: 420  LCETNIDDC 428
            LCE NIDDC
Sbjct: 1221 LCEENIDDC 1229

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation.

Rattus norvegicus (taxid: 10116)

>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2 PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 215/488 (44%), Gaps = 98/488 (20%)

Query: 17   NPCQNGGKCNEDETGNYDCTC-------------DALHTVCCVG----LANQTLGSIHCE 59
            NPCQNGG CN    G Y CTC             D   +  C+       + +  + HC 
Sbjct: 762  NPCQNGGTCNNLVNG-YRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDVSGYTCHCM 820

Query: 60   TPISNQICTT--AP----PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPC 107
             P + + C T  AP    PC N A C+     + + C+C PG++      ++ +C S PC
Sbjct: 821  LPYTGKNCQTVLAPCSPNPCENAAVCKEAPNFESFSCLCAPGWQGKRCTVDVDECISKPC 880

Query: 108  LNDGVCVWMFDVTI----QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCE----- 158
            +N+GVC       +      + G  CE  +I DC +NPC N G CVD      C+     
Sbjct: 881  MNNGVCHNTQGSYVCECPPGFSGMDCE-EDINDCLANPCQNGGSCVDHVNTFSCQCHPGF 939

Query: 159  -----LPEIGDCSSNPCLNDGVCVDVYKGRYWELPE----------IRDCTSNPCLNDGV 203
                   ++ +C S PC N G C D         P           I +CT + C N G 
Sbjct: 940  IGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCTCPAGFHGVHCENNIDECTESSCFNGGT 999

Query: 204  CVDEV----------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTC 253
            CVD +          + G +  L +I +C+SNPCLN         G C  D  G Y C C
Sbjct: 1000 CVDGINSFSCLCPVGFTGPFC-LHDINECSSNPCLN--------AGTC-VDGLGTYRCIC 1049

Query: 254  DALHTG------------DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTC 300
               +TG             PCK+ G+CV ++A   C CPP + G  C V    C      
Sbjct: 1050 PLGYTGKNCQTLVNLCSRSPCKNKGTCVQEKARPHCLCPPGWDGAYCDVLNVSCKA--AA 1107

Query: 301  LNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNG 360
            L  G    +L    QH   C      H      C C  G+ G +C+   DEC SNPC +G
Sbjct: 1108 LQKGVPVEHLC---QHSGICINAGNTH-----HCQCPLGYTGSYCEEQLDECASNPCQHG 1159

Query: 361  ATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRL 420
            ATC + I GY C C PGY G  C   ++EC++ PC +G TCID V  F C CP G  G L
Sbjct: 1160 ATCNDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLL 1219

Query: 421  CETNIDDC 428
            CE NID+C
Sbjct: 1220 CEENIDEC 1227

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
328709397	2180	PREDICTED: protein crumbs-like isoform 3	0.888	0.174	0.377	2e-57
328709399	2180	PREDICTED: protein crumbs-like isoform 4	0.888	0.174	0.377	2e-57
340386674	599	PREDICTED: neurogenic locus notch protei	0.902	0.646	0.359	7e-57
260833680	1668	hypothetical protein BRAFLDRAFT_123361 [	0.855	0.220	0.371	7e-56
340382857	1067	PREDICTED: neurogenic locus notch homolo	0.902	0.362	0.361	1e-55
270002371	2162	hypothetical protein TcasGA2_TC004424 [T	0.927	0.184	0.315	2e-55
380013994	2055	PREDICTED: LOW QUALITY PROTEIN: protein	0.913	0.190	0.323	2e-55
91076648	2134	PREDICTED: similar to crumbs CG6383-PA [	0.927	0.186	0.315	2e-55
390335924	1017	PREDICTED: fibropellin-1-like [Strongylo	0.902	0.380	0.367	3e-54
328709395	2304	PREDICTED: protein crumbs-like isoform 2	0.890	0.165	0.345	3e-54

>gi|328709397|ref|XP_003243947.1| PREDICTED: protein crumbs-like isoform 3 [Acyrthosiphon pisum]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 187/496 (37%), Positives = 242/496 (48%), Gaps = 115/496 (23%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
           +PCQ+GG C  D   NY C C           +      I+CET I+        PC N 
Sbjct: 321 SPCQHGGVC-IDGVNNYTCAC-----------SKTGYKGINCETNINE---CEINPCSNQ 365

Query: 77  ATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVC---VWMFDVTIQV-YKG 126
             C        Y C C  G+       E+ +C SNPC N G C   V  ++    + + G
Sbjct: 366 GICFDNYGS--YTCQCQSGFGGINCDIELNECVSNPCQNGGQCRDQVGTYECRCALGFIG 423

Query: 127 RYCELPEIGDCSSNPCLNDGVCVDVY-------KGRYCELP----EIGDCSSNPCLNDGV 175
           R CE+  + DC S  C  + +CVD         K  Y  +P    EI  CSS+PC N G 
Sbjct: 424 RNCEI-NVDDCESAVCPTNSICVDGVASYSCHCKSGYTGVPPNCSEITVCSSHPCQNGGS 482

Query: 176 CVDV------------YKGRYWELPEIRDCTSNPCLNDGVCVDEV----------YKGRY 213
           C  +            Y G+  ++ +I +C S PCLN G+C D +          Y G Y
Sbjct: 483 CGLLPNGQFNCSCSLGYTGQTCQI-DIDECMSKPCLNGGICHDLINGFRCNCTDNYMGAY 541

Query: 214 WELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETG--NYDCTCDALHTG-------DPCKH 264
            +LP    CT NP      +PC N G C    +   +Y C C     G       D CK 
Sbjct: 542 CQLP-FDACTKNP------SPCLNNGTCLHKTSSLKDYYCKCSPGFEGKNCEGNIDECKT 594

Query: 265 GSC------VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
           G+C      +D    Y C+CP  Y G+NCS  L  C   + C N  TC      E    +
Sbjct: 595 GTCPVGKVCIDGINTYECECPEGYTGENCSKILNDCR-DNLCKNNSTCI-----EDVDGY 648

Query: 319 NCTCPSGYHGKICEK-------------------------CFCRPGFAGDHCDVDFDECL 353
            C C SG+ G  C++                         CFCRPGF+GD+CDVDFDECL
Sbjct: 649 TCRCMSGFTGMHCDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECL 708

Query: 354 SNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCP 413
           S PC++GATC+NKING+ C+C PGY+GK CSI+INEC S+PCL+GATCID +A+F+C CP
Sbjct: 709 SQPCYHGATCENKINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCP 768

Query: 414 KGLTGRLCETNIDDCE 429
            G+ G+LCETNIDDCE
Sbjct: 769 PGIVGKLCETNIDDCE 784

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709399|ref|XP_003243948.1| PREDICTED: protein crumbs-like isoform 4 [Acyrthosiphon pisum]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 187/496 (37%), Positives = 242/496 (48%), Gaps = 115/496 (23%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
           +PCQ+GG C  D   NY C C           +      I+CET I+        PC N 
Sbjct: 321 SPCQHGGVC-IDGVNNYTCAC-----------SKTGYKGINCETNINE---CEINPCSNQ 365

Query: 77  ATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVC---VWMFDVTIQV-YKG 126
             C        Y C C  G+       E+ +C SNPC N G C   V  ++    + + G
Sbjct: 366 GICFDNYGS--YTCQCQSGFGGINCDIELNECVSNPCQNGGQCRDQVGTYECRCALGFIG 423

Query: 127 RYCELPEIGDCSSNPCLNDGVCVDVY-------KGRYCELP----EIGDCSSNPCLNDGV 175
           R CE+  + DC S  C  + +CVD         K  Y  +P    EI  CSS+PC N G 
Sbjct: 424 RNCEI-NVDDCESAVCPTNSICVDGVASYSCHCKSGYTGVPPNCSEITVCSSHPCQNGGS 482

Query: 176 CVDV------------YKGRYWELPEIRDCTSNPCLNDGVCVDEV----------YKGRY 213
           C  +            Y G+  ++ +I +C S PCLN G+C D +          Y G Y
Sbjct: 483 CGLLPNGQFNCSCSLGYTGQTCQI-DIDECMSKPCLNGGICHDLINGFRCNCTDNYMGAY 541

Query: 214 WELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETG--NYDCTCDALHTG-------DPCKH 264
            +LP    CT NP      +PC N G C    +   +Y C C     G       D CK 
Sbjct: 542 CQLP-FDACTKNP------SPCLNNGTCLHKTSSLKDYYCKCSPGFEGKNCEGNIDECKT 594

Query: 265 GSC------VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
           G+C      +D    Y C+CP  Y G+NCS  L  C   + C N  TC      E    +
Sbjct: 595 GTCPVGKVCIDGINTYECECPEGYTGENCSKILNDCR-DNLCKNNSTCI-----EDVDGY 648

Query: 319 NCTCPSGYHGKICEK-------------------------CFCRPGFAGDHCDVDFDECL 353
            C C SG+ G  C++                         CFCRPGF+GD+CDVDFDECL
Sbjct: 649 TCRCMSGFTGMHCDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECL 708

Query: 354 SNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCP 413
           S PC++GATC+NKING+ C+C PGY+GK CSI+INEC S+PCL+GATCID +A+F+C CP
Sbjct: 709 SQPCYHGATCENKINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCP 768

Query: 414 KGLTGRLCETNIDDCE 429
            G+ G+LCETNIDDCE
Sbjct: 769 PGIVGKLCETNIDDCE 784

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340386674|ref|XP_003391833.1| PREDICTED: neurogenic locus notch protein homolog, partial [Amphimedon queenslandica]

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 232/489 (47%), Gaps = 102/489 (20%)

Query: 13  DAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP 72
           D   NPCQNG  C  D+  +Y+CTC   +T              +C T I++       P
Sbjct: 105 DCSPNPCQNGATC-TDQVADYNCTCVQGYT------------GKNCSTNIND---CNPNP 148

Query: 73  CLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVC---VWMFDVT-IQ 122
           C NGATC  Q+ +  Y C C  GY        I DC  NPC N   C   V  ++ T +Q
Sbjct: 149 CQNGATCTDQVAD--YNCQCAQGYTGKNCSTNINDCNPNPCQNGATCTDQVADYNCTCVQ 206

Query: 123 VYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPCL 171
            Y G+ C    I DC+ NPC N   C D            Y G+ C    I DC+ NPC 
Sbjct: 207 GYTGKNCST-NINDCNPNPCQNGATCTDQVADYNCQCAQGYTGKNCST-NINDCNPNPCH 264

Query: 172 NDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVDEV--YKGRYWELPE 218
           N   C D            Y G+      I DC+ NPC N   C DEV  Y     +   
Sbjct: 265 NGATCTDQVADYSCTCAQGYTGKNCST-NINDCSPNPCQNGATCTDEVADYSCTCVQGYT 323

Query: 219 IRDCTSNPCLNDCV-NPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKHG 265
            ++C++N  +NDC  NPCQNG  C  D+  +Y+C C   +TG            +PC++G
Sbjct: 324 GKNCSTN--INDCNPNPCQNGATC-TDQVADYNCQCVQGYTGKNCSTNINDCNPNPCENG 380

Query: 266 S-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPS 324
           + C D+ A Y C C   Y GKNCS  +  C  P+ C NG TC   + D     +NC C  
Sbjct: 381 ATCTDQVADYNCQCAQGYTGKNCSTNINDC-NPNPCQNGATCTNQVAD-----YNCQCAQ 434

Query: 325 GYHGKICE------------------------KCFCRPGFAGDHCDVDFDECLSNPCFNG 360
           GY GK C                          C C  G+ G +C  + ++C  NPC NG
Sbjct: 435 GYTGKNCSTNINDCSPNPCHNGATCTDQVADYNCLCVQGYTGKNCSTNINDCNPNPCHNG 494

Query: 361 ATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRL 420
           ATC +++  Y+C CA GY+GK CS NIN+C  +PC +GATC D+VA ++C C +G TG+ 
Sbjct: 495 ATCTDQVADYSCTCAQGYTGKNCSTNINDCNPNPCQNGATCTDQVADYNCQCAQGYTGKN 554

Query: 421 CETNIDDCE 429
           C TNI+DC 
Sbjct: 555 CSTNINDCN 563

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|260833680|ref|XP_002611840.1| hypothetical protein BRAFLDRAFT_123361 [Branchiostoma floridae] gi|229297212|gb|EEN67849.1| hypothetical protein BRAFLDRAFT_123361 [Branchiostoma floridae]

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 235/471 (49%), Gaps = 104/471 (22%)

Query: 13  DAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP 72
           D  +NPC+NGGKC ED+   + C+C           A    G++ CE  I +       P
Sbjct: 311 DCSQNPCENGGKC-EDQVNGFKCSC-----------AKGYSGNV-CELNIDD---CAGKP 354

Query: 73  CLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTIQ 122
           C NGA CR ++    +EC+CP GY        + DC +NPC N+G C  M D    V   
Sbjct: 355 CQNGAECRDKVDG--FECICPKGYAGVLCETNVDDCAANPCQNEGTCKDMVDGYQCVCKV 412

Query: 123 VYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPCL 171
            + G  CE+ ++ DC  +PC N G C D            Y G  CEL  I DC+  PC 
Sbjct: 413 GFAGNNCEI-DVNDCKDDPCQNGGECKDKVNGFECVCPKGYSGNLCEL-NIDDCAGKPCQ 470

Query: 172 NDGVCVDVY--------KGRYWELPE--IRDCTSNPCLNDGVCVDEV----------YKG 211
           NDG C D          KG   +L E  + DC +NPC N+G C D V          Y G
Sbjct: 471 NDGECKDKVNGFTCICPKGYAGDLCETNVDDCAANPCQNEGTCKDMVDGYQCVCKLGYAG 530

Query: 212 RYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGD----------- 260
              E+ ++ DC   PC        QNGG+C +D+   Y+C C   ++G+           
Sbjct: 531 NNCEI-DVNDCEDKPC--------QNGGEC-KDKVNGYECICPKGYSGNACEVNIDDCAG 580

Query: 261 -PCKHGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
            PC++G+ C DK  G+ C CP  YGG  C   +  C     C N GTC+  LVD      
Sbjct: 581 KPCQNGAECRDKVDGFDCICPKGYGGDLCETNVDDCA-ESPCQNEGTCED-LVD------ 632

Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
                 GY      +C C+ G+ G++C+ + ++C  NPC NG  CQ+K+NG+ CVCA GY
Sbjct: 633 ------GY------RCTCKLGYGGNNCETNINDCKDNPCQNGGECQDKVNGFECVCAKGY 680

Query: 379 SGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
           SG  C +NI++C   PC +GA C D V  F CVCPKG  G+LCETN++DCE
Sbjct: 681 SGNLCELNIDDCAGQPCHNGAACTDLVDGFECVCPKGFAGKLCETNVNDCE 731

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340382857|ref|XP_003389934.1| PREDICTED: neurogenic locus notch homolog protein 1-like [Amphimedon queenslandica]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 177/489 (36%), Positives = 227/489 (46%), Gaps = 102/489 (20%)

Query: 13  DAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP 72
           D   NPC NG  C  D+  NY C C   +T       N ++    C+T           P
Sbjct: 160 DCDPNPCNNGASC-MDKVANYSCICLDGYT-----GRNCSIEINECDTN----------P 203

Query: 73  CLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVC---VWMFDVT-IQ 122
           C NGATC  Q+ +  Y C C  GY        I DC+ NPC N   C   V  +  T  Q
Sbjct: 204 CQNGATCTDQVAD--YSCTCAQGYTGKNCSTNINDCSPNPCQNGATCTDQVADYSCTCAQ 261

Query: 123 VYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPCL 171
            Y G+ C    I DCS NPC N   C D            Y G+ C    I DC+ NPC 
Sbjct: 262 GYTGKNCST-NINDCSPNPCQNGATCTDQVADYNCLCVQGYTGKNCNT-NIDDCNPNPCQ 319

Query: 172 NDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVDEV--YKGRYWELPE 218
           ND  C D            Y G+      I DC+ NPC ND  C D+V  Y     +   
Sbjct: 320 NDATCTDQVADYSCTCAQGYTGKNCST-NINDCSPNPCQNDATCTDQVADYSCTCAQGYT 378

Query: 219 IRDCTSNPCLNDCV-NPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKHG 265
            ++C++N  +NDC  NPCQNG  C  D+  +Y CTC   +TG            +PC++G
Sbjct: 379 GKNCSTN--INDCSPNPCQNGATC-TDQVADYSCTCAQGYTGKNCSTNINDCSPNPCQNG 435

Query: 266 S-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPS 324
           + C D+ A Y C C   Y GKNCS  +  C  P+ C NG TC   + D     +NC C  
Sbjct: 436 ATCTDQVADYSCTCAQGYTGKNCSTNINDC-SPNPCQNGATCTDQVAD-----YNCLCVQ 489

Query: 325 GYHGKICE------------------------KCFCRPGFAGDHCDVDFDECLSNPCFNG 360
           GY GK C                          C C  G+ G +C  + ++C  NPC NG
Sbjct: 490 GYTGKNCNTNIDDCNPNPCQNGATCTDQVADYNCQCVQGYTGKNCSTNINDCNPNPCQNG 549

Query: 361 ATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRL 420
           ATC +++  Y C C  GY+GK CS NIN+C  +PC +GA C D+VA +SC C +G TG+ 
Sbjct: 550 ATCTDQVADYNCQCVQGYTGKNCSTNINDCSPNPCQNGAMCTDQVADYSCTCAQGYTGKN 609

Query: 421 CETNIDDCE 429
           C TNI+DC 
Sbjct: 610 CSTNINDCS 618

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|270002371|gb|EEZ98818.1| hypothetical protein TcasGA2_TC004424 [Tribolium castaneum]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 249/584 (42%), Gaps = 186/584 (31%)

Query: 6   ISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI-SN 64
           + L +PC+     C+NG  CN D TG Y CTC    T              HCE  I  N
Sbjct: 218 MDLGNPCERNPAICKNGATCNADNTGVYTCTCPPNFT------------GKHCEQLIVVN 265

Query: 65  QICTTAPPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCV---- 114
           Q C    PC NGATC   ++    EC+C PG+        I DC  NPC N G+C     
Sbjct: 266 QQCQDN-PCQNGATC---VSNGNMECLCLPGFDGPKCEFNIDDCKGNPCKNGGICRDGLD 321

Query: 115 -WMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----------EIG 163
            +  D +   Y GR+C++  I +C ++PCLN G C D Y G  C+ P           + 
Sbjct: 322 NFTCDCSRTGYTGRFCQI-NINECETSPCLNHGTCFDTYGGFLCQCPPGYGGAYCQNTLH 380

Query: 164 DCSSNPCLNDGVCVDV-------------------------------------------- 179
            CSS  CLN+G C++                                             
Sbjct: 381 ACSSQQCLNEGQCINTPDGFKCICPDGFAGERCEAGERQISCDGTKCPPYADCVKAGNNF 440

Query: 180 -------YKGRYWELPEIRDCTSNPCLNDGVCV----------DEVYKGRYWELPEIRDC 222
                  Y G Y        C +NPC N G+C              + G+  E+P     
Sbjct: 441 GCICKPEYPGNYPNCSIPNICANNPCKNQGICTSWNGYFNCSCSPGFTGQLCEIP----V 496

Query: 223 TSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCK-HGSCV- 268
            S P  N   NPCQNGG C +  TG + C C     G            +PC+ + +C+ 
Sbjct: 497 DSQPNCNS--NPCQNGGSCFDKPTGGFYCNCTDQWMGTYCNESYDVCKLEPCQNNATCIS 554

Query: 269 -DKRAGYFCDCPPTYGGKNCSVELTGCVG------------------------------- 296
              +  + C+C P + G++C   +  CVG                               
Sbjct: 555 SQNKRDFVCECLPGFEGQHCERNIDDCVGVTCPYGQVCFDLVNDHECRCPLGYKGENCTI 614

Query: 297 ------PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------------------ 332
                    C+NG TC+   ++  ++ F C C  G+ G+ CE                  
Sbjct: 615 DADPCAKKPCMNGATCQ---MNHNENGFVCNCLEGFSGERCETDIDECKNQPGICNEGIC 671

Query: 333 -------KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
                  +C+CRPG+ G+ CD+DFDECLS PC + ATC NK+N Y C+C PGY GK+CSI
Sbjct: 672 QNELGGFQCYCRPGYTGERCDLDFDECLSMPCRHQATCLNKVNNYECICPPGYEGKDCSI 731

Query: 386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
           NINECE  PC++G+TCID +  F+C C  GLTG++CE NIDDCE
Sbjct: 732 NINECEPMPCMNGSTCIDGINKFTCNCQPGLTGKICEINIDDCE 775

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013994|ref|XP_003691029.1| PREDICTED: LOW QUALITY PROTEIN: protein crumbs-like [Apis florea]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 243/565 (43%), Gaps = 173/565 (30%)

Query: 18  PCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGA 77
           PC+NGG C+ED  G++ C C    T             +HCE+ +  ++C  +P C N  
Sbjct: 135 PCRNGGTCSEDAKGDFSCACKPGFT------------GLHCESQLGVRVCEQSP-CRNEG 181

Query: 78  TCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFDVTIQV-----YKG 126
            C   +TE  Y+C C PG+        I +C+ NPC + GVC+   +    +     Y+G
Sbjct: 182 VCLA-VTEAEYKCDCQPGWSGKNCEANINECSPNPCRHGGVCIDGVNNYTCICERTGYEG 240

Query: 127 RYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPE----------IGDCSSNPCLNDGVC 176
             CE+ +I +C +NPCLN+GVC D Y G  C  P           + +C SNPC +   C
Sbjct: 241 SSCEV-DIDECLANPCLNNGVCYDNYGGYICHCPNGFEGQNCELNLNECLSNPCKHGADC 299

Query: 177 VD-----------VYKGRYWELPE------------------------------------ 189
           VD            Y GR+ EL                                      
Sbjct: 300 VDDVGSYHCNCPAGYAGRHCELRSLCENAACPSNSICVEDAHGPQCVCNPGYMGNPPNCT 359

Query: 190 IRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNE------ 243
           +  C +NPC N G C            PE +  T     +D  + C NGG C E      
Sbjct: 360 VNYCANNPCGNGGTCTSNKDGFNCTCPPEWKGATCLSSASDWCSACYNGGSCLETRFGIM 419

Query: 244 ------------------------------DETGNYDCTCDALHTG------------DP 261
                                         D  G Y CTC+   TG            DP
Sbjct: 420 CQCPRFWTGPQCKEPITCRDLPCKQASACHDYPGGYYCTCEPGWTGAECSIDVDECSSDP 479

Query: 262 CKHGS-CVDKRAGYFCDCPPTY-----------GGKNCSVELTGCVGPDTCLNGGTCKPY 309
           C++G  C+D++  Y+C C P Y            GKNC + +  C+    C NGGTC   
Sbjct: 480 CRNGGVCIDQQNSYYCQCLPGYTGLFLICHLRSAGKNCQINVDECLS-QPCQNGGTC--- 535

Query: 310 LVDETQHRFNCTCPSGYHGKICE-------------------------KCFCRPGFAGDH 344
            +D     F C CP G+ GK C+                          C CRPGF+GDH
Sbjct: 536 -IDRINGYFVCECPRGFEGKTCDVNVDDCVDGSSLCNNGICVNTDGSYNCXCRPGFSGDH 594

Query: 345 CDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDE 404
           CD+D DECL  PC N ATC + IN + C C PGYSGK C  ++NECES+PCL+ ATC+DE
Sbjct: 595 CDIDIDECLCGPCKNNATCIDGINTFECQCPPGYSGKTCDTDVNECESNPCLNSATCVDE 654

Query: 405 VATFSCVCPKGLTGRLCETNIDDCE 429
           +A+++CVC  G  G  CE NIDDCE
Sbjct: 655 IASYTCVCSPGFRGFNCEINIDDCE 679

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076648|ref|XP_970640.1| PREDICTED: similar to crumbs CG6383-PA [Tribolium castaneum]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 249/584 (42%), Gaps = 186/584 (31%)

Query: 6   ISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI-SN 64
           + L +PC+     C+NG  CN D TG Y CTC    T              HCE  I  N
Sbjct: 190 MDLGNPCERNPAICKNGATCNADNTGVYTCTCPPNFT------------GKHCEQLIVVN 237

Query: 65  QICTTAPPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCV---- 114
           Q C    PC NGATC   ++    EC+C PG+        I DC  NPC N G+C     
Sbjct: 238 QQCQDN-PCQNGATC---VSNGNMECLCLPGFDGPKCEFNIDDCKGNPCKNGGICRDGLD 293

Query: 115 -WMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----------EIG 163
            +  D +   Y GR+C++  I +C ++PCLN G C D Y G  C+ P           + 
Sbjct: 294 NFTCDCSRTGYTGRFCQI-NINECETSPCLNHGTCFDTYGGFLCQCPPGYGGAYCQNTLH 352

Query: 164 DCSSNPCLNDGVCVDV-------------------------------------------- 179
            CSS  CLN+G C++                                             
Sbjct: 353 ACSSQQCLNEGQCINTPDGFKCICPDGFAGERCEAGERQISCDGTKCPPYADCVKAGNNF 412

Query: 180 -------YKGRYWELPEIRDCTSNPCLNDGVCV----------DEVYKGRYWELPEIRDC 222
                  Y G Y        C +NPC N G+C              + G+  E+P     
Sbjct: 413 GCICKPEYPGNYPNCSIPNICANNPCKNQGICTSWNGYFNCSCSPGFTGQLCEIP----V 468

Query: 223 TSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCK-HGSCV- 268
            S P  N   NPCQNGG C +  TG + C C     G            +PC+ + +C+ 
Sbjct: 469 DSQPNCNS--NPCQNGGSCFDKPTGGFYCNCTDQWMGTYCNESYDVCKLEPCQNNATCIS 526

Query: 269 -DKRAGYFCDCPPTYGGKNCSVELTGCVG------------------------------- 296
              +  + C+C P + G++C   +  CVG                               
Sbjct: 527 SQNKRDFVCECLPGFEGQHCERNIDDCVGVTCPYGQVCFDLVNDHECRCPLGYKGENCTI 586

Query: 297 ------PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------------------ 332
                    C+NG TC+   ++  ++ F C C  G+ G+ CE                  
Sbjct: 587 DADPCAKKPCMNGATCQ---MNHNENGFVCNCLEGFSGERCETDIDECKNQPGICNEGIC 643

Query: 333 -------KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
                  +C+CRPG+ G+ CD+DFDECLS PC + ATC NK+N Y C+C PGY GK+CSI
Sbjct: 644 QNELGGFQCYCRPGYTGERCDLDFDECLSMPCRHQATCLNKVNNYECICPPGYEGKDCSI 703

Query: 386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
           NINECE  PC++G+TCID +  F+C C  GLTG++CE NIDDCE
Sbjct: 704 NINECEPMPCMNGSTCIDGINKFTCNCQPGLTGKICEINIDDCE 747

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390335924|ref|XP_001198702.2| PREDICTED: fibropellin-1-like [Strongylocentrotus purpuratus]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 178/484 (36%), Positives = 229/484 (47%), Gaps = 97/484 (20%)

Query: 15  QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCL 74
             NPC NGG+C+ D+  ++ C CD       +GL     GSI CE  I  Q C + P C 
Sbjct: 208 NSNPCLNGGRCS-DKVDSFLCICD-------LGLT----GSI-CEIDI--QECASNP-CK 251

Query: 75  NGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFDVTI----QVY 124
           NG TCR ++    Y C C PGY      ++I +C SNPC N G C    +  +      +
Sbjct: 252 NGGTCR-EVGLNAYTCSCAPGYSGPTCREDINECASNPCQNGGACADEINGFLCDCSPGF 310

Query: 125 KGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCE----------LPEIGDCSSNPCLNDG 174
            G  C+   I +C+S PC N  +C+D   G  C+             I +C SNPC N G
Sbjct: 311 NGTTCQF-NINECASTPCQNGAICIDEINGYRCDCRVGFNGTNCESNIDECKSNPCQNGG 369

Query: 175 VCVDVYKGRYWE----------LPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEI--RDC 222
            C DV  G                 I +C SNPC N G C D +   +    P     DC
Sbjct: 370 SCTDVVNGYLCVCSPGYNGSECTSNIDECASNPCQNGGTCADVINGYQCTCSPGYTGSDC 429

Query: 223 TSNPCLNDCV-NPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKH-GSCV 268
            S+  +N+C  NPCQNGG C  DE   Y+C C   +TG            +PC++ G+C 
Sbjct: 430 ASD--INECASNPCQNGGNC-MDEINGYNCDCSPGYTGTECASNIDECASNPCQNDGTCT 486

Query: 269 DKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHG 328
           D+  GY CDC P Y G  C+  +  C   + C NGGTC   +     + + C C  GY G
Sbjct: 487 DEINGYNCDCTPGYNGAECASNIDEC-SSNPCQNGGTCTDGI-----NGYQCACSPGYTG 540

Query: 329 KICEK------------------------CFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
             C                          C C PGF G  C  + DEC SNPC NG TC 
Sbjct: 541 SNCASDINECASTPCQNGGNCMDEINGYNCQCSPGFTGAECASNVDECASNPCQNGGTCA 600

Query: 365 NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
           ++INGY C C PGY+G +C  NINEC  +PC +GA CIDE+  + C C  G  G  CE+N
Sbjct: 601 DEINGYQCDCLPGYNGSDCESNINECAINPCENGAMCIDEINAYRCDCLVGFNGSNCESN 660

Query: 425 IDDC 428
           IDDC
Sbjct: 661 IDDC 664

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|328709395|ref|XP_003243946.1| PREDICTED: protein crumbs-like isoform 2 [Acyrthosiphon pisum]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 243/542 (44%), Gaps = 160/542 (29%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSI--HCETPISN---QICTTAP 71
           NPCQNGG+C  D+ G Y+C C               LG I  +CE  + +    +C T  
Sbjct: 398 NPCQNGGQC-RDQVGTYECRC--------------ALGFIGRNCEINVDDCESAVCPTNS 442

Query: 72  PCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWM----FDVTIQV-YKG 126
            C++G        +  Y  V PP   EI  C+S+PC N G C  +    F+ +  + Y G
Sbjct: 443 ICVDGVASYSCHCKSGYTGV-PPNCSEITVCSSHPCQNGGSCGLLPNGQFNCSCSLGYTG 501

Query: 127 RYCELPEIGD-------CSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSN 168
            +CE   I         C   PCLN G C+             + GR CE+     C++ 
Sbjct: 502 AFCEHGNIVARSHADDVCVIMPCLNSGTCISQGSNYECKCPAGFTGRNCEMTM--KCNAT 559

Query: 169 PCLNDGVCVDVYKGRY------WELPE--------------------------------- 189
           PC +   C D   G Y      W   +                                 
Sbjct: 560 PCQHFVSCRDYAGGYYCECEPGWSGQQCNQRDPACSPNTCAHGGTCTLLAGQADPFHCDC 619

Query: 190 ------------IRDCTSNPCLNDGVCVDEV----------YKGRYWELPEIRDCTSNPC 227
                       I +C S PCLN G+C D +          Y G Y +LP    CT NP 
Sbjct: 620 PPGFTGQTCQIDIDECMSKPCLNGGICHDLINGFRCNCTDNYMGAYCQLP-FDACTKNP- 677

Query: 228 LNDCVNPCQNGGKCNEDETG--NYDCTCDALHTG-------DPCKHGSC------VDKRA 272
                +PC N G C    +   +Y C C     G       D CK G+C      +D   
Sbjct: 678 -----SPCLNNGTCLHKTSSLKDYYCKCSPGFEGKNCEGNIDECKTGTCPVGKVCIDGIN 732

Query: 273 GYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
            Y C+CP  Y G+NCS  L  C   + C N  TC      E    + C C SG+ G  C+
Sbjct: 733 TYECECPEGYTGENCSKILNDCR-DNLCKNNSTCI-----EDVDGYTCRCMSGFTGMHCD 786

Query: 333 K-------------------------CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKI 367
           +                         CFCRPGF+GD+CDVDFDECLS PC++GATC+NKI
Sbjct: 787 QDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECLSQPCYHGATCENKI 846

Query: 368 NGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
           NG+ C+C PGY+GK CSI+INEC S+PCL+GATCID +A+F+C CP G+ G+LCETNIDD
Sbjct: 847 NGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCPPGIVGKLCETNIDD 906

Query: 428 CE 429
           CE
Sbjct: 907 CE 908

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
UNIPROTKB|P82279	1406	CRB1 "Protein crumbs homolog 1	0.871	0.266	0.336	2.5e-61
UNIPROTKB|F5H0L2	1382	CRB1 "Protein crumbs homolog 1	0.869	0.269	0.337	3e-61
ZFIN|ZDB-GENE-060612-1	1466	crb2a "crumbs homolog 2a" [Dan	0.878	0.257	0.333	2.2e-56
UNIPROTKB|F1M7Y4	2208	Notch1 "Neurogenic locus notch	0.881	0.171	0.334	7.3e-56
ZFIN|ZDB-GENE-060610-1	1458	crb2b "crumbs homolog 2b" [Dan	0.885	0.260	0.315	8.6e-56
FB|FBgn0004647	2703	N "Notch" [Drosophila melanoga	0.906	0.143	0.347	4.3e-55
UNIPROTKB|F6XUN7	1320	CRB1 "Uncharacterized protein"	0.874	0.284	0.321	1e-53
UNIPROTKB|F1Q0H7	1408	CRB1 "Uncharacterized protein"	0.874	0.266	0.321	1.3e-53
ZFIN|ZDB-GENE-990415-183	2465	notch1b "notch homolog 1b" [Da	0.885	0.154	0.339	1.3e-54
FB|FBgn0259685	2146	crb "crumbs" [Drosophila melan	0.892	0.178	0.310	1.8e-54

UNIPROTKB|P82279 CRB1 "Protein crumbs homolog 1" [Homo sapiens (taxid:9606)]

 Score = 531 (192.0 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
 Identities = 153/455 (33%), Positives = 204/455 (44%)

Query:     7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQI 66
             ++  PC +  NPCQ    C  +  G     C      C  G +    G+I CET I +  
Sbjct:    69 NMKDPCFS--NPCQGSATC-VNTPGERSFLCK-----CPPGYS----GTI-CETTIGS-- 113

Query:    67 CTTAPPCLNGATCRPQLTEQLYE-CVCPPGYK----EIR--DCTSNPCLNDGVCVWMFD- 118
             C     C +G  C     + +Y  C+CP GY     EI   +C S+PC N  VC    D 
Sbjct:   114 CGKNS-CQHGGICHQ---DPIYPVCICPAGYAGRFCEIDHDECASSPCQNGAVCQDGIDG 169

Query:   119 ---VTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGV 175
                  +  Y+GR+C+L E+ +C+S+PC N+  C++   GRY             C    +
Sbjct:   170 YSCFCVPGYQGRHCDL-EVDECASDPCKNEATCLNEI-GRYT------------C----I 211

Query:   176 CVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEV----------YKGRYWELPEIRDCTSN 225
             C   Y G   EL EI +C S PCLN   C D +          + G + EL    +C S 
Sbjct:   212 CPHNYSGVNCEL-EIDECWSQPCLNGATCQDALGAYFCDCAPGFLGDHCEL-NTDECASQ 269

Query:   226 PCLND--CVNPCQNGGKCNEDETGNYDCTCDALHT---GDPC-KHGSCVDKRAGYFCDCP 279
             PCL+   CV+  +N   CN   +G     C+ L       PC  + +C D    Y C C 
Sbjct:   270 PCLHGGLCVDG-ENRYSCNCTGSGFTGTHCETLMPLCWSKPCHNNATCEDSVDNYTCHCW 328

Query:   280 PTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG--YHGKICEKCFCR 337
             P Y G  C ++L  C   + C + G C   L  E Q+      PS   YH      C C+
Sbjct:   329 PGYTGAQCEIDLNEC-NSNPCQSNGECVE-LSSEKQYGRITGLPSSFSYHEASGYVCICQ 386

Query:   338 PGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA------PGYSGKECSININECE 391
             PGF G HC+ D +EC SNPC NG TC+N    YTC C         Y G++CS  +  C 
Sbjct:   387 PGFTGIHCEEDVNECSSNPCQNGGTCENLPGNYTCHCPFDNLSRTFYGGRDCSDILLGCT 446

Query:   392 SSPCLHGATCI----DEVATFSCVCPKGLTGRLCE 422
                CL+  TCI    D    FSC+CP G TG LCE
Sbjct:   447 HQQCLNNGTCIPHFQDGQHGFSCLCPSGYTGSLCE 481

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

UNIPROTKB|F5H0L2 CRB1 "Protein crumbs homolog 1" [Homo sapiens (taxid:9606)]

 Score = 530 (191.6 bits), Expect = 3.0e-61, Sum P(2) = 3.0e-61
 Identities = 153/454 (33%), Positives = 203/454 (44%)

Query:     8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQIC 67
             +  PC +  NPCQ    C  +  G     C      C  G +    G+I CET I +  C
Sbjct:     1 MKDPCFS--NPCQGSATC-VNTPGERSFLCK-----CPPGYS----GTI-CETTIGS--C 45

Query:    68 TTAPPCLNGATCRPQLTEQLYE-CVCPPGYK----EIR--DCTSNPCLNDGVCVWMFD-- 118
                  C +G  C     + +Y  C+CP GY     EI   +C S+PC N  VC    D  
Sbjct:    46 GKNS-CQHGGICHQ---DPIYPVCICPAGYAGRFCEIDHDECASSPCQNGAVCQDGIDGY 101

Query:   119 --VTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
                 +  Y+GR+C+L E+ +C+S+PC N+  C++   GRY             C    +C
Sbjct:   102 SCFCVPGYQGRHCDL-EVDECASDPCKNEATCLNEI-GRYT------------C----IC 143

Query:   177 VDVYKGRYWELPEIRDCTSNPCLNDGVCVDEV----------YKGRYWELPEIRDCTSNP 226
                Y G   EL EI +C S PCLN   C D +          + G + EL    +C S P
Sbjct:   144 PHNYSGVNCEL-EIDECWSQPCLNGATCQDALGAYFCDCAPGFLGDHCEL-NTDECASQP 201

Query:   227 CLND--CVNPCQNGGKCNEDETGNYDCTCDALHT---GDPC-KHGSCVDKRAGYFCDCPP 280
             CL+   CV+  +N   CN   +G     C+ L       PC  + +C D    Y C C P
Sbjct:   202 CLHGGLCVDG-ENRYSCNCTGSGFTGTHCETLMPLCWSKPCHNNATCEDSVDNYTCHCWP 260

Query:   281 TYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG--YHGKICEKCFCRP 338
              Y G  C ++L  C   + C + G C   L  E Q+      PS   YH      C C+P
Sbjct:   261 GYTGAQCEIDLNEC-NSNPCQSNGECVE-LSSEKQYGRITGLPSSFSYHEASGYVCICQP 318

Query:   339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA------PGYSGKECSININECES 392
             GF G HC+ D +EC SNPC NG TC+N    YTC C         Y G++CS  +  C  
Sbjct:   319 GFTGIHCEEDVNECSSNPCQNGGTCENLPGNYTCHCPFDNLSRTFYGGRDCSDILLGCTH 378

Query:   393 SPCLHGATCI----DEVATFSCVCPKGLTGRLCE 422
               CL+  TCI    D    FSC+CP G TG LCE
Sbjct:   379 QQCLNNGTCIPHFQDGQHGFSCLCPSGYTGSLCE 412

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-060612-1 crb2a "crumbs homolog 2a" [Danio rerio (taxid:7955)]

 Score = 577 (208.2 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
 Identities = 152/456 (33%), Positives = 218/456 (47%)

Query:    12 CDAQRNPCQNGGKCN--EDETGNYDCTCDALHTVC----CVG----LANQTLG-SIHCET 60
             C+   N C    +C   E E G    TC      C    CVG      N+  G    C  
Sbjct:    68 CEELYNACMFA-ECEGCESELGTDHYTCPEDKDECKSGPCVGPHSECVNEQNGYKCLCPP 126

Query:    61 PISNQICTTA------PPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCL 108
                 + C+         PCLN  TCR ++ +  +EC C  G++      ++ +C S+PC 
Sbjct:   127 GFGGEDCSHRITDCIDEPCLNNGTCR-RIVDG-FECACSDGFRGETCEEDLDECDSHPCQ 184

Query:   109 NDGVC---VWMFDV-TIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGD 164
             N  +C   V  +    +  Y+G  CE+ +I +C+S PC N+G C++  K RY        
Sbjct:   185 NGAICLDGVNKYQCFCVPGYQGHNCEI-DINECASRPCWNNGTCING-KDRYL------- 235

Query:   165 CSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEV--YKGRYWELPEIRDC 222
             C          C+  Y G   EL EI +C SNPC N   C D V  Y     +  E  DC
Sbjct:   236 CD---------CLLGYTGVNCEL-EIDECESNPCQNGATCHDLVGLYTCDCVQGFEGSDC 285

Query:   223 TSNPCLNDCVN-PCQNGGKCNEDETGNYDCTCDAL-HTGD------------PCKHG-SC 267
               N  +++C + PCQNGG C+ D   +Y+C C+   + GD            PC+HG +C
Sbjct:   286 EIN--IDECESGPCQNGGLCH-DRIDSYECECEGTGYMGDHCEEDIPECASHPCQHGGTC 342

Query:   268 VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC--KPYLVD-ETQHRFNCTCPS 324
             ++    Y C C P + G NC V++  C     C N G C  K      ET   F      
Sbjct:   343 LEGINHYNCSCWPGFEGGNCEVDIDECADAP-CENDGECFEKSNPEHWETDWEFTYATAV 401

Query:   325 GYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS 384
             GY   +C+   C+PG+ G++C V+ +EC+S PC NG +C++ +NGY C C  G++G EC 
Sbjct:   402 GY---VCQ---CQPGYTGENCSVNINECVSEPCHNGGSCKDLVNGYMCECPEGFTGVECE 455

Query:   385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRL 420
             +NI+ECES+PCL+G  C D VA + C C +   G L
Sbjct:   456 VNIDECESAPCLNGGVCEDGVAEYKCHCAEAEEGLL 491

GO:0005509 "calcium ion binding" evidence=IEA

GO:0045176 "apical protein localization" evidence=IGI

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IEP

UNIPROTKB|F1M7Y4 Notch1 "Neurogenic locus notch homolog protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 591 (213.1 bits), Expect = 7.3e-56, P = 7.3e-56
 Identities = 151/451 (33%), Positives = 201/451 (44%)

Query:    13 DAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP 72
             + + NPC NGG C +D T  Y CTC             +     +C+T I+   C + P 
Sbjct:   736 ECESNPCVNGGTC-KDMTSGYVCTC------------REGFSGPNCQTNINE--CASNP- 779

Query:    73 CLNGATCRPQLTEQLYECVCPPGYK----EI--RDCTSNPCLNDGVCVWMFDVTIQVYKG 126
             CLN  TC   +    Y+C CP  Y     E+    C ++PC N GVC    D     Y+ 
Sbjct:   780 CLNQGTCIDDVAG--YKCNCPLPYTGATCEVVLAPCATSPCKNSGVCKESED-----YES 832

Query:   127 RYCELP--EIGDCSS--NPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDV--- 179
               C  P    G C+   N    D  C+  ++G +CE  +I +C+SNPC N   C D    
Sbjct:   833 FSCVYPCHNGGSCTDGVNAAFCD--CLPGFQGAFCE-EDINECASNPCQNGANCTDCVDS 889

Query:   180 --------YKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC 231
                     + G + E     DCT + C N G CVD +        P          +N+C
Sbjct:   890 YTCTCPTGFNGIHCE-NNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQYDVNEC 948

Query:   232 VN-PCQNGGKCNEDETGNYDCTCDALHTG----------D--PCKHGS-CVDKRAGYFCD 277
              + PC +GG C +D  G Y CTC   +TG          D  PCK+G  C      Y C+
Sbjct:   949 DSRPCLHGGTC-QDSYGTYKCTCPQGYTGLNCQNLVRWCDSAPCKNGGKCWQTNTQYHCE 1007

Query:   278 CPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCR 337
             C   + G NC V    C   +           L+   QH   C      H      C C+
Sbjct:  1008 CRSGWTGFNCDVLSVSC---EVAAQKRGIDVTLL--CQHGGLCVDEEDKH-----YCHCQ 1057

Query:   338 PGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLH 397
              G+ G +C+ + DEC  NPC NGATC + + G++C C  GY G  CS  INEC S PC +
Sbjct:  1058 AGYTGSYCEDEVDECSPNPCQNGATCTDYLGGFSCKCVAGYHGSNCSEEINECLSQPCQN 1117

Query:   398 GATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
             G TCID   T+ C CP+G  G  CE N+DDC
Sbjct:  1118 GGTCIDLTNTYKCSCPRGTQGVHCEINVDDC 1148

GO:0004872 "receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

ZFIN|ZDB-GENE-060610-1 crb2b "crumbs homolog 2b" [Danio rerio (taxid:7955)]

 Score = 529 (191.3 bits), Expect = 8.6e-56, Sum P(2) = 8.6e-56
 Identities = 146/463 (31%), Positives = 202/463 (43%)

Query:     5 PISLSSPCDAQRNPCQNGG---KCNEDE-TGNYDCTC-DALHTVCCVGLANQTLGSIHCE 59
             PI     C+   +PC + G    C     + NY C C D      C     Q +   H  
Sbjct:    60 PIYTGPNCERLLDPCDSAGCPSTCIATPGSQNYTCLCPDGFSGPNCT----QNINECH-- 113

Query:    60 TPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVC 113
                SN        C++G           Y C CP GY        +RDC+ +PC N+  C
Sbjct:   114 ---SNPCSGVRSFCVDGVNG--------YSCHCPSGYSGADCGTRVRDCSDDPCFNNATC 162

Query:   114 VWMFDV----TIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNP 169
             VW  D         ++GR CE  +I +C S PC N  +C D   G Y        C    
Sbjct:   163 VWAPDGYECHCAAGFRGRNCE-EDIDECLSQPCRNGAICQDAV-GVY-------QC---- 209

Query:   170 CLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRY-WE-LPEIRDCTSNPC 227
                   CV  ++G + E+ +I +C S PC N+G CV+   + RY  E L           
Sbjct:   210 -----YCVPGFQGFHCEI-DINECASQPCENNGTCVNG--RDRYICECLFGFTGLNCEVD 261

Query:   228 LNDC-VNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKHGS-CVDKRAG 273
             +++C  +PCQNG  C+ D  G Y C C   + G             PC+HG  C+D   G
Sbjct:   262 VDECEASPCQNGAVCH-DHVGLYTCECVPGYEGINCELDIDECESSPCRHGGVCLDMVNG 320

Query:   274 YFCDCPPT-YGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
             Y CDC  T + G  C +++  C   D C +G TC    ++   H + C C +GY G  CE
Sbjct:   321 YECDCSGTGFMGFFCDIDIPEC-SSDPCQHGATC----LEGVNH-YTCICWTGYEGVNCE 374

Query:   333 ----KCFCRPGFAGDHCDVDFDECLSN--PCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
                 +C  +P      C    D  L    P  +         GY C C  G++G+ CS+N
Sbjct:   375 LDVDECVSQPCENEGQCFQRSDSSLYRVLPELDTDFSFQSAAGYLCQCVSGFTGENCSVN 434

Query:   387 INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
             +NECES+PC +G +C D V  F C CP G  G +CET +D+CE
Sbjct:   435 VNECESAPCENGGSCEDLVNAFQCSCPPGFAGAVCETELDECE 477

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003094 "glomerular filtration" evidence=IMP

GO:0032835 "glomerulus development" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

FB|FBgn0004647 N "Notch" [Drosophila melanogaster (taxid:7227)]

 Score = 585 (211.0 bits), Expect = 4.3e-55, P = 4.3e-55
 Identities = 159/457 (34%), Positives = 203/457 (44%)

Query:     8 LSSPCDAQRNPCQNGGKCNEDE-TGNYDCTCDALH--TVCCVGLANQTLGSIHCETPISN 64
             L   C +  NPC     C+     G+Y C+C   +    C   +     GS  CE    N
Sbjct:   409 LDDACTS--NPCHADAICDTSPINGSYACSCATGYKGVDCSEDIDECDQGS-PCE---HN 462

Query:    65 QICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCV---WMFD-VT 120
              IC   P       C    T    E         I +C S+PC N+G C+     F  V 
Sbjct:   463 GICVNTPGSYR-CNCSQGFTGPRCET-------NINECESHPCQNEGSCLDDPGTFRCVC 514

Query:   121 IQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----------EIGDCSSNPC 170
             +  + G  CE+ +I +C SNPCLNDG C D   G  C              I DC S PC
Sbjct:   515 MPGFTGTQCEI-DIDECQSNPCLNDGTCHDKINGFKCSCALGFTGARCQINIDDCQSQPC 573

Query:   171 LNDGVCVDVYKGRYWELP----------EIRDCTSNPCLNDGVCVDEVYKGRYWELPEIR 220
              N G+C D   G   E P           I DC SNPC + G C+D+V   +    P   
Sbjct:   574 RNRGICHDSIAGYSCECPPGYTGTSCEININDCDSNPC-HRGKCIDDVNSFKCLCDPGYT 632

Query:   221 DCTSNPCLNDCV-NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCP 279
                    +N+C  NPCQ  G C +D  G+Y C C A  +G  C+    V++     C   
Sbjct:   633 GYICQKQINECESNPCQFDGHC-QDRVGSYYCQCQAGTSGKNCEVN--VNE-----CHSN 684

Query:   280 PTYGGKNC--SVELTGCVGPDTCLNGGT---CKPYLVDE---TQHRFNCTCPSGYHGKIC 331
             P   G  C   +    C     C+ G T   C+   VDE   +    N  C    +G  C
Sbjct:   685 PCNNGATCIDGINSYKC----QCVPGFTGQHCEKN-VDECISSPCANNGVCIDQVNGYKC 739

Query:   332 EKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECE 391
             E   C  GF   HC  D DEC SNPC N   C++ IN + C C PGY+GK C ++I+EC 
Sbjct:   740 E---CPRGFYDAHCLSDVDECASNPCVNEGRCEDGINEFICHCPPGYTGKRCELDIDECS 796

Query:   392 SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
             S+PC HG TC D++  FSC C  G TG+ CETNIDDC
Sbjct:   797 SNPCQHGGTCYDKLNAFSCQCMPGYTGQKCETNIDDC 833

GO:0007498 "mesoderm development" evidence=IMP

GO:0007398 "ectoderm development" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005622 "intracellular" evidence=NAS;IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP;TAS

GO:0030707 "ovarian follicle cell development" evidence=IMP;TAS

GO:0001708 "cell fate specification" evidence=NAS;TAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0009952 "anterior/posterior pattern specification" evidence=TAS

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0007478 "leg disc morphogenesis" evidence=TAS

GO:0061382 "Malpighian tubule tip cell differentiation" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004872 "receptor activity" evidence=NAS;TAS

GO:0045165 "cell fate commitment" evidence=NAS

GO:0007424 "open tracheal system development" evidence=TAS

GO:0035155 "negative regulation of terminal cell fate specification, open tracheal system" evidence=TAS

GO:0035157 "negative regulation of fusion cell fate specification" evidence=TAS

GO:0007446 "imaginal disc growth" evidence=TAS

GO:0007447 "imaginal disc pattern formation" evidence=TAS

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS;TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;TAS

GO:0045463 "R8 cell development" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0007460 "R8 cell fate commitment" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=IMP;TAS

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0007293 "germarium-derived egg chamber formation" evidence=IMP;TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=NAS

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=TAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=TAS

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=TAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=NAS;TAS

GO:0048749 "compound eye development" evidence=NAS;TAS

GO:0007423 "sensory organ development" evidence=IMP

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=NAS

GO:0046667 "compound eye retinal cell programmed cell death" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045465 "R8 cell differentiation" evidence=NAS

GO:0045468 "regulation of R8 cell spacing in compound eye" evidence=NAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP;NAS

GO:0007450 "dorsal/ventral pattern formation, imaginal disc" evidence=TAS

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0046331 "lateral inhibition" evidence=IMP;NAS;TAS

GO:0046329 "negative regulation of JNK cascade" evidence=NAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=NAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035171 "lamellocyte differentiation" evidence=IMP

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0035172 "hemocyte proliferation" evidence=IMP

GO:0035167 "larval lymph gland hemopoiesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007464 "R3/R4 cell fate commitment" evidence=NAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0007473 "wing disc proximal/distal pattern formation" evidence=TAS

GO:0042689 "regulation of crystal cell differentiation" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0007419 "ventral cord development" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0007521 "muscle cell fate determination" evidence=IMP

GO:0042686 "regulation of cardioblast cell fate specification" evidence=IMP

GO:0045466 "R7 cell differentiation" evidence=IMP;TAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=TAS

GO:0035170 "lymph gland crystal cell differentiation" evidence=TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=IMP

GO:0035165 "embryonic crystal cell differentiation" evidence=TAS

GO:0040008 "regulation of growth" evidence=IGI;IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007440 "foregut morphogenesis" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI;IMP;TAS

GO:0007615 "anesthesia-resistant memory" evidence=IMP

GO:0048542 "lymph gland development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IDA;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0045316 "negative regulation of compound eye photoreceptor development" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0035003 "subapical complex" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0035153 "epithelial cell type specification, open tracheal system" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0050767 "regulation of neurogenesis" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0048052 "R1/R6 cell differentiation" evidence=IMP

GO:0035214 "eye-antennal disc development" evidence=IMP

GO:0007400 "neuroblast fate determination" evidence=IDA

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0051489 "regulation of filopodium assembly" evidence=IMP

GO:0016348 "imaginal disc-derived leg joint morphogenesis" evidence=IMP

GO:0048803 "imaginal disc-derived male genitalia morphogenesis" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0060288 "formation of a compartment boundary" evidence=IMP

UNIPROTKB|F6XUN7 CRB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 1.0e-53, Sum P(2) = 1.0e-53
 Identities = 146/454 (32%), Positives = 192/454 (42%)

Query:     7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQI 66
             ++ +PC +  NPCQ    C  +  G     C      C  G +  T     CET I   +
Sbjct:    97 NMRNPCFS--NPCQGNATC-VNNPGERSFLCK-----CPPGFSGTT-----CETAI---V 140

Query:    67 CTTAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFD-- 118
                  PC +G  C       +  CVCP GY       ++ +C S+PC N  +C    +  
Sbjct:   141 YCGINPCQHGGICHQDPVHPI--CVCPDGYFGRFCENDLDECASSPCHNGAMCQDGINGY 198

Query:   119 --VTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
                 +  Y+GR C+L E+ +C S+PC N+  C++   GRY             C    +C
Sbjct:   199 SCFCVPGYQGRLCDL-EVDECVSDPCKNEATCLNEI-GRYT------------C----IC 240

Query:   177 VDVYKGRYWELPEIRDCTSNPCLNDGVCVD--EVY--------KGRYWELPEIRDCTSNP 226
                Y G   E+ E+ +C S PC N   C D  E Y         G   EL    +C S P
Sbjct:   241 PRDYSGVNCEV-EVDECQSQPCRNGATCRDALEAYFCDCSPGFLGYDCEL-NADECASQP 298

Query:   227 CLND--CVNPCQNGGKCNEDETGNYDCTCDALHT---GDPC-KHGSCVDKRAGYFCDCPP 280
             CL+   CV+   N   CN   +G     C+ L      +PC  + +C D    Y C C P
Sbjct:   299 CLHGGLCVDG-YNSYSCNCTGSGFTGTHCETLMPLCWSEPCHNNATCEDSADNYTCHCWP 357

Query:   281 TYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK--CFCRP 338
              Y G  C   +  C G + C +GGTC   L  E  +      PS +         C C P
Sbjct:   358 GYTGAQCETYINECNG-NPCQSGGTCIE-LSPEKPYGHLAQLPSSFSDPEASGYVCICPP 415

Query:   339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA----PG--YSGKECSININECES 392
             G  G HC+ D DEC SNPC NG TC+N    YTC C      G  Y GK CS  +  C  
Sbjct:   416 GLTGIHCEEDIDECSSNPCQNGGTCENLSGHYTCRCPFDNHSGTFYGGKNCSDVLLGCTR 475

Query:   393 SPCLHGATCIDEVAT----FSCVCPKGLTGRLCE 422
               CL+   CI         FSC+CP G TG LCE
Sbjct:   476 HQCLNNGMCIPHFQNGQHGFSCLCPSGYTGPLCE 509

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1Q0H7 CRB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 146/454 (32%), Positives = 192/454 (42%)

Query:     7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQI 66
             ++ +PC +  NPCQ    C  +  G     C      C  G +  T     CET I   +
Sbjct:    69 NMRNPCFS--NPCQGNATC-VNNPGERSFLCK-----CPPGFSGTT-----CETAI---V 112

Query:    67 CTTAPPCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFD-- 118
                  PC +G  C       +  CVCP GY       ++ +C S+PC N  +C    +  
Sbjct:   113 YCGINPCQHGGICHQDPVHPI--CVCPDGYFGRFCENDLDECASSPCHNGAMCQDGINGY 170

Query:   119 --VTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
                 +  Y+GR C+L E+ +C S+PC N+  C++   GRY             C    +C
Sbjct:   171 SCFCVPGYQGRLCDL-EVDECVSDPCKNEATCLNEI-GRYT------------C----IC 212

Query:   177 VDVYKGRYWELPEIRDCTSNPCLNDGVCVD--EVY--------KGRYWELPEIRDCTSNP 226
                Y G   E+ E+ +C S PC N   C D  E Y         G   EL    +C S P
Sbjct:   213 PRDYSGVNCEV-EVDECQSQPCRNGATCRDALEAYFCDCSPGFLGYDCEL-NADECASQP 270

Query:   227 CLND--CVNPCQNGGKCNEDETGNYDCTCDALHT---GDPC-KHGSCVDKRAGYFCDCPP 280
             CL+   CV+   N   CN   +G     C+ L      +PC  + +C D    Y C C P
Sbjct:   271 CLHGGLCVDG-YNSYSCNCTGSGFTGTHCETLMPLCWSEPCHNNATCEDSADNYTCHCWP 329

Query:   281 TYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK--CFCRP 338
              Y G  C   +  C G + C +GGTC   L  E  +      PS +         C C P
Sbjct:   330 GYTGAQCETYINECNG-NPCQSGGTCIE-LSPEKPYGHLAQLPSSFSDPEASGYVCICPP 387

Query:   339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA----PG--YSGKECSININECES 392
             G  G HC+ D DEC SNPC NG TC+N    YTC C      G  Y GK CS  +  C  
Sbjct:   388 GLTGIHCEEDIDECSSNPCQNGGTCENLSGHYTCRCPFDNHSGTFYGGKNCSDVLLGCTR 447

Query:   393 SPCLHGATCIDEVAT----FSCVCPKGLTGRLCE 422
               CL+   CI         FSC+CP G TG LCE
Sbjct:   448 HQCLNNGMCIPHFQNGQHGFSCLCPSGYTGPLCE 481

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-990415-183 notch1b "notch homolog 1b" [Danio rerio (taxid:7955)]

 Score = 580 (209.2 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 158/466 (33%), Positives = 199/466 (42%)

Query:    13 DAQRNPCQNGGKCNEDETGNYDCTCDALHTV--C------CVG--LANQ------TLG-S 55
             + + NPC NGG C +D T  Y CTC A  +   C      C      NQ        G  
Sbjct:   776 ECESNPCMNGGTC-KDMTSGYVCTCRAGFSGPNCQTNINECASNPCLNQGTCIDDVAGYK 834

Query:    56 IHCETPISNQICTT------APPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCT 103
              +C  P + Q C          PC N A C+  +    Y+C C  GY       +I DC 
Sbjct:   835 CNCLLPYTGQTCEVDINECVKNPCRNDAICQNSIGS--YKCSCKAGYTGRNCETDIDDCK 892

Query:   104 SNPCLNDGVC---VWMFDVT-IQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCEL 159
              NPC N G C   V  F  T +  ++G  CE  +I +C SNPC N   C D      C  
Sbjct:   893 PNPCSNGGFCKDAVNAFACTCLPGFRGGRCE-EDINECESNPCKNGANCTDCVNSYTCTC 951

Query:   160 PEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEI 219
             P     S   C N+              P   DCT + C N G CVD +        P  
Sbjct:   952 PP--GFSGIHCENN-------------TP---DCTESSCFNGGTCVDGINSFTCL-CP-- 990

Query:   220 RDCTSNPC---LNDCVN-PCQNGGKCNEDETGNYDCTCDALHTG------------DPCK 263
             +  T N C   +N+C + PC NGG C +D  G Y CTC   + G             PCK
Sbjct:   991 KGFTGNYCQHDINECDSRPCMNGGTC-QDSYGTYKCTCPQGYHGLNCQELVNWCKPSPCK 1049

Query:   264 HGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTC 322
             +G  C      Y C C   + G  C V    C         G     +V   ++   C  
Sbjct:  1050 NGGICRQSGTRYSCQCQTGWTGLYCDVPSVSC--EVAAKQQGVD---VVRLCRNSGQCLD 1104

Query:   323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE 382
                 H      C C+ G+ G +C+   DEC+ NPC NGATC + + GY+C C PGY G  
Sbjct:  1105 AGNTH-----YCHCQAGYTGSYCEEQVDECIPNPCQNGATCTDYLGGYSCECVPGYHGVN 1159

Query:   383 CSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
             CS  INEC S PC +G TCID + T+ C CP+G  G  CE NIDDC
Sbjct:  1160 CSDEINECLSQPCQNGGTCIDLINTYKCSCPRGTQGVHCEINIDDC 1205

GO:0030154 "cell differentiation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IMP

GO:0001946 "lymphangiogenesis" evidence=IMP

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IGI

GO:0021654 "rhombomere boundary formation" evidence=IGI

FB|FBgn0259685 crb "crumbs" [Drosophila melanogaster (taxid:7227)]

 Score = 518 (187.4 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 142/458 (31%), Positives = 194/458 (42%)

Query:    10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS-NQICT 68
             SPC   +NPC+NGG C E+  G+Y C CD  H+           G  HCET ++ + +C 
Sbjct:   306 SPC--AKNPCENGGSCLENSRGDYQCFCDPNHS-----------GQ-HCETEVNIHPLCQ 351

Query:    69 TAPPCLNGATCRPQLTEQLYECVCPPGYKEIR------DCTSNPCLNDGVCV-----WMF 117
             T P CLN   C          C CP GY   R      +C S PC N+G C+     +  
Sbjct:   352 TNP-CLNNGACVVIGGSGALTCECPKGYAGARCEVDTDECASQPCQNNGSCIDRINGFSC 410

Query:   118 DVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCEL-----PEIGD----CSSN 168
             D +   Y G +C+   + +C  NPCLN G C D Y    C+       EI D    C + 
Sbjct:   411 DCSGTGYTGAFCQT-NVDECDKNPCLNGGRCFDTYGWYTCQCLDGWGGEICDRPMTCQTQ 469

Query:   169 PCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCL 228
              CLN G C+D   G          C   P     +C  ++      + P   +C    C+
Sbjct:   470 QCLNGGTCLDKPIGF--------QCLCPPEYTGELC--QIAPSCAQQCPIDSECVGGKCV 519

Query:   229 NDCVNPCQNGGKCNEDETGN-------YDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPT 281
               C  P  +G  C +  TG+           C+A  T   C +G       G  C C   
Sbjct:   520 --C-KPGSSGYNC-QTSTGDGASALALTPINCNA--TNGKCLNGGTCSMN-GTHCYCAVG 572

Query:   282 YGGKNCSVELTGCVGPDTCLNGGTC--KPYLVDETQHRFNCTCPSGYHGKICE------- 332
             Y G  C  +   C  P  C     C     L  E +    C      +G  C        
Sbjct:   573 YSGDRCE-KAENC-SPLNCQEPMVCVQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDY 630

Query:   333 KCFCRPGFAGDHCDVDFDECLSNP--CFNGATCQNKINGYTCVCAPGYSGKECSININEC 390
             +C C  G+ G  C  D DEC  +P  C NG  C+N+   Y C C PG++G  C  +++EC
Sbjct:   631 ECKCTRGWTGRTCGNDVDECTLHPKICGNGI-CKNEKGSYKCYCTPGFTGVHCDSDVDEC 689

Query:   391 ESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
              S PCL+GATC +++  + CVC  G  G  CE +ID+C
Sbjct:   690 LSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDEC 727

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS;IMP

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016324 "apical plasma membrane" evidence=NAS;IDA;TAS

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS;TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0042052 "rhabdomere development" evidence=NAS;IMP

GO:0045186 "zonula adherens assembly" evidence=IMP;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0016327 "apicolateral plasma membrane" evidence=IDA;IPI

GO:0005913 "cell-cell adherens junction" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0045218 "zonula adherens maintenance" evidence=NAS;IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP;TAS

GO:0045494 "photoreceptor cell maintenance" evidence=NAS;IMP

GO:0016044 "cellular membrane organization" evidence=IMP;TAS

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0030507 "spectrin binding" evidence=TAS

GO:0035003 "subapical complex" evidence=TAS

GO:0005918 "septate junction" evidence=TAS

GO:0007431 "salivary gland development" evidence=TAS

GO:0008104 "protein localization" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0034332 "adherens junction organization" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0061336 "cell morphogenesis involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0016028 "rhabdomere" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0042327 "positive regulation of phosphorylation" evidence=IMP

GO:0035330 "regulation of hippo signaling cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IMP

GO:0035002 "liquid clearance, open tracheal system" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	429
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	8e-07
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	1e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	2e-05
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.002

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 348 DFDECLS-NPCFNGATCQNKINGYTCVCAPGYSGKEC 383
           D DEC S NPC NG TC N +  Y C C PGY+G+ C
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 348 DFDECLS-NPCFNGATCQNKINGYTCVCAPGYS-GKEC 383
           D DEC S NPC NG TC N +  Y C C PGY+ G+ C
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38

Length = 39

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 386 NINECES-SPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           +I+EC S +PC +G TC++ V ++ C CP G TGR CE
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 386 NINECES-SPCLHGATCIDEVATFSCVCPKGLT-GRLCE 422
           +I+EC S +PC +G TC++ V ++ C CP G T GR CE
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 17/29 (58%), Positives = 18/29 (62%)

Query: 353 LSNPCFNGATCQNKINGYTCVCAPGYSGK 381
            SNPC NG TC N    Y CVC PGY+G 
Sbjct: 4   ASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
KOG4289|consensus	2531		99.76
KOG4289|consensus	2531		99.71
KOG1217|consensus	487		99.55
KOG1217|consensus	487		99.5
KOG1219|consensus	4289		99.47
KOG1219|consensus	4289		99.46
KOG1214|consensus	1289		99.29
KOG0994|consensus	1758		99.26
KOG1214|consensus	1289		99.13
KOG1225|consensus	525		98.96
KOG0994|consensus	1758		98.8
KOG1225|consensus	525		98.76
KOG4260|consensus	350		98.58
KOG1836|consensus	1705		98.35
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.29
KOG1226|consensus	783		98.17
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.92
KOG4260|consensus	350		97.89
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.82
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.81
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.78
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.77
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.7
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.64
KOG1226|consensus	783		97.47
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.41
KOG1836|consensus	1705		97.39
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.13
smart00181	35	EGF Epidermal growth factor-like domain.	97.05
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.82
PF12662	24	cEGF: Complement Clr-like EGF-like	96.81
smart00181	35	EGF Epidermal growth factor-like domain.	96.8
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.47
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.38
PF12662	24	cEGF: Complement Clr-like EGF-like	95.98
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	95.64
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.56
KOG3512|consensus	592		95.36
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	95.06
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	94.87
KOG1218|consensus	316		94.45
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	93.38
smart00051	63	DSL delta serrate ligand.	92.62
KOG3512|consensus	592		92.38
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	92.35
KOG1218|consensus	316		92.02
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	90.86
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	90.56
smart00051	63	DSL delta serrate ligand.	90.09
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	89.19
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	89.13
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	88.22
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	85.7
PHA02887	126	EGF-like protein; Provisional	84.72
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	84.05
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	83.84
PHA02887	126	EGF-like protein; Provisional	82.83
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	82.25
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	82.23
KOG3516|consensus	1306		80.46

>KOG4289|consensus

Probab=99.76  E-value=8.6e-18  Score=175.96  Aligned_cols=115  Identities=30%  Similarity=0.693  Sum_probs=72.5

Q ss_pred             CCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCc---ccccCCCccCC-CCccCCCcCCCCCc-CCCCccccC
Q psy11059        292 TGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE---KCFCRPGFAGD-HCDVDFDECLSNPC-FNGATCQNK  366 (429)
Q Consensus       292 ~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~---~C~C~~g~~g~-~C~~~i~~C~~~~C-~~~~~C~~~  366 (429)
                      +.|.- ++|.+.++|...   +...+|.|.|++||.|..|+   .=.|+.||+|. .|    ..|.-..- .....|..+
T Consensus      1717 ~vC~l-npc~~~g~Cv~s---p~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~C----gpC~CavsKgfdp~CnKt 1788 (2531)
T KOG4289|consen 1717 DVCSL-NPCENQGTCVRS---PGAHGYTCECPPGYTGPYCELRADQPCPRGWWGFPTC----GPCNCAVSKGFDPDCNKT 1788 (2531)
T ss_pred             chhcc-cccccCceeecC---CCCCceeEECCCcccCcchhhhccCCCCCcccCCCCc----cCccccccCCCCCCcccc
Confidence            34544 889999999632   24578999999999999998   34689999985 22    11210000 123456666


Q ss_pred             CCceEEecCCCCCCCCccCCCCCCCCCCCCCCC---EEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        367 INGYTCVCAPGYSGKECSININECESSPCLHGA---TCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       367 ~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~---~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      .|  .|.|+..+.-.     +..|.+..|..++   +|.   ...+|.|++|-.|+.|+.-
T Consensus      1789 ~G--~CqCKe~hy~~-----~~~Cl~CdC~~Gs~Sr~C~---adGqC~C~pgaiGRqCdrC 1839 (2531)
T KOG4289|consen 1789 NG--QCQCKENHYRP-----IGSCLPCDCYFGSDSRECD---ADGQCPCKPGAIGRQCDRC 1839 (2531)
T ss_pred             Cc--ceeeccccccC-----CCcceeeccccCCCccccc---CCCcCCCCCcccccccccc
Confidence            55  78888765321     2223433344332   353   4558999999999988753

>KOG4289|consensus

Probab=99.71  E-value=2e-16  Score=165.99  Aligned_cols=90  Identities=36%  Similarity=0.801  Sum_probs=79.3

Q ss_pred             CCCCCCCCCCCCCCCEecc---------------------CCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNE---------------------DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQIC   67 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~---------------------~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C   67 (429)
                      .+-|  ...||.|..+|+.                     ...+.++|.|++||+            |.+||+.+|  +|
T Consensus      1179 DniC--lrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFT------------gd~CeTeiD--lC 1242 (2531)
T KOG4289|consen 1179 DNIC--LREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFT------------GDYCETEID--LC 1242 (2531)
T ss_pred             Cchh--hcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCC------------cccccchhH--hh
Confidence            5679  8999999999985                     234578999999999            999999999  99


Q ss_pred             CCCCCCCCCCeEeeCCCCCCeeeeCCCCCc--------ccCCCCCCCCCCCCeEecCC
Q psy11059         68 TTAPPCLNGATCRPQLTEQLYECVCPPGYK--------EIRDCTSNPCLNDGVCVWMF  117 (429)
Q Consensus        68 ~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~--------~~~~C~~~~C~~~g~C~~~~  117 (429)
                      . +.+|.++|+|.  ...+.|+|.|.+||+        ....|.+..|.++|+|++..
T Consensus      1243 Y-s~pC~nng~C~--srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~ 1297 (2531)
T KOG4289|consen 1243 Y-SGPCGNNGRCR--SREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLL 1297 (2531)
T ss_pred             h-cCCCCCCCceE--EecCceeEEecCCccccceeeecccCccccceecCCCEEeecC
Confidence            9 99999999999  999999999999998        34568888899999998765

>KOG1217|consensus

Probab=99.55  E-value=1.3e-12  Score=133.70  Aligned_cols=212  Identities=38%  Similarity=0.991  Sum_probs=159.4

Q ss_pred             eecCCcccCCcccCCCCCCC--CCCCCCCCEEeeCCCCe-eeccCCCC--CCCCCCCCCCCCCCCCCCCcEeccCCCCCe
Q psy11059        175 VCVDVYKGRYWELPEIRDCT--SNPCLNDGVCVDEVYKG-RYWELPEI--RDCTSNPCLNDCVNPCQNGGKCNEDETGNY  249 (429)
Q Consensus       175 ~C~~~~~G~~c~~~~~~~C~--~~~C~~~~~C~~~~~~~-C~C~~~g~--~~C~~~~C~~~~c~~C~~~g~C~~~~~~~~  249 (429)
                      .|..+|.+..++. ..++|.  ..+|.++++|.+..++| |.| +++.  ..+...          .++++| ...   +
T Consensus       155 ~C~~g~~~~~~~~-~~~~C~~~~~~c~~~~~C~~~~~~~~C~c-~~~~~~~~~~~~----------~~~~~c-~~~---~  218 (487)
T KOG1217|consen  155 SCTEGYEGEPCET-DLDECIQYSSPCQNGGTCVNTGGSYLCSC-PPGYTGSTCETT----------GNGGTC-VDS---V  218 (487)
T ss_pred             eeCCCcccccccc-cccccccCCCCcCCCcccccCCCCeeEeC-CCCccCCcCcCC----------CCCceE-ecc---e
Confidence            3999999999886 557898  35699999999999999 999 8772  222211          234567 222   6


Q ss_pred             eEeCCCCCcCCCCCC---------CccccCCCCeeeeCCCCCCCCC--CccCCCCCCCCCCCCCCCeeCCccccCCCCCe
Q psy11059        250 DCTCDALHTGDPCKH---------GSCVDKRAGYFCDCPPTYGGKN--CSVELTGCVGPDTCLNGGTCKPYLVDETQHRF  318 (429)
Q Consensus       250 ~C~C~~g~~G~~C~~---------~~C~~~~~~~~C~C~~G~~g~~--c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~  318 (429)
                      .|.+..++.+..|+.         +.|++..++|+|.|++||.+..  ...+++.|....+|.++++|    .+ ..+.|
T Consensus       219 ~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C----~~-~~~~~  293 (487)
T KOG1217|consen  219 ACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTC----VN-VPGSY  293 (487)
T ss_pred             eccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCee----ec-CCCcc
Confidence            789999999887765         5688888899999999999886  23456788873348888999    44 55559


Q ss_pred             eeeCCCCccCCCCcccccCCCccCCCCccCCCcC----CCCCcCCCCcc--ccCCCceEEecCCCCCCCCccCCCCCCCC
Q psy11059        319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDEC----LSNPCFNGATC--QNKINGYTCVCAPGYSGKECSININECES  392 (429)
Q Consensus       319 ~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C----~~~~C~~~~~C--~~~~g~~~C~C~~G~~G~~C~~~~~~C~~  392 (429)
                      .|.|++||.|..+.           .+ .+..+|    ...+|.++++|  ....+.+.|.|..+|.|..|+...++|..
T Consensus       294 ~C~C~~g~~g~~~~-----------~~-~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~  361 (487)
T KOG1217|consen  294 RCTCPPGFTGRLCT-----------EC-VDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECAS  361 (487)
T ss_pred             eeeCCCCCCCCCCc-----------cc-cccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccC
Confidence            99999999988541           11 133445    33457777788  34445688999999999999744458998


Q ss_pred             CCCCCCCEEcc-CCCCeeeeCCCCCCCC
Q psy11059        393 SPCLHGATCID-EVATFSCVCPKGLTGR  419 (429)
Q Consensus       393 ~~C~~~~~C~~-~~~~~~C~C~~g~~G~  419 (429)
                      .++..++.|++ ..++|+|.++.+|.+.
T Consensus       362 ~~~~~~~~c~~~~~~~~~c~~~~~~~~~  389 (487)
T KOG1217|consen  362 SPCCPGGTCVNETPGSYRCACPAGFAGK  389 (487)
T ss_pred             CccccCCEeccCCCCCeEecCCCccccC
Confidence            88999999999 6889999999998874

>KOG1217|consensus

Probab=99.50  E-value=3.2e-12  Score=130.68  Aligned_cols=298  Identities=34%  Similarity=0.776  Sum_probs=194.0

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCC--CCCCCeEeeCCC---CCCee
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP--CLNGATCRPQLT---EQLYE   89 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~--C~~~g~C~~~~~---~~~~~   89 (429)
                      ...+....+.++ ....++.|.|++||.            |..|+...   +|. ..+  +...+.|.  ..   ...+.
T Consensus        93 ~~~~~~~~~~~~-~~~~~~~c~c~~g~~------------~~~~~~~~---~C~-~~~~~~~~~~~c~--~~~~~~~~~~  153 (487)
T KOG1217|consen   93 RSPCLLLCGECV-DCVGSYECTCPPGYQ------------GTPCEGEC---ECV-TGPGVCCIDGSCS--NGPGSVGPFR  153 (487)
T ss_pred             cCCcccCCcccc-CCCCCceeeCCCccc------------cCcCCcce---eec-CCCCCeeCchhhc--CCCCCCCcee
Confidence            344445566777 788899999999999            88776432   265 332  35557777  53   46899


Q ss_pred             eeCCCCCc------ccCCCC--CCCCCCCCeEecCCC---ce-eCCeeccCCCCCCCCCCCCCCCCCCCeEeeCCCCccc
Q psy11059         90 CVCPPGYK------EIRDCT--SNPCLNDGVCVWMFD---VT-IQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYC  157 (429)
Q Consensus        90 C~C~~Gy~------~~~~C~--~~~C~~~g~C~~~~~---C~-~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C  157 (429)
                      |.|..||.      ..++|.  ..+|.+++.|.+..+   |. +++|.|..|+. .         .+++.|++.   +.|
T Consensus       154 c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~-~---------~~~~~c~~~---~~~  220 (487)
T KOG1217|consen  154 CSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCET-T---------GNGGTCVDS---VAC  220 (487)
T ss_pred             eeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcC-C---------CCCceEecc---eec
Confidence            99999998      226887  556999999998876   89 99999999985 2         445566654   333


Q ss_pred             cCCCCCCCCCCCCCCCceecCCcccCCcccCCCCCCCCCCCCCCCEEeeCCCCe-eeccCCCC--CCC----CCCCCCCC
Q psy11059        158 ELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKG-RYWELPEI--RDC----TSNPCLND  230 (429)
Q Consensus       158 ~~~~~~~C~~~~C~~~~~C~~~~~G~~c~~~~~~~C~~~~C~~~~~C~~~~~~~-C~C~~~g~--~~C----~~~~C~~~  230 (429)
                      .                 +..+|.+..++. .+.++...   + ++|++..++| |.+ ++|.  ..+    ....|...
T Consensus       221 ~-----------------~~~g~~~~~c~~-~~~~~~~~---~-~~c~~~~~~~~C~~-~~g~~~~~~~~~~~~~~C~~~  277 (487)
T KOG1217|consen  221 S-----------------CPPGARGPECEV-SIVECASG---D-GTCVNTVGSYTCRC-PEGYTGDACVTCVDVDSCALI  277 (487)
T ss_pred             c-----------------CCCCCCCCCccc-ccccccCC---C-CcccccCCceeeeC-CCCccccccceeeeccccCCC
Confidence            3                 667788888887 77777655   4 8899988888 998 7772  221    11222211


Q ss_pred             CCCCCCCCcEeccCCCCCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCcc
Q psy11059        231 CVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYL  310 (429)
Q Consensus       231 ~c~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~  310 (429)
                      .  +|.++++| .+..+.|.|.|++||+|..|  ..+...     ..|.+.+.+             ..|.+++.|.   
T Consensus       278 ~--~c~~~~~C-~~~~~~~~C~C~~g~~g~~~--~~~~~~-----~~C~~~~~~-------------~~c~~g~~C~---  331 (487)
T KOG1217|consen  278 A--SCPNGGTC-VNVPGSYRCTCPPGFTGRLC--TECVDV-----DECSPRNAG-------------GPCANGGTCN---  331 (487)
T ss_pred             C--ccCCCCee-ecCCCcceeeCCCCCCCCCC--cccccc-----ccccccccC-------------CcCCCCcccc---
Confidence            1  27777788 55555577777777777766  111110     122222111             3355555551   


Q ss_pred             ccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCcccc-CCCceEEecCCCCCCC------Cc
Q psy11059        311 VDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQN-KINGYTCVCAPGYSGK------EC  383 (429)
Q Consensus       311 ~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~-~~g~~~C~C~~G~~G~------~C  383 (429)
                      .......+.|.|..+|.              |..|+...++|...++..++.|++ ..++|.|.++.+|.+.      .+
T Consensus       332 ~~~~~~~~~C~c~~~~~--------------g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~~~  397 (487)
T KOG1217|consen  332 TLGSFGGFRCACGPGFT--------------GRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGVGC  397 (487)
T ss_pred             cCCCCCCCCcCCCCCCC--------------CCccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccccc
Confidence            11133455666666655              445542225888888999999999 6899999999999874      12


Q ss_pred             cCCCCCCCCCCCCCCCEEccCCCCeeeeCCC
Q psy11059        384 SININECESSPCLHGATCIDEVATFSCVCPK  414 (429)
Q Consensus       384 ~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~  414 (429)
                       .++++|..     .+.|++..+++.|. .+
T Consensus       398 -~~~~~c~~-----~~~c~~~~~~~~c~-~~  421 (487)
T KOG1217|consen  398 -EDIDECSG-----CGDCVNGPGGGACT-PP  421 (487)
T ss_pred             -cccccccC-----CcceeccCCCCccc-cC
Confidence             24444443     55687788888888 66

>KOG1219|consensus

Probab=99.47  E-value=1e-13  Score=150.82  Aligned_cols=115  Identities=40%  Similarity=1.055  Sum_probs=103.4

Q ss_pred             CCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCCce
Q psy11059        291 LTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGY  370 (429)
Q Consensus       291 ~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~  370 (429)
                      .+.|.+ +||+++|+|    .....++|.|.|++-|.|.              +|+.++..|.++||..+++|+...++|
T Consensus      3864 ~d~C~~-npCqhgG~C----~~~~~ggy~CkCpsqysG~--------------~CEi~~epC~snPC~~GgtCip~~n~f 3924 (4289)
T KOG1219|consen 3864 TDPCND-NPCQHGGTC----ISQPKGGYKCKCPSQYSGN--------------HCEIDLEPCASNPCLTGGTCIPFYNGF 3924 (4289)
T ss_pred             cccccc-CcccCCCEe----cCCCCCceEEeCcccccCc--------------ccccccccccCCCCCCCCEEEecCCCe
Confidence            367888 999999999    4446678999988877655              555789999999999999999999999


Q ss_pred             EEecCCCCCCCCccCC-CCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        371 TCVCAPGYSGKECSIN-INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       371 ~C~C~~G~~G~~C~~~-~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      .|.|+.||+|.+|+.+ +++|..++|.++|.|++..|+|.|.|.+||.|..|...
T Consensus      3925 ~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~~ 3979 (4289)
T KOG1219|consen 3925 LCNCPNGYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCAE 3979 (4289)
T ss_pred             eEeCCCCccCceeecccccccccccccCCceeeccCCceEeccChhHhcccCccc
Confidence            9999999999999988 99999999999999999999999999999999998643

>KOG1219|consensus

Probab=99.46  E-value=1e-13  Score=150.83  Aligned_cols=114  Identities=37%  Similarity=0.885  Sum_probs=103.3

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCe
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLY   88 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~   88 (429)
                      .|+|  ..+||+++|+|+....|.|+|.|++-|+            |..||+++.  +|. ++||..+|+|+  ...+.|
T Consensus      3864 ~d~C--~~npCqhgG~C~~~~~ggy~CkCpsqys------------G~~CEi~~e--pC~-snPC~~GgtCi--p~~n~f 3924 (4289)
T KOG1219|consen 3864 TDPC--NDNPCQHGGTCISQPKGGYKCKCPSQYS------------GNHCEIDLE--PCA-SNPCLTGGTCI--PFYNGF 3924 (4289)
T ss_pred             cccc--ccCcccCCCEecCCCCCceEEeCccccc------------Ccccccccc--ccc-CCCCCCCCEEE--ecCCCe
Confidence            4889  7999999999995556889999999999            999999999  999 99999999999  888999


Q ss_pred             eeeCCCCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCC-CCCCCCCCCCCCCeEeeCCCCccccCCCCCCCCC
Q psy11059         89 ECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPE-IGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSS  167 (429)
Q Consensus        89 ~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~-i~~C~~~~C~~~g~C~~~~~g~~C~~~~~~~C~~  167 (429)
                      .|.|+.|                            |+|.+||. + |++|..++|.++|.|++..+.+.|.         
T Consensus      3925 ~CnC~~g----------------------------yTG~~Ce~-~Gi~eCs~n~C~~gg~C~n~~gsf~Cn--------- 3966 (4289)
T KOG1219|consen 3925 LCNCPNG----------------------------YTGKRCEA-RGISECSKNVCGTGGQCINIPGSFHCN--------- 3966 (4289)
T ss_pred             eEeCCCC----------------------------ccCceeec-ccccccccccccCCceeeccCCceEec---------
Confidence            9999877                            77888988 5 9999999999999999999999998         


Q ss_pred             CCCCCCceecCCcccCCccc
Q psy11059        168 NPCLNDGVCVDVYKGRYWEL  187 (429)
Q Consensus       168 ~~C~~~~~C~~~~~G~~c~~  187 (429)
                              |..+|.|..|..
T Consensus      3967 --------cT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3967 --------CTPGILGRTCCA 3978 (4289)
T ss_pred             --------cChhHhcccCcc
Confidence                    888898888754

>KOG1214|consensus

Probab=99.29  E-value=2.2e-10  Score=116.35  Aligned_cols=129  Identities=22%  Similarity=0.462  Sum_probs=71.4

Q ss_pred             CeeeeCCCCCCCC--CCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCcc-CCCCccCC
Q psy11059        273 GYFCDCPPTYGGK--NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFA-GDHCDVDF  349 (429)
Q Consensus       273 ~~~C~C~~G~~g~--~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~-g~~C~~~i  349 (429)
                      .|.|.|.|||.|+  .|. +.++|.+ +.|...++|    ++ +.+++.|+|.+||.|+.-   +|.|+-. -..|+...
T Consensus       808 ~y~C~CLPGfsGDG~~c~-dvDeC~p-srChp~A~C----yn-tpgsfsC~C~pGy~GDGf---~CVP~~~~~T~C~~er  877 (1289)
T KOG1214|consen  808 TYSCACLPGFSGDGHQCT-DVDECSP-SRCHPAATC----YN-TPGSFSCRCQPGYYGDGF---QCVPDTSSLTPCEQER  877 (1289)
T ss_pred             eEEEeecCCccCCccccc-cccccCc-cccCCCceE----ec-CCCcceeecccCccCCCc---eecCCCccCCcccccc
Confidence            4666666666554  333 5588887 899999999    66 889999999999998721   2333311 11232110


Q ss_pred             CcCCCCCcCCCCccc--cCCCceEEecCCCCCC---CCccCCCCCCCCCCCCCCCEEccC---CCCeeeeCCC
Q psy11059        350 DECLSNPCFNGATCQ--NKINGYTCVCAPGYSG---KECSININECESSPCLHGATCIDE---VATFSCVCPK  414 (429)
Q Consensus       350 ~~C~~~~C~~~~~C~--~~~g~~~C~C~~G~~G---~~C~~~~~~C~~~~C~~~~~C~~~---~~~~~C~C~~  414 (429)
                      -  -+..|...+.+.  ..+.+|.+.+.++-.|   ..|. .+.+=---.|..++.+..+   ..+++|+|..
T Consensus       878 ~--hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~-~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd  947 (1289)
T KOG1214|consen  878 F--HPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCG-PSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVD  947 (1289)
T ss_pred             c--cceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCC-CcccccCCCccccccccccccCCCcceeEEec
Confidence            0  011255444332  1345678887766555   3453 1111011235555555433   2247788865

>KOG0994|consensus

Probab=99.26  E-value=8.6e-11  Score=122.53  Aligned_cols=99  Identities=30%  Similarity=0.804  Sum_probs=62.2

Q ss_pred             CCCCeeeeCCCCccCCCCcccccCCCcc----CCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccC----
Q psy11059        314 TQHRFNCTCPSGYHGKICEKCFCRPGFA----GDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI----  385 (429)
Q Consensus       314 ~~~~~~C~C~~G~~G~~C~~C~C~~g~~----g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~----  385 (429)
                      ...+++|.|.+...|.+|+  .|.+.++    |..|+    .|.-+| ..+.+|....|  .|.|++||.|+.|..    
T Consensus      1033 Dr~tGQCpClpNv~G~~CD--qCA~N~w~laSG~GCe----~C~Cd~-~~~pqCN~ftG--QCqCkpGfGGR~C~qCqel 1103 (1758)
T KOG0994|consen 1033 DRFTGQCPCLPNVQGVRCD--QCAENHWNLASGEGCE----PCNCDP-IGGPQCNEFTG--QCQCKPGFGGRTCSQCQEL 1103 (1758)
T ss_pred             ccccCcCCCCccccccccc--ccccchhccccCCCCC----ccCCCc-cCCcccccccc--ceeccCCCCCcchhHHHHh
Confidence            4456788888888888888  5566654    55564    233222 23346766665  899999999998862    


Q ss_pred             ---CCC-CCCCCCCCCCC----EEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        386 ---NIN-ECESSPCLHGA----TCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       386 ---~~~-~C~~~~C~~~~----~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                         +.+ .|..-.|...|    .|..  .+.+|+|.+|..|.+|++
T Consensus      1104 ~WGdP~~~C~aCdCd~rG~~tpQCdr--~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1104 YWGDPNEKCRACDCDPRGIETPQCDR--ATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred             hcCCCCCCceecCCCCCCCCCCCccc--cCCceeecCCCCCcchhh
Confidence               111 23333344433    2322  245789999999988863

>KOG1214|consensus

Probab=99.13  E-value=2.9e-10  Score=115.54  Aligned_cols=143  Identities=22%  Similarity=0.544  Sum_probs=117.7

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGATCRPQLTEQ   86 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~~~   86 (429)
                      .+++|-.+++-|..++.|.....-.|+|.|..||.|+          |.+|. +++  +|+ ..+.|..+++|+  +.++
T Consensus       691 ~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gd----------gr~c~-d~~--eca~~~~~CGp~s~Ci--n~pg  755 (1289)
T KOG1214|consen  691 PVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGD----------GRNCV-DEN--ECATGFHRCGPNSVCI--NLPG  755 (1289)
T ss_pred             ccccceecCcccCCCccccCCCCcceEEEEeeccCCC----------CCCCC-Chh--hhccCCCCCCCCceee--cCCC
Confidence            4678877888899999999444557999999999988          99995 777  898 577899999999  9999


Q ss_pred             CeeeeCCCCCc---------------ccCCCCC--CCCCCCC--eEecCCC----ce-eCCeec--cCCCCCCCCCCCCC
Q psy11059         87 LYECVCPPGYK---------------EIRDCTS--NPCLNDG--VCVWMFD----VT-IQVYKG--RYCELPEIGDCSSN  140 (429)
Q Consensus        87 ~~~C~C~~Gy~---------------~~~~C~~--~~C~~~g--~C~~~~~----C~-~~g~~G--~~C~~~~i~~C~~~  140 (429)
                      +|+|.|..||.               .++.|..  ..|.-.|  .|+...+    |. .+||.|  ..|.  ++|+|..+
T Consensus       756 ~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~--dvDeC~ps  833 (1289)
T KOG1214|consen  756 SYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCT--DVDECSPS  833 (1289)
T ss_pred             ceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccc--cccccCcc
Confidence            99999999997               3445552  3454443  4555544    99 999986  5677  88999999


Q ss_pred             CCCCCCeEeeCCCCccccCCCCCCCCCCCCCCCceecCCcccCC
Q psy11059        141 PCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRY  184 (429)
Q Consensus       141 ~C~~~g~C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~  184 (429)
                      .|...++|++..+.+.|+                 |++||.|+.
T Consensus       834 rChp~A~CyntpgsfsC~-----------------C~pGy~GDG  860 (1289)
T KOG1214|consen  834 RCHPAATCYNTPGSFSCR-----------------CQPGYYGDG  860 (1289)
T ss_pred             ccCCCceEecCCCcceee-----------------cccCccCCC
Confidence            999999999999999998                 999999864

>KOG1225|consensus

Probab=98.96  E-value=3.4e-09  Score=106.35  Aligned_cols=126  Identities=33%  Similarity=0.815  Sum_probs=83.9

Q ss_pred             eeEeCCCCCcCCCCCCCccccCC------CCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeC
Q psy11059        249 YDCTCDALHTGDPCKHGSCVDKR------AGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTC  322 (429)
Q Consensus       249 ~~C~C~~g~~G~~C~~~~C~~~~------~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C  322 (429)
                      +.|.|+.+|.|..|+...|...-      ..-+|.|++||+|..|+.  ..|.. . |..++.+    +   .  ..|+|
T Consensus       234 ~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e--~~Cp~-~-cs~~g~~----~---~--g~CiC  300 (525)
T KOG1225|consen  234 GICECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDE--LVCPV-D-CSGGGVC----V---D--GECIC  300 (525)
T ss_pred             ceeecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCc--ccCCc-c-cCCCcee----c---C--CEeec
Confidence            36777777777777655554431      113577777777777743  34543 2 6555555    2   1  26666


Q ss_pred             CCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEc
Q psy11059        323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCI  402 (429)
Q Consensus       323 ~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~  402 (429)
                      ++||+|..|+                +..|. ..|.+++.|++.    +|.|.+||+|..|...       +|.+++.|+
T Consensus       301 ~~g~~G~dCs----------------~~~cp-adC~g~G~Ci~G----~C~C~~Gy~G~~C~~~-------~C~~~g~cv  352 (525)
T KOG1225|consen  301 NPGYSGKDCS----------------IRRCP-ADCSGHGKCIDG----ECLCDEGYTGELCIQR-------ACSGGGQCV  352 (525)
T ss_pred             CCCccccccc----------------cccCC-ccCCCCCcccCC----ceEeCCCCcCCccccc-------ccCCCceec
Confidence            6666655443                23343 459999999833    8999999999999643       388888885


Q ss_pred             cCCCCeeeeCCCCCCCCC
Q psy11059        403 DEVATFSCVCPKGLTGRL  420 (429)
Q Consensus       403 ~~~~~~~C~C~~g~~G~~  420 (429)
                      +.     |+|..||.|++
T Consensus       353 ~g-----C~C~~Gw~G~d  365 (525)
T KOG1225|consen  353 NG-----CKCKKGWRGPD  365 (525)
T ss_pred             cC-----ceeccCccCCC
Confidence            43     99999999987

>KOG0994|consensus

Probab=98.80  E-value=7.1e-08  Score=101.35  Aligned_cols=95  Identities=21%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             eEEecCCCCcccccccccCcCCC-CCCCCCCCCCCCC-CCCCCCC-CCeEee-CCCCCCeee-eCCCCCc------ccCC
Q psy11059         33 YDCTCDALHTVCCVGLANQTLGS-IHCETPISNQICT-TAPPCLN-GATCRP-QLTEQLYEC-VCPPGYK------EIRD  101 (429)
Q Consensus        33 ~~C~C~~g~~g~~~~~~~~~~~G-~~C~~~~~~~~C~-~~~~C~~-~g~C~~-~~~~~~~~C-~C~~Gy~------~~~~  101 (429)
                      .+|+|.+|-.|.++..|..+|=| +.|..-    .|. -.+.|.. -|.|+- .+....+.| .|..||+      ....
T Consensus       830 GQC~C~~g~ygrqCnqCqpG~WgFPeCr~C----qCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~  905 (1758)
T KOG0994|consen  830 GQCQCRPGTYGRQCNQCQPGYWGFPECRPC----QCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIG  905 (1758)
T ss_pred             cceeeccccchhhccccCCCccCCCcCccc----cccCcccccCccccccccccccccccchhhhhccccCCcccCCCCC
Confidence            46888888777777777776655 333311    121 0222322 244441 045566778 6999999      3467


Q ss_pred             CCCCCCCCCC--------eEecCCC-----ce-eCCeeccCCCC
Q psy11059        102 CTSNPCLNDG--------VCVWMFD-----VT-IQVYKGRYCEL  131 (429)
Q Consensus       102 C~~~~C~~~g--------~C~~~~~-----C~-~~g~~G~~C~~  131 (429)
                      |.+.||..+-        .|.-...     |. .+||+|.+|+.
T Consensus       906 CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~  949 (1758)
T KOG0994|consen  906 CRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI  949 (1758)
T ss_pred             CCCCCCCCCCccchhccccccccccccceeeecccCccccchhh
Confidence            8888887652        3543332     89 99999999984

>KOG1225|consensus

Probab=98.76  E-value=6.3e-08  Score=97.35  Aligned_cols=118  Identities=31%  Similarity=0.785  Sum_probs=85.6

Q ss_pred             cccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeC
Q psy11059          3 FKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQ   82 (429)
Q Consensus         3 ~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~   82 (429)
                      +.|....--|   ++-|.++|.|+     ..+|+|++||+            |.+|...    .|. .. |+.++.++  
T Consensus       243 ~g~~c~~~~C---~~~c~~~g~c~-----~G~CIC~~Gf~------------G~dC~e~----~Cp-~~-cs~~g~~~--  294 (525)
T KOG1225|consen  243 FGPLCSTIYC---PGGCTGRGQCV-----EGRCICPPGFT------------GDDCDEL----VCP-VD-CSGGGVCV--  294 (525)
T ss_pred             eCCccccccC---CCCCcccceEe-----CCeEeCCCCCc------------CCCCCcc----cCC-cc-cCCCceec--
Confidence            3444444445   66677778888     56899999999            9999753    366 33 88888888  


Q ss_pred             CCCCCeeeeCCCCCc----ccCCCCCCCCCCCCeEecCCCce-eCCeeccCCCCCCCCCCCCCCCCCCCeEeeCCCCccc
Q psy11059         83 LTEQLYECVCPPGYK----EIRDCTSNPCLNDGVCVWMFDVT-IQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYC  157 (429)
Q Consensus        83 ~~~~~~~C~C~~Gy~----~~~~C~~~~C~~~g~C~~~~~C~-~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C  157 (429)
                      +.    .|+|++||+    .+..|. .+|..+|.|+ ...|. .+||+|..|+. .       +|.+++.|++.     |
T Consensus       295 ~g----~CiC~~g~~G~dCs~~~cp-adC~g~G~Ci-~G~C~C~~Gy~G~~C~~-~-------~C~~~g~cv~g-----C  355 (525)
T KOG1225|consen  295 DG----ECICNPGYSGKDCSIRRCP-ADCSGHGKCI-DGECLCDEGYTGELCIQ-R-------ACSGGGQCVNG-----C  355 (525)
T ss_pred             CC----EeecCCCccccccccccCC-ccCCCCCccc-CCceEeCCCCcCCcccc-c-------ccCCCceeccC-----c
Confidence            32    699999998    334444 6699999999 33399 99999999985 2       37777787752     4


Q ss_pred             cCCCCCCCCCCCCCCCceecCCcccCC
Q psy11059        158 ELPEIGDCSSNPCLNDGVCVDVYKGRY  184 (429)
Q Consensus       158 ~~~~~~~C~~~~C~~~~~C~~~~~G~~  184 (429)
                      .                 |..||.|..
T Consensus       356 ~-----------------C~~Gw~G~d  365 (525)
T KOG1225|consen  356 K-----------------CKKGWRGPD  365 (525)
T ss_pred             e-----------------eccCccCCC
Confidence            4                 889999987

>KOG4260|consensus

Probab=98.58  E-value=1e-07  Score=85.72  Aligned_cols=131  Identities=29%  Similarity=0.749  Sum_probs=88.7

Q ss_pred             eCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCc------------------------
Q psy11059        277 DCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------------------------  332 (429)
Q Consensus       277 ~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~------------------------  332 (429)
                      -|++|.+|..|..-... + ..+|..++.|..  -..+.++..|.|.+||.|..|.                        
T Consensus       131 CCp~gtyGpdCl~Cpgg-s-er~C~GnG~C~G--dGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~  206 (350)
T KOG4260|consen  131 CCPDGTYGPDCLQCPGG-S-ERPCFGNGSCHG--DGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEG  206 (350)
T ss_pred             ccCCCCcCCccccCCCC-C-cCCcCCCCcccC--CCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhh
Confidence            36777777776421110 1 256777778742  1125688999999999999886                        


Q ss_pred             -----------cc-ccCCCccC--CCCccCCCcCCC--CCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCC--CC
Q psy11059        333 -----------KC-FCRPGFAG--DHCDVDFDECLS--NPCFNGATCQNKINGYTCVCAPGYSGKECSININECES--SP  394 (429)
Q Consensus       333 -----------~C-~C~~g~~g--~~C~~~i~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~--~~  394 (429)
                                 .| .|..||.-  ..| +||++|..  .||.....|+|+.|+|.|..++||.+.     +|+|..  ..
T Consensus       207 C~~~Csg~~~k~C~kCkkGW~lde~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g-----~d~C~~~~d~  280 (350)
T KOG4260|consen  207 CLGVCSGESSKGCSKCKKGWKLDEEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG-----VDECQFCADV  280 (350)
T ss_pred             hhcccCCCCCCChhhhcccceeccccc-ccHHHHhcCCCCCChhheeecCCCceEecccccccCC-----hHHhhhhhhh
Confidence                       12 24555542  234 48888864  568888899999999999999998762     444442  23


Q ss_pred             C-CCCCEEccCCCCeeeeCCCCCC
Q psy11059        395 C-LHGATCIDEVATFSCVCPKGLT  417 (429)
Q Consensus       395 C-~~~~~C~~~~~~~~C~C~~g~~  417 (429)
                      | ..+..|.++.+.|+|+|..++.
T Consensus       281 ~~~kn~~c~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  281 CASKNRPCMNIDGQYRCVCFSGLI  304 (350)
T ss_pred             cccCCCCcccCCccEEEEecccce
Confidence            3 2345688889999999988753

>KOG1836|consensus

Probab=98.35  E-value=1.2e-05  Score=91.41  Aligned_cols=135  Identities=27%  Similarity=0.594  Sum_probs=78.1

Q ss_pred             CCeee-eCCCCCCCCCCc-cCCCCCCCCCCCCCC------CeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCC
Q psy11059        272 AGYFC-DCPPTYGGKNCS-VELTGCVGPDTCLNG------GTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGD  343 (429)
Q Consensus       272 ~~~~C-~C~~G~~g~~c~-~~~~~C~~~~~C~~~------~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~  343 (429)
                      .+.+| .|.+||.|..-. ...+.|.. .-|...      .+|       ..-...|.|.+.-.|..|.  .|.+||++.
T Consensus       864 ~g~~cd~c~~g~~gd~l~~~p~~~c~~-c~c~p~gs~~~~~~c-------~~~tGQcec~~~v~g~~c~--~c~~g~fnl  933 (1705)
T KOG1836|consen  864 AGEYCDLCKEGYFGDPLAPNPEDKCFA-CGCVPAGSELPSLTC-------NPVTGQCECKPNVEGRDCL--YCFKGFFNL  933 (1705)
T ss_pred             ccccccccccCccccccCCCcCCcccc-ccCccCCcccccccC-------CCcccceeccCCCCccccc--ccccccccc
Confidence            33445 688888887543 12233433 223222      223       3456789999999999888  677888866


Q ss_pred             CCccCCCcCCCCCcCCC----CccccCCCceEEecCCCCCCCCccCC--------CCCCCCCCCCCCC----EEccCCCC
Q psy11059        344 HCDVDFDECLSNPCFNG----ATCQNKINGYTCVCAPGYSGKECSIN--------INECESSPCLHGA----TCIDEVAT  407 (429)
Q Consensus       344 ~C~~~i~~C~~~~C~~~----~~C~~~~g~~~C~C~~G~~G~~C~~~--------~~~C~~~~C~~~~----~C~~~~~~  407 (429)
                      .-   -..|+.-.|...    ..|....  ..|.|.+|-+|.+|..-        +..|..--|...|    .|...  .
T Consensus       934 ~s---~~gC~~c~c~~~gs~~~~c~~~t--Gqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~--~ 1006 (1705)
T KOG1836|consen  934 NS---GVGCEPCNCDPTGSESSDCDVGT--GQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPE--D 1006 (1705)
T ss_pred             CC---CCCcccccccccccccccccccC--CceeeecCccccccCccccCcccccccCCcceecccCCcccceeccc--C
Confidence            51   122333334322    2454444  48999999999887521        1112222243333    45432  3


Q ss_pred             eeeeCCCCCCCCCCCC
Q psy11059        408 FSCVCPKGLTGRLCET  423 (429)
Q Consensus       408 ~~C~C~~g~~G~~C~~  423 (429)
                      .+|.|+++|.|.+|..
T Consensus      1007 G~c~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 1007 GQCPCRPGFEGRRCDQ 1022 (1705)
T ss_pred             CeeeecCCCCCccccc
Confidence            4899999999987763

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.29  E-value=3.5e-07  Score=60.22  Aligned_cols=34  Identities=24%  Similarity=0.663  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      |||||+..+++|..+++|+ ++.|+|+|.|++||+
T Consensus         1 DidEC~~~~~~C~~~~~C~-N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCV-NTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEE-EETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEE-cCCCCEEeeCCCCcE
Confidence            5899998888999999999 999999999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1226|consensus

Probab=98.17  E-value=1.1e-05  Score=83.10  Aligned_cols=144  Identities=28%  Similarity=0.650  Sum_probs=84.9

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCccCCCCCCC---CCCCCCCCeeCCc
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVG---PDTCLNGGTCKPY  309 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~~~~~C~~---~~~C~~~~~C~~~  309 (429)
                      ..|+.+|+.     .-..|.|.+||.|..|+-.              ..-.... + ..+.|..   ..+|...|.|.  
T Consensus       467 ~~C~g~G~~-----~CG~C~C~~G~~G~~CEC~--------------~~~~ss~-~-~~~~Cr~~~~~~vCSgrG~C~--  523 (783)
T KOG1226|consen  467 ALCHGNGTF-----VCGQCRCDEGWLGKKCECS--------------TDELSSS-E-EEDKCRENSDSPVCSGRGDCV--  523 (783)
T ss_pred             cccCCCCcE-----EecceecCCCCCCCcccCC--------------ccccCcH-h-HHhhccCCCCCCCcCCCCcEe--
Confidence            356655554     2246888888888887632              1111110 0 0122321   13577777772  


Q ss_pred             cccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCC---CCcCCCCccccCCCceEEecCCCCCCCCcc--
Q psy11059        310 LVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLS---NPCFNGATCQNKINGYTCVCAPGYSGKECS--  384 (429)
Q Consensus       310 ~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~--  384 (429)
                             =++|+|.+...|.          ++|..|+-|--.|..   .-|..++.|.-.    +|+|.+||+|..|+  
T Consensus       524 -------CGqC~C~~~~~~~----------i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~~C~C~  582 (783)
T KOG1226|consen  524 -------CGQCVCHKPDNGK----------IYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWTGSACNCP  582 (783)
T ss_pred             -------CCceEecCCCCCc----------eeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCccCCCCCC
Confidence                   1356776655421          235566533333433   237788887654    79999999999875  


Q ss_pred             CCCCCCCCC---CCCCCCEEccCCCCeeeeCCCC-CCCCCCCCC
Q psy11059        385 ININECESS---PCLHGATCIDEVATFSCVCPKG-LTGRLCETN  424 (429)
Q Consensus       385 ~~~~~C~~~---~C~~~~~C~~~~~~~~C~C~~g-~~G~~C~~~  424 (429)
                      .+.+.|.+.   .|...|+|.-.    +|+|... |.|..||..
T Consensus       583 ~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~sG~~CE~c  622 (783)
T KOG1226|consen  583 LSTDTCESSDGQICSGRGTCECG----RCKCTDPPYSGEFCEKC  622 (783)
T ss_pred             CCCccccCCCCceeCCCceeeCC----ceEcCCCCcCcchhhcC
Confidence            455666542   47777777544    6888866 999999864

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.92  E-value=4.9e-06  Score=51.16  Aligned_cols=27  Identities=52%  Similarity=1.068  Sum_probs=25.0

Q ss_pred             CCCCCCCCCEeccCCC-CceEEecCCCCc
Q psy11059         15 QRNPCQNGGKCNEDET-GNYDCTCDALHT   42 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~-~~~~C~C~~g~~   42 (429)
                      .++||+|+|+|+ +.. ++|+|+|++||+
T Consensus         2 ~~~~C~n~g~C~-~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen    2 SSNPCQNGGTCI-DLPGGGYTCECPPGYT   29 (32)
T ss_dssp             TTTSSTTTEEEE-EESTSEEEEEEBTTEE
T ss_pred             CCCcCCCCeEEE-eCCCCCEEeECCCCCc
Confidence            578999999999 777 999999999999

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG4260|consensus

Probab=97.89  E-value=1.5e-05  Score=72.00  Aligned_cols=96  Identities=26%  Similarity=0.600  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCeEeeC-CCCCCeeeeCCCCCc--ccCCCCC-----------C---CCCC--CCeE
Q psy11059         55 SIHCETPISNQICT--TAPPCLNGATCRPQ-LTEQLYECVCPPGYK--EIRDCTS-----------N---PCLN--DGVC  113 (429)
Q Consensus        55 G~~C~~~~~~~~C~--~~~~C~~~g~C~~~-~~~~~~~C~C~~Gy~--~~~~C~~-----------~---~C~~--~g~C  113 (429)
                      |+.|.      .|.  +..+|..+|.|.-. ...|+..|.|.+||+  .-..|..           .   .|..  .++|
T Consensus       138 GpdCl------~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~C  211 (350)
T KOG4260|consen  138 GPDCL------QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVC  211 (350)
T ss_pred             CCccc------cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhccc
Confidence            99997      453  35678788888721 145678999999998  1122221           0   1211  1245


Q ss_pred             ecCCC--ce--eCCeec--cCCCCCCCCCCC--CCCCCCCCeEeeCCCCcccc
Q psy11059        114 VWMFD--VT--IQVYKG--RYCELPEIGDCS--SNPCLNDGVCVDVYKGRYCE  158 (429)
Q Consensus       114 ~~~~~--C~--~~g~~G--~~C~~~~i~~C~--~~~C~~~g~C~~~~~g~~C~  158 (429)
                      .....  |.  ..||.-  ..|.  |||||.  +.||.....|+|+.++|.|+
T Consensus       212 sg~~~k~C~kCkkGW~lde~gCv--DvnEC~~ep~~c~~~qfCvNteGSf~C~  262 (350)
T KOG4260|consen  212 SGESSKGCSKCKKGWKLDEEGCV--DVNECQNEPAPCKAHQFCVNTEGSFKCE  262 (350)
T ss_pred             CCCCCCChhhhcccceecccccc--cHHHHhcCCCCCChhheeecCCCceEec
Confidence            43332  77  788874  4576  899998  57799999999999999998

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.82  E-value=6.3e-06  Score=51.94  Aligned_cols=32  Identities=25%  Similarity=0.641  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCEeccCCCCceEEecCCCCccc
Q psy11059         12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVC   44 (429)
Q Consensus        12 C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   44 (429)
                      |+...+.|+.+++|+ ++.++|+|+|++||.|+
T Consensus         1 C~~~~~~C~~nA~C~-~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    1 CLENNGGCHPNATCT-NTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             TTTGGGGS-TTCEEE-E-TTSEEEEE-CEEECC
T ss_pred             CCCCCCCCCCCcEee-cCCCCEEeECCCCCccC
Confidence            344567899999999 99999999999999988

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.81  E-value=3.2e-05  Score=49.72  Aligned_cols=32  Identities=44%  Similarity=0.966  Sum_probs=29.0

Q ss_pred             CCCCCCCCC-CCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQR-NPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~-~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      ++|+|  .. ++|.++|+|+ +..++|+|.|++||.
T Consensus         1 d~~~C--~~~~~C~~~~~C~-~~~g~~~C~C~~g~~   33 (39)
T smart00179        1 DIDEC--ASGNPCQNGGTCV-NTVGSYRCECPPGYT   33 (39)
T ss_pred             CcccC--cCCCCcCCCCEeE-CCCCCeEeECCCCCc
Confidence            47899  45 7999999999 999999999999998

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.78  E-value=1.1e-05  Score=49.59  Aligned_cols=29  Identities=48%  Similarity=1.145  Sum_probs=19.1

Q ss_pred             CCCCCCCCCEEccCC-CCeeeeCCCCCCCC
Q psy11059        391 ESSPCLHGATCIDEV-ATFSCVCPKGLTGR  419 (429)
Q Consensus       391 ~~~~C~~~~~C~~~~-~~~~C~C~~g~~G~  419 (429)
                      .+++|.++|+|++.. ++|+|.|++||+|+
T Consensus         2 ~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    2 SSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            445666667776666 66777777777665

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.77  E-value=4e-05  Score=49.28  Aligned_cols=36  Identities=53%  Similarity=1.297  Sum_probs=24.0

Q ss_pred             CCCCCC-CCCCCCCEEccCCCCeeeeCCCCCC-CCCCC
Q psy11059        387 INECES-SPCLHGATCIDEVATFSCVCPKGLT-GRLCE  422 (429)
Q Consensus       387 ~~~C~~-~~C~~~~~C~~~~~~~~C~C~~g~~-G~~C~  422 (429)
                      +++|.. .+|.++++|+++.++|+|.|++||+ |.+|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence            455655 5676666777777777777777777 66653

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.70  E-value=1.8e-05  Score=52.03  Aligned_cols=33  Identities=42%  Similarity=0.951  Sum_probs=29.3

Q ss_pred             CCCCCCCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         61 PISNQICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        61 ~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      |||  ||+ ..+.|..+++|+  |+.|+|+|.|++||+
T Consensus         1 Did--EC~~~~~~C~~~~~C~--N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DID--ECAEGPHNCPENGTCV--NTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESS--TTTTTSSSSSTTSEEE--EETTEEEEEESTTEE
T ss_pred             Ccc--ccCCCCCcCCCCCEEE--cCCCCEEeeCCCCcE
Confidence            466  898 466899899999  999999999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.64  E-value=8.3e-05  Score=47.26  Aligned_cols=32  Identities=44%  Similarity=0.982  Sum_probs=28.7

Q ss_pred             CCCCCCCCC-CCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQR-NPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~-~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      ++|+|  .. .+|.++++|+ +..+.|+|.|++||.
T Consensus         1 ~~~~C--~~~~~C~~~~~C~-~~~~~~~C~C~~g~~   33 (38)
T cd00054           1 DIDEC--ASGNPCQNGGTCV-NTVGSYRCSCPPGYT   33 (38)
T ss_pred             CcccC--CCCCCcCCCCEeE-CCCCCeEeECCCCCc
Confidence            36889  45 7999999999 999999999999999

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1226|consensus

Probab=97.47  E-value=0.0011  Score=68.69  Aligned_cols=99  Identities=22%  Similarity=0.513  Sum_probs=64.1

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCC-------CCCC---CCCCCCCCCeEeeCCCC
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISN-------QICT---TAPPCLNGATCRPQLTE   85 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~-------~~C~---~~~~C~~~g~C~~~~~~   85 (429)
                      ...|+.+|+.+     =.+|.|.+||.            |..||-+.+.       +.|.   +..+|.++|.|+  =. 
T Consensus       466 s~~C~g~G~~~-----CG~C~C~~G~~------------G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~--CG-  525 (783)
T KOG1226|consen  466 SALCHGNGTFV-----CGQCRCDEGWL------------GKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCV--CG-  525 (783)
T ss_pred             ccccCCCCcEE-----ecceecCCCCC------------CCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEe--CC-
Confidence            44577777665     45799999999            7777754321       1343   133788999888  22 


Q ss_pred             CCeeeeCCCCCc----------ccCCCC---CCCCCCCCeEecCCCce-eCCeeccCCCCC-CCCCCC
Q psy11059         86 QLYECVCPPGYK----------EIRDCT---SNPCLNDGVCVWMFDVT-IQVYKGRYCELP-EIGDCS  138 (429)
Q Consensus        86 ~~~~C~C~~Gy~----------~~~~C~---~~~C~~~g~C~~~~~C~-~~g~~G~~C~~~-~i~~C~  138 (429)
                         .|+|.+...          +.-.|.   ...|..+|.|.-.. |. .+||+|..|+-+ +.+.|.
T Consensus       526 ---qC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG~-CvC~~GwtG~~C~C~~std~C~  589 (783)
T KOG1226|consen  526 ---QCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECGR-CVCNPGWTGSACNCPLSTDTCE  589 (783)
T ss_pred             ---ceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCCc-EEcCCCCccCCCCCCCCCcccc
Confidence               378876554          222333   24588888886444 99 999999998741 334444

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.41  E-value=0.00025  Score=44.98  Aligned_cols=36  Identities=53%  Similarity=1.305  Sum_probs=23.5

Q ss_pred             CCCCCC-CCCCCCCEEccCCCCeeeeCCCCCCCCCCC
Q psy11059        387 INECES-SPCLHGATCIDEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       387 ~~~C~~-~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~  422 (429)
                      +++|.. .+|.++++|++..++|+|.|++||+|.+|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence            345554 566666677777777777777777776653

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1836|consensus

Probab=97.39  E-value=0.00072  Score=77.31  Aligned_cols=112  Identities=29%  Similarity=0.669  Sum_probs=78.4

Q ss_pred             EeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCcc-CCCCCCCCCCCCC-CCeeCCccccCCCCCeeeeCCCCccC
Q psy11059        251 CTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV-ELTGCVGPDTCLN-GGTCKPYLVDETQHRFNCTCPSGYHG  328 (429)
Q Consensus       251 C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~-~~~~C~~~~~C~~-~~~C~~~~~~~~~~~~~C~C~~G~~G  328 (429)
                      |.|+.||+|..|+             .|.+||....-.. +...|.+ ..|.. ..+|       ...+..|.|.+...|
T Consensus       697 c~C~~g~tG~~Ce-------------~C~~gfrr~~~~~~~~~~c~~-C~cngh~~~C-------d~~tG~C~C~~~t~G  755 (1705)
T KOG1836|consen  697 CTCPVGYTGQFCE-------------SCAPGFRRLSPQLGPFCPCIP-CDCNGHSNIC-------DPRTGQCKCKHNTFG  755 (1705)
T ss_pred             ccCCCCcccchhh-------------hcchhhhcccccCCCCCcccc-cccCCccccc-------cCCCCceecccCCCC
Confidence            9999999999998             5888885432111 1122322 23322 2345       556788999999999


Q ss_pred             CCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCC--CceEEe-cCCCCCCCCccC
Q psy11059        329 KICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKI--NGYTCV-CAPGYSGKECSI  385 (429)
Q Consensus       329 ~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~--g~~~C~-C~~G~~G~~C~~  385 (429)
                      ..|+  +|..||+|..=.-....|.+-+|.+++.|....  ....|. |++||+|.+|+.
T Consensus       756 ~~C~--~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~  813 (1705)
T KOG1836|consen  756 GQCA--QCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEE  813 (1705)
T ss_pred             Cchh--hhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCccccccc
Confidence            9998  789999987533122237777888888887554  567898 999999999974

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.13  E-value=0.00074  Score=42.05  Aligned_cols=26  Identities=46%  Similarity=1.088  Sum_probs=24.6

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      ..+|.++++|+ +..+.|+|.|+.||.
T Consensus         5 ~~~C~~~~~C~-~~~~~~~C~C~~g~~   30 (36)
T cd00053           5 SNPCSNGGTCV-NTPGSYRCVCPPGYT   30 (36)
T ss_pred             CCCCCCCCEEe-cCCCCeEeECCCCCc
Confidence            67999999999 988999999999999

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.05  E-value=0.00094  Score=41.70  Aligned_cols=28  Identities=39%  Similarity=1.035  Sum_probs=24.8

Q ss_pred             CCCCCC-CCCCCCCEeccCCCCceEEecCCCCc
Q psy11059         11 PCDAQR-NPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus        11 ~C~~~~-~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      +|  .. ++|.++ +|+ +..++|+|.|++||.
T Consensus         1 ~C--~~~~~C~~~-~C~-~~~~~~~C~C~~g~~   29 (35)
T smart00181        1 EC--ASGGPCSNG-TCI-NTPGSYTCSCPPGYT   29 (35)
T ss_pred             CC--CCcCCCCCC-EEE-CCCCCeEeECCCCCc
Confidence            46  44 789998 999 999999999999999

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.82  E-value=0.0021  Score=39.91  Aligned_cols=30  Identities=47%  Similarity=1.230  Sum_probs=21.6

Q ss_pred             CCCCCCCCEEccCCCCeeeeCCCCCCCC-CC
Q psy11059        392 SSPCLHGATCIDEVATFSCVCPKGLTGR-LC  421 (429)
Q Consensus       392 ~~~C~~~~~C~~~~~~~~C~C~~g~~G~-~C  421 (429)
                      ..+|.++++|++..++|+|.|+.||.|. .|
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence            4567667777777777778888777777 54

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.81  E-value=0.0013  Score=37.14  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             ceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         32 NYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        32 ~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      +|+|+|++||+        ...+|..|+ |||
T Consensus         1 sy~C~C~~Gy~--------l~~d~~~C~-DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQ--------LSPDGRSCE-DID   23 (24)
T ss_pred             CEEeeCCCCCc--------CCCCCCccc-cCC
Confidence            69999999999        445689996 877

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.80  E-value=0.0021  Score=40.07  Aligned_cols=28  Identities=46%  Similarity=1.293  Sum_probs=20.4

Q ss_pred             CCCCCCCEEccCCCCeeeeCCCCCCC-CCC
Q psy11059        393 SPCLHGATCIDEVATFSCVCPKGLTG-RLC  421 (429)
Q Consensus       393 ~~C~~~~~C~~~~~~~~C~C~~g~~G-~~C  421 (429)
                      .+|.++ +|+++.++|+|.|++||+| ..|
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence            467666 7777777778888888877 555

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.47  E-value=0.0047  Score=37.71  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=20.0

Q ss_pred             CCCCCCCEeccCCCCceEEecCCCCc
Q psy11059         17 NPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus        17 ~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      ..|+++|+|+ ..  ..+|+|.+||+
T Consensus         6 ~~C~~~G~C~-~~--~g~C~C~~g~~   28 (32)
T PF07974_consen    6 NICSGHGTCV-SP--CGRCVCDSGYT   28 (32)
T ss_pred             CccCCCCEEe-CC--CCEEECCCCCc
Confidence            4699999999 54  57999999999

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.38  E-value=0.0018  Score=40.76  Aligned_cols=27  Identities=30%  Similarity=0.808  Sum_probs=18.2

Q ss_pred             CCCCCCCEEccCCCCeeeeCCCCCCCC
Q psy11059        393 SPCLHGATCIDEVATFSCVCPKGLTGR  419 (429)
Q Consensus       393 ~~C~~~~~C~~~~~~~~C~C~~g~~G~  419 (429)
                      ..|+.+|+|+++.++|+|+|++||+|+
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccC
Confidence            357777888888778888888888765

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.98  E-value=0.0066  Score=34.30  Aligned_cols=10  Identities=40%  Similarity=1.404  Sum_probs=4.8

Q ss_pred             eeeeCCCCCC
Q psy11059        408 FSCVCPKGLT  417 (429)
Q Consensus       408 ~~C~C~~g~~  417 (429)
                      |+|.|++||+
T Consensus         2 y~C~C~~Gy~   11 (24)
T PF12662_consen    2 YTCSCPPGYQ   11 (24)
T ss_pred             EEeeCCCCCc
Confidence            4445555543

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=95.64  E-value=0.0047  Score=29.51  Aligned_cols=13  Identities=54%  Similarity=1.347  Sum_probs=7.4

Q ss_pred             eeeCCCCCCCCCC
Q psy11059        409 SCVCPKGLTGRLC  421 (429)
Q Consensus       409 ~C~C~~g~~G~~C  421 (429)
                      +|+|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            3666666666655

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.56  E-value=0.017  Score=35.30  Aligned_cols=26  Identities=38%  Similarity=0.818  Sum_probs=18.6

Q ss_pred             CCCCCCEEccCCCCeeeeCCCCCCCCCC
Q psy11059        394 PCLHGATCIDEVATFSCVCPKGLTGRLC  421 (429)
Q Consensus       394 ~C~~~~~C~~~~~~~~C~C~~g~~G~~C  421 (429)
                      .|.++|+|+..  ..+|+|.+||+|+.|
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence            47777788654  347888888888765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG3512|consensus

Probab=95.36  E-value=0.15  Score=50.35  Aligned_cols=163  Identities=23%  Similarity=0.574  Sum_probs=91.1

Q ss_pred             cEeccCCCCCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCC----ccCCCCCCCCCCCCCCCe-eCC----c
Q psy11059        239 GKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNC----SVELTGCVGPDTCLNGGT-CKP----Y  309 (429)
Q Consensus       239 g~C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c----~~~~~~C~~~~~C~~~~~-C~~----~  309 (429)
                      ..|+.+..+..+|.|..+-+|..|+             .|.+-|.....    ..++.+|.. ..|..++. |.-    .
T Consensus       285 s~Cv~d~~~~ltCdC~HNTaGPdCg-------------rCKpfy~dRPW~raT~~~a~~c~a-c~Cn~harrcrfn~Ely  350 (592)
T KOG3512|consen  285 SRCVMDESSHLTCDCEHNTAGPDCG-------------RCKPFYYDRPWGRATALPANECVA-CNCNGHARRCRFNMELY  350 (592)
T ss_pred             ceeeeccCCceEEecccCCCCCCcc-------------cccccccCCCccccccCCCccccc-cccchhhhhcccchhhh
Confidence            4676777777999999999999997             35565533322    124455554 44433322 210    0


Q ss_pred             cccCCCCCeee-eCCCCccCCCCcccccCCCccCCCCc--cCCCcCCCCCcC----CCCccccCCCceEEecCCCCCCCC
Q psy11059        310 LVDETQHRFNC-TCPSGYHGKICEKCFCRPGFAGDHCD--VDFDECLSNPCF----NGATCQNKINGYTCVCAPGYSGKE  382 (429)
Q Consensus       310 ~~~~~~~~~~C-~C~~G~~G~~C~~C~C~~g~~g~~C~--~~i~~C~~~~C~----~~~~C~~~~g~~~C~C~~G~~G~~  382 (429)
                      .......+..| .|.....|..|.  -|..||+-+.-.  .+...|..-.|+    .+-+|....|  +|.|++|-+|.+
T Consensus       351 ~lSgr~SggvClnCrHnTaGrhCh--yCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tG--qCpCkeGvtG~t  426 (592)
T KOG3512|consen  351 RLSGRRSGGVCLNCRHNTAGRHCH--YCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTG--QCPCKEGVTGLT  426 (592)
T ss_pred             cccCccccceEeecccCCCCcccc--cccCccccCCCCCCchhhhhhhcCCcccccccccccccCC--cccCCCCCcccc
Confidence            00112233466 788888888887  678888743211  122233322232    3446765655  899999999988


Q ss_pred             ccC----------CCCCCCCC------CCCCCCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        383 CSI----------NINECESS------PCLHGATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       383 C~~----------~~~~C~~~------~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      |..          .+-+|.-.      .+.++.+    +..+.+.|+.++.|.+++.
T Consensus       427 CnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve----~qd~~s~Ck~~~~~~r~n~  479 (592)
T KOG3512|consen  427 CNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVE----PQDQCSKCKASPGGKRLNQ  479 (592)
T ss_pred             cccccchhhcccCCCcCceecCCCCccccCCCCc----chhccccCCCCCcceeccc
Confidence            741          11122111      1222222    3345678999998887764

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=95.06  E-value=0.0032  Score=54.42  Aligned_cols=136  Identities=22%  Similarity=0.536  Sum_probs=73.1

Q ss_pred             cccCCCCeeeeCCCCCCC---CCCccCCCCCCC----CCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCC
Q psy11059        267 CVDKRAGYFCDCPPTYGG---KNCSVELTGCVG----PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPG  339 (429)
Q Consensus       267 C~~~~~~~~C~C~~G~~g---~~c~~~~~~C~~----~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g  339 (429)
                      .+...+.|.|.|.+||..   ..|+.. ..|..    ..+|...+.|...........|.|.|.+||.-.          
T Consensus        13 LiQMSNHfEC~Cnegfvl~~EntCE~k-v~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~----------   81 (197)
T PF06247_consen   13 LIQMSNHFECKCNEGFVLKNENTCEEK-VECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILK----------   81 (197)
T ss_dssp             EEEESSEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEES----------
T ss_pred             EEEccCceEEEcCCCcEEccccccccc-eecCcccccCccccchhhhhcCCCcccceeEEEecccCceee----------
Confidence            444556677888888742   344422 23432    145777788843211124578999999999743          


Q ss_pred             ccCCCCccCCCcCCCCCcCCCCccccCC---CceEEecCCCCC---CCCccCCCC-CCCCCCCCCCCEEccCCCCeeeeC
Q psy11059        340 FAGDHCDVDFDECLSNPCFNGATCQNKI---NGYTCVCAPGYS---GKECSININ-ECESSPCLHGATCIDEVATFSCVC  412 (429)
Q Consensus       340 ~~g~~C~~~i~~C~~~~C~~~~~C~~~~---g~~~C~C~~G~~---G~~C~~~~~-~C~~~~C~~~~~C~~~~~~~~C~C  412 (429)
                        ...|.  ...|....|. .|.|+..+   ....|+|.-|+.   ...|..+-+ +|. --|..+.+|....+-|+|.+
T Consensus        82 --~~vCv--p~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~-LKCk~nE~CK~~~~~Y~C~~  155 (197)
T PF06247_consen   82 --QGVCV--PNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCS-LKCKENEECKLVDGYYKCVC  155 (197)
T ss_dssp             --SSSEE--EGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE---------TTTEEEEEETTEEEEEE
T ss_pred             --CCeEc--hhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCcccee-eecCCCcceeeeCcEEEeec
Confidence              11221  2445544565 56776433   345999999986   334432211 222 24777889999999999999


Q ss_pred             CCCCCCC
Q psy11059        413 PKGLTGR  419 (429)
Q Consensus       413 ~~g~~G~  419 (429)
                      .++|.+.
T Consensus       156 ~~~~~~~  162 (197)
T PF06247_consen  156 KEGFPGD  162 (197)
T ss_dssp             -TT-EEE
T ss_pred             CCCCCCC
Confidence            9998643

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=94.87  E-value=0.012  Score=37.01  Aligned_cols=18  Identities=28%  Similarity=0.778  Sum_probs=16.0

Q ss_pred             EeccCCCCceEEecCCCCc
Q psy11059         24 KCNEDETGNYDCTCDALHT   42 (429)
Q Consensus        24 ~C~~~~~~~~~C~C~~g~~   42 (429)
                      .|+ +.+++|+|.|++||.
T Consensus        11 ~C~-~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICV-NTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEE-EETTSEEEE-STTEE
T ss_pred             CCc-cCCCceEeECCCCCE
Confidence            788 889999999999999

...

>KOG1218|consensus

Probab=94.45  E-value=4.4  Score=38.88  Aligned_cols=65  Identities=25%  Similarity=0.553  Sum_probs=37.3

Q ss_pred             CCCcCCCCCCCccccC----CCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCcc
Q psy11059        255 ALHTGDPCKHGSCVDK----RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYH  327 (429)
Q Consensus       255 ~g~~G~~C~~~~C~~~----~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~  327 (429)
                      ++|.|..|.... ...    .....|.|.+||.|..+......|.....+.+++.|.       .....+.+.+.+.
T Consensus       140 ~~~~g~~C~~~c-~~~~~~~~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~-------~~~~~~~~~~~~~  208 (316)
T KOG1218|consen  140 ENLVGLKCQRDC-QCTGGCDCKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCN-------RSTGSCLCYPGPS  208 (316)
T ss_pred             cCCCCCCccCCC-CCccccCCCCCceeccCCcccccccccCCCcCCCcccCCCCeee-------ccccccccCCCCc
Confidence            356666665422 111    2234678899998888765544466556677777772       2334455555554

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=93.38  E-value=0.024  Score=49.13  Aligned_cols=121  Identities=24%  Similarity=0.494  Sum_probs=70.4

Q ss_pred             CEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC----CCCCCCCCCeEeeCC---CCCCeeeeCCCC
Q psy11059         23 GKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT----TAPPCLNGATCRPQL---TEQLYECVCPPG   95 (429)
Q Consensus        23 g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~----~~~~C~~~g~C~~~~---~~~~~~C~C~~G   95 (429)
                      |.-+ ...+.|.|.|.+||.-.         .-.+||.-+   +|.    ...+|.+-++|+...   ....|+|.|.+|
T Consensus        11 G~Li-QMSNHfEC~Cnegfvl~---------~EntCE~kv---~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~g   77 (197)
T PF06247_consen   11 GYLI-QMSNHFECKCNEGFVLK---------NENTCEEKV---ECDKLENVNKPCGDYAKCINQANKGEERAYKCDCING   77 (197)
T ss_dssp             EEEE-EESSEEEEEESTTEEEE---------ETTEEEE-------SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TT
T ss_pred             CEEE-EccCceEEEcCCCcEEc---------cccccccce---ecCcccccCccccchhhhhcCCCcccceeEEEecccC
Confidence            6666 66778999999999822         235676433   565    256799999999432   246799999999


Q ss_pred             Cc-c-----cCCCCCCCCCCCCeEecCCC------ce-eCCee---ccCCCCCCCCCCCCCCCCCCCeEeeCCCCcccc
Q psy11059         96 YK-E-----IRDCTSNPCLNDGVCVWMFD------VT-IQVYK---GRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCE  158 (429)
Q Consensus        96 y~-~-----~~~C~~~~C~~~g~C~~~~~------C~-~~g~~---G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C~  158 (429)
                      |. .     .+.|..-.|. .|.|+-.+.      |. .-|+.   ...|...--.+|. ..|..+..|....+-|.|.
T Consensus        78 Y~~~~~vCvp~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~-LKCk~nE~CK~~~~~Y~C~  154 (197)
T PF06247_consen   78 YILKQGVCVPNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCS-LKCKENEECKLVDGYYKCV  154 (197)
T ss_dssp             EEESSSSEEEGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE---------TTTEEEEEETTEEEEE
T ss_pred             ceeeCCeEchhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCcccee-eecCCCcceeeeCcEEEee
Confidence            99 2     3455555666 688876543      77 77776   1223210011222 2366777888887777887

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>smart00051 DSL delta serrate ligand

Probab=92.62  E-value=0.21  Score=35.80  Aligned_cols=45  Identities=29%  Similarity=0.625  Sum_probs=27.1

Q ss_pred             eeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCC
Q psy11059        276 CDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC  331 (429)
Q Consensus       276 C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C  331 (429)
                      -.|+++|.|..|+   ..|.+.+....+.+|       .. ...++|.+||+|..|
T Consensus        19 v~C~~~~yG~~C~---~~C~~~~d~~~~~~C-------d~-~G~~~C~~Gw~G~~C   63 (63)
T smart00051       19 VTCDENYYGEGCN---KFCRPRDDFFGHYTC-------DE-NGNKGCLEGWMGPYC   63 (63)
T ss_pred             eeCCCCCcCCccC---CEeCcCccccCCccC-------Cc-CCCEecCCCCcCCCC
Confidence            3677777777774   234433344556666       22 356788888887654

>KOG3512|consensus

Probab=92.38  E-value=0.37  Score=47.65  Aligned_cols=109  Identities=26%  Similarity=0.642  Sum_probs=61.1

Q ss_pred             ccCCCCCeeeeCCCCccCCCCcccccCCCccCC----CCccCCCcCCCCCcCCC-------------------Ccccc--
Q psy11059        311 VDETQHRFNCTCPSGYHGKICEKCFCRPGFAGD----HCDVDFDECLSNPCFNG-------------------ATCQN--  365 (429)
Q Consensus       311 ~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~----~C~~~i~~C~~~~C~~~-------------------~~C~~--  365 (429)
                      +.+..+..+|.|..+..|..|+  .|.+-|.+.    .-..++++|....|..+                   ++|++  
T Consensus       288 v~d~~~~ltCdC~HNTaGPdCg--rCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCr  365 (592)
T KOG3512|consen  288 VMDESSHLTCDCEHNTAGPDCG--RCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCR  365 (592)
T ss_pred             eeccCCceEEecccCCCCCCcc--cccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceEeecc
Confidence            3435566999999999999998  566666532    11124455554333222                   23332  


Q ss_pred             -CCCceEE-ecCCCCCCCCcc--CCCCCCCCCCCCC----CCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        366 -KINGYTC-VCAPGYSGKECS--ININECESSPCLH----GATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       366 -~~g~~~C-~C~~G~~G~~C~--~~~~~C~~~~C~~----~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                       ...+-+| .|++||.-+.=.  .+...|..-.|+.    +.+|..+.  .+|.|++|.+|..|+.
T Consensus       366 HnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~t--GqCpCkeGvtG~tCnr  429 (592)
T KOG3512|consen  366 HNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTT--GQCPCKEGVTGLTCNR  429 (592)
T ss_pred             cCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccC--CcccCCCCCccccccc
Confidence             1122234 477777522111  1223344444543    34675553  4899999999998874

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=92.35  E-value=0.059  Score=33.86  Aligned_cols=22  Identities=50%  Similarity=1.162  Sum_probs=18.1

Q ss_pred             CCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         72 PCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        72 ~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      .|.+  +|+  +++++|+|.|++||+
T Consensus         7 gC~h--~C~--~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen    7 GCSH--ICV--NTPGSYRCSCPPGYK   28 (36)
T ss_dssp             GSSS--EEE--EETTSEEEE-STTEE
T ss_pred             CcCC--CCc--cCCCceEeECCCCCE
Confidence            4555  899  889999999999998

...

>KOG1218|consensus

Probab=92.02  E-value=3.3  Score=39.69  Aligned_cols=42  Identities=31%  Similarity=0.600  Sum_probs=22.7

Q ss_pred             CCeeEeCCCCCcCC-CCCC--------CccccCCCCeeeeCCCCCCCCCCc
Q psy11059        247 GNYDCTCDALHTGD-PCKH--------GSCVDKRAGYFCDCPPTYGGKNCS  288 (429)
Q Consensus       247 ~~~~C~C~~g~~G~-~C~~--------~~C~~~~~~~~C~C~~G~~g~~c~  288 (429)
                      ....|.|.++|+|. .+..        ..+........|.+..+|.+..|.
T Consensus        13 ~~~~c~c~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~   63 (316)
T KOG1218|consen   13 GSGQCFCDPGYTGRLQCEHQAVTSACSGICPCEVNSGECGLGYGFVGSVCR   63 (316)
T ss_pred             CCCceecCCCccccccccCCCCCccccccCCccCCceeEecccccCCCccc
Confidence            45567788888773 2222        012222234456777777776654

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=90.86  E-value=0.14  Score=34.53  Aligned_cols=29  Identities=31%  Similarity=0.805  Sum_probs=22.5

Q ss_pred             CCCeeeeCCCCccCCCCcccccCCCccCCCC
Q psy11059        315 QHRFNCTCPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       315 ~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                      ...+.|.|+++|.|..|+  +|.++|++..-
T Consensus        15 ~~~G~C~C~~~~~G~~C~--~C~~g~~~~~~   43 (49)
T PF00053_consen   15 PSTGQCVCKPGTTGPRCD--QCKPGYFGLPS   43 (49)
T ss_dssp             ETCEEESBSTTEESTTS---EE-TTEECSTT
T ss_pred             CCCCEEeccccccCCcCc--CCCCccccccC
Confidence            356899999999999999  68899987643

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=90.56  E-value=0.39  Score=32.57  Aligned_cols=28  Identities=29%  Similarity=0.738  Sum_probs=22.9

Q ss_pred             CCCeeeeCCCCccCCCCcccccCCCccCCC
Q psy11059        315 QHRFNCTCPSGYHGKICEKCFCRPGFAGDH  344 (429)
Q Consensus       315 ~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~  344 (429)
                      ..+.+|.|+++|.|..|+  .|.++|++..
T Consensus        16 ~~~G~C~C~~~~~G~~C~--~C~~g~~~~~   43 (50)
T cd00055          16 PGTGQCECKPNTTGRRCD--RCAPGYYGLP   43 (50)
T ss_pred             CCCCEEeCCCcCCCCCCC--CCCCCCccCC
Confidence            345789999999999999  6788888753

>smart00051 DSL delta serrate ligand

Probab=90.09  E-value=0.44  Score=34.12  Aligned_cols=13  Identities=31%  Similarity=0.726  Sum_probs=6.5

Q ss_pred             EEecCCCCCCCCc
Q psy11059        371 TCVCAPGYSGKEC  383 (429)
Q Consensus       371 ~C~C~~G~~G~~C  383 (429)
                      .++|.+||+|..|
T Consensus        51 ~~~C~~Gw~G~~C   63 (63)
T smart00051       51 NKGCLEGWMGPYC   63 (63)
T ss_pred             CEecCCCCcCCCC
Confidence            3455555555443

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=89.19  E-value=0.47  Score=31.55  Aligned_cols=25  Identities=32%  Similarity=0.931  Sum_probs=21.9

Q ss_pred             CCeeeeCCCCccCCCCcccccCCCccC
Q psy11059        316 HRFNCTCPSGYHGKICEKCFCRPGFAG  342 (429)
Q Consensus       316 ~~~~C~C~~G~~G~~C~~C~C~~g~~g  342 (429)
                      .+.+|.|+++|+|..|+  .|++||+|
T Consensus        16 ~~G~C~C~~~~~G~~C~--~C~~g~~g   40 (46)
T smart00180       16 DTGQCECKPNVTGRRCD--RCAPGYYG   40 (46)
T ss_pred             CCCEEECCCCCCCCCCC--cCCCCcCC
Confidence            35689999999999999  78999998

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=89.13  E-value=0.22  Score=31.25  Aligned_cols=30  Identities=17%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCccc
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVC   44 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   44 (429)
                      ...+|..|+.|+....|++.|.|.+||..+
T Consensus         3 ~~~~cP~NA~C~~~~dG~eecrCllgyk~~   32 (37)
T PF12946_consen    3 IDTKCPANAGCFRYDDGSEECRCLLGYKKV   32 (37)
T ss_dssp             SSS---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred             cCccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence            456899999999555599999999999944

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=88.22  E-value=0.71  Score=31.27  Aligned_cols=27  Identities=37%  Similarity=0.860  Sum_probs=21.0

Q ss_pred             CCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCC
Q psy11059        247 GNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKN  286 (429)
Q Consensus       247 ~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~  286 (429)
                      .+.+|.|+++|+|..|+             .|.+||++..
T Consensus        17 ~~G~C~C~~~~~G~~C~-------------~C~~g~~~~~   43 (50)
T cd00055          17 GTGQCECKPNTTGRRCD-------------RCAPGYYGLP   43 (50)
T ss_pred             CCCEEeCCCcCCCCCCC-------------CCCCCCccCC
Confidence            45678999999999987             4778887653

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=85.70  E-value=0.34  Score=32.64  Aligned_cols=27  Identities=33%  Similarity=0.752  Sum_probs=20.2

Q ss_pred             CCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCC
Q psy11059        247 GNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKN  286 (429)
Q Consensus       247 ~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~  286 (429)
                      .+.+|.|.++|+|..|+             .|.++|++..
T Consensus        16 ~~G~C~C~~~~~G~~C~-------------~C~~g~~~~~   42 (49)
T PF00053_consen   16 STGQCVCKPGTTGPRCD-------------QCKPGYFGLP   42 (49)
T ss_dssp             TCEEESBSTTEESTTS--------------EE-TTEECST
T ss_pred             CCCEEeccccccCCcCc-------------CCCCcccccc
Confidence            56789999999999998             4777877653

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PHA02887 EGF-like protein; Provisional

Probab=84.72  E-value=0.85  Score=36.39  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=21.5

Q ss_pred             CCCCCCcEec-cCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCN-EDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~-~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|. +|+|. ........|.|+.||+|..|++
T Consensus        92 ~YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         92 DFCI-NGECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             CEee-CCEEEccccCCCceeECCCCcccCCCCc
Confidence            4566 46783 2344567888888888888875

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=84.05  E-value=1.1  Score=40.90  Aligned_cols=39  Identities=26%  Similarity=0.623  Sum_probs=31.6

Q ss_pred             cCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         52 TLGSIHCETPISNQICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        52 ~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      .+.+..|+ +++  +|. ..++|.+  .|.  ++.++|.|.|.+||+
T Consensus       178 ~l~~~~C~-~~~--~C~~~~~~c~~--~C~--~~~g~~~c~c~~g~~  217 (224)
T cd01475         178 KFQGKICV-VPD--LCATLSHVCQQ--VCI--STPGSYLCACTEGYA  217 (224)
T ss_pred             hcccccCc-Cch--hhcCCCCCccc--eEE--cCCCCEEeECCCCcc
Confidence            34578897 677  897 4566765  799  999999999999997

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=83.84  E-value=0.47  Score=29.78  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=18.8

Q ss_pred             CCCCCCCCeEeeCCCC-CCeeeeCCCCCc
Q psy11059         70 APPCLNGATCRPQLTE-QLYECVCPPGYK   97 (429)
Q Consensus        70 ~~~C~~~g~C~~~~~~-~~~~C~C~~Gy~   97 (429)
                      ...|..++.|+  +.. |+++|.|..||.
T Consensus         4 ~~~cP~NA~C~--~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    4 DTKCPANAGCF--RYDDGSEECRCLLGYK   30 (37)
T ss_dssp             SS---TTEEEE--EETTSEEEEEE-TTEE
T ss_pred             CccCCCCcccE--EcCCCCEEEEeeCCcc
Confidence            46778889999  655 899999999998

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PHA02887 EGF-like protein; Provisional

Probab=82.83  E-value=1.2  Score=35.47  Aligned_cols=29  Identities=31%  Similarity=0.918  Sum_probs=21.4

Q ss_pred             CCCCCCEEcc--CCCCeeeeCCCCCCCCCCCC
Q psy11059        394 PCLHGATCID--EVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       394 ~C~~~~~C~~--~~~~~~C~C~~g~~G~~C~~  423 (429)
                      -|.+ |+|.-  ......|+|.+||+|.+|+.
T Consensus        93 YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         93 FCIN-GECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             EeeC-CEEEccccCCCceeECCCCcccCCCCc
Confidence            4654 58854  34567899999999999984

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=82.25  E-value=1.1  Score=36.32  Aligned_cols=29  Identities=41%  Similarity=1.045  Sum_probs=21.6

Q ss_pred             CCCCCCEEcc--CCCCeeeeCCCCCCCCCCCC
Q psy11059        394 PCLHGATCID--EVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       394 ~C~~~~~C~~--~~~~~~C~C~~g~~G~~C~~  423 (429)
                      -|.++ +|.-  ....+.|+|..||+|.+||.
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh   82 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQH   82 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCcccccccc
Confidence            46664 7854  34678899999999999985

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=82.23  E-value=1.7  Score=28.81  Aligned_cols=24  Identities=38%  Similarity=0.894  Sum_probs=20.0

Q ss_pred             CeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCC
Q psy11059        248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGG  284 (429)
Q Consensus       248 ~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g  284 (429)
                      +.+|.|+++|+|..|+             .|.+||+|
T Consensus        17 ~G~C~C~~~~~G~~C~-------------~C~~g~~g   40 (46)
T smart00180       17 TGQCECKPNVTGRRCD-------------RCAPGYYG   40 (46)
T ss_pred             CCEEECCCCCCCCCCC-------------cCCCCcCC
Confidence            5688999999999987             47888877

>KOG3516|consensus

Probab=80.46  E-value=1.5  Score=48.37  Aligned_cols=42  Identities=33%  Similarity=0.822  Sum_probs=35.4

Q ss_pred             CCCCCCCCCCCCCCEEccCCCCeeeeCC-CCCCCCCCCCCCCC
Q psy11059        386 NINECESSPCLHGATCIDEVATFSCVCP-KGLTGRLCETNIDD  427 (429)
Q Consensus       386 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~-~g~~G~~C~~~i~~  427 (429)
                      .++.|.+++|.+++.|......|.|.|. .||.|..|...|.|
T Consensus       544 i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e  586 (1306)
T KOG3516|consen  544 ISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYE  586 (1306)
T ss_pred             cccccCCccccCCCcccccccceeEeccccccccccccCCCcc
Confidence            4677888999999999888888999998 89999999877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		4e-22
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		2e-21
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		2e-14
2ygq_A	324	Wif Domain-Epidermal Growth Factor (Egf)-Like Domai		6e-08
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		1e-06
2rqz_A	38	Structure Of Sugar Modified Epidermal Growth Factor		4e-05
1edm_B	39	Epidermal Growth Factor-Like Domain From Human Fact		6e-05
1edm_B	39	Epidermal Growth Factor-Like Domain From Human Fact		7e-04
1x7a_L	146	Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)		2e-04
1pfx_L	146	Porcine Factor Ixa Length = 146		4e-04
2vj2_A	169	Human Jagged-1, Domains Dsl And Egfs1-3 Length = 16		8e-04

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
           +C C  G+ G  C++D +EC+SNPC N ATC ++I  + C+C PGY G  C +N +EC S
Sbjct: 29  ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 88
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNI 425
           SPCLH   C+D++  F C CP G TG LC+ ++
Sbjct: 89  SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
           +C C  G+ G  C++D +EC+SNPC N ATC ++I  + C+C PGY G  C +N +EC S
Sbjct: 27  ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 86
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           SPCLH   C+D++  F C CP G TG LC+
Sbjct: 87  SPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD-VDFDECLSN 355
           P+ C NGG C P L D +   F+C CP G+    C         A D  +      C  N
Sbjct: 5   PNPCENGGICLPGLADGS---FSCECPDGFTDPNCSSVV---EVASDEEEPTSAGPCTPN 58
Query: 356 PCFNGATCQ-------NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATF 408
           PC NG TC+       +   GY C C  G++G  C  NINECE  PC +G  C D VA +
Sbjct: 59  PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANY 118
Query: 409 SCVCPKGLTGRLCE 422
           SC CP    GR C+
Sbjct: 119 SCECPGEFMGRNCQ 132

>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 61/147 (41%), Gaps = 38/147 (25%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK------------------CFCRP 338
           P  C NGG C          R  C CP G+HG  CEK                  C C P
Sbjct: 152 PGGCRNGGFC--------NERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPP 203
Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHG 398
           GF G +CD       S  CFNG TC        C+C PG  G++C   I++C   PC +G
Sbjct: 204 GFYGVNCD---KANCSTTCFNGGTC---FYPGKCICPPGLEGEQCE--ISKC-PQPCRNG 254
Query: 399 ATCIDEVATFSCVCPKGLTGRLCETNI 425
             CI +     C C KG  G LC   +
Sbjct: 255 GKCIGKS---KCKCSKGYQGDLCSKPV 278

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININEC---ESSPCLHGATCIDEVATF 408
           C+S PC +  +CQ+ I GYTC C+PGY G  C +  NEC    +  C H   C+    ++
Sbjct: 8   CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESY 65
Query: 409 SCVCPKG 415
           +C C +G
Sbjct: 66  TCSCAQG 72

>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like Repeat 12 Of Mouse Notch-1 Receptor Length = 38

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
           D +EC+SNPC N ATC ++I  + C+C PGY G  C I
Sbjct: 1   DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38

>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix Length = 39

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
           VD D+C SNPC NG +C++ IN Y C C  G+ GK C +
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix Length = 39

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           ++ ++CES+PCL+G +C D++ ++ C CP G  G+ CE
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino) Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2- Fluorophenyl]- 3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide Length = 146

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
           VD D+C  NPC NG  C++ IN Y C C  G+ GK C ++
Sbjct: 46  VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85

>pdb|1PFX|L Chain L, Porcine Factor Ixa Length = 146

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
           VD D+C  NPC NG  C+  IN Y C C  G+ GK C ++
Sbjct: 46  VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85

>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 319 NCTCPSGYHGKICEKCFCRPG-----------------FAGDHCDVDFDECLSN-PCFNG 360
           +C C  G+ G  C+KC   PG                 + G  CD D + C ++ PC NG
Sbjct: 84  DCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143
Query: 361 ATCQNK-INGYTCVCAPGYSGKECSI 385
            TC N   + Y C C  GYSG  C I
Sbjct: 144 GTCSNTGPDKYQCSCPEGYSGPNCEI 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-36
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	9e-31
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-28
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-12
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-10
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-09
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-09
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	1e-33
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	6e-20
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	1e-11
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	9e-11
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-08
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-26
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-23
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-18
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-15
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	1e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-25
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-23
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-05
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-25
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-24
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	5e-14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	8e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-06
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-24
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-20
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	7e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	4e-07
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-23
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-19
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-10
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	9e-04
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-21
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-15
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-10
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	7e-08
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	8e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-16
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-16
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-06
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	8e-07
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-05
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	1e-11
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-10
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-11
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	1e-10
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-11
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-08
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	4e-08
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	7e-07
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-06
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	6e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-11
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	7e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-06
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	7e-11
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	9e-10
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-07
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	1e-10
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	2e-09
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	4e-08
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	5e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-09
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	1e-08
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	2e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	8e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	9e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	7e-04
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-07
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	5e-05
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-06
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-05
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	9e-06
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-05
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	7e-05
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	8e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	6e-04

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  127 bits (322), Expect = 7e-36
 Identities = 44/97 (45%), Positives = 62/97 (63%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
           +C C  G+ G  C++D +EC+SNPC N ATC ++I  + C+C PGY G  C +N +EC S
Sbjct: 29  ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 88

Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
           SPCLH   C+D++  F C CP G TG LC+ ++    
Sbjct: 89  SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHIL 125

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  114 bits (287), Expect = 9e-31
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 260 DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
           +PC+H G C++    + C C   Y G  C +++  CV  + C N  TC      +    F
Sbjct: 13  NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV-SNPCQNDATCL-----DQIGEF 66

Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
            C C               PG+ G HC+V+ DEC S+PC +   C +KIN + C C  G+
Sbjct: 67  QCICM--------------PGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF 112

Query: 379 SGKECSININECESSPCLHG 398
           +G  C ++++    +  +  
Sbjct: 113 TGHLCQVDLHHILDAQKMVW 132

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  106 bits (266), Expect = 7e-28
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
           DVD     +NPC +   C N +  + C C  GY+G  C I++NEC S+PC + ATC+D++
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63

Query: 406 ATFSCVCPKGLTGRLCETNIDDCE 429
             F C+C  G  G  CE N D+C 
Sbjct: 64  GEFQCICMPGYEGVHCEVNTDECA 87

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)

Query: 72  PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTI 121
           PC +   C   L    +EC C  GY       ++ +C SNPC ND  C+        + +
Sbjct: 14  PCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 71

Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPC 170
             Y+G +CE+    +C+S+PCL++G C+D            + G  C++ ++        
Sbjct: 72  PGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV-DLHHILDAQK 129

Query: 171 LNDG 174
           +   
Sbjct: 130 MVWN 133

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 29/145 (20%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
           C    NPC++ GKC  +  G+++C C   +T               CE  ++   C +  
Sbjct: 8   CSLGANPCEHAGKC-INTLGSFECQCLQGYT------------GPRCEIDVNE--CVSN- 51

Query: 72  PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTI 121
           PC N ATC  Q+ E  ++C+C PGY+         +C S+PCL++G C+   +       
Sbjct: 52  PCQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP 109

Query: 122 QVYKGRYCELPEIGDCSSNPCLNDG 146
             + G  C++ ++        +   
Sbjct: 110 TGFTGHLCQV-DLHHILDAQKMVWN 133

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 58/162 (35%)

Query: 164 DCSSNPCLNDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVDEV---- 208
              +NPC + G C++            Y G   E+ ++ +C SNPC ND  C+D++    
Sbjct: 9   SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI-DVNECVSNPCQNDATCLDQIGEFQ 67

Query: 209 ------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPC 262
                 Y+G + E+    +C S+PCL+                                 
Sbjct: 68  CICMPGYEGVHCEV-NTDECASSPCLH--------------------------------- 93

Query: 263 KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNG 303
            +G C+DK   + C+CP  + G  C V+L   +       N 
Sbjct: 94  -NGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 384 SININECE--SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
           + +++EC   ++PC H   CI+ + +F C C +G TG  CE ++++C 
Sbjct: 2   AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV 49

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score =  122 bits (307), Expect = 1e-33
 Identities = 49/137 (35%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
           C NGG C P L D +   F+C CP G+    C         + +        C  NPC N
Sbjct: 8   CENGGICLPGLADGS---FSCECPDGFTDPNCSSVVEVA--SDEEEPTSAGPCTPNPCHN 62

Query: 360 GATCQ-------NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVC 412
           G TC+       +   GY C C  G++G  C  NINECE  PC +G  C D VA +SC C
Sbjct: 63  GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122

Query: 413 PKGLTGRLCETNIDDCE 429
           P    GR C+       
Sbjct: 123 PGEFMGRNCQYKGGGHH 139

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 84.8 bits (210), Expect = 6e-20
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 21/101 (20%)

Query: 350 DECLSNPCFNGATCQNKI--NGYTCVCAPGYSGKECSINI------------NECESSPC 395
           D C  NPC NG  C   +    ++C C  G++   CS  +              C  +PC
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60

Query: 396 LHGATCI-------DEVATFSCVCPKGLTGRLCETNIDDCE 429
            +G TC        D    + C CP+G  G  C+ NI++CE
Sbjct: 61  HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE 101

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 39/179 (21%), Positives = 52/179 (29%), Gaps = 54/179 (30%)

Query: 192 DCTSNPCLNDGVCVDEVYKGRY--------------WELPEIRDCTSNPCLNDCV-NPCQ 236
            C  NPC N G+C+  +  G +                +    D         C  NPC 
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61

Query: 237 NGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVG 296
           NGG C   E                       D   GY C CP  + G +C   +  C  
Sbjct: 62  NGGTCEISE-------------------AYRGDTFIGYVCKCPRGFNGIHCQHNINECE- 101

Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSN 355
            + C NGG C     D     ++C CP                F G +C         +
Sbjct: 102 VEPCKNGGIC----TDLV-ANYSCECP--------------GEFMGRNCQYKGGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 33/137 (24%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 72  PCLNGATCRPQLTEQLYECVCPPGYK------------------EIRDCTSNPCLNDGVC 113
           PC NG  C P L +  + C CP G+                       CT NPC N G C
Sbjct: 7   PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66

Query: 114 VWMFDVTIQV-----------YKGRYCELPEIGDCSSNPCLNDGVCVDV----------- 151
                                + G +C+   I +C   PC N G+C D+           
Sbjct: 67  EISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVANYSCECPGE 125

Query: 152 YKGRYCELPEIGDCSSN 168
           + GR C+  + G    +
Sbjct: 126 FMGRNCQY-KGGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 37/187 (19%), Positives = 47/187 (25%), Gaps = 74/187 (39%)

Query: 136 DCSSNPCLNDGVCVDV-------------YKGRYCELPEIGDCSSNPCLNDGVCVDVYKG 182
            C  NPC N G+C+               +    C    +   S                
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS-VVEVASDEEEPTS--------- 51

Query: 183 RYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCN 242
                     CT NPC N G C                                      
Sbjct: 52  -------AGPCTPNPCHNGGTCEIS-------------------------------EAYR 73

Query: 243 EDETGNYDCTCDALHTG------------DPCKHG-SCVDKRAGYFCDCPPTYGGKNCSV 289
            D    Y C C     G            +PCK+G  C D  A Y C+CP  + G+NC  
Sbjct: 74  GDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133

Query: 290 ELTGCVG 296
           +  G   
Sbjct: 134 KGGGHHH 140

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 30/119 (25%), Positives = 39/119 (32%), Gaps = 33/119 (27%)

Query: 17  NPCQNGGKCNEDETGN-YDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP---- 71
           NPC+NGG C        + C C    T              +C + +        P    
Sbjct: 6   NPCENGGICLPGLADGSFSCECPDGFT------------DPNCSSVVEVASDEEEPTSAG 53

Query: 72  -----PCLNGATCRPQLTEQL-----YECVCPPGY------KEIRDCTSNPCLNDGVCV 114
                PC NG TC      +      Y C CP G+        I +C   PC N G+C 
Sbjct: 54  PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICT 112

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score =  102 bits (256), Expect = 2e-26
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CES 392
                     +   D D+C ++PC N   C++ +  YTC C  G+ GK C +   + C  
Sbjct: 27  EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86

Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
                   C +E  +  C C +G T            
Sbjct: 87  DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 93.5 bits (233), Expect = 3e-23
 Identities = 30/143 (20%), Positives = 41/143 (28%), Gaps = 20/143 (13%)

Query: 260 DPCKHGSC-VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
             C   +C  ++    F D   T    N   +   C     C N G CK     +    +
Sbjct: 10  RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGLGEY 63

Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
            CTC  G+ GK CE                   C  +       C  + N   C CA GY
Sbjct: 64  TCTCLEGFEGKNCEL-------------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110

Query: 379 SGKECSININECESSPCLHGATC 401
           +  +           PC      
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 15/77 (19%), Positives = 26/77 (33%)

Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
            L   C        +                   + ++CE+SPC +   C D +  ++C 
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66

Query: 412 CPKGLTGRLCETNIDDC 428
           C +G  G+ CE      
Sbjct: 67  CLEGFEGKNCELFTRKL 83

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 70.0 bits (172), Expect = 7e-15
 Identities = 21/145 (14%), Positives = 29/145 (20%), Gaps = 33/145 (22%)

Query: 233 NPCQNGGKCNEDETGNYDCTCDALHTGDPC-------------KHGSCVDKRAGYFCDCP 279
             C     C+ +E        D  +                    G C D    Y C C 
Sbjct: 10  RECMEET-CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68

Query: 280 PTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPG 339
             + GKNC +        D       C                 +         C C  G
Sbjct: 69  EGFEGKNCELFTRKLCSLDNGDCDQFCHEE-------------QNSVV------CSCARG 109

Query: 340 FAGDHCDVDFDECLSNPCFNGATCQ 364
           +               PC      +
Sbjct: 110 YTLADNGKACIPTGPYPCGKQTLER 134

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 24/126 (19%)

Query: 72  PCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFDVTI---- 121
            C+       +  E                 K+   C ++PC N G C            
Sbjct: 11  ECMEETCSYEEARE--VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68

Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPC 170
           + ++G+ CEL     CS +    D  C +            Y                PC
Sbjct: 69  EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPYPC 127

Query: 171 LNDGVC 176
               + 
Sbjct: 128 GKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 23/126 (18%)

Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
           R+C    C  +     +F+ + +  +       +   C ++PC N G C D         
Sbjct: 10  RECMEETCSYEEAR-EVFEDSDKTNEFWNKYK-DGDQCETSPCQNQGKCKDGLGEYTCTC 67

Query: 152 ---YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRY------WELP----EIRDCTSNPC 198
              ++G+ CEL     CS +    D  C +            + L             PC
Sbjct: 68  LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 127

Query: 199 LNDGVC 204
               + 
Sbjct: 128 GKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 23/103 (22%), Positives = 29/103 (28%), Gaps = 23/103 (22%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
           +PCQN GKC +D  G Y CTC                   +CE         +       
Sbjct: 48  SPCQNQGKC-KDGLGEYTCTCLEGFE------------GKNCELFTRK--LCSLDNGDCD 92

Query: 77  ATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVC 113
             C  +       C C  GY      K        PC    + 
Sbjct: 93  QFCHEEQNS--VVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score =  100 bits (251), Expect = 1e-25
 Identities = 22/96 (22%), Positives = 32/96 (33%)

Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
                        VD D+C  NPC NG  C++ IN Y C C  G+ GK C ++      +
Sbjct: 33  ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92

Query: 394 PCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
                       +   C C  G      + +     
Sbjct: 93  GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAV 128

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 274 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 333
            F +   T       V+   C  P+ CLNGG CK  +             + Y      +
Sbjct: 31  VFENTEKTNEFWKQYVDGDQCE-PNPCLNGGLCKDDI-------------NSY------E 70

Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
           C+C+ GF G +C++D    + N            +   C C  GY       +       
Sbjct: 71  CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130

Query: 394 PCLHGATCID 403
           PC   +    
Sbjct: 131 PCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 26/129 (20%)

Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
           R+C    C  +     +F+ T +  +     + +   C  NPCLN G+C D         
Sbjct: 16  RECIEEKCSFEEAR-EVFENTEKTNEFWKQYV-DGDQCEPNPCLNGGLCKDDINSYECWC 73

Query: 152 ---YKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYWELPEIRDCTSNP 197
              ++G+ CEL +      N                      Y+    +    +     P
Sbjct: 74  QVGFEGKNCEL-DATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-SCKPAVPFP 131

Query: 198 CLNDGVCVD 206
           C    V   
Sbjct: 132 CGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 24/103 (23%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
           NPC NGG C +D+  +Y+C C                   +CE   +   C         
Sbjct: 54  NPCLNGGLC-KDDINSYECWCQVGFE------------GKNCELDAT---CNIKNGRCKQ 97

Query: 77  ATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVC 113
                  ++    C C  GY      K  +     PC    V 
Sbjct: 98  FCKTGADSK--VLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVS 138

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 17/98 (17%)

Query: 96  YKEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDCSSNPCLNDGVCVDV 151
           Y +   C  NPCLN G+C    +         ++G+ CEL +      N           
Sbjct: 45  YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL-DATCNIKNGRCKQFCKTGA 103

Query: 152 -----------YKGRYCELPEIGDCSSNPCLNDGVCVD 178
                      Y+    +          PC    V   
Sbjct: 104 DSKVLCSCTTGYRLAPDQK-SCKPAVPFPCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 23/178 (12%), Positives = 37/178 (20%), Gaps = 83/178 (46%)

Query: 189 EIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGN 248
           +   C  NPCLN G+C D++                                       +
Sbjct: 47  DGDQCEPNPCLNGGLCKDDI--------------------------------------NS 68

Query: 249 YDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKP 308
           Y+C C                            + GKNC ++ T  +             
Sbjct: 69  YECWC-------------------------QVGFEGKNCELDATCNIKNG-RCKQFCKTG 102

Query: 309 YLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK 366
                          S         C C  G+            +  PC   +   + 
Sbjct: 103 A-------------DSKVL------CSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 18/133 (13%), Positives = 31/133 (23%), Gaps = 22/133 (16%)

Query: 28  DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQL 87
           +E  +++   +            +T                   PCLNG  C+  +    
Sbjct: 20  EEKCSFEEAREVFENTE------KTNEFWKQYVDGDQ---CEPNPCLNGGLCKDDINS-- 68

Query: 88  YECVCPPGY------KEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDC 137
           YEC C  G+       +      N               +      Y+    +       
Sbjct: 69  YECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-SCKPA 127

Query: 138 SSNPCLNDGVCVD 150
              PC    V   
Sbjct: 128 VPFPCGRVSVSHS 140

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  102 bits (255), Expect = 1e-25
 Identities = 31/171 (18%), Positives = 46/171 (26%), Gaps = 24/171 (14%)

Query: 260 DPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 319
           + C +    +     F D   T    N   +   C     C N G CK     +    + 
Sbjct: 15  ETCSYEEARE----VFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGLGEYT 64

Query: 320 CTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS 379
           CTC  G+ GK CE                   C  +       C  + N   C CA GY+
Sbjct: 65  CTCLEGFEGKNCEL-------------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111

Query: 380 GKECSININECESSPCLHGATCIDEVATFSCVCPKGLT-GRLCETNIDDCE 429
             +           PC        + +        G     +     D  +
Sbjct: 112 LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAAD 162

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 29/200 (14%), Positives = 48/200 (24%), Gaps = 23/200 (11%)

Query: 220 RDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKH-GSCVDKRAGYFCDC 278
           R+C    C  +     +     ++                 PC++ G C D    Y C C
Sbjct: 10  RECMEETCSYEEA--REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67

Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
              + GKNC +        D       C                 +         C C  
Sbjct: 68  LEGFEGKNCELFTRKLCSLDNGDCDQFCHEE-------------QNSVV------CSCAR 108

Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS-GKECSININECESSPCLH 397
           G+               PC      + K +      + G +         +  +  P  +
Sbjct: 109 GYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTEN 168

Query: 398 GATCIDEVATFSCVCPKGLT 417
               +D   T        LT
Sbjct: 169 PFDLLDFNQTQPERGDNNLT 188

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 15/77 (19%), Positives = 26/77 (33%)

Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
            L   C        +                   + ++CE+SPC +   C D +  ++C 
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66

Query: 412 CPKGLTGRLCETNIDDC 428
           C +G  G+ CE      
Sbjct: 67  CLEGFEGKNCELFTRKL 83

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 23/166 (13%), Positives = 38/166 (22%), Gaps = 33/166 (19%)

Query: 72  PCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFD----VTI 121
            C+       +  E                 K+   C ++PC N G C           +
Sbjct: 11  ECMEETCSYEEARE--VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68

Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----------EIGDCSSNPCL 171
           + ++G+ CEL     CS +    D  C +      C                     PC 
Sbjct: 69  EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCG 128

Query: 172 NDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVD 206
              +                               +P  N    +D
Sbjct: 129 KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLD 174

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 20/130 (15%), Positives = 30/130 (23%), Gaps = 25/130 (19%)

Query: 72  PCLNGATCRPQLTEQLYECVCPPGY------KEIRD-CTSNPCLNDGVCVWMFDVTI--- 121
           PC N   C+  L E  Y C C  G+         R  C+ +    D  C    +  +   
Sbjct: 49  PCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106

Query: 122 -QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP-----------EIGDCSSNP 169
            + Y                PC    +                               +P
Sbjct: 107 ARGYTLADNGK-ACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDP 165

Query: 170 CLNDGVCVDV 179
             N    +D 
Sbjct: 166 TENPFDLLDF 175

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score =  101 bits (253), Expect = 3e-24
 Identities = 55/264 (20%), Positives = 77/264 (29%), Gaps = 52/264 (19%)

Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQ--NGGKCNEDETGNYD 250
            + +  +     V+    G       +      PCL                  E     
Sbjct: 76  RSLDKGIMADPTVNVPLLGTVPHKASV-VQVGFPCLGKQDGVAAFEVDVIVMNSEGNTIL 134

Query: 251 CTCDALHTGDPCKHGSCVDK-------RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNG 303
            T         C+   C               C+CP  + G +C       +    C+NG
Sbjct: 135 KTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEK----ALCTPRCMNG 190

Query: 304 GTCKPYLVDETQHRFNCTCPSGYHGKICE------------------KCFCRPGFAGDHC 345
           G C             C CP G++G  C+                  KC C PG  G+ C
Sbjct: 191 GLC--------VTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQC 242

Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
           ++        PC NG  C   I    C C+ GY G  CS  + E     C    TC +  
Sbjct: 243 EIS---KCPQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTCHE-- 291

Query: 406 ATFSCVCPKGLTGRLCETNIDDCE 429
               C C +G  GR C    +   
Sbjct: 292 -PNKCQCQEGWHGRHCNKRYEASL 314

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 89.9 bits (223), Expect = 3e-20
 Identities = 54/198 (27%), Positives = 64/198 (32%), Gaps = 53/198 (26%)

Query: 229 NDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCK----------HGSCVDKRAGYFCDC 278
            +C   C+NGG CNE       C C     G  C+           G CV      FC C
Sbjct: 149 AECPGGCRNGGFCNE----RRICECPDGFHGPHCEKALCTPRCMNGGLCVT---PGFCIC 201

Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------ 332
           PP + G NC           TC NGGTC         +   C CP G  G+ CE      
Sbjct: 202 PPGFYGVNCDK----ANCSTTCFNGGTC--------FYPGKCICPPGLEGEQCEISKCPQ 249

Query: 333 ------------KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
                       KC C  G+ GD C     E     C    TC        C C  G+ G
Sbjct: 250 PCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTC---HEPNKCQCQEGWHG 303

Query: 381 KECSININECESSPCLHG 398
           + C+            H 
Sbjct: 304 RHCNKRYEASLIGTKHHH 321

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 48/286 (16%), Positives = 75/286 (26%), Gaps = 74/286 (25%)

Query: 42  TVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIR- 100
            V  +G        +    P   +    A   ++      +                   
Sbjct: 89  NVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSE--GNTILKTPQNAIFFKTC 146

Query: 101 --DCTSNPCLNDGVCVWMFDVTIQV-YKGRYCELPEIGDCSSNPCLNDGVCVDV------ 151
                   C N G C           + G +CE        +  C+N G+CV        
Sbjct: 147 QQAECPGGCRNGGFCNERRICECPDGFHGPHCEK----ALCTPRCMNGGLCVTPGFCICP 202

Query: 152 --YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCV-DEV 208
             + G  C+        S  C N G C                         G C+    
Sbjct: 203 PGFYGVNCD----KANCSTTCFNGGTCF----------------------YPGKCICPPG 236

Query: 209 YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPC------ 262
            +G   E+ +            C  PC+NGGKC     G   C C   + GD C      
Sbjct: 237 LEGEQCEISK------------CPQPCRNGGKC----IGKSKCKCSKGYQGDLCSKPVCE 280

Query: 263 ----KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 304
                HG+C +      C C   + G++C+      +      +  
Sbjct: 281 PGCGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 44/245 (17%), Positives = 62/245 (25%), Gaps = 40/245 (16%)

Query: 12  CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
                 PC            +        +T+              C+            
Sbjct: 102 VVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIF--FKTCQQAECP------G 153

Query: 72  PCLNGATCRPQLTEQLYECVCPPGYKEIR---DCTSNPCLNDGVCVWMFDVTIQV-YKGR 127
            C NG  C  +       C CP G+          +  C+N G+CV          + G 
Sbjct: 154 GCRNGGFCNER-----RICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGV 208

Query: 128 YCELPEIGDCSSNPCLNDGVCVDVYK--------GRYCELPEIGDCSSNPCLNDGVCVDV 179
            C+        S  C N G C    K        G  CE+         PC N G C+  
Sbjct: 209 NCD----KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEI----SKCPQPCRNGGKCIGK 260

Query: 180 YK-----GRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNP 234
            K     G   +L     C    C   G C +   K +  E    R C      +     
Sbjct: 261 SKCKCSKGYQGDLCSKPVC-EPGCGAHGTCHEP-NKCQCQEGWHGRHCNKRYEASLIGTK 318

Query: 235 CQNGG 239
             +  
Sbjct: 319 HHHHH 323

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 331 CEKCFCRP-GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
            E                D D+C S+PC NG +C++++  Y C C P + G+ C  + ++
Sbjct: 28  REIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87

Query: 390 CESSPCLHG---ATCIDEVAT-FSCVCPKGLTGRLCETNIDDCE 429
                  +G     C D   T  SC C +G +      +     
Sbjct: 88  QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 131

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 25/146 (17%)

Query: 261 PCKHGSCVDKRAGY-FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 319
            CK   C  + A   F D   T        +   C     C NGG+CK     +    + 
Sbjct: 16  ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA-SSPCQNGGSCK-----DQLQSYI 69

Query: 320 CTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ----NKINGYTCVCA 375
           C C               P F G +C+   D+ L     NG   Q    +     +C C 
Sbjct: 70  CFCL--------------PAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCH 115

Query: 376 PGYSGKECSININECESSPCLHGATC 401
            GYS     ++       PC      
Sbjct: 116 EGYSLLADGVSCTPTVEYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 17/106 (16%)

Query: 260 DPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
            PC+  GSC D+   Y C C P + G+NC       +      NGG C+ Y  D T  + 
Sbjct: 53  SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGG-CEQYCSDHTGTKR 110

Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
           +C C                G++     V     +  PC      +
Sbjct: 111 SCRCH--------------EGYSLLADGVSCTPTVEYPCGKIPILE 142

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 24/130 (18%), Positives = 36/130 (27%), Gaps = 28/130 (21%)

Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
           R+C    C  +     +F    +          +   C+S+PC N G C D         
Sbjct: 15  RECKEEQCSFEEAR-EIFKDAERTKLFWISYS-DGDQCASSPCQNGGSCKDQLQSYICFC 72

Query: 152 ---YKGRYCELPEIGDCSSNPCLNDG---VCVDVYKGRY-------WELP----EIRDCT 194
              ++GR CE     D       N G    C D    +        + L           
Sbjct: 73  LPAFEGRNCET-HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 131

Query: 195 SNPCLNDGVC 204
             PC    + 
Sbjct: 132 EYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 21/100 (21%)

Query: 96  YKEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDCSSNPCLNDG----- 146
           Y +   C S+PC N G C       I      ++GR CE     D       N G     
Sbjct: 44  YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET-HKDDQLICVNENGGCEQYC 102

Query: 147 ----------VCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
                      C + Y      +         PC    + 
Sbjct: 103 SDHTGTKRSCRCHEGYSLLADGV-SCTPTVEYPCGKIPIL 141

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 89.0 bits (221), Expect = 4e-21
 Identities = 44/183 (24%), Positives = 64/183 (34%), Gaps = 42/183 (22%)

Query: 261 PCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNC 320
              HGS           C   Y G  C+     C   D       C            N 
Sbjct: 7   HHHHGSIEG---RSAVTCDDYYYGFGCNKF---CRPRDDFFGHYAC--------DQNGNK 52

Query: 321 TCPSGYHGKICE-------------------KCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
           TC  G+ G  C                     C C+ G+ G +CD    +C+ +P     
Sbjct: 53  TCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD----KCIPHPGCVHG 108

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECES-SPCLHGATCIDE-VATFSCVCPKGLTGR 419
            C      + C+C   + G+ C  ++N C +  PCL+G TC +     + C CP+G +G 
Sbjct: 109 IC---NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165

Query: 420 LCE 422
            CE
Sbjct: 166 NCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 46/184 (25%)

Query: 231 CVNPCQNGGKCNEDETGNYDCTCDALHTG----------DPCKHGSCVDKRAGYFCDCPP 280
             +   + G       G    TCD  + G          D        D+       C  
Sbjct: 3   GSHHHHHHGSIE----GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQ--NGNKTCME 56

Query: 281 TYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE-------- 332
            + G  C+  +            G+CK           +C C  G+ G  C+        
Sbjct: 57  GWMGPECNRAICRQ---GCSPKHGSCKLP--------GDCRCQYGWQGLYCDKCIPHPGC 105

Query: 333 ---------KCFCRPGFAGDHCDVDFDECLSN-PCFNGATCQNK-INGYTCVCAPGYSGK 381
                    +C C   + G  CD D + C ++ PC NG TC N   + Y C C  GYSG 
Sbjct: 106 VHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165

Query: 382 ECSI 385
            C I
Sbjct: 166 NCEI 169

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 41/181 (22%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 165 CSSNPCLNDGVCVDVYKGR----YWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIR 220
             S+   + G             Y+     + C            D+       E     
Sbjct: 2   RGSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGP 61

Query: 221 DCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGD---------PCKHGSCVDKR 271
           +C    C   C       G C        DC C     G           C HG C +  
Sbjct: 62  ECNRAICRQGC---SPKHGSCKLP----GDCRCQYGWQGLYCDKCIPHPGCVHGICNE-- 112

Query: 272 AGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 331
             + C C   +GG+ C  +L  C     CLNGGTC     +    ++ C+CP GY G  C
Sbjct: 113 -PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC----SNTGPDKYQCSCPEGYSGPNC 167

Query: 332 E 332
           E
Sbjct: 168 E 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 44/181 (24%)

Query: 17  NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
           +   + G       G    TCD  +                C        C         
Sbjct: 5   HHHHHHGSIE----GRSAVTCDDYYY------------GFGCNKF-----CRPRDDFFGH 43

Query: 77  ATCRPQLTEQLYECVCPPGYK----EIRDCTSNPCLNDGVCVWMFDVTIQV-YKGRYCEL 131
             C     +Q     C  G+         C        G C    D   Q  ++G YC+ 
Sbjct: 44  YAC-----DQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD- 97

Query: 132 PEIGDCSSNPCLNDGVCVDVYK--------GRYCELPEIGDCSSNPCLNDGVCVDVYKGR 183
                C  +P    G+C + ++        G+ C+       +  PCLN G C +    +
Sbjct: 98  ----KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDK 153

Query: 184 Y 184
           Y
Sbjct: 154 Y 154

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 8/77 (10%)

Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
             S+   +  +           C   Y G  C+     C       G    D+    +  
Sbjct: 2   RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQ--NGNKT 53

Query: 412 CPKGLTGRLCETNIDDC 428
           C +G  G  C   I   
Sbjct: 54  CMEGWMGPECNRAICRQ 70

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 284 GKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGD 343
           G  C V          C   GTC      +    F+C C SG+ G+ C++          
Sbjct: 6   GDQCLVLPLEHPCASLCCGHGTCI-----DGIGSFSCDCRSGWEGRFCQRE--------- 51

Query: 344 HCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCID 403
              V F  C  +       C  ++    C CAPGY   +  +  +     PC      ++
Sbjct: 52  ---VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108

Query: 404 E 404
           +
Sbjct: 109 K 109

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 342 GDHC-DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS--ININECESSPCLHG 398
           GD C  +  +   ++ C    TC + I  ++C C  G+ G+ C   ++   C        
Sbjct: 6   GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65

Query: 399 ATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
             C++EV    C C  G              
Sbjct: 66  HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 20/115 (17%)

Query: 253 CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNGGTCKPYLV 311
            +       C HG+C+D    + CDC   + G+ C  E++      D       C     
Sbjct: 14  LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCL---- 69

Query: 312 DETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK 366
            E      C+C               PG+      +     +  PC        K
Sbjct: 70  -EEVGWRRCSCA--------------PGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 377 GYSGKECSIN-INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
              G +C +  +    +S C    TCID + +FSC C  G  GR C+  +    
Sbjct: 3   HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLN 56

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININEC---ESSPCLHGATCID 403
                C+S PC +  +CQ+ I GYTC C+PGY G  C +  NEC    +  C H   C+ 
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF--CLP 60

Query: 404 EVATFSCVCPKGLTGRLCETNIDDC 428
              +++C C +G             
Sbjct: 61  GQESYTCSCAQGYRLGEDHKQCVPH 85

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%)

Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
           CL+ G+C+  +              GY       C C PG+ G +C++  +EC       
Sbjct: 13  CLHNGSCQDSI-------------WGY------TCTCSPGYEGSNCELAKNECHPERTDG 53

Query: 360 GA-TCQNKINGYTCVCAPGYSGKECSININECESSPC 395
               C      YTC CA GY   E        +   C
Sbjct: 54  CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 259 GDPCK------HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 312
           G PC       +GSC D   GY C C P Y G NC +    C    T      C P    
Sbjct: 5   GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLP---- 60

Query: 313 ETQHRFNCTCPSGY-HGKICEKCFCRPGFAGDHC 345
             Q  + C+C  GY  G+  ++C      A    
Sbjct: 61  -GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
           VD D+C SNPC NG +C++ IN Y C C  G+ GK C +
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 16/38 (42%), Positives = 28/38 (73%)

Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           ++ ++CES+PCL+G +C D++ ++ C CP G  G+ CE
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 299 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCF 358
            C +  T   Y   ++  R              E C+C  G A  H  V    C    CF
Sbjct: 5   ICRDEKTQMIYQQHQSWLR------PVLRSNRVEYCWCNSGRAQCHS-VPVKSCSEPRCF 57

Query: 359 NGATCQNKI--NGYTCVCAPGYSGKECSININE 389
           NG TCQ  +  + + C C  G++GK C I+   
Sbjct: 58  NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 11/95 (11%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
           +  CR             +    P               C C  G +    S+ +  C  
Sbjct: 3   QVICRDEKTQMIYQ--QHQSWLRPVLRSNRV------EYCWCNSGRAQC-HSVPVKSCSE 53

Query: 393 SPCLHGATCIDEVAT--FSCVCPKGLTGRLCETNI 425
             C +G TC   +    F C CP+G  G+ CE + 
Sbjct: 54  PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 65/354 (18%), Positives = 93/354 (26%), Gaps = 54/354 (15%)

Query: 79  CRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCS 138
             P   +  Y+  C  G    R+     C    + V    +T QV       + E     
Sbjct: 351 ALPDTLKVTYDSFCSNGVTH-RNQPRGDCDGVQINV---PITFQVKVTATECIQEQSFVI 406

Query: 139 SNPCLNDGVCVDVYKGRYCELPEIGD----CSSNPCLNDGVCVDVYKGRYWELPEIRDCT 194
                 D V V V     C   +       C     L  G+C     G   +  E +   
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICR-CDTGYIGKNCECQTQG 465

Query: 195 SNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCD 254
            +    +G C  +           + DC    CL    +           E    +C   
Sbjct: 466 RSSQELEGSCRKDNNSII---CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERY 522

Query: 255 ALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELT----GCVGPDTCLNGGTCKPYL 310
                     G C   +    C C P + G  C  E T           C   G C+   
Sbjct: 523 NGQVCGGPGRGLCFCGK----CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN- 577

Query: 311 VDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGY 370
                    C C SGY   +C++C   P                +PC    +C       
Sbjct: 578 --------VCECHSGYQLPLCQECPGCP----------------SPCGKYISC-----AE 608

Query: 371 TCVCAPGYSGKECSIN-INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET 423
                 G  GK CS        S+  + G TC +     S  C    T    + 
Sbjct: 609 CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE---RDSEGCWVAYTLEQQDG 659

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 48/303 (15%), Positives = 71/303 (23%), Gaps = 49/303 (16%)

Query: 126 GRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKG--- 182
           G        GDC     +N  +   V       + E           D V V V      
Sbjct: 367 GVTHRNQPRGDCD-GVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425

Query: 183 -RYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKC 241
               +  +   C     L  G+C                 C +     +C    Q     
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGICR----------------CDTGYIGKNCECQTQGRSSQ 469

Query: 242 NEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCL 301
             + +   D           C  G C+   +           G+ C  +   C   +  +
Sbjct: 470 ELEGSCRKDNNSIICSGLGDCVCGQCLCHTS---DVPGKLIYGQYCECDTINCERYNGQV 526

Query: 302 NGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
            GG  +            C C  G+ G  C+      G                 C    
Sbjct: 527 CGGPGRGLCFCGK-----CRCHPGFEGSACQCERTTEGCLNPR---------RVECSGRG 572

Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
            C+       C C  GY    C         SPC    +C +          KG  G+ C
Sbjct: 573 RCRC----NVCECHSGYQLPLCQEC--PGCPSPCGKYISCAE-----CLKFEKGPFGKNC 621

Query: 422 ETN 424
              
Sbjct: 622 SAA 624

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 43/250 (17%), Positives = 62/250 (24%), Gaps = 39/250 (15%)

Query: 192 DCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDC 251
           +  ++     G C             ++         +  +             T     
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV----TVQVLP 421

Query: 252 TCDALHTGDPCKHGSCVDKRAGY--FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPY 309
            C+            C  K       C C   Y GKNC  +  G    +     G+C+  
Sbjct: 422 QCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELE---GSCRK- 477

Query: 310 LVDETQHRFNCTCPSGYHGKICEKCFCRPG------FAGDHCDVDFDECLSNPCFNGATC 363
                    N    SG    +C +C C           G +C+ D   C     +NG  C
Sbjct: 478 -------DNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC---ERYNGQVC 527

Query: 364 QNKINGY----TCVCAPGYSGKECSININEC-----ESSPCLHGATCIDEVATFSCVCPK 414
                G      C C PG+ G  C                C     C        C C  
Sbjct: 528 GGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS 583

Query: 415 GLTGRLCETN 424
           G    LC+  
Sbjct: 584 GYQLPLCQEC 593

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 55/349 (15%), Positives = 87/349 (24%), Gaps = 61/349 (17%)

Query: 19  CQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGAT 78
           C NG        G+ D           + +       +     I  Q             
Sbjct: 364 CSNGVTHRNQPRGDCDG--------VQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415

Query: 79  CRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCS 138
                 + L +C C    +       + C   G            Y G+ CE        
Sbjct: 416 T----VQVLPQCECRCRDQS---RDRSLCHGKGFLECGICRCDTGYIGKNCECQT---QG 465

Query: 139 SNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----EIRDCT 194
            +    +G C        C       C    C    V   +  G+Y E      E  +  
Sbjct: 466 RSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQ 525

Query: 195 SNPCLNDGVCVDEV------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGN 248
                  G+C          ++G   +       T+  CLN     C   G+C       
Sbjct: 526 VCGGPGRGLCFCGKCRCHPGFEGSACQCE----RTTEGCLNPRRVECSGRGRCR-----C 576

Query: 249 YDCTCDALHTGDPC-----------KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGP 297
             C C + +    C           K+ SC +              GKNCS    G    
Sbjct: 577 NVCECHSGYQLPLCQECPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPGLQLS 631

Query: 298 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD 346
           +  + G TCK         R +  C   Y  +  +       +  +  +
Sbjct: 632 NNPVKGRTCKE--------RDSEGCWVAYTLEQQDGMDRYLIYVDESRE 672

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 35/202 (17%), Positives = 49/202 (24%), Gaps = 23/202 (11%)

Query: 248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 307
            YD  C    T      G C   +               C  E +  +      +  T +
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 418

Query: 308 PYLVDETQHRFNCTCPSGYHGK---ICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
                E + R      S  HGK    C  C C  G+ G +C+       S          
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 478

Query: 365 NKIN---------GYTCVCAPG------YSGKECSININECE---SSPCLHGATCIDEVA 406
           N               C+C           G+ C  +   CE      C      +    
Sbjct: 479 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF-- 536

Query: 407 TFSCVCPKGLTGRLCETNIDDC 428
              C C  G  G  C+      
Sbjct: 537 CGKCRCHPGFEGSACQCERTTE 558

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 4/117 (3%)

Query: 312 DETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYT 371
           D  +  ++  C +G   +   +  C                 +      +     +    
Sbjct: 354 DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTD 413

Query: 372 CVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
            V        EC       + S C         +    C C  G  G+ CE      
Sbjct: 414 IVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGR 466

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 64.5 bits (156), Expect = 4e-11
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
              R  F G   DV     L+ P  +G               P   G        E E  
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK-------LDDEPPNSGGGSPCEAGEEGEGG 196

Query: 394 PCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
            CL+G  C        C C + G  G+ C    ++ 
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 1/88 (1%)

Query: 317 RFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-A 375
           R   +          +     P   G       +E     C NG  C    +   C C  
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSR 217

Query: 376 PGYSGKECSININECESSPCLHGATCID 403
            G+ GK+CS    E  ++       C D
Sbjct: 218 TGFRGKDCSQGKEEYIATFKGSEYFCYD 245

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 39/289 (13%), Positives = 62/289 (21%), Gaps = 48/289 (16%)

Query: 98  EIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYC 157
            ++   + P  +  V     D       G         +     CLN GVC  V     C
Sbjct: 158 RVQSSLALPVDSGEVK---LDDEPPNSGGGSPC-EAGEEGEGGVCLNGGVCSVVDDQAVC 213

Query: 158 ELPEIG-----------DCSSNPCLNDGVCVDVYKGRYWELP-----EIRDCTSNPCL-- 199
           +    G           +  +    ++  C D+ +              +    N  +  
Sbjct: 214 DCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLH 273

Query: 200 ----NDGVCVDEVYKGRYW-------ELPEIRDCTSNPCLND----CVNPCQNGGKCNED 244
                D V +  +  G             E      N   ND     V   +N  +    
Sbjct: 274 TGKSADYVNL-ALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTIS 332

Query: 245 ETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPT--YGGKNCSVELTGCVGPDTCLN 302
             G    T                     Y    P T    G   S    GC+  +    
Sbjct: 333 VDGILTTTGYTQEDYTMLGSDDFF-----YVGGSPSTADLPGSPVSNNFMGCL-KEVVYK 386

Query: 303 GGTCKPYLVDETQHRFNCTCPSGYHGKICE--KCFCRPGFAGDHCDVDF 349
               +  L    +         G     CE         F      +  
Sbjct: 387 NNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 435

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 337  RPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININECESSPC 395
              G     C+     C  + C N   C  + +G++C C    +SG  C+        S  
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 2/105 (1%)

Query: 325 GYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS 384
           G   +                +  +  C+ +   +G   ++           G       
Sbjct: 558 GGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDG-QSKDIRQMAEVQSTAGVKPSCSR 616

Query: 385 ININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
                C S+PC +   C D    + C C   G  GR CE      
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININECE 391
           +     G            CLSNPC N   C++  N Y C C   GY G+ C        
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662

Query: 392 SSPCLHGATCIDEV 405
               +     +  V
Sbjct: 663 YDGSMFMKIQLPVV 676

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 13/107 (12%)

Query: 323  PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE 382
                +  + +    + GF G    VD +  L +   +   C  +I             + 
Sbjct: 965  AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQI------------ERG 1012

Query: 383  CSININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
            C      C+   C +   C+ +   FSC C     +G LC       
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 33/165 (20%), Positives = 48/165 (29%), Gaps = 22/165 (13%)

Query: 258 TGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
               C  G+CV+    Y CDCPP +          GCV   +       +P         
Sbjct: 8   DPTTCISGNCVNTPGSYICDCPPDFELNPTR---VGCVDTRSGNCYLDIRP---RGDNGD 61

Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
             C+   G               +   C     +    PC              C    G
Sbjct: 62  TACSNEIGVGV------------SKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109

Query: 378 YSGKECSIN---INECESSP-CLHGATCIDEVATFSCVCPKGLTG 418
           +     ++    I+EC+  P    G  CI+   +F C CP G   
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 2/97 (2%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY--SGKECSININEC 390
            C C P F  +   V   +  S  C+     +       C    G   S   C  ++ + 
Sbjct: 25  ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84

Query: 391 ESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
             +PC              C   +G         ++D
Sbjct: 85  WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVAT 407
           D +ECL         C N    Y C C P +      +   +  S  C        +   
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61

Query: 408 FSCVCPKG--LTGRLCETNIDDCE 429
            +C    G  ++   C  ++    
Sbjct: 62  TACSNEIGVGVSKASCCCSLGKAW 85

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/148 (15%), Positives = 34/148 (22%), Gaps = 29/148 (19%)

Query: 247 GNYDCTCDALHTGDPCK-------------HGSCVDKRAGYFCDCPPTYGGKNCSVELTG 293
           G+Y C C      +P +                         C      G        + 
Sbjct: 22  GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK----ASC 77

Query: 294 CVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL 353
           C                V+ ++++  C    G+                     D DEC 
Sbjct: 78  CCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI----------TVIL-EDIDECQ 126

Query: 354 SNP-CFNGATCQNKINGYTCVCAPGYSG 380
             P    G  C N    + C C  GY  
Sbjct: 127 ELPGLCQGGKCINTFGSFQCRCPTGYYL 154

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 43/280 (15%), Positives = 72/280 (25%), Gaps = 59/280 (21%)

Query: 198 CLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDE-TGNYDCTCDAL 256
              +G  +  V +    ++ E+    + P      +    GG       T      C+A 
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQ 192

Query: 257 HTGDPCK--------HGSCVDKRAGYFCDCPPTYGGKNCSVE----------LTGCVGPD 298
             G  C         +G C +      C CPP + G+ C                C G +
Sbjct: 193 KWGPECNHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250

Query: 299 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE-------------------------- 332
            C +   C P         + C+C +G+ G  C                           
Sbjct: 251 GCKSYVFCLP-------DPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR 303

Query: 333 --KCFCRPGFAGDHCDVDF-DECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININ 388
              C C PG+ G  C+ +                +     +  +C A G+          
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTL 363

Query: 389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
                  LH          FS            ++ +  C
Sbjct: 364 VKPDGTVLHPKDFNHTD-HFSVAIFTIHRILPPDSGVWVC 402

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 12/143 (8%)

Query: 286 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------KCFCRPG 339
           +  + L      +  ++      Y    +  +    C    H  +C        C C   
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320

Query: 340 FAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGA 399
             G  C          P  +  +      G    C P  S      N+ + E   C +G 
Sbjct: 321 TTGPDCGKCKKNYQGRPW-SPGSYLPIPKGAANACIPSISSIGT--NVCDNELLHCQNGG 377

Query: 400 TCIDEVATFSCVCPKGLTGRLCE 422
           TC +      C+CP   TG LCE
Sbjct: 378 TCHN---NVRCLCPAAYTGILCE 397

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 15/155 (9%)

Query: 189 EIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN--DCVNPCQNGGKCN--ED 244
           ++R     P + +    +      ++ + +I+      C           +   C    +
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320

Query: 245 ETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 304
            TG     C   + G P   GS +    G    C P+      +V          C NGG
Sbjct: 321 TTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL---LHCQNGG 377

Query: 305 TCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPG 339
           TC         +   C CP+ Y G +CEK  C   
Sbjct: 378 TC--------HNNVRCLCPAAYTGILCEKLRCEEA 404

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 28/154 (18%), Positives = 41/154 (26%), Gaps = 35/154 (22%)

Query: 266 SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG 325
            CV   +   C+C     G +C              + G+  P                 
Sbjct: 305 VCVYDNSKLTCECEHNTTGPDCGKCKKNYQ--GRPWSPGSYLP----------------- 345

Query: 326 YHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
                     C P  +    +V  +E     C NG TC    N   C+C   Y+G  C  
Sbjct: 346 --IPKGAANACIPSISSIGTNVCDNEL--LHCQNGGTC---HNNVRCLCPAAYTGILC-- 396

Query: 386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGR 419
                E   C    +C  +  +     P G    
Sbjct: 397 -----EKLRCEEAGSCGSD--SGQGAPPHGTHHH 423

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS-ININECESSPCLHGATCIDEV 405
           VD DEC          C N    Y C C  GY       ++ +EC         TC + +
Sbjct: 3   VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62

Query: 406 ATFSCVCPKGLTG 418
             F C C +G   
Sbjct: 63  GGFECTCEEGFEP 75

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 333 KCFCRPGFAGDHCD-VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
           +C C  G+     + VD DEC         TC+N I G+ C C  G+  
Sbjct: 27  RCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 47/238 (19%), Positives = 68/238 (28%), Gaps = 37/238 (15%)

Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
            + +       C  E  K    +    +D        DC   CQ   + N     N + T
Sbjct: 395 VSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT 454

Query: 253 CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 312
            +       C    C     G  C+C       +   E +   G   C   G C      
Sbjct: 455 FE-------CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG--- 504

Query: 313 ETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL---SNPCFNGATCQNKING 369
                  C C S   GKI           G +C+ D   C+      C     C      
Sbjct: 505 ------QCVCHSSDFGKIT----------GKYCECDDFSCVRYKGEMCSGHGQCSC---- 544

Query: 370 YTCVCAPGYSGKECSININECESSPCLHGATCID--EVATFSCVC-PKGLTGRLCETN 424
             C+C   ++G  C+      ++    +G  C    +    SCVC   G  G  CE  
Sbjct: 545 GDCLCDSDWTGYYCNCTTR-TDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKC 601

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 35/227 (15%), Positives = 49/227 (21%), Gaps = 29/227 (12%)

Query: 212 RYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKR 271
              +LPE    + N    +                     + +A   G P +       +
Sbjct: 358 EVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIK 417

Query: 272 AGYFCDCPPTYGGKNCS--VELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 329
              F D        +C    +         C NG                C C  G+ G 
Sbjct: 418 PVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT--------FECGVCRCGPGWLGS 469

Query: 330 ICEKCFCRPGFAGDHCDVDFDECLSNP-CFNGATCQNKINGYTCVCAPGYSGKECS---- 384
            CE   C           +       P C     C        CVC     GK       
Sbjct: 470 QCE---CSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSDFGKITGKYCE 522

Query: 385 ---ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
               +    +   C     C        C+C    TG  C       
Sbjct: 523 CDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCNCTTRTD 565

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 28/164 (17%), Positives = 44/164 (26%), Gaps = 35/164 (21%)

Query: 258 TGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
              PC +G C +    + C+C                +   TC                 
Sbjct: 8   ESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI-KGTCWQTVID----------- 55

Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
             C                        C         +PC               +C  G
Sbjct: 56  GRCEINING------------ATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKG 95

Query: 378 YSGKECS--ININECESSPCL-HGATCIDEVATFSCVCPKGLTG 418
           YS  + +   +I+ECE  P +     C++   +F C CP G+T 
Sbjct: 96  YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 20/149 (13%)

Query: 233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELT 292
           +PC NG   N    G++ C C +  T DP K   C++        C  T     C + + 
Sbjct: 10  SPCINGVCKNSP--GSFICECSSESTLDPTKT-ICIETIK---GTCWQTVIDGRCEININ 63

Query: 293 GCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDEC 352
           G      C +      +    T  + +  C  GY      +C             D DEC
Sbjct: 64  GATLKSQCCSSLGA-AWGSPCTLCQVDPICGKGYSRIKGTQC------------EDIDEC 110

Query: 353 LSNPCF-NGATCQNKINGYTCVCAPGYSG 380
              P       C N    + C C  G + 
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVAT 407
           D DEC S+PC NG  C+N    + C C+   +         E     C            
Sbjct: 3   DIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GR 57

Query: 408 FSCVCPKGLTGRLCETNIDDCE 429
                        C +++    
Sbjct: 58  CEININGATLKSQCCSSLGAAW 79

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
            C C      D       E +   C+                       +C  ++     
Sbjct: 25  ICECSSESTLDPTKTICIETIKGTCWQTVIDGR----CEININGATLKSQCCSSLGAAWG 80

Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCET--NIDDCE 429
           SPC               +C KG +        +ID+CE
Sbjct: 81  SPCTLC--------QVDPICGKGYSRIKGTQCEDIDECE 111

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 337 RPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA-PGYSGKECSININECESSPC 395
             G     C+     C  + C N   C  + +G++C C+   +SG  C+        S  
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232

Query: 396 LHGATC 401
               T 
Sbjct: 233 GGQITY 238

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 13/107 (12%)

Query: 323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE 382
               +  + +    + GF G         CL++   NG       +        G   + 
Sbjct: 133 AKETYKSLPKLVHAKEGFQG---------CLASVDLNGRLPDLISDALF---CNGQIERG 180

Query: 383 CSININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
           C      C+   C +   C+ +   FSC C     +G LC       
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 227

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 23/129 (17%)

Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLS---NPCFNGATCQNKINGYTCVC 374
             C C  G+                + C  D +EC +     C   + C N    Y CVC
Sbjct: 19  TACRCNPGFSSFSE-----IITTPMETC-DDINECATLSKVSCGKFSDCWNTEGSYDCVC 72

Query: 375 APGYSGKECSIN-----------INECES--SPCLHGATCIDEVATFSCVCPKGLTGRLC 421
           +PGY     +             ++EC S    C     C + V ++SC C  G   R  
Sbjct: 73  SPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG 132

Query: 422 E-TNIDDCE 429
              N  D  
Sbjct: 133 IPNNQKDTV 141

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 13/129 (10%)

Query: 273 GYFCDCPPTYGGKNCSVELTG--CVGPDTCLNGGTCKPYLVDE---TQHRFNCTCPSGYH 327
              C C P +   +  +      C   + C            +   T+  ++C C  GY 
Sbjct: 18  ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYE 77

Query: 328 GKICEKCFCRPGFAGDHCDVDFDECLSNP--CFNGATCQNKINGYTCVCAPGYSGKECS- 384
                K F       + C  D DEC S    C +   C N +  Y+C C PG+  +    
Sbjct: 78  PVSGAKTFKNES--ENTC-QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIP 134

Query: 385 --ININECE 391
                  CE
Sbjct: 135 NNQKDTVCE 143

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 348 DFDECLSNPCFNG-ATCQNKINGYTCVCAPGYSGKECS----ININECESSPCL-HGATC 401
           D DEC  +P   G   C N    + C C  GY          ++I+EC+  P L  G  C
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61

Query: 402 IDEVATFSCVCPKG 415
            +   ++ C CP G
Sbjct: 62  HNTEGSYRCECPPG 75

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 27/180 (15%), Positives = 41/180 (22%), Gaps = 21/180 (11%)

Query: 250 DCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV-----ELTGCVGPDTCLNGG 304
           +    A+     C +G  V     + C C       + +      E         C   G
Sbjct: 1   EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60

Query: 305 TCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
            C         + + C C  GY                   DV                 
Sbjct: 61  QCIENPDPAQVNMYXCGCIEGYTLXEDTCV----------LDVCQYXNCGESGECIVEYL 110

Query: 365 NKINGYTCVCAPGYSGKECS------ININECESSPCLHGATCIDEVATFSCVCPKGLTG 418
           ++I    C CA G                  C+         C +    + C C +G T 
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 21/114 (18%), Positives = 26/114 (22%), Gaps = 9/114 (7%)

Query: 225 NPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGG 284
               +  VN    G   +          C     G        +   +        T   
Sbjct: 81  GIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNT-ILXTPQN 139

Query: 285 KNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
                       P  C NGG C          R  C CP G+HG  CE      
Sbjct: 140 AIFFKTCQQAECPGGCRNGGFCNE--------RRICECPDGFHGPHCEGTKHHH 185

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY---SGKECSININEC 390
                        +  +ECL N       C +   GY C+C  G+   + + C  +I+EC
Sbjct: 15  IPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRC-EDIDEC 72

Query: 391 ES-SPCLHGATCIDEVATFSCVCPKG 415
           +    C     C++    + C C +G
Sbjct: 73  QDPDTCSQ--LCVNLEGGYKCQCEEG 96

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 348 DFDECLSNP--CFNGATCQNKINGYTCVCAPGYS----GKECSININECESSPCLHGATC 401
           D DEC   P  C     C+N    + C C  GY      K C  +I+EC  + C     C
Sbjct: 2   DVDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCAQ--LC 57

Query: 402 IDEVATFSCVC 412
           ++    ++C C
Sbjct: 58  VNYPGGYTCYC 68

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 6/72 (8%)

Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGY----SGKECSININECESSPCLHGATCID 403
             + C  N       CQ       C C  GY     G+ C       E   C  G  C +
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTN 59

Query: 404 EVATFSCVCPKG 415
               F C C  G
Sbjct: 60  SEGAFQCWCEAG 71

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS---GKECSININE 389
            C C  GFA    +    +   N     A C       +C C  GY    G  C  +I+E
Sbjct: 25  LCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFIC-TDIDE 82

Query: 390 CESSPCLHGATCIDEVATFSCVCPKG 415
           CE+     G  C +   TF C+C   
Sbjct: 83  CENGGFCSG-VCHNLPGTFECICGPD 107

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 348 DFDECLSNPCFNGATCQNKING-YTC-VCAPGYSGK--------ECSININECESSPCLH 397
           D D CLSNPCF GA C +  +G ++C  C  G+ G         EC++  + C       
Sbjct: 2   DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICF--STSK 59

Query: 398 GATCIDEVATFSC-VCPKGLTG 418
              C++    F C  CP    G
Sbjct: 60  VPRCVNTQPGFHCLPCPPRYRG 81

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGY--SGKECSININECESSPCLHGATCIDEVAT 407
           +ECL N       C +   GY C+C  G+    +    +I+EC+  P      C++    
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 59

Query: 408 FSCVCP 413
           + C C 
Sbjct: 60  YKCQCE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.86
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.86
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.85
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.8
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.77
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.75
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.75
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.72
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.72
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.71
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.7
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.6
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.56
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.56
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.55
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.53
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.53
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.51
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.51
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.49
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.46
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.44
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.42
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.42
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.36
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.35
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.34
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.34
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.32
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.3
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.26
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.24
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.21
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.21
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.2
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.19
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.18
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.17
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.16
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.16
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.15
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.15
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.14
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.1
2vh0_B	134	Activated factor XA light chain; serine protease,	99.08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.05
2vh0_B	134	Activated factor XA light chain; serine protease,	99.02
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.01
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.97
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.93
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.93
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.89
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.84
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.71
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.63
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.61
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.56
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.4
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.39
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.28
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.27
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.27
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.22
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.2
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.09
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.07
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.06
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.0
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.93
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.6
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.57
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.56
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.55
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.52
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.44
1ob1_C	99	Major merozoite surface protein; immune system, im	97.4
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.4
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.37
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.35
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.27
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.26
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.1
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.97
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.84
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	96.76
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.73
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.68
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.53
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.51
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.43
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.4
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.37
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	96.34
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.33
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.31
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.31
1ob1_C	99	Major merozoite surface protein; immune system, im	95.91
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.75
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	95.71
2wph_E	59	Coagulation factor IXA light chain; serine proteas	95.5
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	95.23
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.09
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.05
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.04
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	94.99
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.94
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	94.86
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	94.85
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	94.78
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	94.54
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.47
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	94.47
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	94.47
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	94.46
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	94.43
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	94.29
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	94.26
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	93.75
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	93.54
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	93.38
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	93.09
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	92.65
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	92.3
1szb_A	170	Mannose binding lectin-associated serine protease-	92.09
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	91.43
1szb_A	170	Mannose binding lectin-associated serine protease-	91.26
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	90.89
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	89.61
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	89.21
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	88.03
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	86.56
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	86.44
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	85.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	84.07
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	83.88
2wph_E	59	Coagulation factor IXA light chain; serine proteas	83.47

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.86  E-value=1.7e-26  Score=211.47  Aligned_cols=228  Identities=14%  Similarity=0.081  Sum_probs=176.3

Q ss_pred             CCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc------ccCC
Q psy11059         28 DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK------EIRD  101 (429)
Q Consensus        28 ~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~------~~~~  101 (429)
                      +..|++++.+.+|..         .+.|.+++..+.  ++.  .+|.++|+|+  +..++|+|.|++||+      ++++
T Consensus         8 n~~Gg~s~~~~pgg~---------~~~g~~~~~n~~--~~~--~~c~ngG~C~--~g~~~y~C~Cp~Gf~G~~Ce~ni~e   72 (267)
T 4fbr_A            8 NQWGGSQATWNPGGL---------WLIGARDKQNVV--ALD--IKSDDGGKTL--KGTMTYNGEGPIGFRGTLSSANNYT   72 (267)
T ss_dssp             EECSSTTSCCEEEEE---------EECCCCSSCCEE--EEE--EECSSTTSEE--EEEEEETTSCCEEEEEEECSTTEEE
T ss_pred             ecCCcccCCcCCCCc---------eeeccccccccc--cCC--CCcCCCCeec--CCCCCeEEeCCCCcccccccccccc
Confidence            677888898988832         122888887765  444  4889999999  999999999999998      5666


Q ss_pred             ------CCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCCCCCCCCCeEeeCCCCccccCCCCCCCCCCCCCCCce
Q psy11059        102 ------CTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGV  175 (429)
Q Consensus       102 ------C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C~~~~~~~C~~~~C~~~~~  175 (429)
                            |.+.||+++++|          |.|.+|+  .+++|.++||.++|+|++...+|.|+                 
T Consensus        73 c~~~~~c~s~pC~nggtc----------~~G~~c~--~~~eC~s~pC~ngG~C~~~~~sy~C~-----------------  123 (267)
T 4fbr_A           73 VENQWGGTSAPWQPGGVW----------VLGARDK--QNIVAVSIKSNDGGKTLTGTTTYNGE-----------------  123 (267)
T ss_dssp             EEEESSSTTSCEEEEEEE----------ECCCCSS--CCEEEEEEECSSTTSEEEEEEEETTS-----------------
T ss_pred             cccccCcCCCcccCCCee----------eccCccc--cccccCCCCCCCCCEEecCCccEEee-----------------
Confidence                  778888888777          5689998  56799999999999999999999999                 


Q ss_pred             ecCCcccCCcccCCCCC------CCCCCCCCCCEEeeCCCCeeeccCCCCCCCCCCCCCCCCCCCCCCCcEeccCCCCCe
Q psy11059        176 CVDVYKGRYWELPEIRD------CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNY  249 (429)
Q Consensus       176 C~~~~~G~~c~~~~~~~------C~~~~C~~~~~C~~~~~~~C~C~~~g~~~C~~~~C~~~~c~~C~~~g~C~~~~~~~~  249 (429)
                      |+.+|+|..|+. ++++      |.+.||.+.++|++....+     ..+ .|..        .+|.++|+| .+...+|
T Consensus       124 C~~Gf~G~~Ce~-~~d~C~n~~~c~s~pC~ngg~c~~G~~c~-----~~i-~c~~--------~~c~ngg~C-~dg~~~y  187 (267)
T 4fbr_A          124 GPIGFKSEVTDG-DTYSVENQWGGSAAPWHSGGVWVLGTRGK-----QNV-INVD--------AKSNDGGKT-LSGTMTY  187 (267)
T ss_dssp             CCEEEEEEECCC-CEEEEEEECSSTTSCCEEEEEEECCSSTT-----SCE-EEEE--------EECSSTTSE-EEEEEEE
T ss_pred             CCCCccccCCCC-CcccccccCCcCCccccCCcceecccccc-----ccc-ccCC--------CCCCCCCEe-eCCCCCe
Confidence            999999999998 8888      6677888888887644222     111 1222        369999999 7788899


Q ss_pred             eEeCCCCCcCCCCCCCc--ccc----------CCCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCC
Q psy11059        250 DCTCDALHTGDPCKHGS--CVD----------KRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR  317 (429)
Q Consensus       250 ~C~C~~g~~G~~C~~~~--C~~----------~~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~  317 (429)
                      +|.|++||+|..|+..+  |.+          ..+.+++.|..++.+..++         .+|.++++|    ++ ...+
T Consensus       188 ~C~Cp~Gf~G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~---------~~c~ngGtC----~d-g~~s  253 (267)
T 4fbr_A          188 NGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALN---------VASSDGGKT----LA-GTMI  253 (267)
T ss_dssp             TTSCCEEEEEEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEE---------EECSSTTSE----EE-EEEE
T ss_pred             EEeCCCCccccccccccceeccCCCccCCcccCCCeEEEecCCCCccccCC---------cCCCCCCEe----eC-CCcc
Confidence            99999999999887543  111          1234556677777555442         467889999    55 6678


Q ss_pred             eeeeCCCCccCC
Q psy11059        318 FNCTCPSGYHGK  329 (429)
Q Consensus       318 ~~C~C~~G~~G~  329 (429)
                      |+|.|++||+|+
T Consensus       254 y~CeCp~GF~G~  265 (267)
T 4fbr_A          254 YNGEGPIGFRAR  265 (267)
T ss_dssp             ETTSCCEEEEEE
T ss_pred             eeecCCCCcccc
Confidence            999999999875

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.86  E-value=9e-22  Score=165.37  Aligned_cols=125  Identities=32%  Similarity=0.812  Sum_probs=104.1

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQ   86 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~   86 (429)
                      .++|||++.++||+++|+|+ +..++|+|+|++||+            |..|+++++  +|. .++|.++++|+  +..+
T Consensus         3 ~dideC~~~~~~C~~~g~C~-~~~g~~~C~C~~Gy~------------G~~C~~~~~--~C~-~~~C~~~~~C~--~~~g   64 (135)
T 2vj3_A            3 QDVDECSLGANPCEHAGKCI-NTLGSFECQCLQGYT------------GPRCEIDVN--ECV-SNPCQNDATCL--DQIG   64 (135)
T ss_dssp             CCCCTTTSSSCSSSTTCEEE-ECSSSEEEECCTTEE------------STTSCEECC--TTT-TCCCCSSCEEE--ECSS
T ss_pred             cccccccCCCCCCCCCCEeE-CCCCCEEEECCCCCc------------CCcccccCc--cCC-CCCCCCCCEEe--CCCC
Confidence            47899966689999999999 999999999999999            999998888  999 89999999999  8889


Q ss_pred             CeeeeCCCCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCCCCCCCCCeEeeCCCCccccCCCCCCCC
Q psy11059         87 LYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCS  166 (429)
Q Consensus        87 ~~~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C~~~~~~~C~  166 (429)
                      +|+|+|++|                            |+|..|+. ++++|..++|.++++|++..+++.|.        
T Consensus        65 ~~~C~C~~G----------------------------~~G~~C~~-~~~~C~~~~C~~~g~C~~~~g~~~C~--------  107 (135)
T 2vj3_A           65 EFQCICMPG----------------------------YEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCE--------  107 (135)
T ss_dssp             CEEEECCTT----------------------------EESSSSCE-ECCTTTTCCSTTTCEEEECSSCEEEE--------
T ss_pred             CceeeCCCC----------------------------CcCCccee-cCCcccCCCcCCCCEeECCCCCeEEE--------
Confidence            999999888                            55666765 67788878888888888887778887        


Q ss_pred             CCCCCCCceecCCcccCCcccCCCCCCCCC
Q psy11059        167 SNPCLNDGVCVDVYKGRYWELPEIRDCTSN  196 (429)
Q Consensus       167 ~~~C~~~~~C~~~~~G~~c~~~~~~~C~~~  196 (429)
                               |..||+|..|+. +|++|...
T Consensus       108 ---------C~~G~~G~~C~~-~i~~C~~~  127 (135)
T 2vj3_A          108 ---------CPTGFTGHLCQV-DLHHILDA  127 (135)
T ss_dssp             ---------CCTTEESSSSCE-ECC-----
T ss_pred             ---------CCCCCcCCccCc-cCccccCC
Confidence                     788888888877 77887654

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.85  E-value=2.6e-21  Score=162.49  Aligned_cols=121  Identities=42%  Similarity=1.116  Sum_probs=106.4

Q ss_pred             CCCCCCC-CCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCC
Q psy11059        290 ELTGCVG-PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKIN  368 (429)
Q Consensus       290 ~~~~C~~-~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g  368 (429)
                      ++++|.. ..+|.++++|    ++ ..++|.|.|++||+|..|              +.++++|...||.++++|++..+
T Consensus         4 dideC~~~~~~C~~~g~C----~~-~~g~~~C~C~~Gy~G~~C--------------~~~~~~C~~~~C~~~~~C~~~~g   64 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKC----IN-TLGSFECQCLQGYTGPRC--------------EIDVNECVSNPCQNDATCLDQIG   64 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEE----EE-CSSSEEEECCTTEESTTS--------------CEECCTTTTCCCCSSCEEEECSS
T ss_pred             ccccccCCCCCCCCCCEe----EC-CCCCEEEECCCCCcCCcc--------------cccCccCCCCCCCCCCEEeCCCC
Confidence            5677873 3789999999    55 778899999998876654              45789999999999999999999


Q ss_pred             ceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCCCCCC
Q psy11059        369 GYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE  429 (429)
Q Consensus       369 ~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i~~C~  429 (429)
                      +|+|.|++||+|..|++++++|...+|.++++|+++.++|+|.|++||+|..|+++|++|+
T Consensus        65 ~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~i~~C~  125 (135)
T 2vj3_A           65 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHIL  125 (135)
T ss_dssp             CEEEECCTTEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCEECC---
T ss_pred             CceeeCCCCCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCccCcccc
Confidence            9999999999999998889999999999999999999999999999999999999999984

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.80  E-value=5.9e-24  Score=194.67  Aligned_cols=196  Identities=14%  Similarity=0.016  Sum_probs=116.2

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCC------CCCCCCCCCCCeEeeCCCCCCee
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQI------CTTAPPCLNGATCRPQLTEQLYE   89 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~------C~~~~~C~~~g~C~~~~~~~~~~   89 (429)
                      ..+|.++|+|+ +..++|+|+|++||+            |.+|+++++  +      |. +.||+++++|+  .   ...
T Consensus        37 ~~~c~ngG~C~-~g~~~y~C~Cp~Gf~------------G~~Ce~ni~--ec~~~~~c~-s~pC~nggtc~--~---G~~   95 (267)
T 4fbr_A           37 DIKSDDGGKTL-KGTMTYNGEGPIGFR------------GTLSSANNY--TVENQWGGT-SAPWQPGGVWV--L---GAR   95 (267)
T ss_dssp             EEECSSTTSEE-EEEEEETTSCCEEEE------------EEECSTTEE--EEEEESSST-TSCEEEEEEEE--C---CCC
T ss_pred             CCCcCCCCeec-CCCCCeEEeCCCCcc------------ccccccccc--ccccccCcC-CCcccCCCeee--c---cCc
Confidence            34899999999 999999999999999            666665555  4      44 55555555554  1   111


Q ss_pred             eeCCCCCcccCCCCCCCCCCCCeEecCCC---ce-eCCeeccCCCCCCCCC------CCCCCCCCCCeEeeCCCCccccC
Q psy11059         90 CVCPPGYKEIRDCTSNPCLNDGVCVWMFD---VT-IQVYKGRYCELPEIGD------CSSNPCLNDGVCVDVYKGRYCEL  159 (429)
Q Consensus        90 C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~---C~-~~g~~G~~C~~~~i~~------C~~~~C~~~g~C~~~~~g~~C~~  159 (429)
                      |.      ..++|++.||.++|+|++...   |. ++||+|.+|+. +|++      |.+.||.++++|+.   |..|+.
T Consensus        96 c~------~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~-~~d~C~n~~~c~s~pC~ngg~c~~---G~~c~~  165 (267)
T 4fbr_A           96 DK------QNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDG-DTYSVENQWGGSAAPWHSGGVWVL---GTRGKQ  165 (267)
T ss_dssp             SS------CCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCC-CEEEEEEECSSTTSCCEEEEEEEC---CSSTTS
T ss_pred             cc------cccccCCCCCCCCCEEecCCccEEeeCCCCccccCCCC-CcccccccCCcCCccccCCcceec---cccccc
Confidence            11      223555555666666655443   55 56666666655 5555      34445555555543   333442


Q ss_pred             CCCCCCCCCCCCCCce-----------ecCCcccCCcccCCCCCCC------CCCCCCCCEEeeCCCCeeeccCCCCCCC
Q psy11059        160 PEIGDCSSNPCLNDGV-----------CVDVYKGRYWELPEIRDCT------SNPCLNDGVCVDEVYKGRYWELPEIRDC  222 (429)
Q Consensus       160 ~~~~~C~~~~C~~~~~-----------C~~~~~G~~c~~~~~~~C~------~~~C~~~~~C~~~~~~~C~C~~~g~~~C  222 (429)
                      . + .|.+.||.++++           |+++|+|.+|+. +|++|.      +.+|.+++.++      +.| ..+.+..
T Consensus       166 ~-i-~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~-~i~ec~~~~~c~~~~c~~gG~~~------~~C-~~g~n~~  235 (267)
T 4fbr_A          166 N-V-INVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSP-DTYTVENQWGGSTAPWNPGGFWM------IGA-RNGQNVV  235 (267)
T ss_dssp             C-E-EEEEEECSSTTSEEEEEEEETTSCCEEEEEEEEET-TEEEEEEECSCTTSCCEEEEEEE------CCC-CTTCCEE
T ss_pred             c-c-ccCCCCCCCCCEeeCCCCCeEEeCCCCcccccccc-ccceeccCCCccCCcccCCCeEE------Eec-CCCCccc
Confidence            2 1 233445555554           455699999998 888854      44444444332      334 4442211


Q ss_pred             CCCCCCCCCCCCCCCCcEeccCCCCCeeEeCCCCCcCC
Q psy11059        223 TSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGD  260 (429)
Q Consensus       223 ~~~~C~~~~c~~C~~~g~C~~~~~~~~~C~C~~g~~G~  260 (429)
                      .-.       .+|.++|+| .+...+|+|.|++||+|.
T Consensus       236 ~c~-------~~c~ngGtC-~dg~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          236 ALN-------VASSDGGKT-LAGTMIYNGEGPIGFRAR  265 (267)
T ss_dssp             EEE-------EECSSTTSE-EEEEEEETTSCCEEEEEE
T ss_pred             cCC-------cCCCCCCEe-eCCCcceeecCCCCcccc
Confidence            111       257788888 666677888888888764

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.77  E-value=3.1e-20  Score=164.84  Aligned_cols=133  Identities=23%  Similarity=0.578  Sum_probs=102.3

Q ss_pred             CCCeeeeCCCCCCCC---CCccCCCCCCC---CCCCCCCCeeCCccccCCC-----CCeeeeCCCCccCCCCcccccCCC
Q psy11059        271 RAGYFCDCPPTYGGK---NCSVELTGCVG---PDTCLNGGTCKPYLVDETQ-----HRFNCTCPSGYHGKICEKCFCRPG  339 (429)
Q Consensus       271 ~~~~~C~C~~G~~g~---~c~~~~~~C~~---~~~C~~~~~C~~~~~~~~~-----~~~~C~C~~G~~G~~C~~C~C~~g  339 (429)
                      .++|+|.|++||+|.   .|+ ++++|..   ..+|.++++|    ++ ..     ++|.|.|++||+|..+        
T Consensus        22 ~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C----~~-~~~~~~~g~y~C~C~~G~~g~~~--------   87 (186)
T 1z1y_A           22 SNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQC----IE-NPDPAQVNMYXCGCIEGYTLXED--------   87 (186)
T ss_dssp             SSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEE----EE-CSSTTSSCSEEEEECTTEEEETT--------
T ss_pred             CCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEe----ec-CCCCcCCCCEECCCCCCCccCCC--------
Confidence            333444444444333   443 4567762   2779888999    55 55     7999999999987632        


Q ss_pred             ccCCCCccCCCcCCCCCcCCCCccc----cCCCceEEecCCCCCC-----CCccCC-CCCCCCCCC-CCCCEEccCCCCe
Q psy11059        340 FAGDHCDVDFDECLSNPCFNGATCQ----NKINGYTCVCAPGYSG-----KECSIN-INECESSPC-LHGATCIDEVATF  408 (429)
Q Consensus       340 ~~g~~C~~~i~~C~~~~C~~~~~C~----~~~g~~~C~C~~G~~G-----~~C~~~-~~~C~~~~C-~~~~~C~~~~~~~  408 (429)
                          .|  .+++|...||.++++|+    +..++|+|.|++||+|     ..|+.. +++|. .+| .++++|+++.++|
T Consensus        88 ----~C--~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n~~g~y  160 (186)
T 1z1y_A           88 ----TC--VLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ-LXCNTDNEVCXNVEGVY  160 (186)
T ss_dssp             ----EE--EEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC-CCCCTTTEEEEEETTEE
T ss_pred             ----CC--CCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc-ccccccCcceecCCCCe
Confidence                23  36899999999999999    8889999999999998     788632 58897 489 8899999999999


Q ss_pred             eeeCCCCCCCCCCCCC
Q psy11059        409 SCVCPKGLTGRLCETN  424 (429)
Q Consensus       409 ~C~C~~g~~G~~C~~~  424 (429)
                      +|.|++||+|..++..
T Consensus       161 ~C~C~~G~~g~~~~~~  176 (186)
T 1z1y_A          161 XCQCMEGFTFDXEXNV  176 (186)
T ss_dssp             EEEECTTCEEETTTTE
T ss_pred             eeECCCCCccCccccc
Confidence            9999999999988753

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.75  E-value=1.4e-19  Score=160.57  Aligned_cols=139  Identities=19%  Similarity=0.456  Sum_probs=118.7

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCC---CCCCCCCCeEeeCCCC-----C
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTT---APPCLNGATCRPQLTE-----Q   86 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~---~~~C~~~g~C~~~~~~-----~   86 (429)
                      ..+||.| |+|+ +..++|+|+|++||+|.         ++..|+ +++  +|..   .++|.++++|+  ++.     +
T Consensus         9 ~~~pC~n-g~C~-~~~g~~~C~C~~G~~g~---------~~~~C~-~id--~C~~~~~~~~C~~~~~C~--~~~~~~~~g   72 (186)
T 1z1y_A            9 VDTICXN-GQLV-QMSNHFXCMCNEGLVHL---------SENTCE-EXN--ECXXETLGXACGEFGQCI--ENPDPAQVN   72 (186)
T ss_dssp             TTCCCBT-EEEE-ECSSCEEEEECTTEEEE---------ETTEEE-ECC--CCSGGGTTSEEETTEEEE--ECSSTTSSC
T ss_pred             CCCCCCC-CEeE-CCCCCeEeECCCCCccC---------CCCccC-CCC--cccCCCCCCCCCCCCEee--cCCCCcCCC
Confidence            6889995 5999 99999999999999932         134897 778  9982   57899999999  887     8


Q ss_pred             CeeeeCCCCCc------ccCCCCCCCCCCCCeEe----cCCC---ce-eCCeec-----cCCCCCCCCCCCCCCC-CCCC
Q psy11059         87 LYECVCPPGYK------EIRDCTSNPCLNDGVCV----WMFD---VT-IQVYKG-----RYCELPEIGDCSSNPC-LNDG  146 (429)
Q Consensus        87 ~~~C~C~~Gy~------~~~~C~~~~C~~~g~C~----~~~~---C~-~~g~~G-----~~C~~~~i~~C~~~~C-~~~g  146 (429)
                      +|+|+|++||+      .+++|...||.++++|+    +..+   |. ++||+|     ..|+..++++|.. +| .+++
T Consensus        73 ~y~C~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~-~C~~~~~  151 (186)
T 1z1y_A           73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL-XCNTDNE  151 (186)
T ss_dssp             SEEEEECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCC-CCCTTTE
T ss_pred             CEECCCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccc-cccccCc
Confidence            99999999998      46899999999999999    5554   99 999998     8898412489984 89 8999


Q ss_pred             eEeeCCCCccccCCCCCCCCCCCCCCCceecCCcccCCccc
Q psy11059        147 VCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWEL  187 (429)
Q Consensus       147 ~C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~c~~  187 (429)
                      +|++..++|.|.                 |..||+|..++.
T Consensus       152 ~C~n~~g~y~C~-----------------C~~G~~g~~~~~  175 (186)
T 1z1y_A          152 VCXNVEGVYXCQ-----------------CMEGFTFDXEXN  175 (186)
T ss_dssp             EEEEETTEEEEE-----------------ECTTCEEETTTT
T ss_pred             ceecCCCCeeeE-----------------CCCCCccCcccc
Confidence            999999999998                 999999988764

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=144.10  Aligned_cols=126  Identities=37%  Similarity=0.892  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCCCeeCCccccC-CCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccc-------
Q psy11059        293 GCVGPDTCLNGGTCKPYLVDE-TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ-------  364 (429)
Q Consensus       293 ~C~~~~~C~~~~~C~~~~~~~-~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~-------  364 (429)
                      +|.. ++|.++++|    ++. ..++|.|.|++||+|..|+...-. ......|. ++++|..+||.++++|+       
T Consensus         2 ~C~~-~pC~~~g~C----~~~~~~g~~~C~C~~G~~G~~C~~~~~~-~~~~~~c~-~~~~C~~~~C~~~g~C~~~~~~~~   74 (143)
T 4d90_A            2 ICDP-NPCENGGIC----LPGLADGSFSCECPDGFTDPNCSSVVEV-ASDEEEPT-SAGPCTPNPCHNGGTCEISEAYRG   74 (143)
T ss_dssp             -CCS-CCCGGGCEE----EC-----CCEEECCTTCCTTTTCSCCCC-TTTTTSCC-CCCTTSSCCCCTTCEEEECCCEET
T ss_pred             cCCC-CcCCCCCEe----eCCCCCCCEEeECCCCCCCCCCccCccc-cccccccc-cCCcCCCCCCCCCCEecCCCcccc
Confidence            4665 889999999    431 226899999999999988631110 00123332 67899999999999999       


Q ss_pred             cCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCC
Q psy11059        365 NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI  425 (429)
Q Consensus       365 ~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i  425 (429)
                      +..++|+|.|++||+|..|+.++++|...+|.++++|+++.++|+|.|++||+|++|+..+
T Consensus        75 ~~~~~~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           75 DTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             TEECCEEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSCBC-
T ss_pred             CCCCCeEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCCceecC
Confidence            6778999999999999999889999999999999999999999999999999999998654

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.72  E-value=5.1e-18  Score=162.87  Aligned_cols=157  Identities=32%  Similarity=0.849  Sum_probs=74.3

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQL   87 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~   87 (429)
                      ..++|   +++|+++|+|+ +   .++|+|++||+            |..|+.+    .|.  .+|.++|+|+  .   .
T Consensus       147 ~~~~C---~~~C~~~G~C~-~---~~~C~C~~G~~------------G~~C~~~----~C~--~~C~~~G~C~--~---~  196 (324)
T 2ygq_A          147 QQAEC---PGGCRNGGFCN-E---RRICECPDGFH------------GPHCEKA----LCT--PRCMNGGLCV--T---P  196 (324)
T ss_dssp             CCCCC---SSCCCSSCEEC-T---TSCEECCTTEE------------SSSSCEE----SSS--SCCCTTCEEC--S---S
T ss_pred             cCCCC---CCCCCCCCEEC-C---CCeEECCCCCc------------CCCCCCC----CCC--CCCCCCCEEc--C---C
Confidence            34566   57999999998 4   58999999999            9999864    565  4799999999  4   5


Q ss_pred             eeeeCCCCCc----ccCCCCCCCCCCCCeEecCCCce-eCCeeccCCCCCCCCCCCCCCCCCCCeEeeCCCCccccCCCC
Q psy11059         88 YECVCPPGYK----EIRDCTSNPCLNDGVCVWMFDVT-IQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEI  162 (429)
Q Consensus        88 ~~C~C~~Gy~----~~~~C~~~~C~~~g~C~~~~~C~-~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~~~g~~C~~~~~  162 (429)
                      ++|+|++||+    +.+.|. .+|.++|+|+....|. ++||+|..|+.   ++|. ++|.++|+|+.   .+.|.    
T Consensus       197 ~~C~C~~G~~G~~C~~~~C~-~~C~~~G~C~~~~~C~C~~G~~G~~C~~---~~C~-~~C~~~g~C~~---~~~C~----  264 (324)
T 2ygq_A          197 GFCICPPGFYGVNCDKANCS-TTCFNGGTCFYPGKCICPPGLEGEQCEI---SKCP-QPCRNGGKCIG---KSKCK----  264 (324)
T ss_dssp             CCEECCTTCBTTTTCBCCCS-SCCCSSCCBSCSSCBCCCTTCCTTTTC--------------------------------
T ss_pred             CEEeCCCCccCCCcccCcCC-CCCCCCCeeCCCCeeeCCCCccCCCCCc---CcCC-CcCCCCCEECC---CCEEE----
Confidence            7899999998    445564 6788889998765588 99999998863   5675 67888888874   34565    


Q ss_pred             CCCCCCCCCCCceecCCcccCCcccCCCCCCCCCCCCCCCEEeeCCCCeeeccCCCCCCCCCCCCCCCCCCCCCCCcEec
Q psy11059        163 GDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCN  242 (429)
Q Consensus       163 ~~C~~~~C~~~~~C~~~~~G~~c~~~~~~~C~~~~C~~~~~C~~~~~~~C~C~~~g~~~C~~~~C~~~~c~~C~~~g~C~  242 (429)
                                   |.+||+|..|+.   ++|. .                                     +|.++|+| 
T Consensus       265 -------------C~~G~~G~~C~~---~~C~-~-------------------------------------~C~~~g~C-  289 (324)
T 2ygq_A          265 -------------CSKGYQGDLCSK---PVCE-P-------------------------------------GCGAHGTC-  289 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------CCCCCcCCCCcC---CCCC-C-------------------------------------CCCCCCEE-
Confidence                         888898888763   2232 1                                     35566777 


Q ss_pred             cCCCCCeeEeCCCCCcCCCCCC
Q psy11059        243 EDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       243 ~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      .+   .++|.|++||+|..|+.
T Consensus       290 ~~---~~~C~C~~G~~G~~C~~  308 (324)
T 2ygq_A          290 HE---PNKCQCQEGWHGRHCNK  308 (324)
T ss_dssp             ----------------------
T ss_pred             CC---CCEeECCCCCcCCCCCC
Confidence            22   46889999999998875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.72  E-value=2.9e-18  Score=149.41  Aligned_cols=144  Identities=31%  Similarity=0.804  Sum_probs=103.3

Q ss_pred             CCCCeeEeCCCCCcCCCCCCCcccc---CCC------CeeeeCCCCCCCCCCccCCCCCCCCCCCC-CCCeeCCccccCC
Q psy11059        245 ETGNYDCTCDALHTGDPCKHGSCVD---KRA------GYFCDCPPTYGGKNCSVELTGCVGPDTCL-NGGTCKPYLVDET  314 (429)
Q Consensus       245 ~~~~~~C~C~~g~~G~~C~~~~C~~---~~~------~~~C~C~~G~~g~~c~~~~~~C~~~~~C~-~~~~C~~~~~~~~  314 (429)
                      ....+.|.|++||+|+.|+. .|..   -.+      ..+|+|++||+|..|+..  .|..  .|. .++.|    .+  
T Consensus        13 ~~~~~~c~C~~g~~G~~C~~-~C~~~~~c~~~g~C~~~g~C~C~~G~~G~~C~~~--~C~~--~C~~~~g~C----~~--   81 (169)
T 2vj2_A           13 IEGRSAVTCDDYYYGFGCNK-FCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRA--ICRQ--GCSPKHGSC----KL--   81 (169)
T ss_dssp             --------CCTTEETTTTCE-ECCCEEETTEEEEECSSCCEEECTTEESTTSCEE--CCCT--TCCTTTEEC----SS--
T ss_pred             cccCeeeeCCCcCcCCCccc-ccCCCCCcCCCCEeCCCCeeECCCCCcCCCCCCC--CCCC--CCCCCCccc----CC--
Confidence            45678899999999999874 3432   122      335699999999999643  4653  464 45677    22  


Q ss_pred             CCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCC-cCCCCccccCCCceEEecCCCCCCCCccCCCCCCCC-
Q psy11059        315 QHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNP-CFNGATCQNKINGYTCVCAPGYSGKECSININECES-  392 (429)
Q Consensus       315 ~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~-C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~-  392 (429)
                        ++.|+|++||.|..|+.                  |...+ |.++ +|+   ++|+|+|++||+|..|+.++++|.. 
T Consensus        82 --~~~C~C~~G~~G~~C~~------------------C~~~~~C~~g-~C~---~~~~C~C~~G~~G~~C~~~~~~C~~~  137 (169)
T 2vj2_A           82 --PGDCRCQYGWQGLYCDK------------------CIPHPGCVHG-ICN---EPWQCLCETNWGGQLCDKDLNYCGTH  137 (169)
T ss_dssp             --TTCCEECTTEESSSSCE------------------ECCCTTCSSE-ECS---STTCCEECTTEETTTTCEESCHHHHT
T ss_pred             --CCeeECCCCCCCCCccc------------------CCCCCCCCCC-CcC---CCCEEeCCCCCCCCcccCCCCCCCCC
Confidence              47888888887776552                  33333 6544 776   5689999999999999878999975 


Q ss_pred             CCCCCCCEEccC-CCCeeeeCCCCCCCCCCCC
Q psy11059        393 SPCLHGATCIDE-VATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       393 ~~C~~~~~C~~~-~~~~~C~C~~g~~G~~C~~  423 (429)
                      .+|.++++|+++ .++|+|+|++||+|.+|++
T Consensus       138 ~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          138 QPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             CCCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCEEcCCCCCCcEeECCCCCcCcCcCC
Confidence            899999999996 7899999999999999974

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=160.67  Aligned_cols=152  Identities=38%  Similarity=0.929  Sum_probs=61.8

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCCCccccC-------CCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCe
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDK-------RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGT  305 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~-------~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~  305 (429)
                      ++|.++|+| ..   .+.|.|++||+|..|+...|...       ...++|.|++||+|..|+.  ..|.  .+|.++++
T Consensus       153 ~~C~~~G~C-~~---~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~--~~C~--~~C~~~G~  224 (324)
T 2ygq_A          153 GGCRNGGFC-NE---RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDK--ANCS--TTCFNGGT  224 (324)
T ss_dssp             SCCCSSCEE-CT---TSCEECCTTEESSSSCEESSSSCCCTTCEECSSCCEECCTTCBTTTTCB--CCCS--SCCCSSCC
T ss_pred             CCCCCCCEE-CC---CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcCCCEEeCCCCccCCCccc--CcCC--CCCCCCCe
Confidence            479999999 32   58999999999999885443221       1247899999999999965  3464  67999999


Q ss_pred             eCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccC
Q psy11059        306 CKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI  385 (429)
Q Consensus       306 C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~  385 (429)
                      |    ..    .+.|.|++||.|..|+                +++|. .+|.++++|+.   .++|.|++||+|+.|+ 
T Consensus       225 C----~~----~~~C~C~~G~~G~~C~----------------~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~-  275 (324)
T 2ygq_A          225 C----FY----PGKCICPPGLEGEQCE----------------ISKCP-QPCRNGGKCIG---KSKCKCSKGYQGDLCS-  275 (324)
T ss_dssp             B----SC----SSCBCCCTTCCTTTTC-----------------------------------------------------
T ss_pred             e----CC----CCeeeCCCCccCCCCC----------------cCcCC-CcCCCCCEECC---CCEEECCCCCcCCCCc-
Confidence            9    22    3577777777665443                34564 57999999974   4799999999999996 


Q ss_pred             CCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCCC
Q psy11059        386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID  426 (429)
Q Consensus       386 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i~  426 (429)
                       +++|. .+|.++++|++   .++|.|++||+|.+|+....
T Consensus       276 -~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~~  311 (324)
T 2ygq_A          276 -KPVCE-PGCGAHGTCHE---PNKCQCQEGWHGRHCNKRYE  311 (324)
T ss_dssp             -----------------------------------------
T ss_pred             -CCCCC-CCCCCCCEECC---CCEeECCCCCcCCCCCCCCc
Confidence             45665 57989999976   47999999999999987643

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.70  E-value=3.1e-17  Score=139.02  Aligned_cols=114  Identities=36%  Similarity=0.846  Sum_probs=84.3

Q ss_pred             CCCCCCCCCCCCCCEeccCCC--CceEEecCCCCcccccccccCcCCCCCCCC------------CCCCCCCCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNEDET--GNYDCTCDALHTVCCVGLANQTLGSIHCET------------PISNQICTTAPPCLN   75 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~--~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~------------~~~~~~C~~~~~C~~   75 (429)
                      |+|  .++||.++|+|+ +..  ++|+|+|++||+            |..|+.            +++  +|. .++|.+
T Consensus         1 d~C--~~~pC~~~g~C~-~~~~~g~~~C~C~~G~~------------G~~C~~~~~~~~~~~~c~~~~--~C~-~~~C~~   62 (143)
T 4d90_A            1 DIC--DPNPCENGGICL-PGLADGSFSCECPDGFT------------DPNCSSVVEVASDEEEPTSAG--PCT-PNPCHN   62 (143)
T ss_dssp             --C--CSCCCGGGCEEE-C-----CCEEECCTTCC------------TTTTCSCCCCTTTTTSCCCCC--TTS-SCCCCT
T ss_pred             CcC--CCCcCCCCCEee-CCCCCCCEEeECCCCCC------------CCCCccCccccccccccccCC--cCC-CCCCCC
Confidence            689  799999999999 765  689999999999            888874            223  454 455555


Q ss_pred             CCeEeeC-----CCCCCeeeeCCCCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCCCCCCCCCeEee
Q psy11059         76 GATCRPQ-----LTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVD  150 (429)
Q Consensus        76 ~g~C~~~-----~~~~~~~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~  150 (429)
                      +++|+..     ++.++|+|+|++                            ||+|..|+. +|++|..++|.++++|++
T Consensus        63 ~g~C~~~~~~~~~~~~~~~C~C~~----------------------------G~~G~~C~~-~i~~C~~~~C~~~~~C~~  113 (143)
T 4d90_A           63 GGTCEISEAYRGDTFIGYVCKCPR----------------------------GFNGIHCQH-NINECEVEPCKNGGICTD  113 (143)
T ss_dssp             TCEEEECCCEETTEECCEEEECCT----------------------------TEESTTSCE-ECCTTTTCCSCTTCEEEE
T ss_pred             CCEecCCCccccCCCCCeEeECcC----------------------------CCcCCCccc-CCCcCCCCCCCCCCEeEC
Confidence            5555521     122345555554                            477888987 899999999999999999


Q ss_pred             CCCCccccCCCCCCCCCCCCCCCceecCCcccCCccc
Q psy11059        151 VYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWEL  187 (429)
Q Consensus       151 ~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~c~~  187 (429)
                      ..++|.|.                 |..+|+|+.++.
T Consensus       114 ~~g~~~C~-----------------C~~G~~G~~c~~  133 (143)
T 4d90_A          114 LVANYSCE-----------------CPGEFMGRNCQY  133 (143)
T ss_dssp             ETTEEEEE-----------------CCTTCBSTTSCB
T ss_pred             CCCCeEeE-----------------CCCCCccCCcee
Confidence            99999998                 999999998875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.60  E-value=4e-16  Score=135.87  Aligned_cols=149  Identities=25%  Similarity=0.648  Sum_probs=103.4

Q ss_pred             CCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc----ccCCCC
Q psy11059         28 DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK----EIRDCT  103 (429)
Q Consensus        28 ~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~----~~~~C~  103 (429)
                      .....++|+|++||+            |..|+.     +|.....|..+++|+  .   .++|+|++||+    ++++|.
T Consensus        12 ~~~~~~~c~C~~g~~------------G~~C~~-----~C~~~~~c~~~g~C~--~---~g~C~C~~G~~G~~C~~~~C~   69 (169)
T 2vj2_A           12 SIEGRSAVTCDDYYY------------GFGCNK-----FCRPRDDFFGHYACD--Q---NGNKTCMEGWMGPECNRAICR   69 (169)
T ss_dssp             ---------CCTTEE------------TTTTCE-----ECCCEEETTEEEEEC--S---SCCEEECTTEESTTSCEECCC
T ss_pred             ccccCeeeeCCCcCc------------CCCccc-----ccCCCCCcCCCCEeC--C---CCeeECCCCCcCCCCCCCCCC
Confidence            345678999999999            888873     466344688889998  3   56799999999    344555


Q ss_pred             CCCCC-CCCeEecCCCce-eCCeeccCCCCCCCCCCCCCC-CCCCCeEeeCCCCccccCCCCCCCCCCCCCCCceecCCc
Q psy11059        104 SNPCL-NDGVCVWMFDVT-IQVYKGRYCELPEIGDCSSNP-CLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVY  180 (429)
Q Consensus       104 ~~~C~-~~g~C~~~~~C~-~~g~~G~~C~~~~i~~C~~~~-C~~~g~C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~  180 (429)
                      . +|. .+|.|++...|. ++||+|..|+.     |...+ |.++ +|+   +.+.|.                 |.++|
T Consensus        70 ~-~C~~~~g~C~~~~~C~C~~G~~G~~C~~-----C~~~~~C~~g-~C~---~~~~C~-----------------C~~G~  122 (169)
T 2vj2_A           70 Q-GCSPKHGSCKLPGDCRCQYGWQGLYCDK-----CIPHPGCVHG-ICN---EPWQCL-----------------CETNW  122 (169)
T ss_dssp             T-TCCTTTEECSSTTCCEECTTEESSSSCE-----ECCCTTCSSE-ECS---STTCCE-----------------ECTTE
T ss_pred             C-CCCCCCcccCCCCeeECCCCCCCCCccc-----CCCCCCCCCC-CcC---CCCEEe-----------------CCCCC
Confidence            3 465 678898755599 99999999973     66666 7754 887   356676                 99999


Q ss_pred             ccCCcccCCCCCCCC-CCCCCCCEEeeCCCCeeeccCCCCCCCCCCCCCCCCCCCCCCCcEeccCCCCCeeEeCCCCCcC
Q psy11059        181 KGRYWELPEIRDCTS-NPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTG  259 (429)
Q Consensus       181 ~G~~c~~~~~~~C~~-~~C~~~~~C~~~~~~~C~C~~~g~~~C~~~~C~~~~c~~C~~~g~C~~~~~~~~~C~C~~g~~G  259 (429)
                      +|..|+. ++++|.. .+|.                                     ++|+|+....++|+|+|++||+|
T Consensus       123 ~G~~C~~-~~~~C~~~~~C~-------------------------------------~~g~C~~~~~~~~~C~C~~G~~G  164 (169)
T 2vj2_A          123 GGQLCDK-DLNYCGTHQPCL-------------------------------------NGGTCSNTGPDKYQCSCPEGYSG  164 (169)
T ss_dssp             ETTTTCE-ESCHHHHTCCCC-------------------------------------TTCEEEECSTTCEEEECCTTCCS
T ss_pred             CCCcccC-CCCCCCCCCCCC-------------------------------------CCCEEcCCCCCCcEeECCCCCcC
Confidence            9999986 6777753 4444                                     44555222356788999999999


Q ss_pred             CCCC
Q psy11059        260 DPCK  263 (429)
Q Consensus       260 ~~C~  263 (429)
                      ..|+
T Consensus       165 ~~Ce  168 (169)
T 2vj2_A          165 PNCE  168 (169)
T ss_dssp             TTSC
T ss_pred             cCcC
Confidence            9886

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.56  E-value=2.6e-15  Score=116.49  Aligned_cols=82  Identities=24%  Similarity=0.675  Sum_probs=67.6

Q ss_pred             cCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCcc-CCCCCCCCCCCCCCCEEccCC--CCeeeeC
Q psy11059        336 CRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS-ININECESSPCLHGATCIDEV--ATFSCVC  412 (429)
Q Consensus       336 C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~-~~~~~C~~~~C~~~~~C~~~~--~~~~C~C  412 (429)
                      |.+||.|..|  ++++|...||.      +..++|+|.|++||+  .|+ +++++|.++||.++|+|++..  ++|+|.|
T Consensus         6 C~~g~~g~~c--~~~~c~~~pC~------n~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C   75 (91)
T 1tpg_A            6 CRDEKTQMIY--QQHQSWLRPVL------RSNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQC   75 (91)
T ss_dssp             CBCSSSCCBC--CSSCEEEEECS------SSSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEEC
T ss_pred             CCCCCcCCeE--CCCcccCCccc------cCCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeEC
Confidence            3334444455  36778766654      457889999999998  897 588999999999999999887  8999999


Q ss_pred             CCCCCCCCCCCCCCC
Q psy11059        413 PKGLTGRLCETNIDD  427 (429)
Q Consensus       413 ~~g~~G~~C~~~i~~  427 (429)
                      ++||+|.+|+++|+|
T Consensus        76 ~~G~~G~~Ce~~ide   90 (91)
T 1tpg_A           76 PEGFAGKSCEIDTRA   90 (91)
T ss_dssp             CTTCBSSSCCBCSSC
T ss_pred             CCCCcCCcCCcCCCC
Confidence            999999999999986

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.56  E-value=7.1e-15  Score=153.16  Aligned_cols=115  Identities=26%  Similarity=0.608  Sum_probs=77.0

Q ss_pred             CCCCCCCCCCCCCEeccCCCCceE---EecCCCCcccccccccCcCCCCCCCCCC--------CCCCCCC---CCCCCCC
Q psy11059         11 PCDAQRNPCQNGGKCNEDETGNYD---CTCDALHTVCCVGLANQTLGSIHCETPI--------SNQICTT---APPCLNG   76 (429)
Q Consensus        11 ~C~~~~~~C~~~g~C~~~~~~~~~---C~C~~g~~g~~~~~~~~~~~G~~C~~~~--------~~~~C~~---~~~C~~~   76 (429)
                      +|  ..+||.++++|. +..|.|.   |.|++||+            |..|+.++        +  +|..   ..+|.++
T Consensus       436 ~C--~~~pc~n~~~C~-~g~G~~~~G~C~C~~Gy~------------G~~Ce~~~~~~~~~~~~--~C~~~~~~~~Cs~~  498 (690)
T 3fcs_B          436 AC--QAQAEPNSHRCN-NGNGTFECGVCRCGPGWL------------GSQCECSEEDYRPSQQD--ECSPREGQPVCSQR  498 (690)
T ss_dssp             GG--GTTCCTTCTTTT-TTSEEEETTEEEECTTCC------------SSSSCCSCC------CC--CCSSSSSSCGGGGS
T ss_pred             CC--cCCCCCCCCccc-CCCCeEeCCceEeCCCcc------------CCceeeccCccCCccCC--cCCCCCCCCCCCCC
Confidence            67  788999999998 8889998   99999999            99998765        4  5762   1358888


Q ss_pred             CeEeeCCCCCCeeeeCC----CCCc------ccCCCCC---CCCCCCCeEecCCCce-eCCeeccCCC--CCCCCCCCC-
Q psy11059         77 ATCRPQLTEQLYECVCP----PGYK------EIRDCTS---NPCLNDGVCVWMFDVT-IQVYKGRYCE--LPEIGDCSS-  139 (429)
Q Consensus        77 g~C~~~~~~~~~~C~C~----~Gy~------~~~~C~~---~~C~~~g~C~~~~~C~-~~g~~G~~C~--~~~i~~C~~-  139 (429)
                      |+|+  .    ++|.|+    +||+      ++++|..   .+|.++|+|+. ..|. .+||+|..|+  . ++++|.. 
T Consensus       499 G~C~--~----g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~-g~C~C~~Gy~G~~CeC~~-~~~~C~~~  570 (690)
T 3fcs_B          499 GECL--C----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-GDCLCDSDWTGYYCNCTT-RTDTCMSS  570 (690)
T ss_dssp             EEEC--S----SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET-TEEEECTTEESSSSCEEC-CCTTTBCT
T ss_pred             CEEE--C----CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC-CeeECcCCCcCCCCccCC-CCCcccCC
Confidence            8887  3    468887    6665      2344553   34555566654 1155 6666666665  3 4555553 


Q ss_pred             --CCCCCCCeEee
Q psy11059        140 --NPCLNDGVCVD  150 (429)
Q Consensus       140 --~~C~~~g~C~~  150 (429)
                        .+|.++|+|++
T Consensus       571 ~g~~C~~~G~C~~  583 (690)
T 3fcs_B          571 NGLLCSGRGKCEC  583 (690)
T ss_dssp             TSSBTSSSCEEET
T ss_pred             CCCCCCCCCEEeC
Confidence              34555556643

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.55  E-value=4.9e-15  Score=152.18  Aligned_cols=122  Identities=33%  Similarity=0.889  Sum_probs=101.4

Q ss_pred             CCCCCCCCCCCCCCCeeCCccccCCCCCeee-eCCCCccCCCCcccccCCCccCCCCccCCCcCCCCC--cCCCC---cc
Q psy11059        290 ELTGCVGPDTCLNGGTCKPYLVDETQHRFNC-TCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNP--CFNGA---TC  363 (429)
Q Consensus       290 ~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C-~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~--C~~~~---~C  363 (429)
                      ++++|.. ++|.++++|    ++...++|+| .|++||+|.            |..|+ +|++|...|  |.+++   +|
T Consensus         2 DIDeC~~-nPC~~gg~C----~n~~~Gsy~C~~C~~GytGd------------g~~Ce-DiDEC~~~p~~C~~gg~~~~C   63 (634)
T 1yo8_A            2 DPDGCLS-NPCFPGAQC----SSFPDGSWSCGFCPVGFLGN------------GTHCE-DLDECALVPDICFSTSKVPRC   63 (634)
T ss_dssp             --CGGGG-CCSCTTCCE----EECTTSCEEECCCCTTBCSC------------SSSCC-BCCTTTTSCCCSCCCSSSCCE
T ss_pred             cccccCC-CCCCCCCEE----ecCCCCCeECCcCCCccCCC------------CCCcc-ccccccCCCCcccCCccccce
Confidence            4567776 899999999    5523345999 999999874            46675 899999888  99998   99


Q ss_pred             ccCCCceEEe-cCCCCCCCCcc--------------CCCCCCCC--CCCCCCCEEccCC----CCeeeeCCCCCCC--CC
Q psy11059        364 QNKINGYTCV-CAPGYSGKECS--------------ININECES--SPCLHGATCIDEV----ATFSCVCPKGLTG--RL  420 (429)
Q Consensus       364 ~~~~g~~~C~-C~~G~~G~~C~--------------~~~~~C~~--~~C~~~~~C~~~~----~~~~C~C~~g~~G--~~  420 (429)
                      +++.++|+|. |++||+|..|+              +++++|..  ++|.++++|+++.    ++|+|.|++||+|  ..
T Consensus        64 vNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~  143 (634)
T 1yo8_A           64 VNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLI  143 (634)
T ss_dssp             EECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSS
T ss_pred             eeccCceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcc
Confidence            9999999998 99999988753              47899985  5899999999998    8999999999998  79


Q ss_pred             CCC--CCCCCC
Q psy11059        421 CET--NIDDCE  429 (429)
Q Consensus       421 C~~--~i~~C~  429 (429)
                      |++  +|+||.
T Consensus       144 Ce~d~DiDeC~  154 (634)
T 1yo8_A          144 CGEDSDLDGWP  154 (634)
T ss_dssp             EEECTTSSSSC
T ss_pred             cccccCccccc
Confidence            974  788873

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.53  E-value=5.6e-15  Score=125.04  Aligned_cols=117  Identities=30%  Similarity=0.717  Sum_probs=93.0

Q ss_pred             CCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCC---CcCCCCccccCCCceEEec
Q psy11059        298 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSN---PCFNGATCQNKINGYTCVC  374 (429)
Q Consensus       298 ~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~---~C~~~~~C~~~~g~~~C~C  374 (429)
                      .+|.++++|    ++    .|.|.|++||+|.. +    .....+..|+ +|++|...   +|.++++|+++.++|+|.|
T Consensus         7 ~~C~~~~~C----~~----~~~C~C~~G~~g~~-~----~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C   72 (143)
T 2bou_A            7 RWCPQDSSC----VN----ATACRCNPGFSSFS-E----IITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVC   72 (143)
T ss_dssp             TTCCTTEEE----SS----SSCEEECTTEECSS-S----SBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEE
T ss_pred             CcCCCCCEE----cC----CCEEeCCCCCcCcc-c----cccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeEC
Confidence            678899999    33    38999999999852 0    0012356775 89999875   8999999999999999999


Q ss_pred             CCCCCCC------------CccCCCCCCC--CCCCCCCCEEccCCCCeeeeCCCCCCCCCCCC---CCCCCC
Q psy11059        375 APGYSGK------------ECSININECE--SSPCLHGATCIDEVATFSCVCPKGLTGRLCET---NIDDCE  429 (429)
Q Consensus       375 ~~G~~G~------------~C~~~~~~C~--~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~---~i~~C~  429 (429)
                      ++||+|.            .|+ +|++|.  .++|.++++|+++.++|+|.|++||+|.....   ++++|+
T Consensus        73 ~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C~  143 (143)
T 2bou_A           73 SPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE  143 (143)
T ss_dssp             CTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCBC
T ss_pred             CCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCccC
Confidence            9999876            564 889997  47899999999999999999999999875432   455553

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.53  E-value=1.1e-14  Score=149.57  Aligned_cols=141  Identities=23%  Similarity=0.570  Sum_probs=108.0

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCC-ceEE-ecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCC--CCCCC---eEe
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETG-NYDC-TCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPP--CLNGA---TCR   80 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~-~~~C-~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~--C~~~g---~C~   80 (429)
                      ++|||  ..+||+++++|+ +..+ +|+| .|++||+|+          |..|+ +++  +|. ..+  |.+++   +|+
T Consensus         2 DIDeC--~~nPC~~gg~C~-n~~~Gsy~C~~C~~GytGd----------g~~Ce-DiD--EC~-~~p~~C~~gg~~~~Cv   64 (634)
T 1yo8_A            2 DPDGC--LSNPCFPGAQCS-SFPDGSWSCGFCPVGFLGN----------GTHCE-DLD--ECA-LVPDICFSTSKVPRCV   64 (634)
T ss_dssp             --CGG--GGCCSCTTCCEE-ECTTSCEEECCCCTTBCSC----------SSSCC-BCC--TTT-TSCCCSCCCSSSCCEE
T ss_pred             ccccc--CCCCCCCCCEEe-cCCCCCeECCcCCCccCCC----------CCCcc-ccc--ccc-CCCCcccCCcccccee
Confidence            58999  789999999999 7774 5999 999999966          69997 888  998 566  99999   999


Q ss_pred             eCCCCCCeeee-CCCCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCC--CCCCCCCeEeeCC----C
Q psy11059         81 PQLTEQLYECV-CPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSS--NPCLNDGVCVDVY----K  153 (429)
Q Consensus        81 ~~~~~~~~~C~-C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~--~~C~~~g~C~~~~----~  153 (429)
                        ++.++|+|. |++||+... |..     .++       ......+..|+  +|++|..  ++|.++++|++..    +
T Consensus        65 --Nt~gsY~C~~C~~Gy~G~~-c~g-----~g~-------~~~~~dg~~C~--dideC~~~~~pC~~~~~Cvnt~~~~~G  127 (634)
T 1yo8_A           65 --NTQPGFHCLPCPPRYRGNQ-PVG-----VGL-------EAAKTEKQVCE--PENPCKDKTHNCHKHAECIYLGHFSDP  127 (634)
T ss_dssp             --ECSSSEEECCCCTTEEECC-CEE-----SSS-------HHHHSCCCCEE--ECCTTTTTCCCCCTTEEEEECCTTCSS
T ss_pred             --eccCceecccCCCCcccCc-ccc-----ccc-------cccccCCCccc--ccccccCCCcccccCcccccccccccc
Confidence              999999999 999998321 100     000       00001256676  7999985  5899999999998    8


Q ss_pred             CccccCCCCCCCCCCCCCCCceecCCccc--CCccc-CCCCCCCC--CCCC
Q psy11059        154 GRYCELPEIGDCSSNPCLNDGVCVDVYKG--RYWEL-PEIRDCTS--NPCL  199 (429)
Q Consensus       154 g~~C~~~~~~~C~~~~C~~~~~C~~~~~G--~~c~~-~~~~~C~~--~~C~  199 (429)
                      +|.|.                 |..||.|  ..|+. .+|++|..  .+|.
T Consensus       128 sY~C~-----------------C~~Gy~GdG~~Ce~d~DiDeC~~~~~~C~  161 (634)
T 1yo8_A          128 MYKCE-----------------CQTGYAGDGLICGEDSDLDGWPNLNLVCA  161 (634)
T ss_dssp             SEEEE-----------------ECTTEEESSSSEEECTTSSSSCSSCCTTT
T ss_pred             ceeee-----------------ccCCccccCcccccccCcccccCCCCccc
Confidence            99998                 9999998  78873 27888864  3454

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.51  E-value=8.2e-15  Score=150.35  Aligned_cols=117  Identities=24%  Similarity=0.477  Sum_probs=49.2

Q ss_pred             CeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCcc
Q psy11059        248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYH  327 (429)
Q Consensus       248 ~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~  327 (429)
                      .+.|.|.++|.|..|+             .|.+||+|..++ ....|.. .+|.+.++|.....= ...++.|.|++||.
T Consensus       406 ~~~C~C~~g~~G~~C~-------------~C~~Gy~G~~c~-~~~~C~~-C~C~~~gtc~~~~~C-d~~tg~C~C~~g~~  469 (525)
T 4aqs_A          406 AGQCRCKLHVEGERCD-------------VCKEGFYDLSAE-DPYGCKS-CACNPLGTIPGGNPC-DSETGYCYCKRLVT  469 (525)
T ss_dssp             SSCCCBCTTEETTTTC-------------EECTTEECCCTT-STTSSEE-CCCCTTTBCCSSCCB-CTTTCCBCBCTTCC
T ss_pred             CCccCCCCCCCCCccc-------------CCCCCCcCCCCC-CCCCCcc-CCCCCCceecCCCcc-cCCCCEEECCCCCc
Confidence            4568899999999885             588999988775 3445665 667666665321000 23467899999999


Q ss_pred             CCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccC--CCceEEecCCCCCCCCcc
Q psy11059        328 GKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK--INGYTCVCAPGYSGKECS  384 (429)
Q Consensus       328 G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~--~g~~~C~C~~G~~G~~C~  384 (429)
                      |..|+  +|.+||+|...  +++.|...+|.+++.+...  ...++|.|++||+|+.|+
T Consensus       470 G~~Ce--~C~~G~~g~~~--~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ce  524 (525)
T 4aqs_A          470 GQRCD--QCLPQHWGLSN--DLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN  524 (525)
T ss_dssp             STTTC--C---------------------------------------------------
T ss_pred             CCCcc--cCCCCccCCCC--CCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCC
Confidence            99888  57888887653  4566776667666554332  122356666666666663

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.51  E-value=3.5e-14  Score=147.96  Aligned_cols=154  Identities=28%  Similarity=0.714  Sum_probs=114.3

Q ss_pred             CCCCCcEeccCCCCCee---EeCCCCCcCCCCCCCc----------cccCC-----------CCeeeeCC----CCCCCC
Q psy11059        234 PCQNGGKCNEDETGNYD---CTCDALHTGDPCKHGS----------CVDKR-----------AGYFCDCP----PTYGGK  285 (429)
Q Consensus       234 ~C~~~g~C~~~~~~~~~---C~C~~g~~G~~C~~~~----------C~~~~-----------~~~~C~C~----~G~~g~  285 (429)
                      +|.++++| .+..+.+.   |.|++||+|..|+...          |....           ..++|.|+    +||+|.
T Consensus       441 pc~n~~~C-~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~g~C~C~~~~~~Gy~G~  519 (690)
T 3fcs_B          441 AEPNSHRC-NNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGK  519 (690)
T ss_dssp             CCTTCTTT-TTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECSSSEEECCCSSCCCBST
T ss_pred             CCCCCCcc-cCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEECCeeEeecCCCCCeeCC
Confidence            46666777 44455566   9999999999997543          54321           12589999    999999


Q ss_pred             CCccCCCCCCCC--CCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCC---CCcCCC
Q psy11059        286 NCSVELTGCVGP--DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLS---NPCFNG  360 (429)
Q Consensus       286 ~c~~~~~~C~~~--~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~---~~C~~~  360 (429)
                      .|+.+...|...  .+|.++|+|    ..     +.|.|++||.|..|+            |..++++|..   .+|.++
T Consensus       520 ~Ce~~~~~C~~~~~~~C~~~G~C----~~-----g~C~C~~Gy~G~~Ce------------C~~~~~~C~~~~g~~C~~~  578 (690)
T 3fcs_B          520 YCECDDFSCVRYKGEMCSGHGQC----SC-----GDCLCDSDWTGYYCN------------CTTRTDTCMSSNGLLCSGR  578 (690)
T ss_dssp             TSCBCSSCCCBSSSSBGGGSEEE----ET-----TEEEECTTEESSSSC------------EECCCTTTBCTTSSBTSSS
T ss_pred             CcCcccCcCcCCCCCCCCCCCEe----cC-----CeeECcCCCcCCCCc------------cCCCCCcccCCCCCCCCCC
Confidence            998777788742  368888888    22     678888888777554            1134567765   579999


Q ss_pred             CccccCCCceEEec-CCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        361 ATCQNKINGYTCVC-APGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       361 ~~C~~~~g~~~C~C-~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      ++|+..    +|.| ++||+|..|+. ...| +.+|.++++|++        |..+|+|..|+.
T Consensus       579 G~C~~g----~C~C~~~Gy~G~~Ce~-C~~C-~~~C~~~g~Cv~--------C~~g~tG~~C~~  628 (690)
T 3fcs_B          579 GKCECG----SCVCIQPGSYGDTCEK-CPTC-PDACTFKKECVE--------CKKFDRGALHDE  628 (690)
T ss_dssp             CEEETT----EEECCSTTCBSTTSCB-CTTS-CCTTTSCCGGGT--------TTTTCCSSSSSS
T ss_pred             CEEeCC----EEECCCCCccCCCcCc-CCCC-CCCCCCCCCccc--------CCCCCccCCCCc
Confidence            999763    9999 99999999974 2445 578999998875        999999997764

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.49  E-value=1.4e-15  Score=131.62  Aligned_cols=135  Identities=19%  Similarity=0.451  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCC--CCCCeEeeCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPC--LNGATCRPQLT   84 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C--~~~g~C~~~~~   84 (429)
                      +||||+ .++||. +|+|+ ++.++|+|+|++||++.        .+|..|+ +++..+|. ...+|  .++++|+  +.
T Consensus         2 dideC~-~~~~C~-~~~C~-n~~gsy~C~C~~Gy~~~--------~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~--~~   67 (162)
T 1uzk_A            2 DVNECL-DPTTCI-SGNCV-NTPGSYICDCPPDFELN--------PTRVGCV-DTRSGNCYLDIRPRGDNGDTACS--NE   67 (162)
T ss_dssp             CCCGGG-STTSSB-TSEEE-EETTEEEEECCTTCEEC--------TTSSBEE-CCCCEEEEEEC----------CE--EE
T ss_pred             ccccCC-CCCCCC-CCEeE-CCCCCEEEeCCCCCeEC--------CCCCccc-CCCCCcccCCCcccCCCCCCccc--CC
Confidence            689994 368997 69999 99999999999999942        3488997 67611276 23344  3578999  77


Q ss_pred             CC----CeeeeCCCCCcccCCCCCCCCCCCCeEecCCC----ce-eC--Ceecc----CCCCCCCCCCCC--CCCCCCCe
Q psy11059         85 EQ----LYECVCPPGYKEIRDCTSNPCLNDGVCVWMFD----VT-IQ--VYKGR----YCELPEIGDCSS--NPCLNDGV  147 (429)
Q Consensus        85 ~~----~~~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~----C~-~~--g~~G~----~C~~~~i~~C~~--~~C~~~g~  147 (429)
                      .+    +|+|.|++||...++|.        .|.....    |. ++  ||+|.    .|+  +||||..  ++|.+ ++
T Consensus        68 ~~~~~~~~~C~C~~G~~~~~~C~--------~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~--dideC~~~~~~C~~-g~  136 (162)
T 1uzk_A           68 IGVGVSKASCCCSLGKAWGTPCE--------MCPAVNTSEYKILCPGGEGFRPNPITVILE--DIDECQELPGLCQG-GK  136 (162)
T ss_dssp             EEEEECHHHHHTTTCCEETTTTE--------ECCCTTSHHHHHHCTTCTTEEECTTTCCEE--ECCHHHHCGGGGBT-SE
T ss_pred             cCCcccCceeeCCCCCCcCCCcc--------cCCCCCCCCceeECCCCCCcccCCCCCccC--ccccccCCCCCcCC-CE
Confidence            66    89999999999656665        2332222    55 44  99985    455  8999985  45986 69


Q ss_pred             EeeCCCCccccCCCCCCCCCCCCCCCceecCCcccCC
Q psy11059        148 CVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRY  184 (429)
Q Consensus       148 C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~  184 (429)
                      |+++.++|.|.                 |..||+|..
T Consensus       137 C~n~~gsy~C~-----------------C~~Gy~g~~  156 (162)
T 1uzk_A          137 CINTFGSFQCR-----------------CPTGYYLNE  156 (162)
T ss_dssp             EEECSSCEEEE-----------------CCTTCCBCT
T ss_pred             eEcCCCCEEee-----------------CCCCccCCC
Confidence            99999999998                 999998853

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.46  E-value=3.7e-14  Score=119.94  Aligned_cols=123  Identities=25%  Similarity=0.554  Sum_probs=93.5

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCC--CCCCCCCeEeeCCCCCCeeeeCC
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTA--PPCLNGATCRPQLTEQLYECVCP   93 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~--~~C~~~g~C~~~~~~~~~~C~C~   93 (429)
                      +++|.++|+|+ +   .|+|+|++||+|..   -+....+..|+ +++  +|...  .+|.++++|+  ++.++|+|+|+
T Consensus         6 ~~~C~~~~~C~-~---~~~C~C~~G~~g~~---~~~~~~~~~C~-did--eC~~~~~~~C~~~~~C~--n~~g~y~C~C~   73 (143)
T 2bou_A            6 ARWCPQDSSCV-N---ATACRCNPGFSSFS---EIITTPMETCD-DIN--ECATLSKVSCGKFSDCW--NTEGSYDCVCS   73 (143)
T ss_dssp             CTTCCTTEEES-S---SSCEEECTTEECSS---SSBCSTTCCCE-ECC--GGGC----CCCTTEEEE--ECSSCEEEEEC
T ss_pred             cCcCCCCCEEc-C---CCEEeCCCCCcCcc---ccccCCCCcCC-ccc--cccCCCCCCCCCCCEEE--cCCCCeEeECC
Confidence            68999999999 6   39999999999541   11113357896 788  99832  3899999999  99999999999


Q ss_pred             CCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCC--CCCCCCCeEeeCCCCccccCCCCCCCCCCCCC
Q psy11059         94 PGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSS--NPCLNDGVCVDVYKGRYCELPEIGDCSSNPCL  171 (429)
Q Consensus        94 ~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~--~~C~~~g~C~~~~~g~~C~~~~~~~C~~~~C~  171 (429)
                      +||+... +... +              ....+..|+  +||+|..  ++|.++++|+++.++|.|.             
T Consensus        74 ~Gy~g~~-~~~~-~--------------~~~~~~~C~--dideC~~~~~~C~~~~~C~n~~g~y~C~-------------  122 (143)
T 2bou_A           74 PGYEPVS-GAKT-F--------------KNESENTCQ--DVDECSSGQHQCDSSTVCFNTVGSYSCR-------------  122 (143)
T ss_dssp             TTEEETT-CCSC-B--------------SSGGGCCEE--ECCHHHHTCCCCCTTSEEEECSSCEEEE-------------
T ss_pred             CCcccCc-Cccc-c--------------ccCCCCCcC--CccCccCcCCCCCCCCEEECCCCCEEee-------------
Confidence            9998321 1100 0              012356776  8999984  7899999999999999998             


Q ss_pred             CCceecCCcccCCc
Q psy11059        172 NDGVCVDVYKGRYW  185 (429)
Q Consensus       172 ~~~~C~~~~~G~~c  185 (429)
                          |.++|+|...
T Consensus       123 ----C~~Gy~g~~~  132 (143)
T 2bou_A          123 ----CRPGWKPRHG  132 (143)
T ss_dssp             ----CCSSSCBCTT
T ss_pred             ----CCCCcccCCC
Confidence                9999998654

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.44  E-value=2.1e-13  Score=135.36  Aligned_cols=118  Identities=31%  Similarity=0.916  Sum_probs=96.6

Q ss_pred             CCCCCcEeccCCCCCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccC
Q psy11059        234 PCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE  313 (429)
Q Consensus       234 ~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~  313 (429)
                      +|.++|+| ..  ..+.|.|++||+|..|+.            .|.++|.|..|..   .|.....|.++++|       
T Consensus       204 ~C~~~G~C-~~--~~g~C~C~~G~~G~~Ce~------------~C~~g~~g~~C~~---~C~~~~~C~~~g~C-------  258 (423)
T 2gy5_A          204 ACMNNGVC-HE--DTGECICPPGFMGRTCEK------------ACELHTFGRTCKE---RCSGQEGCKSYVFC-------  258 (423)
T ss_dssp             CCCTTCEE-CT--TTCCEECCTTEESTTSCE------------ECCTTEESTTSCE---ECCSTTTTTTCCEE-------
T ss_pred             CCCCCCEE-EC--CCCcEeCCCCccCCCccc------------ccCCCCCCCCcCc---cCCCCCCCCCCCEE-------
Confidence            68889999 33  568999999999999985            4788898888752   46544678888888       


Q ss_pred             CCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCC
Q psy11059        314 TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN  386 (429)
Q Consensus       314 ~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~  386 (429)
                      ..++|.|.|++||.|..|+. .|.+||+|..|+.   .|   +|.++++|.+..   .|.|++||+|..|+..
T Consensus       259 ~~~~~~C~C~~G~~G~~C~~-~C~~G~~G~~C~~---~C---~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~  321 (423)
T 2gy5_A          259 LPDPYGCSCATGWKGLQCNE-ACHPGFYGPDCKL---RC---SCNNGEMCDRFQ---GCLCSPGWQGLQCERE  321 (423)
T ss_dssp             ETTTTEEECCBTCBSGGGCB-CCCTTBCSBTTCC---BC---CCTTCCEEETTT---EEECCTTCBSTTSCBC
T ss_pred             CCCCCeEEeCCCcccccccC-ccCCCCcCCcccc---cc---cCCCCCEecCCC---ceECCCCCcCCCCccC
Confidence            45689999999999998874 4899999999963   34   688999998764   4999999999999754

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.42  E-value=1.4e-13  Score=141.08  Aligned_cols=218  Identities=21%  Similarity=0.364  Sum_probs=104.3

Q ss_pred             ecCCcccCCcccCCCCCCCCCCCCCCCEEeeCCCCe-eeccCCCCCCCCCCCCCCCCCCCCCCCcEeccCCCCCeeEeCC
Q psy11059        176 CVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKG-RYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCD  254 (429)
Q Consensus       176 C~~~~~G~~c~~~~~~~C~~~~C~~~~~C~~~~~~~-C~C~~~g~~~C~~~~C~~~~c~~C~~~g~C~~~~~~~~~C~C~  254 (429)
                      |..+|+|..|+. .++.+...|+.. +++.+....+ |.| ......|...... .....+.+++.|         +.|.
T Consensus       283 C~~G~~G~~Ce~-C~~g~~~~p~~~-~~c~~~~~~~~C~C-~~~~~~C~~d~~~-c~~~~~~~gg~C---------~~C~  349 (525)
T 4aqs_A          283 CRHNTKGLNCEL-CMDFYHDLPWRP-AEGRNSNACKKCNC-NEHSSSCHFDMAV-FLATGNVSGGVC---------DNCQ  349 (525)
T ss_dssp             CCTTEESSSSCE-ECTTCCSSCCCC-CBTTBCCCCCCCCC-TTSCSEEEECHHH-HHHTTSSCCEEE---------ESCC
T ss_pred             CcCCCcCCCCcC-CCCccCCCccCC-CcccCCCccccccc-CCCCCCCCCCccc-ccccCccCCCcc---------cCCC
Confidence            899999999998 888888888753 5666555555 666 4433333211000 000123334444         5789


Q ss_pred             CCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCccCC-----C--CCCCCCCCCCCCeeCCcc-ccCCCCCeeeeCCCCc
Q psy11059        255 ALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVEL-----T--GCVGPDTCLNGGTCKPYL-VDETQHRFNCTCPSGY  326 (429)
Q Consensus       255 ~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~~~-----~--~C~~~~~C~~~~~C~~~~-~~~~~~~~~C~C~~G~  326 (429)
                      .+|.|..|+.             |.++|.+..+....     .  .|.. .....+..|.... .......+.|.|.++|
T Consensus       350 ~g~~G~~Ce~-------------C~~g~~~~~~~~~~~~~~~~~C~C~~-~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~  415 (525)
T 4aqs_A          350 HNTMGRNCEQ-------------CKPFYFQHPERDIRDPNLCEPCTCDP-AGSENGGICDGYTDFSVGLIAGQCRCKLHV  415 (525)
T ss_dssp             TTEESTTSCE-------------ECTTEEECSSSCTTCTTCEEECCCCT-TTBSGGGCCCCSCBGGGTBCSSCCCBCTTE
T ss_pred             CCCCCCCccc-------------ccCcccccCCCCCCCCCCCcCCCCCC-CCCCCCccccCCCCCCcCCCCCccCCCCCC
Confidence            9999998863             23333222111000     0  0000 0000111111000 0012345679999999


Q ss_pred             cCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccC----CCceEEecCCCCCCCCcc----------CCCCCCCC
Q psy11059        327 HGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK----INGYTCVCAPGYSGKECS----------ININECES  392 (429)
Q Consensus       327 ~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~----~g~~~C~C~~G~~G~~C~----------~~~~~C~~  392 (429)
                      .|..|+  .|.+||+|..+. ....|...+|...++|.+.    ...+.|.|++||+|..|+          .+++.|.+
T Consensus       416 ~G~~C~--~C~~Gy~G~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~  492 (525)
T 4aqs_A          416 EGERCD--VCKEGFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP  492 (525)
T ss_dssp             ETTTTC--EECTTEECCCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-----------------
T ss_pred             CCCccc--CCCCCCcCCCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcC
Confidence            999887  689999999886 5667776677766666543    234689999999999996          24567888


Q ss_pred             CCCCCCCEEccC--CCCeeeeCCCCCCCCCCCC
Q psy11059        393 SPCLHGATCIDE--VATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       393 ~~C~~~~~C~~~--~~~~~C~C~~g~~G~~C~~  423 (429)
                      .+|.+++.+...  ..+++|.|++||+|.+|++
T Consensus       493 C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             ---------------------------------
T ss_pred             CCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            888888776543  3456899999999999984

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.42  E-value=2e-13  Score=135.43  Aligned_cols=130  Identities=30%  Similarity=0.782  Sum_probs=102.0

Q ss_pred             eeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCC
Q psy11059        274 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL  353 (429)
Q Consensus       274 ~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~  353 (429)
                      +.|.|.+||+|..|+.   .|   .+|.++++|       ...++.|.|++||.|..|+. .|.++|+|..|.   ++|.
T Consensus       185 ~~c~C~~g~~G~~C~~---~C---~~C~~~G~C-------~~~~g~C~C~~G~~G~~Ce~-~C~~g~~g~~C~---~~C~  247 (423)
T 2gy5_A          185 IVRRCEAQKWGPECNH---LC---TACMNNGVC-------HEDTGECICPPGFMGRTCEK-ACELHTFGRTCK---ERCS  247 (423)
T ss_dssp             EECSSCTTEESTTSCE---EC---CCCCTTCEE-------CTTTCCEECCTTEESTTSCE-ECCTTEESTTSC---EECC
T ss_pred             cCCcCCCCCCCCCCCC---CC---CCCCCCCEE-------ECCCCcEeCCCCccCCCccc-ccCCCCCCCCcC---ccCC
Confidence            4588999999999864   34   378899999       33578999999999998873 388999999886   3565


Q ss_pred             -CCCcCCCCccccCCCceEEecCCCCCCCCccCCC------CCCC-CCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCC
Q psy11059        354 -SNPCFNGATCQNKINGYTCVCAPGYSGKECSINI------NECE-SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI  425 (429)
Q Consensus       354 -~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~------~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i  425 (429)
                       ..+|.+++.|.  .++|+|.|++||+|..|+...      +.|. .-+|.++++|.+..   .|.|++||+|.+|+..+
T Consensus       248 ~~~~C~~~g~C~--~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~  322 (423)
T 2gy5_A          248 GQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREG  322 (423)
T ss_dssp             STTTTTTCCEEE--TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBSTTSCBCS
T ss_pred             CCCCCCCCCEEC--CCCCeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCcCCCCccCc
Confidence             35688888885  567899999999999996411      2232 22788999998764   49999999999999764

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.36  E-value=1.1e-13  Score=112.83  Aligned_cols=104  Identities=28%  Similarity=0.670  Sum_probs=82.0

Q ss_pred             CCCCCCCCCCCCCCCeeCCccccCC-CCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCCCcCCCCccccCCC
Q psy11059        290 ELTGCVGPDTCLNGGTCKPYLVDET-QHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKIN  368 (429)
Q Consensus       290 ~~~~C~~~~~C~~~~~C~~~~~~~~-~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g  368 (429)
                      ++++|.. ++|.+  +|    ++ . .++|.|.|++||+|...+         ...|.   ++|...+|.  ++|++ .+
T Consensus         3 dideC~~-~pC~~--~C----~~-~~~g~y~C~C~~Gy~g~~~~---------~~~C~---~~C~~~~C~--~~C~~-~~   59 (118)
T 1dx5_I            3 PVDPCFR-ANCEY--QC----QP-LDQTSYLCVCAEGFAPIPHE---------PHRCQ---MFCNQTACP--ADCDP-NT   59 (118)
T ss_dssp             CCCGGGG-CCCSS--EE----EE-CSSSCEEEECCTTEEEETTE---------EEEEE---ECCCSSEEE--CEECT-TS
T ss_pred             ccccCCC-CCCCC--CC----CC-CCCCCEEeECCCCccccCCC---------CCccc---cccCCCCCC--CcccC-CC
Confidence            5667765 88873  88    65 6 789999999999876322         12232   134555665  68888 58


Q ss_pred             ceEEecCCCCC---CCCccCCCCCCCC-CCCCCCCEEccCCCCeeeeCCCCCCCC
Q psy11059        369 GYTCVCAPGYS---GKECSININECES-SPCLHGATCIDEVATFSCVCPKGLTGR  419 (429)
Q Consensus       369 ~~~C~C~~G~~---G~~C~~~~~~C~~-~~C~~~~~C~~~~~~~~C~C~~g~~G~  419 (429)
                      +|+|.|++||+   |..| ++|++|.. ++|  +++|+++.++|+|.|++||+|.
T Consensus        60 ~y~C~C~~Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           60 QASCECPEGYILDDGFIC-TDIDECENGGFC--SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             TTCEECCTTEEEETTTEE-EECCHHHHCSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             CeEeECCCCccCCCCCcc-ccccccCCCCCC--cCeEEeCCCCEEEECCCCCccC
Confidence            89999999999   8899 58999987 899  6899999999999999999875

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.35  E-value=9.7e-14  Score=113.22  Aligned_cols=107  Identities=27%  Similarity=0.609  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCCCCCCCCCEeccCC-CCceEEecCCCCcccccccccCcCCCCCCCCCCC--CCCCCCCCCCCCCCeEeeC
Q psy11059          6 ISLSSPCDAQRNPCQNGGKCNEDE-TGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS--NQICTTAPPCLNGATCRPQ   82 (429)
Q Consensus         6 ~~~~~~C~~~~~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~--~~~C~~~~~C~~~g~C~~~   82 (429)
                      +.++|||  ..+||++  +|+ +. .++|+|+|++||+            |..++  ++  ..+|. ..+|.  ++|+  
T Consensus         1 ~~dideC--~~~pC~~--~C~-~~~~g~y~C~C~~Gy~------------g~~~~--~~~C~~~C~-~~~C~--~~C~--   56 (118)
T 1dx5_I            1 VEPVDPC--FRANCEY--QCQ-PLDQTSYLCVCAEGFA------------PIPHE--PHRCQMFCN-QTACP--ADCD--   56 (118)
T ss_dssp             CCCCCGG--GGCCCSS--EEE-ECSSSCEEEECCTTEE------------EETTE--EEEEEECCC-SSEEE--CEEC--
T ss_pred             CCccccC--CCCCCCC--CCC-CCCCCCEEeECCCCcc------------ccCCC--CCccccccC-CCCCC--Cccc--
Confidence            3578999  7899985  999 88 8999999999999            54332  22  00344 45555  6898  


Q ss_pred             CCCCCeeeeCCCCCcccCCCCCCCCCCCCeEecCCCceeCCeeccCCCCCCCCCCCC-CCCCCCCeEeeCCCCccccCCC
Q psy11059         83 LTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSS-NPCLNDGVCVDVYKGRYCELPE  161 (429)
Q Consensus        83 ~~~~~~~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~~~g~~G~~C~~~~i~~C~~-~~C~~~g~C~~~~~g~~C~~~~  161 (429)
                      + .++|+|.|++||+...                         |..|+  +||+|.. ++|  +++|+++.++|.|.   
T Consensus        57 ~-~~~y~C~C~~Gy~~~~-------------------------g~~C~--dideC~~~~~C--~~~C~n~~g~y~C~---  103 (118)
T 1dx5_I           57 P-NTQASCECPEGYILDD-------------------------GFICT--DIDECENGGFC--SGVCHNLPGTFECI---  103 (118)
T ss_dssp             T-TSTTCEECCTTEEEET-------------------------TTEEE--ECCHHHHCSSC--SSEEEECSSSEEEE---
T ss_pred             C-CCCeEeECCCCccCCC-------------------------CCccc--cccccCCCCCC--cCeEEeCCCCEEEE---
Confidence            6 5889999999976210                         45664  8899987 889  67999999999998   


Q ss_pred             CCCCCCCCCCCCceecCCcccC
Q psy11059        162 IGDCSSNPCLNDGVCVDVYKGR  183 (429)
Q Consensus       162 ~~~C~~~~C~~~~~C~~~~~G~  183 (429)
                                    |..||+|.
T Consensus       104 --------------C~~G~~g~  111 (118)
T 1dx5_I          104 --------------CGPDSALA  111 (118)
T ss_dssp             --------------ECSSSSCE
T ss_pred             --------------CCCCCccC
Confidence                          99999874

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.34  E-value=6.8e-13  Score=102.76  Aligned_cols=87  Identities=28%  Similarity=0.609  Sum_probs=68.7

Q ss_pred             CeeeeCCCCCCCCCCccCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCc-cCCCc
Q psy11059        273 GYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD-VDFDE  351 (429)
Q Consensus       273 ~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~-~~i~~  351 (429)
                      +|+|.|.+||+|..|+  +++|.. .+|.+           ..++|.|.|++||.                .|+ +++++
T Consensus         1 sy~C~C~~g~~g~~c~--~~~c~~-~pC~n-----------~~~~y~C~C~~G~~----------------~C~~~~~~~   50 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQ--QHQSWL-RPVLR-----------SNRVEYCWCNSGRA----------------QCHSVPVKS   50 (91)
T ss_dssp             CCCCCCBCSSSCCBCC--SSCEEE-EECSS-----------SSCEEEEECSSSCC----------------BCCEECEEE
T ss_pred             CeeeECCCCCcCCeEC--CCcccC-Ccccc-----------CCCCcEeECCCCCc----------------ccccCcCCc
Confidence            4788888888888773  445544 44432           45678999998885                343 47899


Q ss_pred             CCCCCcCCCCccccCC--CceEEecCCCCCCCCccCCCCC
Q psy11059        352 CLSNPCFNGATCQNKI--NGYTCVCAPGYSGKECSININE  389 (429)
Q Consensus       352 C~~~~C~~~~~C~~~~--g~~~C~C~~G~~G~~C~~~~~~  389 (429)
                      |..+||.++++|++..  ++|+|.|++||+|+.|++++++
T Consensus        51 C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ide   90 (91)
T 1tpg_A           51 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA   90 (91)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSSC
T ss_pred             ccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCCCC
Confidence            9999999999999987  8999999999999999888775

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.34  E-value=7.7e-13  Score=100.44  Aligned_cols=72  Identities=26%  Similarity=0.709  Sum_probs=63.5

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQ   86 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~   86 (429)
                      .++|||+. ++||.+ |+|+ ++.++|+|.|++||+++          |..|+ +++  +|...++|.+ ++|+  ++.+
T Consensus         3 ~dideC~~-~~~C~~-g~C~-n~~g~y~C~C~~Gy~~~----------g~~C~-did--eC~~~~~C~~-~~C~--n~~g   63 (82)
T 1emn_A            3 VDMDECKE-PDVCKH-GQCI-NTDGSYRCECPFGYILA----------GNECV-DTD--ECSVGNPCGN-GTCK--NVIG   63 (82)
T ss_dssp             CCCCSSSS-TTSCSS-SEEC-CCSSCCCEECCTTEEEE----------TTEEE-ECC--GGGTCCTTSS-SCEE--ECSS
T ss_pred             CccccCCC-CCCcCC-CEEE-ecCCCEEEECCCCeECC----------CCccC-Ccc--cccCCCCCCC-CEeE--CCCC
Confidence            47899953 689986 8999 99999999999999865          99995 888  9975688986 6999  9999


Q ss_pred             CeeeeCCCCCc
Q psy11059         87 LYECVCPPGYK   97 (429)
Q Consensus        87 ~~~C~C~~Gy~   97 (429)
                      +|+|.|++||+
T Consensus        64 ~y~C~C~~G~~   74 (82)
T 1emn_A           64 GFECTCEEGFE   74 (82)
T ss_dssp             SEEECCSSSSC
T ss_pred             CEEeECCCCeE
Confidence            99999999998

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.32  E-value=5.4e-14  Score=119.54  Aligned_cols=118  Identities=26%  Similarity=0.713  Sum_probs=87.6

Q ss_pred             cCCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCc-------ccccCCCccCCCCccCCCcCCCCCcCCCC
Q psy11059        289 VELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE-------KCFCRPGFAGDHCDVDFDECLSNPCFNGA  361 (429)
Q Consensus       289 ~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~-------~C~C~~g~~g~~C~~~i~~C~~~~C~~~~  361 (429)
                      .++++|.. ++|.+ ++|    ++ +.++|.|.|++||+|..+.       ...|..+|.|..|+.++++|..     .+
T Consensus         2 ~dideC~~-~pC~n-g~C----~n-~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~-----~~   69 (147)
T 2w86_A            2 ADIDECES-SPCIN-GVC----KN-SPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATL-----KS   69 (147)
T ss_dssp             CCCCGGGG-CCSBT-SEE----EE-ETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEEC-----HH
T ss_pred             CcCccCcC-CCCCC-CEe----EC-CCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCcccc-----CC
Confidence            46778887 89975 699    65 7889999999999976543       1235556667777766665532     12


Q ss_pred             ccccCCC----------ceEEecCCCCC---CCCccCCCCCCCC--CCCCCCCEEccCCCCeeeeCCCCCCCCC
Q psy11059        362 TCQNKIN----------GYTCVCAPGYS---GKECSININECES--SPCLHGATCIDEVATFSCVCPKGLTGRL  420 (429)
Q Consensus       362 ~C~~~~g----------~~~C~C~~G~~---G~~C~~~~~~C~~--~~C~~~~~C~~~~~~~~C~C~~g~~G~~  420 (429)
                      .|.+..+          .|.|.|++||+   |..|+ +||+|..  .+|.+ ++|+++.++|+|.|++||+|..
T Consensus        70 ~C~~~~g~~~g~~C~~c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           70 QCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             HHHTTTCSEETTTTEECCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             ccccCcCcccCCCcccCCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCCccCC
Confidence            2322222          27889999995   89996 8999984  45986 5999999999999999999764

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-12  Score=100.71  Aligned_cols=77  Identities=34%  Similarity=0.873  Sum_probs=69.1

Q ss_pred             CCCcCCCCC--cCCCCccccCCCceEEecCCCCC----CCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCC
Q psy11059        348 DFDECLSNP--CFNGATCQNKINGYTCVCAPGYS----GKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC  421 (429)
Q Consensus       348 ~i~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C  421 (429)
                      +|++|..+|  | ++++|++.+++|+|.|++||+    |..|+ ++++|...+|.  ++|+++.++|+|.|+ ||.|..+
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~~   76 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFKL   76 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCBC
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCcc
Confidence            689998877  8 789999999999999999998    88995 89999988997  699999999999998 8888888


Q ss_pred             CCCCCCCC
Q psy11059        422 ETNIDDCE  429 (429)
Q Consensus       422 ~~~i~~C~  429 (429)
                      +.++..|+
T Consensus        77 ~~~~~~C~   84 (87)
T 1z6c_A           77 AQDQKSCE   84 (87)
T ss_dssp             CTTSSSCB
T ss_pred             cCCCCcce
Confidence            88877773

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.26  E-value=9.5e-14  Score=117.99  Aligned_cols=125  Identities=28%  Similarity=0.551  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccc---------cccCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVG---------LANQTLGSIHCETPISNQICTTAPPCLNGA   77 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~---------~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g   77 (429)
                      .++|||  +++||.+ |+|+ ++.++|+|+|++||+|+..+         .|..++.|..|+.+++  +|.      .++
T Consensus         2 ~dideC--~~~pC~n-g~C~-n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~--~c~------~~~   69 (147)
T 2w86_A            2 ADIDEC--ESSPCIN-GVCK-NSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININ--GAT------LKS   69 (147)
T ss_dssp             CCCCGG--GGCCSBT-SEEE-EETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEE--EEE------CHH
T ss_pred             CcCccC--cCCCCCC-CEeE-CCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCC--ccc------cCC
Confidence            368999  6799986 7999 99999999999999955210         1112222333333222  221      111


Q ss_pred             eEeeCCCCCCeeeeCCCCCcccCCCCCCCCCCCCeEecCCCce-eCCee---ccCCCCCCCCCCCCCC--CCCCCeEeeC
Q psy11059         78 TCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVT-IQVYK---GRYCELPEIGDCSSNP--CLNDGVCVDV  151 (429)
Q Consensus        78 ~C~~~~~~~~~~C~C~~Gy~~~~~C~~~~C~~~g~C~~~~~C~-~~g~~---G~~C~~~~i~~C~~~~--C~~~g~C~~~  151 (429)
                      .|.  +..+++         .     ..+|.   .|.  ..|. ++||+   |..|+  +||||..+|  |.+ ++|+++
T Consensus        70 ~C~--~~~g~~---------~-----g~~C~---~c~--~~C~C~~Gy~~~~g~~C~--dideC~~~~~~C~~-g~C~n~  125 (147)
T 2w86_A           70 QCC--SSLGAA---------W-----GSPCT---LCQ--VDPICGKGYSRIKGTQCE--DIDECEVFPGVCKN-GLCVNT  125 (147)
T ss_dssp             HHH--TTTCSE---------E-----TTTTE---ECC--CCTTTCTTEEEEETTEEE--ECCHHHHSTTCSSS-SEEEEE
T ss_pred             ccc--cCcCcc---------c-----CCCcc---cCC--CcccCCCccccCCCCccC--ccccccCCCCCCCC-CEEECC
Confidence            122  111110         0     00110   010  1155 66774   88898  899998554  986 599999


Q ss_pred             CCCccccCCCCCCCCCCCCCCCceecCCcccCC
Q psy11059        152 YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRY  184 (429)
Q Consensus       152 ~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~  184 (429)
                      .++|.|.                 |..||+|..
T Consensus       126 ~g~y~C~-----------------C~~Gy~g~~  141 (147)
T 2w86_A          126 RGSFKCQ-----------------CPSGMTLDA  141 (147)
T ss_dssp             TTEEEEE-----------------CCTTCCBCT
T ss_pred             CCCEEee-----------------CCCCCccCC
Confidence            9999998                 999998753

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.24  E-value=5.1e-12  Score=95.85  Aligned_cols=70  Identities=36%  Similarity=0.925  Sum_probs=62.9

Q ss_pred             CCCcCCC-CCcCCCCccccCCCceEEecCCCCC--CCCccCCCCCCC-CCCCCCCCEEccCCCCeeeeCCCCCCCCC
Q psy11059        348 DFDECLS-NPCFNGATCQNKINGYTCVCAPGYS--GKECSININECE-SSPCLHGATCIDEVATFSCVCPKGLTGRL  420 (429)
Q Consensus       348 ~i~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~--G~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~G~~  420 (429)
                      +|++|.. .||.+ ++|++..++|+|.|++||+  |..| +++++|. .++|.+ ++|+++.++|+|.|++||+|..
T Consensus         4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCCS
T ss_pred             ccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCCCCEEeECCCCeEeCC
Confidence            7899985 78975 8999999999999999997  8999 4899997 788986 5999999999999999999863

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.21  E-value=1.1e-12  Score=113.24  Aligned_cols=113  Identities=28%  Similarity=0.722  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCc--CCCC--Cc--CCCCcc
Q psy11059        290 ELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDE--CLSN--PC--FNGATC  363 (429)
Q Consensus       290 ~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~--C~~~--~C--~~~~~C  363 (429)
                      ++++|...++|. +++|    ++ +.++|+|.|++||++..          .|..|+ ++++  |...  +|  ..+++|
T Consensus         2 dideC~~~~~C~-~~~C----~n-~~gsy~C~C~~Gy~~~~----------~g~~C~-d~~~~~C~~~~~~c~~~~~~~C   64 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNC----VN-TPGSYICDCPPDFELNP----------TRVGCV-DTRSGNCYLDIRPRGDNGDTAC   64 (162)
T ss_dssp             CCCGGGSTTSSB-TSEE----EE-ETTEEEEECCTTCEECT----------TSSBEE-CCCCEEEEEEC----------C
T ss_pred             ccccCCCCCCCC-CCEe----EC-CCCCEEEeCCCCCeECC----------CCCccc-CCCCCcccCCCcccCCCCCCcc
Confidence            466777447886 6899    65 78999999999998431          244554 5554  6432  23  245667


Q ss_pred             ccCCC----ceEEecCCCC---------------------------CCC---CccCCCCCCCC--CCCCCCCEEccCCCC
Q psy11059        364 QNKIN----GYTCVCAPGY---------------------------SGK---ECSININECES--SPCLHGATCIDEVAT  407 (429)
Q Consensus       364 ~~~~g----~~~C~C~~G~---------------------------~G~---~C~~~~~~C~~--~~C~~~~~C~~~~~~  407 (429)
                      ++..+    +|+|.|++||                           ++.   .+.++||+|..  .+|.+ ++|+++.++
T Consensus        65 ~~~~~~~~~~~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~gs  143 (162)
T 1uzk_A           65 SNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGS  143 (162)
T ss_dssp             EEEEEEEECHHHHHTTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECSSC
T ss_pred             cCCcCCcccCceeeCCCCCCcCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCCCC
Confidence            66555    4556555554                           432   12258999975  46986 699999999


Q ss_pred             eeeeCCCCCCCCC
Q psy11059        408 FSCVCPKGLTGRL  420 (429)
Q Consensus       408 ~~C~C~~g~~G~~  420 (429)
                      |+|.|++||+|..
T Consensus       144 y~C~C~~Gy~g~~  156 (162)
T 1uzk_A          144 FQCRCPTGYYLNE  156 (162)
T ss_dssp             EEEECCTTCCBCT
T ss_pred             EEeeCCCCccCCC
Confidence            9999999999864

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.21  E-value=1.1e-11  Score=100.32  Aligned_cols=72  Identities=28%  Similarity=0.661  Sum_probs=56.2

Q ss_pred             CCCCCCCCCCCC--------CCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCC
Q psy11059          7 SLSSPCDAQRNP--------CQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGA   77 (429)
Q Consensus         7 ~~~~~C~~~~~~--------C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g   77 (429)
                      .++|||  ..+|        |.++|+|+ +..++|+|.|++||+            |..|+..++.++|. ....|.+  
T Consensus         4 ~d~d~C--~~~p~~~~C~~~C~~~g~C~-~~~~~y~C~C~~G~~------------G~~C~~~~~~~~C~~~~~~C~~--   66 (114)
T 1aut_L            4 VDGDQC--LVLPLEHPCASLCCGHGTCI-DGIGSFSCDCRSGWE------------GRFCQREVSFLNCSLDNGGCTH--   66 (114)
T ss_dssp             ----CC--CCCSSCCSSSSTTTTSEEEC-CCSSCCCEEECTTEE------------STTSCEECCSSSSSSGGGGCSS--
T ss_pred             eecccc--cCCCccccccccCCCcCCCC-CCCCCcEeeCCCCCc------------CCCcCcCCcCCcCcCCCCCCCC--
Confidence            468899  6788        99999999 999999999999999            88998543212676 1234544  


Q ss_pred             eEeeCCCCCCeeeeCCCCCc
Q psy11059         78 TCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        78 ~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +|+  ++.++|+|.|++||+
T Consensus        67 ~C~--n~~g~y~C~C~~G~~   84 (114)
T 1aut_L           67 YCL--EEVGWRRCSCAPGYK   84 (114)
T ss_dssp             EEE--ECSSSEEEECCTTEE
T ss_pred             EeE--CCCCCEEeECCCCee
Confidence            999  999999999999998

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.20  E-value=1.1e-11  Score=128.72  Aligned_cols=138  Identities=28%  Similarity=0.667  Sum_probs=99.1

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCC-----------CccccCC------C-----CeeeeCC------CCCCC
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKH-----------GSCVDKR------A-----GYFCDCP------PTYGG  284 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~-----------~~C~~~~------~-----~~~C~C~------~G~~g  284 (429)
                      .+|.++|+| .    .+.|.|++||+|..|+.           ..|....      +     ..+|.|+      +||+|
T Consensus       435 ~~Cs~~G~C-~----~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G~C~C~~~~~~~~G~~G  509 (687)
T 3k6s_B          435 SLCHGKGFL-E----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYG  509 (687)
T ss_dssp             STGGGSEEE-S----SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEETTEEEECCCCSTTCCEES
T ss_pred             CCCCCCCEE-e----CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeCCEEEcCCCCCCCCCccc
Confidence            579899999 3    46899999999999982           1244221      0     1378999      99999


Q ss_pred             CCCccCCCCCCCC--CCCCC--CCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCCCcCCCC---Cc
Q psy11059        285 KNCSVELTGCVGP--DTCLN--GGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSN---PC  357 (429)
Q Consensus       285 ~~c~~~~~~C~~~--~~C~~--~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i~~C~~~---~C  357 (429)
                      ..|+.+...|...  .+|.+  +|+|    ..     ..|.|++||+|..|+   |+         .+++.|...   +|
T Consensus       510 ~~Ce~~~~~C~~~~~~~C~~~~~G~C----~~-----g~C~C~~G~~G~~Ce---c~---------~~~~~C~~~~g~~C  568 (687)
T 3k6s_B          510 QYCECDTINCERYNGQVCGGPGRGLC----FC-----GKCRCHPGFEGSACQ---CE---------RTTEGCLNPRRVEC  568 (687)
T ss_dssp             TTSCEESSCSCEETTEETSHHHHEEE----ET-----TEEEECTTCCSTTSC---SC---------CSSCTTBCTTCSBT
T ss_pred             cccccccccccCCCCcCcCCCCCCeE----EC-----CEEEcCCCCcCCCCc---cC---------CCCCCCCCCCCCCC
Confidence            9998767778641  35777  7787    22     378888888777654   11         234566553   79


Q ss_pred             CCCCccccCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEc
Q psy11059        358 FNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCI  402 (429)
Q Consensus       358 ~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~  402 (429)
                      .++|+|+.    ++|.|++||+|+.|+. ...| +.+|.+++.|+
T Consensus       569 s~~G~C~~----g~C~C~~Gy~G~~Ce~-c~~C-~~~C~~~g~Cv  607 (687)
T 3k6s_B          569 SGRGRCRC----NVCECHSGYQLPLCQE-CPGC-PSPCGKYISCA  607 (687)
T ss_dssp             SSSCCBCS----SCBCCSTTCCTTTTCC-CTTS-CCCCTTTHHHH
T ss_pred             CCCCcCCC----CEEECCCCCcCCCCCC-CCCC-CcccCCCCCCC
Confidence            99999987    3799999999999974 2356 46788888775

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.19  E-value=7.2e-12  Score=130.22  Aligned_cols=143  Identities=22%  Similarity=0.491  Sum_probs=106.8

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCC-------CCCCC---CCCCCCCCeEeeCCC
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISN-------QICTT---APPCLNGATCRPQLT   84 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~-------~~C~~---~~~C~~~g~C~~~~~   84 (429)
                      .+.+|+++|+|.     .++|.|.+||+            |..|+.+++.       ..|..   ..+|.++|+|+  ..
T Consensus       433 ~s~~Cs~~G~C~-----~g~C~C~~Gy~------------G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~G  493 (687)
T 3k6s_B          433 DRSLCHGKGFLE-----CGICRCDTGYI------------GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CG  493 (687)
T ss_dssp             CSSTGGGSEEES-----SSSEEECSSEE------------STTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE--TT
T ss_pred             CCCCCCCCCEEe-----CCEeEcCCCCc------------CCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEe--CC
Confidence            356899999998     46899999999            8888743320       13651   24599999999  42


Q ss_pred             CCCeeeeCC------CCCc------ccCCCCC---CCCCC--CCeEecCCCce-eCCeeccCCCCC-CCCCCCCC---CC
Q psy11059         85 EQLYECVCP------PGYK------EIRDCTS---NPCLN--DGVCVWMFDVT-IQVYKGRYCELP-EIGDCSSN---PC  142 (429)
Q Consensus        85 ~~~~~C~C~------~Gy~------~~~~C~~---~~C~~--~g~C~~~~~C~-~~g~~G~~C~~~-~i~~C~~~---~C  142 (429)
                          +|.|+      +||+      ++..|..   .+|.+  +|+|+.. .|. .+||+|..|+.. +++.|...   +|
T Consensus       494 ----~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g-~C~C~~G~~G~~Cec~~~~~~C~~~~g~~C  568 (687)
T 3k6s_B          494 ----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG-KCRCHPGFEGSACQCERTTEGCLNPRRVEC  568 (687)
T ss_dssp             ----EEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEETT-EEEECTTCCSTTSCSCCSSCTTBCTTCSBT
T ss_pred             ----EEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEECC-EEEcCCCCcCCCCccCCCCCCCCCCCCCCC
Confidence                89999      9998      3667873   46988  9999853 299 999999999831 36788764   79


Q ss_pred             CCCCeEeeCCCCccccCCCCCCCCCCCCCCCceecCCcccCCcccCCCCCCCCCCCCCCCEEe
Q psy11059        143 LNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCV  205 (429)
Q Consensus       143 ~~~g~C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~G~~c~~~~~~~C~~~~C~~~~~C~  205 (429)
                      .++|+|+.    ..|.                 |.+||+|..|+.  ...|. ++|.++++|+
T Consensus       569 s~~G~C~~----g~C~-----------------C~~Gy~G~~Ce~--c~~C~-~~C~~~g~Cv  607 (687)
T 3k6s_B          569 SGRGRCRC----NVCE-----------------CHSGYQLPLCQE--CPGCP-SPCGKYISCA  607 (687)
T ss_dssp             SSSCCBCS----SCBC-----------------CSTTCCTTTTCC--CTTSC-CCCTTTHHHH
T ss_pred             CCCCcCCC----CEEE-----------------CCCCCcCCCCCC--CCCCC-cccCCCCCCC
Confidence            99999976    3466                 999999999984  23453 4677666665

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.18  E-value=1e-11  Score=104.67  Aligned_cols=75  Identities=31%  Similarity=0.576  Sum_probs=63.3

Q ss_pred             cccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCC---eE
Q psy11059          3 FKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGA---TC   79 (429)
Q Consensus         3 ~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g---~C   79 (429)
                      +....++|+|  .++||+++|+|+ +..++|+|.|++||+            |..|+.+++  +|. ..++.+++   +|
T Consensus        41 ~~~c~did~C--~~~pC~n~g~C~-~~~g~y~C~C~~G~~------------G~~C~~~~~--~c~-~c~~~~~~C~~~C  102 (142)
T 2c4f_L           41 WISYSDGDQC--ASSPCQNGGSCK-DQLQSYICFCLPAFE------------GRNCETHKD--DQL-ICVNENGGCEQYC  102 (142)
T ss_dssp             HHHHTTCCGG--GGCCCCTTCEEE-EETTEEEEECCTTEE------------STTSCEEGG--GCC-STTTGGGGCSSEE
T ss_pred             cccCCccCcC--cCCCcCCCCEEe-CCCCCEEeeCCCCcc------------CCccccCcc--ccc-cccCCCCCccCEe
Confidence            3445689999  689999999999 999999999999999            999986566  665 44555555   99


Q ss_pred             eeCCCCC-CeeeeCCCCCc
Q psy11059         80 RPQLTEQ-LYECVCPPGYK   97 (429)
Q Consensus        80 ~~~~~~~-~~~C~C~~Gy~   97 (429)
                      +  ++.+ +|+|.|++||+
T Consensus       103 ~--~~~g~~y~C~C~~Gy~  119 (142)
T 2c4f_L          103 S--DHTGTKRSCRCHEGYS  119 (142)
T ss_dssp             E--CCTTSCCEEECCTTEE
T ss_pred             E--CCCCCCEEEECCCCce
Confidence            9  9898 99999999997

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.17  E-value=5.2e-12  Score=96.78  Aligned_cols=75  Identities=29%  Similarity=0.713  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGATCRPQLTEQ   86 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~~~   86 (429)
                      ++|||+..+++|.+ |+|+ ++.++|+|.|++||++.       ...|..|+ +++  +|. ....|. +++|+  ++.+
T Consensus         2 dideC~~~~~~C~~-g~C~-n~~g~y~C~C~~Gy~~~-------~~~g~~C~-did--eC~~~~~~C~-~~~C~--n~~g   66 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCV-NTPGDFECKCDEGYESG-------FMMMKNCM-DID--ECQRDPLLCR-GGVCH--NTEG   66 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEE-EETTEEEECCCSSEEEC-------TTTSSSEE-ECC--HHHHCSSTTT-TSEEE--EETT
T ss_pred             ccccccCCCCCCCC-CEEE-CCCCCEEeeCCCCcCcc-------CCCCCccC-Ccc--cccCCCCcCC-CCEeE--cCCC
Confidence            68999655566975 6999 99999999999999832       12378897 888  998 233476 58999  9999


Q ss_pred             CeeeeCCCCCc
Q psy11059         87 LYECVCPPGYK   97 (429)
Q Consensus        87 ~~~C~C~~Gy~   97 (429)
                      +|+|.|++||+
T Consensus        67 ~y~C~C~~G~~   77 (86)
T 1lmj_A           67 SYRCECPPGHQ   77 (86)
T ss_dssp             EEEEESCTTSC
T ss_pred             CEEEECcCCcc
Confidence            99999999998

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.16  E-value=1.3e-11  Score=106.17  Aligned_cols=126  Identities=27%  Similarity=0.638  Sum_probs=88.8

Q ss_pred             CCCCCcEeccCC-CCCeeE-eCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCcc--CCCCCCCCCCCCCC------
Q psy11059        234 PCQNGGKCNEDE-TGNYDC-TCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV--ELTGCVGPDTCLNG------  303 (429)
Q Consensus       234 ~C~~~g~C~~~~-~~~~~C-~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~--~~~~C~~~~~C~~~------  303 (429)
                      +|.++++|.... .+.++| .|+++|+|..|+             .|.+||+|..+..  ....|.. -.|.++      
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce-------------~C~~g~~g~~~~~~~~~~~C~~-C~C~~~~~~~~~   67 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE-------------LCDDGYFGDPLGSNGPVRLCRP-CQCNDNIDPNAV   67 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSC-------------EECTTEEEETTCTTSSCEEEEE-CCSTTCBCTTCS
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCc-------------CCCCCCcCCcccccCCCCCCee-CcCCCCCCcccC
Confidence            578889994333 367899 799999999998             4888988865431  1123443 455544      


Q ss_pred             CeeCCccccCCCCCeeee-CCCCccCCCCcccccCCCccCCCCc-cCCCcCCCCCcCCCC------ccccCCCceEEecC
Q psy11059        304 GTCKPYLVDETQHRFNCT-CPSGYHGKICEKCFCRPGFAGDHCD-VDFDECLSNPCFNGA------TCQNKINGYTCVCA  375 (429)
Q Consensus       304 ~~C~~~~~~~~~~~~~C~-C~~G~~G~~C~~C~C~~g~~g~~C~-~~i~~C~~~~C~~~~------~C~~~~g~~~C~C~  375 (429)
                      +.|       ...++.|+ |+++|+|.+|+  +|++||+|..+. ...+.|..-+|...+      +|....|  +|.|+
T Consensus        68 ~~C-------~~~tG~C~~C~~g~~G~~Ce--~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG--~C~C~  136 (162)
T 1klo_A           68 GNC-------NRLTGECLKCIYNTAGFYCD--RCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTG--QCQCL  136 (162)
T ss_dssp             CCB-------CTTTCCBCCBCTTEETTTTC--EECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTC--CCCBC
T ss_pred             Ccc-------cCCCCcccCCCCCCcCCCcC--cCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCC--EeECC
Confidence            355       33467895 99999999999  589999998875 233455554565543      6765443  88999


Q ss_pred             CCCCCCCcc
Q psy11059        376 PGYSGKECS  384 (429)
Q Consensus       376 ~G~~G~~C~  384 (429)
                      ++|+|+.|+
T Consensus       137 ~g~~G~~Cd  145 (162)
T 1klo_A          137 PHVSGRDCG  145 (162)
T ss_dssp             TTEESTTCC
T ss_pred             CCCcCCCCC
Confidence            999998884

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.16  E-value=1.1e-11  Score=94.92  Aligned_cols=69  Identities=36%  Similarity=0.936  Sum_probs=60.4

Q ss_pred             CCCcCCCCC--cCCCCccccCCCceEEecCCCCC-----CCCccCCCCCCCCCC--CCCCCEEccCCCCeeeeCCCCCCC
Q psy11059        348 DFDECLSNP--CFNGATCQNKINGYTCVCAPGYS-----GKECSININECESSP--CLHGATCIDEVATFSCVCPKGLTG  418 (429)
Q Consensus       348 ~i~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~-----G~~C~~~~~~C~~~~--C~~~~~C~~~~~~~~C~C~~g~~G  418 (429)
                      +|++|...|  |.+ ++|++++++|+|.|++||+     |..|+ +|++|...+  |. +++|+++.++|+|.|++||++
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            689998766  865 5999999999999999997     78895 899998666  65 579999999999999999997


Q ss_pred             C
Q psy11059        419 R  419 (429)
Q Consensus       419 ~  419 (429)
                      .
T Consensus        79 ~   79 (86)
T 1lmj_A           79 S   79 (86)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.15  E-value=1.5e-11  Score=104.01  Aligned_cols=74  Identities=30%  Similarity=0.771  Sum_probs=58.1

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCC-CCCCCCCCeE-
Q psy11059          2 YFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTT-APPCLNGATC-   79 (429)
Q Consensus         2 ~~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~-~~~C~~~g~C-   79 (429)
                      ||....++|+|  .++||.++|+|+ +..++|+|.|++||+            |..|+ +++  +|.. ..+|.+  +| 
T Consensus        41 ~~~~c~dideC--~~~pC~n~g~C~-~~~~~y~C~C~~G~~------------G~~C~-~~d--eC~~~~~~C~~--~C~  100 (146)
T 1x7a_L           41 FWKQYVDGDQC--EPNPCLNGGLCK-DDINSYECWCQVGFE------------GKNCE-LDA--TCNIKNGRCKQ--FCK  100 (146)
T ss_dssp             ---------CC--SSCSSCTTCEEE-ECSSCEEEECCSSEE------------STTTC-EEC--CTTSGGGSCSS--BCC
T ss_pred             hhccCCCcCcC--CCCCCCCCCEeE-CCCCCEEEecCCCCc------------CCcCC-CCc--cccCCCCCCcC--CCC
Confidence            34456679999  789999999999 999999999999999            99998 457  8982 346776  89 


Q ss_pred             eeCCCCCCeeeeCCCCCc
Q psy11059         80 RPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        80 ~~~~~~~~~~C~C~~Gy~   97 (429)
                      +  ++.++|+|.|++||+
T Consensus       101 ~--n~~g~y~C~C~~Gy~  116 (146)
T 1x7a_L          101 T--GADSKVLCSCTTGYR  116 (146)
T ss_dssp             C--CSSSCCCCBCCTTEE
T ss_pred             C--CCCCCEEeEcCCCcE
Confidence            8  899999999999987

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.15  E-value=1.4e-11  Score=103.75  Aligned_cols=77  Identities=31%  Similarity=0.813  Sum_probs=67.5

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCC---EEccCCC-CeeeeCCCCCC----CC
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGA---TCIDEVA-TFSCVCPKGLT----GR  419 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~---~C~~~~~-~~~C~C~~g~~----G~  419 (429)
                      +|++|..+||.++++|++..++|+|.|++||+|..|+.+++++...++.+++   +|+++.+ +|+|.|++||+    |.
T Consensus        46 did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~  125 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV  125 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSS
T ss_pred             ccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCC
Confidence            7899999999999999999999999999999999998656776555555555   9999999 99999999999    99


Q ss_pred             CCCCC
Q psy11059        420 LCETN  424 (429)
Q Consensus       420 ~C~~~  424 (429)
                      .|+..
T Consensus       126 ~C~~~  130 (142)
T 2c4f_L          126 SCTPT  130 (142)
T ss_dssp             CEEES
T ss_pred             CCCCC
Confidence            99743

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.14  E-value=1.4e-11  Score=104.14  Aligned_cols=76  Identities=33%  Similarity=0.837  Sum_probs=63.6

Q ss_pred             CCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCCC--CCCCCCEE-ccCCCCeeeeCCCCCC---
Q psy11059        344 HCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS--PCLHGATC-IDEVATFSCVCPKGLT---  417 (429)
Q Consensus       344 ~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~--~C~~~~~C-~~~~~~~~C~C~~g~~---  417 (429)
                      .|. +|++|..+||.++++|++..++|+|.|++||+|..|+ ++++|...  +|.+  +| +++.++|+|.|++||+   
T Consensus        44 ~c~-dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~-~~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~  119 (146)
T 1x7a_L           44 QYV-DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAP  119 (146)
T ss_dssp             -------CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTC-EECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECT
T ss_pred             cCC-CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCC-CCccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCC
Confidence            343 8999999999999999999999999999999999996 56899864  5765  89 9999999999999999   


Q ss_pred             -CCCCCC
Q psy11059        418 -GRLCET  423 (429)
Q Consensus       418 -G~~C~~  423 (429)
                       |..|+.
T Consensus       120 dG~~C~~  126 (146)
T 1x7a_L          120 DQKSCKP  126 (146)
T ss_dssp             TSSSEEE
T ss_pred             CCCcCCC
Confidence             899973

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.14  E-value=6e-12  Score=110.91  Aligned_cols=75  Identities=31%  Similarity=0.754  Sum_probs=24.5

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCC-CCCCCCC-CCCCCCCCeE
Q psy11059          2 YFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI-SNQICTT-APPCLNGATC   79 (429)
Q Consensus         2 ~~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~-~~~~C~~-~~~C~~~g~C   79 (429)
                      ||....++|+|  .++||+++|+|+ +..++|+|.|++||+            |..|+.++ +  +|.. ..+|.+  +|
T Consensus        35 fw~~c~dideC--~~~pC~ngg~C~-n~~g~y~C~C~~Gf~------------G~~Ce~~i~d--eC~~~~~~C~~--~C   95 (195)
T 1nfu_B           35 FWNKYKDGDQC--ETSPCQNQGKCK-DGLGEYTCTCLEGFE------------GKNCELFTRK--LCSLDNGDCDQ--FC   95 (195)
T ss_dssp             -------------------------------------------------------------CC--GGGTGGGGCSS--EE
T ss_pred             ccccCCCCccc--CCCCCCCCCEeE-CCCCCeeEeCCCCce------------eccccccccc--cccCCCCCCCC--Ee
Confidence            45556789999  789999999999 999999999999999            99999767 7  8982 356876  99


Q ss_pred             eeCCCCCCeeeeCCCCCc
Q psy11059         80 RPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        80 ~~~~~~~~~~C~C~~Gy~   97 (429)
                      +  ++.++|+|.|++||+
T Consensus        96 ~--n~~gsy~C~C~~Gy~  111 (195)
T 1nfu_B           96 H--EEQNSVVCSCARGYT  111 (195)
T ss_dssp             E--EETTEEEEECCTTEE
T ss_pred             E--CCCCCeEEECCCCce
Confidence            9  999999999999988

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.10  E-value=2.8e-11  Score=92.85  Aligned_cols=72  Identities=26%  Similarity=0.624  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQL   87 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~   87 (429)
                      ++|||+..+.+| ++++|+ +..++|+|.|++||++.        ..|..|+ +++  +|. .++|.  ++|+  ++.++
T Consensus         2 dideC~~~~~~C-~~~~C~-n~~g~y~C~C~~G~~~~--------~~g~~C~-did--eC~-~~~C~--~~C~--n~~g~   63 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCK-NIPGDFECECPEGYRYN--------LKSKSCE-DID--ECS-ENMCA--QLCV--NYPGG   63 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCC-CBTTBCCCSSSTTCEEE--------TTTTEEE-CCC--HHH-HSCCS--SEEC--CCSSS
T ss_pred             ccccccCCCCCC-CCCEeE-CCCCCEEEECCCCceEC--------CCCCcCC-CcC--eeC-CCCCC--CEEE--ccCCC
Confidence            689995444449 889999 99999999999999943        3478896 888  998 78997  6999  99999


Q ss_pred             eeeeC--CCCCc
Q psy11059         88 YECVC--PPGYK   97 (429)
Q Consensus        88 ~~C~C--~~Gy~   97 (429)
                      |+|.|  .+||+
T Consensus        64 y~C~C~g~~G~~   75 (87)
T 1z6c_A           64 YTCYCDGKKGFK   75 (87)
T ss_dssp             CCEECCSSSCCB
T ss_pred             EEEECCCCcCCc
Confidence            99999  47776

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.08  E-value=1.3e-11  Score=102.83  Aligned_cols=75  Identities=31%  Similarity=0.754  Sum_probs=24.2

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCC-CCCCCCC-CCCCCCCCeE
Q psy11059          2 YFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI-SNQICTT-APPCLNGATC   79 (429)
Q Consensus         2 ~~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~-~~~~C~~-~~~C~~~g~C   79 (429)
                      |+....++|+|  .++||+++|+|+ +..++|+|.|++||+            |..|+.++ +  +|.. ..+|.+  +|
T Consensus        35 ~~~~c~d~d~C--~~~pC~n~g~C~-~~~~~y~C~C~~G~~------------G~~C~~~i~d--~C~~~~~~C~~--~C   95 (134)
T 2vh0_B           35 FWNKYKDGDQC--ETSPCQNQGKCK-DGLGEYTCTCLEGFE------------GKNCELFTRK--LCSLDNGDCDQ--FC   95 (134)
T ss_dssp             -------------------------------------------------------------CC--GGGTGGGGCSS--EE
T ss_pred             ccccCCCcCcC--CCCCCCCcCCcc-cCCCCEEeeCCCCcc------------CCccccCCCC--ccccCCCCCCC--Ee
Confidence            45556789999  789999999999 999999999999999            99998766 7  8982 356776  99


Q ss_pred             eeCCCCCCeeeeCCCCCc
Q psy11059         80 RPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        80 ~~~~~~~~~~C~C~~Gy~   97 (429)
                      +  ++.++|+|.|++||+
T Consensus        96 ~--~~~g~y~C~C~~Gy~  111 (134)
T 2vh0_B           96 H--EEQNSVVCSCARGYT  111 (134)
T ss_dssp             E--EETTEEEEECCTTEE
T ss_pred             E--CCCCCEEEECCCCcE
Confidence            9  889999999999998

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.06  E-value=2.3e-11  Score=107.21  Aligned_cols=76  Identities=33%  Similarity=0.849  Sum_probs=30.6

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCC-CCCCC--CCCCCCCEEccCCCCeeeeCCCCCC----CCC
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI-NECES--SPCLHGATCIDEVATFSCVCPKGLT----GRL  420 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~-~~C~~--~~C~~~~~C~~~~~~~~C~C~~g~~----G~~  420 (429)
                      ++++|..+||.++++|++..++|+|.|++||+|..|+.++ ++|..  .+|.+  +|+++.++|+|.|++||+    |..
T Consensus        41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~  118 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA  118 (195)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred             CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCCCc
Confidence            8999999999999999999999999999999999998667 88986  45765  999999999999999999    999


Q ss_pred             CCCCC
Q psy11059        421 CETNI  425 (429)
Q Consensus       421 C~~~i  425 (429)
                      |+..+
T Consensus       119 C~~~~  123 (195)
T 1nfu_B          119 CIPTG  123 (195)
T ss_dssp             EEESS
T ss_pred             cccCC
Confidence            97543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.05  E-value=8.1e-11  Score=95.18  Aligned_cols=73  Identities=33%  Similarity=0.820  Sum_probs=59.4

Q ss_pred             CCCcCCCCC--------cCCCCccccCCCceEEecCCCCCCCCccCCC--CCCCCC--CCCCCCEEccCCCCeeeeCCCC
Q psy11059        348 DFDECLSNP--------CFNGATCQNKINGYTCVCAPGYSGKECSINI--NECESS--PCLHGATCIDEVATFSCVCPKG  415 (429)
Q Consensus       348 ~i~~C~~~~--------C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~--~~C~~~--~C~~~~~C~~~~~~~~C~C~~g  415 (429)
                      ++++|..+|        |.++++|++..++|+|.|++||+|..|+..+  ++|...  .|.+  +|+++.++|+|.|++|
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~G   82 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAPG   82 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCTT
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCCC
Confidence            678888888        9999999999999999999999999997443  467643  4544  8999999999999999


Q ss_pred             CC----CCCCC
Q psy11059        416 LT----GRLCE  422 (429)
Q Consensus       416 ~~----G~~C~  422 (429)
                      |+    |..|+
T Consensus        83 ~~~~~~g~~C~   93 (114)
T 1aut_L           83 YKLGDDLLQCH   93 (114)
T ss_dssp             EEECTTSSCEE
T ss_pred             eeECCCCCccC
Confidence            99    56665

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.02  E-value=3.6e-11  Score=100.17  Aligned_cols=74  Identities=34%  Similarity=0.890  Sum_probs=29.2

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCC-CCCCC--CCCCCCCEEccCCCCeeeeCCCCCC----CCC
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI-NECES--SPCLHGATCIDEVATFSCVCPKGLT----GRL  420 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~-~~C~~--~~C~~~~~C~~~~~~~~C~C~~g~~----G~~  420 (429)
                      ++++|..+||.++++|++..++|+|.|++||+|..|+..+ ++|..  .+|.+  +|+++.++|+|.|++||+    |..
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~~  118 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA  118 (134)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEECCCCCc
Confidence            7899999999999999999999999999999999998667 88976  35765  899999999999999999    999


Q ss_pred             CCC
Q psy11059        421 CET  423 (429)
Q Consensus       421 C~~  423 (429)
                      |+.
T Consensus       119 C~~  121 (134)
T 2vh0_B          119 CIP  121 (134)
T ss_dssp             EEE
T ss_pred             cCc
Confidence            974

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.01  E-value=6.5e-11  Score=94.38  Aligned_cols=77  Identities=27%  Similarity=0.628  Sum_probs=36.1

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEee
Q psy11059          2 YFKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRP   81 (429)
Q Consensus         2 ~~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~   81 (429)
                      |+...+++|||+....+|.  ++|+ +..++|+|.|++||+|.         +|..|+ +++  +|...++|.  ++|+ 
T Consensus        22 ~~~~~Cd~neC~~~~~~C~--~~C~-n~~g~y~C~C~~Gy~g~---------~g~~C~-did--eC~~~~~C~--~~C~-   83 (107)
T 2w2n_E           22 YFQGAMGTNECLDNNGGCS--YVCN-DLKIGYECLCPDGFQLV---------AQRRCE-DID--ECQDPDTCS--QLCV-   83 (107)
T ss_dssp             CCSCCBSCCGGGTGGGGCS--SEEE-CCSBSCEEECCTTCEEE---------TTTEEE-C--------------------
T ss_pred             cCCCCCcCccCcCCCCCCC--CEeE-eCCCCeEEECCCCcccc---------CCCccc-ccc--ccCCCCCcC--Ceee-
Confidence            5666677888853345675  4999 99999999999999942         258998 888  998457896  6999 


Q ss_pred             CCCCCCeeeeCCCCCc
Q psy11059         82 QLTEQLYECVCPPGYK   97 (429)
Q Consensus        82 ~~~~~~~~C~C~~Gy~   97 (429)
                       ++.++|+|.|++||+
T Consensus        84 -n~~gsy~C~C~~Gy~   98 (107)
T 2w2n_E           84 -NLEGGYKCQCEEGFQ   98 (107)
T ss_dssp             ----------------
T ss_pred             -cCCCCEEEECCCCce
Confidence             999999999999998

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.97  E-value=1.6e-10  Score=92.12  Aligned_cols=75  Identities=27%  Similarity=0.750  Sum_probs=35.9

Q ss_pred             CCccCCCCccCCCcCCCC--CcCCCCccccCCCceEEecCCCCCC---CCccCCCCCCCC-CCCCCCCEEccCCCCeeee
Q psy11059        338 PGFAGDHCDVDFDECLSN--PCFNGATCQNKINGYTCVCAPGYSG---KECSININECES-SPCLHGATCIDEVATFSCV  411 (429)
Q Consensus       338 ~g~~g~~C~~~i~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~G---~~C~~~~~~C~~-~~C~~~~~C~~~~~~~~C~  411 (429)
                      .+|.+..|  ++++|..+  +|.  ++|++..++|+|.|++||+|   ..|+ +|++|.. .+|.  ++|+++.++|+|.
T Consensus        20 ~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~   92 (107)
T 2w2n_E           20 NLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQ   92 (107)
T ss_dssp             CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEE-C--------------------------
T ss_pred             CCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEEEE
Confidence            46677777  57888764  454  58999999999999999997   7896 9999974 7886  6899999999999


Q ss_pred             CCCCCCCC
Q psy11059        412 CPKGLTGR  419 (429)
Q Consensus       412 C~~g~~G~  419 (429)
                      |++||++.
T Consensus        93 C~~Gy~~~  100 (107)
T 2w2n_E           93 CEEGFQLD  100 (107)
T ss_dssp             --------
T ss_pred             CCCCceEC
Confidence            99999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.93  E-value=9.3e-10  Score=105.43  Aligned_cols=78  Identities=37%  Similarity=1.004  Sum_probs=67.7

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCC---CCCCCCCEEccCCCCeeeeCCCCCCCC----C
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES---SPCLHGATCIDEVATFSCVCPKGLTGR----L  420 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~---~~C~~~~~C~~~~~~~~C~C~~g~~G~----~  420 (429)
                      ++++|..+||.++++|++..++|+|.|++||+|..|+.++++|..   .+|.+  +|+++.++|+|.|++||+|.    .
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~~~~~   81 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQ   81 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCTTSSC
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccccccccc
Confidence            678999999999999999999999999999999999889999986   78987  89999999999999999864    4


Q ss_pred             CCCCCCCC
Q psy11059        421 CETNIDDC  428 (429)
Q Consensus       421 C~~~i~~C  428 (429)
                      |. ++++|
T Consensus        82 C~-~~~~c   88 (317)
T 3h5c_B           82 CV-PHDQC   88 (317)
T ss_dssp             CE-ECSSC
T ss_pred             cc-ccccc
Confidence            53 44444

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.93  E-value=9.1e-10  Score=105.51  Aligned_cols=69  Identities=32%  Similarity=0.795  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCC--CCCCCCCCeEeeCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTT--APPCLNGATCRPQLTE   85 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~--~~~C~~~g~C~~~~~~   85 (429)
                      ++|+|  ..+||.++|+|+ +..++|+|.|++||+            |..|+.+++  +|..  .++|.+  +|+  ++.
T Consensus         4 d~~~C--~~~pC~~~g~C~-~~~~~~~C~C~~g~~------------g~~C~~~~~--eC~~~~~~~C~~--~C~--~~~   62 (317)
T 3h5c_B            4 GGSPC--ISQPCLHNGSCQ-DSIWGYTCTCSPGYE------------GSNCELAKN--ECHPERTDGCQH--FCL--PGQ   62 (317)
T ss_dssp             --CCT--TSCCCTTTCCCC-CCSSSCCCCCSSSCC------------SSSSCCCSS--SCCTTCTTSCSS--EEE--CCS
T ss_pred             cCCcC--CCCCCCCCCEeE-CCCCCeEEECCCCCc------------CCccccCcc--cCCCCCCCCCcC--ccc--cCC
Confidence            57899  789999999999 999999999999999            999998999  9983  289988  999  999


Q ss_pred             CCeeeeCCCCCc
Q psy11059         86 QLYECVCPPGYK   97 (429)
Q Consensus        86 ~~~~C~C~~Gy~   97 (429)
                      ++|+|.|++||+
T Consensus        63 g~~~C~C~~g~~   74 (317)
T 3h5c_B           63 ESYTCSCAQGYR   74 (317)
T ss_dssp             SSCEEECCTTEE
T ss_pred             CeeEEecccccc
Confidence            999999999998

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.89  E-value=8.1e-10  Score=75.99  Aligned_cols=48  Identities=25%  Similarity=0.675  Sum_probs=34.5

Q ss_pred             CCCccCCCCCCCCCCCCCCCEE-----ccCCCCeeeeCCCCCCCCCCCCCCCC
Q psy11059        380 GKECSININECESSPCLHGATC-----IDEVATFSCVCPKGLTGRLCETNIDD  427 (429)
Q Consensus       380 G~~C~~~~~~C~~~~C~~~~~C-----~~~~~~~~C~C~~g~~G~~C~~~i~~  427 (429)
                      |..|++++++|.++||.++|+|     ++..++|+|.|++||+|.+||+.|..
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~~   53 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVMA   53 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECCC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCcc
Confidence            4567777888888888888888     45567788888888888888877653

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.84  E-value=2.5e-09  Score=91.88  Aligned_cols=76  Identities=22%  Similarity=0.491  Sum_probs=57.9

Q ss_pred             CCeeEe-CCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCc-cCCCCCCCCCCCCCCC------eeCCccccCCCCCe
Q psy11059        247 GNYDCT-CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCS-VELTGCVGPDTCLNGG------TCKPYLVDETQHRF  318 (429)
Q Consensus       247 ~~~~C~-C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~-~~~~~C~~~~~C~~~~------~C~~~~~~~~~~~~  318 (429)
                      .+.+|+ |.++|+|..|+             +|++||+|..+. .....|.. ..|.+.+      +|       ...++
T Consensus        73 ~tG~C~~C~~g~~G~~Ce-------------~C~~Gy~g~~~~~~~~~~C~~-C~C~~~Gs~~~~~~C-------d~~tG  131 (162)
T 1klo_A           73 LTGECLKCIYNTAGFYCD-------------RCKEGFFGNPLAPNPADKCKA-CACNPYGTVQQQSSC-------NPVTG  131 (162)
T ss_dssp             TTCCBCCBCTTEETTTTC-------------EECTTEEECTTCSSGGGSEEE-CCCCTTTBGGGCCCC-------CTTTC
T ss_pred             CCCcccCCCCCCcCCCcC-------------cCchhhcCCccccCCCCCCee-ccCCCCCccCCCCCC-------CCCCC
Confidence            456895 99999999998             588999998765 22344655 5666654      56       33467


Q ss_pred             eeeCCCCccCCCCcccccCCCccCCCC
Q psy11059        319 NCTCPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       319 ~C~C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                      +|.|++||+|.+|+  .|.+||+|...
T Consensus       132 ~C~C~~g~~G~~Cd--~C~~g~~g~~~  156 (162)
T 1klo_A          132 QCQCLPHVSGRDCG--TCDPGYYNLQS  156 (162)
T ss_dssp             CCCBCTTEESTTCC--EECTTCBCGGG
T ss_pred             EeECCCCCcCCCCC--CCCCCcccCCC
Confidence            99999999999999  58999998754

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.71  E-value=6.3e-09  Score=71.53  Aligned_cols=47  Identities=26%  Similarity=0.560  Sum_probs=38.8

Q ss_pred             CCCCccCCCcCCCCCcCCCCcc-----ccCCCceEEecCCCCCCCCccCCCC
Q psy11059        342 GDHCDVDFDECLSNPCFNGATC-----QNKINGYTCVCAPGYSGKECSININ  388 (429)
Q Consensus       342 g~~C~~~i~~C~~~~C~~~~~C-----~~~~g~~~C~C~~G~~G~~C~~~~~  388 (429)
                      |..|++++++|..+||.++|+|     ++..++|+|.|++||+|+.|+..|.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            4567789999999999999999     5677899999999999999986653

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.63  E-value=1.4e-08  Score=91.03  Aligned_cols=104  Identities=27%  Similarity=0.576  Sum_probs=77.3

Q ss_pred             CCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccC-----CCCccCCCcCCCCCcCCCCccccCCCceEE
Q psy11059        298 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAG-----DHCDVDFDECLSNPCFNGATCQNKINGYTC  372 (429)
Q Consensus       298 ~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g-----~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C  372 (429)
                      ..|.++|+|    ..     +.|.|.+||+|..|+   |+.+...     ..|..   .....+|.++|+|+.    .+|
T Consensus        96 ~~Csg~G~C----~~-----g~C~C~~G~~G~~Ce---c~~~~~~~~~~~~~C~~---~~~~~~Csg~G~C~~----g~C  156 (217)
T 2p28_B           96 SLCHGKGFL----EC-----GICRCDTGYIGKNCE---CQTQGRSSQELEGSCRK---DNNSIICSGLGDCVC----GQC  156 (217)
T ss_dssp             CTTTTSEEE----ET-----TEEEECTTEESTTSC---EECCCCC-GGGGGGGBS---STTSCBGGGTEEEET----TEE
T ss_pred             CccCCCceE----EC-----CEEECCCCccCCccc---ccCcccccccCCCcCCC---CCCCCCCCCCCEEeC----Cce
Confidence            568888898    22     589999999999776   4433221     23321   112457999999985    289


Q ss_pred             ecCCC------CCCCCccCCCCCCCCC---CCCCC--CEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        373 VCAPG------YSGKECSININECESS---PCLHG--ATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       373 ~C~~G------~~G~~C~~~~~~C~~~---~C~~~--~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      .|.+|      |+|..|+.+++.|...   +|..+  |+|..    .+|.|.+||+|..|+.+
T Consensus       157 ~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~G~~C~~~  215 (217)
T 2p28_B          157 LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQHH  215 (217)
T ss_dssp             EECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEESTTSCEE
T ss_pred             ECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCccCCcCCC
Confidence            99999      5899998777788754   79887  99975    38999999999999854

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.61  E-value=2.8e-08  Score=63.55  Aligned_cols=37  Identities=38%  Similarity=0.950  Sum_probs=34.4

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      ++|+|  .++||.++|+|+ +..++|+|.|++||+            |..|+
T Consensus         2 d~d~C--~~~pC~ngg~C~-~~~~~~~C~C~~G~~------------G~~Ce   38 (39)
T 1edm_B            2 DGDQC--ESNPCLNGGSCK-DDINSYECWCPFGFE------------GKNCE   38 (39)
T ss_dssp             CCCTT--TTCCCCTTCEEE-EETTEEEEECCTTCC------------STTSC
T ss_pred             ccccC--CCCCCCCCCEeE-cCCCceEeECCCCCc------------CCccC
Confidence            57999  789999999999 999999999999999            88886

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.56  E-value=6.6e-08  Score=61.79  Aligned_cols=37  Identities=43%  Similarity=1.203  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCC
Q psy11059        386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       386 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~  422 (429)
                      ++++|..+||.++++|++..++|+|.|++||+|.+|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            5677777777777777777777777787778777776

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.54  E-value=4.1e-08  Score=88.00  Aligned_cols=92  Identities=21%  Similarity=0.458  Sum_probs=69.8

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCC-------CCCC---CCCCCCCCCeEeeCCCC
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISN-------QICT---TAPPCLNGATCRPQLTE   85 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~-------~~C~---~~~~C~~~g~C~~~~~~   85 (429)
                      ...|+++|+|+ .    .+|+|.+||+            |..|+.+.+.       ..|.   ...+|.++|+|+  .  
T Consensus        95 ~~~Csg~G~C~-~----g~C~C~~G~~------------G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~--  153 (217)
T 2p28_B           95 RSLCHGKGFLE-C----GICRCDTGYI------------GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--C--  153 (217)
T ss_dssp             -CTTTTSEEEE-T----TEEEECTTEE------------STTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--T--
T ss_pred             CCccCCCceEE-C----CEEECCCCcc------------CCcccccCcccccccCCCcCCCCCCCCCCCCCCEEe--C--
Confidence            45799999999 3    6899999999            7777754320       0254   146799999999  4  


Q ss_pred             CCeeeeCCCCC------c------ccCCCCCC---CCCCC--CeEecCCCce-eCCeeccCCCC
Q psy11059         86 QLYECVCPPGY------K------EIRDCTSN---PCLND--GVCVWMFDVT-IQVYKGRYCEL  131 (429)
Q Consensus        86 ~~~~C~C~~Gy------~------~~~~C~~~---~C~~~--g~C~~~~~C~-~~g~~G~~C~~  131 (429)
                        .+|+|.+||      +      +++.|...   +|..+  |+|+.. .|. .+||+|..|+.
T Consensus       154 --g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~g-~C~C~~G~~G~~C~~  214 (217)
T 2p28_B          154 --GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG-KCRCHPGFEGSACQH  214 (217)
T ss_dssp             --TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEETT-EEEECTTEESTTSCE
T ss_pred             --CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeCC-eeECCCCCccCCcCC
Confidence              369999995      4      35677754   79888  999963 399 99999999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=1.2e-07  Score=93.62  Aligned_cols=69  Identities=28%  Similarity=0.629  Sum_probs=60.1

Q ss_pred             CCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCee
Q psy11059         10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYE   89 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~   89 (429)
                      |||  ..+++..+++|+ +..++|+|.|++||++         .+|..|+ +++  ||....+|.+  +|+  ++.++|+
T Consensus         1 ~eC--~~~~~~c~~~C~-~~~~~y~C~C~~G~~~---------~~~~~C~-did--eC~~~~~C~~--~C~--n~~g~~~   61 (400)
T 3p5b_L            1 NEC--LDNNGGCSHVCN-DLKIGYECLCPDGFQL---------VAQRRCE-DID--ECQDPDTCSQ--LCV--NLEGGYK   61 (400)
T ss_dssp             CCT--TTTGGGCSSEEE-ECSSSEEEECCTTEEE---------CSSSCEE-ECC--CCSTTSSCSS--CCB--CCSSSCB
T ss_pred             Ccc--cCCCCCCCCEeE-CCCCCeEEECCCCCCc---------CCCCccc-Cch--hhhccCCCCC--ccC--CCcccee
Confidence            689  667777778999 9999999999999983         2488997 888  9985688976  899  9999999


Q ss_pred             eeCCCCCc
Q psy11059         90 CVCPPGYK   97 (429)
Q Consensus        90 C~C~~Gy~   97 (429)
                      |.|++||+
T Consensus        62 C~C~~g~~   69 (400)
T 3p5b_L           62 CQCEEGFQ   69 (400)
T ss_dssp             CCCCTTCC
T ss_pred             eecccccc
Confidence            99999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.40  E-value=7.1e-07  Score=94.47  Aligned_cols=81  Identities=26%  Similarity=0.674  Sum_probs=61.0

Q ss_pred             ccCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCC---CCCccCCCCCCC-CCCCCCCCEEccCCCCeee
Q psy11059        335 FCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS---GKECSININECE-SSPCLHGATCIDEVATFSC  410 (429)
Q Consensus       335 ~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~---G~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C  410 (429)
                      .|..|+.+...+-++++|..++-.-.++|++++++|+|.|++||.   |..|+ +|+||. ..+|.+  +|+++.++|+|
T Consensus       280 dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~y~C  356 (699)
T 1n7d_A          280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKC  356 (699)
T ss_dssp             CSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCC-CCCCCSSSSSCTT--TCCBCSSCBCC
T ss_pred             eecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCccc-CccccCCCCcccc--ccccCCCCeee
Confidence            455554443222256777654311235899999999999999998   78896 899997 567864  79999999999


Q ss_pred             eCCCCCCC
Q psy11059        411 VCPKGLTG  418 (429)
Q Consensus       411 ~C~~g~~G  418 (429)
                      .|++||++
T Consensus       357 ~C~~G~~~  364 (699)
T 1n7d_A          357 QCEEGFQL  364 (699)
T ss_dssp             CCCSSCBC
T ss_pred             eeeccccc
Confidence            99999985

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.39  E-value=3.4e-07  Score=62.69  Aligned_cols=42  Identities=31%  Similarity=0.778  Sum_probs=31.6

Q ss_pred             CCCCCCCC---CCCCCCEEc--cCCCCeeeeCCCCCCCCCCCCCCCC
Q psy11059        386 NINECESS---PCLHGATCI--DEVATFSCVCPKGLTGRLCETNIDD  427 (429)
Q Consensus       386 ~~~~C~~~---~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~~i~~  427 (429)
                      +|++|.+.   ||.++|+|+  +..++|+|.|++||+|.+|+..+.+
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~~   48 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLR   48 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSCC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCcc
Confidence            46677765   788888887  6777888888888888888776544

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.37  E-value=2.5e-07  Score=61.02  Aligned_cols=39  Identities=28%  Similarity=0.645  Sum_probs=31.5

Q ss_pred             CCCCC---CCCCCCEEc--cCCCCeeeeCCCCCCCCCCCCCCCC
Q psy11059        389 ECESS---PCLHGATCI--DEVATFSCVCPKGLTGRLCETNIDD  427 (429)
Q Consensus       389 ~C~~~---~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~~i~~  427 (429)
                      +|.+.   ||.++|+|+  +..++|+|.|++||+|.+|+++|++
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~e   45 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRDLR   45 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCEECCC
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcccCC
Confidence            45555   888888997  6778899999999999999887764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.30  E-value=3e-07  Score=90.81  Aligned_cols=67  Identities=28%  Similarity=0.823  Sum_probs=58.7

Q ss_pred             CcCCCCCcCCCCccccCCCceEEecCCCCC---CCCccCCCCCCC-CCCCCCCCEEccCCCCeeeeCCCCCCCC
Q psy11059        350 DECLSNPCFNGATCQNKINGYTCVCAPGYS---GKECSININECE-SSPCLHGATCIDEVATFSCVCPKGLTGR  419 (429)
Q Consensus       350 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~---G~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~G~  419 (429)
                      +||..+++...+.|++.+++|.|.|++||+   |..|+ +++||. ..+|.+  +|+++.++|+|.|.+||++.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCCC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCccceeeecccccccc
Confidence            467777777778999999999999999998   88995 999997 468875  79999999999999999854

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=1.3e-07  Score=93.09  Aligned_cols=72  Identities=29%  Similarity=0.720  Sum_probs=19.1

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCC----CCCccCCCCCCC-CCCCCCCCEEccCCCCeeeeCCCCCC----C
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYS----GKECSININECE-SSPCLHGATCIDEVATFSCVCPKGLT----G  418 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~----G  418 (429)
                      ++++|..+++.....|.+..++|+|.|++||+    |+.| .++++|. ..+|.+  .|+++.++|+|.|++||+    |
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~d~   78 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDR   78 (386)
T ss_dssp             ---------------------------------------------------CCTT--EEC-----CCEECCTTEEECTTS
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCceEcCCC
Confidence            67899887755556999999999999999998    8899 5999996 678986  499999999999999998    7


Q ss_pred             CCCC
Q psy11059        419 RLCE  422 (429)
Q Consensus       419 ~~C~  422 (429)
                      ..|.
T Consensus        79 ~~C~   82 (386)
T 3v65_B           79 RSCK   82 (386)
T ss_dssp             SCEE
T ss_pred             CeEC
Confidence            7776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=1.4e-07  Score=92.82  Aligned_cols=72  Identities=25%  Similarity=0.539  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQL   87 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~   87 (429)
                      ++|||  ..+++....+|+ +..|+|+|.|++||+        ...+|..| .+++  ||....+|.+  .|+  ++.++
T Consensus         2 ~~~~C--~~~~~~c~~~C~-~~~g~~~C~C~~G~~--------l~~~~~~C-~d~~--eC~~~~~C~~--~C~--~~~g~   63 (386)
T 3v65_B            2 GEENC--NVNNGGCAQKCQ-MIRGAVQCTCHTGYR--------LTEDGRTC-QDVN--ECAEEGYCSQ--GCT--NSEGA   63 (386)
T ss_dssp             ----------------------------------------------------------------CCTT--EEC-------
T ss_pred             CcCcc--cCCCCCCCCCCc-CCCCCcEeECCCCce--------ECCCCCcc-Cccc--eeCCcCcccC--cCC--CCCCC
Confidence            57999  455544444998 999999999999998        22348899 4888  9975679987  499  99999


Q ss_pred             eeeeCCCCCc
Q psy11059         88 YECVCPPGYK   97 (429)
Q Consensus        88 ~~C~C~~Gy~   97 (429)
                      |+|.|++||+
T Consensus        64 ~~C~C~~g~~   73 (386)
T 3v65_B           64 FQCWCEAGYE   73 (386)
T ss_dssp             CCEECCTTEE
T ss_pred             CeEEECCCce
Confidence            9999999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.28  E-value=2.3e-06  Score=90.58  Aligned_cols=157  Identities=23%  Similarity=0.506  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCCCCEeccCCCCceEE----ecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCCC
Q psy11059         11 PCDAQRNPCQNGGKCNEDETGNYDC----TCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGATCRPQLTE   85 (429)
Q Consensus        11 ~C~~~~~~C~~~g~C~~~~~~~~~C----~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~~   85 (429)
                      +|....-.|.+ |+|+ +.  +++|    .|..|+.            ...|..  .  +|. ....|.+ ++|+  +  
T Consensus       175 ~C~~~~f~C~~-g~Ci-~~--~~~CDg~~dC~dgsD------------E~~C~~--~--~C~~~~f~C~~-g~Ci--~--  229 (699)
T 1n7d_A          175 PCSAFEFHCLS-GECI-HS--SWRCDGGPDCKDKSD------------EENCAV--A--TCRPDEFQCSD-GNCI--H--  229 (699)
T ss_dssp             CSCSSSCCCSS-SCCC-ST--TCTTSSSCCSTTSCS------------SCSCCC--C--CCCSSEEESSS-SCEE--E--
T ss_pred             CCCCcceecCC-CceE-ec--hhccCCCCCCCCCcc------------cccCCC--c--ccCCCcEecCC-Ccee--e--
Confidence            34323335654 4676 43  5566    5665555            677753  2  565 2335764 7899  3  


Q ss_pred             CCeeee----CCCCCc-----ccCCCC---CCCCCCCCeEecCCC-----ce-eCCeeccCCCCCCCCCCCCCC--CCCC
Q psy11059         86 QLYECV----CPPGYK-----EIRDCT---SNPCLNDGVCVWMFD-----VT-IQVYKGRYCELPEIGDCSSNP--CLND  145 (429)
Q Consensus        86 ~~~~C~----C~~Gy~-----~~~~C~---~~~C~~~g~C~~~~~-----C~-~~g~~G~~C~~~~i~~C~~~~--C~~~  145 (429)
                      .+++|.    |..|..     .+..|.   ..+|.+ |.|+....     +. ..|+.+...+- ++++|..++  |.  
T Consensus       230 ~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C-~~~eC~~~~~~C~--  305 (699)
T 1n7d_A          230 GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKEC-GTNECLDNNGGCS--  305 (699)
T ss_dssp             TTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSC-CCCCTTSSTTTSC--
T ss_pred             eecccCCCCCCCCCCccCCCCCCCcccCCCceecCC-CcEeCCcccccccceecCccccccccc-ccccccccccCcC--
Confidence            567785    777765     233452   234654 67766432     33 44554443333 567787543  53  


Q ss_pred             CeEeeCCCCccccCCCCCCCCCCCCCCCceecCCcc---cCCcccCCCCCCC-CCCCCCCCEEeeCCCCe-eeccCCC
Q psy11059        146 GVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYK---GRYWELPEIRDCT-SNPCLNDGVCVDEVYKG-RYWELPE  218 (429)
Q Consensus       146 g~C~~~~~g~~C~~~~~~~C~~~~C~~~~~C~~~~~---G~~c~~~~~~~C~-~~~C~~~~~C~~~~~~~-C~C~~~g  218 (429)
                      ++|++..++|.|.                 |.+||+   |..|+  +|+||. ..+|.  ++|+++.++| |.| ++|
T Consensus       306 ~~C~~~~~~~~C~-----------------C~~G~~~~~~~~C~--dideC~~~~~C~--~~C~n~~g~y~C~C-~~G  361 (699)
T 1n7d_A          306 HVCNDLKIGYECL-----------------CPDGFQLVAQRRCE--DIDECQDPDTCS--QLCVNLEGGYKCQC-EEG  361 (699)
T ss_dssp             TTCCCCTTCCCCC-----------------CCSSSCCCSSSCCC--CCCCCSSSSSCT--TTCCBCSSCBCCCC-CSS
T ss_pred             CCcccCCCCcEEe-----------------CCCCeEcCCCCccc--CccccCCCCccc--cccccCCCCeeeee-ecc
Confidence            4899999999998                 999998   77888  899998 46785  5899999999 999 888

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.27  E-value=5.8e-07  Score=59.25  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCCCCCC---CCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         10 SPCDAQRN---PCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        10 ~~C~~~~~---~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ++|  .++   ||+|+|+|+. +..++|+|.|++||+            |..|+.+++
T Consensus         1 ~~C--~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~------------G~~Ce~~~~   44 (45)
T 1a3p_A            1 PGX--PSSYDGYCLNGGVXMHIESLDSYTCNCVIGYS------------GDRCQTRDL   44 (45)
T ss_dssp             CCC--TTCCSSCCSSSCEEEECTTTSSEEEECCTTEE------------TTTTCEECC
T ss_pred             CCc--ccCCCCCCCCCCEEEeecCCCCEEEEcCCCCc------------CCcCCcccC
Confidence            467  566   9999999973 677899999999999            999987654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.27  E-value=6.4e-07  Score=61.29  Aligned_cols=42  Identities=26%  Similarity=0.555  Sum_probs=35.5

Q ss_pred             CCCCCCCCCC---CCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          8 LSSPCDAQRN---PCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         8 ~~~~C~~~~~---~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ++|+|  .++   ||+|+|+|+. +..++|+|.|++||+            |..|+.++.
T Consensus         2 ~i~~C--~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~------------G~~Ce~~~~   47 (53)
T 1egf_A            2 SYPGC--PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS------------GDRCQTRDL   47 (53)
T ss_dssp             EECCC--CTTSSCSSCSSCEEEEESSSSCEEEECCTTCC------------SSSSCCCSC
T ss_pred             CcccC--CCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc------------CCcCCccCc
Confidence            47899  565   9999999984 567899999999999            999987653

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.23  E-value=2.8e-07  Score=65.64  Aligned_cols=41  Identities=29%  Similarity=0.675  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCCEEcc-----CCCCeeeeCCCCCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCID-----EVATFSCVCPKGLTGRLCETNIDDC  428 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~-----~~~~~~C~C~~g~~G~~C~~~i~~C  428 (429)
                      ++|.++||.++|+|++     ..++|+|.|++||+|.+|+++|+++
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~   52 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSS
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCcc
Confidence            4556667777777764     4566777777777777777777665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.22  E-value=1.3e-06  Score=93.30  Aligned_cols=68  Identities=28%  Similarity=0.795  Sum_probs=53.6

Q ss_pred             CCCcCCCCCcCCCCccccCCCceEEecCCCCC---CCCccCCCCCCC-CCCCCCCCEEccCCCCeeeeCCCCCCC
Q psy11059        348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYS---GKECSININECE-SSPCLHGATCIDEVATFSCVCPKGLTG  418 (429)
Q Consensus       348 ~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~---G~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~G  418 (429)
                      ++++|..++..-...|++++++|+|.|++||.   |..|+ +|+||. ..+|.  ++|+++.++|+|.|++||++
T Consensus       311 ~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~l  382 (791)
T 3m0c_C          311 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQL  382 (791)
T ss_dssp             SCCSTTTGGGGCSSEEEECSBSEEEECCTTCEEETTTEEE-CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSEEC
T ss_pred             ccccccccccCccccccCCCCCcccCCCCCCccCCCCccc-cCcccCCCCCCC--CeeecCCCCceeecCCCCEe
Confidence            34566544322234899999999999999995   88996 899997 45665  47999999999999999974

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.20  E-value=2.8e-07  Score=65.64  Aligned_cols=43  Identities=23%  Similarity=0.576  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCCCCCEeccC-----CCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNED-----ETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT   68 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~-----~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~   68 (429)
                      .|+|  .++||+|+|+|+ +     ..++|+|.|++||+            |..|+.+++  ++.
T Consensus         6 c~~C--~~~pC~ngG~C~-~~~~~~~~~~y~C~C~~Gf~------------G~~Ce~~i~--~~~   53 (63)
T 1hae_A            6 CAEK--EKTFCVNGGECF-MVKDLSNPSRYLCKCQPGFT------------GARCTENVP--MKV   53 (63)
T ss_dssp             CCHH--HHTTSCTTCEEE-EEESSSSSCCEEEECCTTEE------------STTSCEECC--SSC
T ss_pred             cCCC--CCCcCCCCcEEe-cCCccCCCCCEEEECCCCCc------------CCccCcCcC--ccc
Confidence            4688  789999999999 5     67899999999999            999998887  665

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.15  E-value=1e-06  Score=58.22  Aligned_cols=38  Identities=24%  Similarity=0.541  Sum_probs=32.1

Q ss_pred             CCCCCCCCC---CCCCCCCEeccCCC--CceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059          8 LSSPCDAQR---NPCQNGGKCNEDET--GNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         8 ~~~~C~~~~---~~C~~~g~C~~~~~--~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      ++|+|  .+   +||.| |+|+ +..  ++|.|.|++||+            |.+||..
T Consensus         2 ~i~~C--~~~~~~pC~n-G~C~-~~~~~~~~~C~C~~Gyt------------G~~Ce~~   44 (46)
T 1k36_A            2 SITKC--SSDMNGYCLH-GQCI-YLVDMSQNYCRCEVGYT------------GVRCEHF   44 (46)
T ss_dssp             CEECC--CTTCCSSCSS-EEEE-EETTTTEEEEEECTTCS------------STTSCCC
T ss_pred             ccccC--CCCCCCCCCC-CEee-ccCCCCCEEEECCCCCc------------cCCCCcc
Confidence            47889  56   89999 8999 643  789999999999            9999854

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.12  E-value=3.3e-06  Score=90.29  Aligned_cols=99  Identities=29%  Similarity=0.734  Sum_probs=64.3

Q ss_pred             CCCCCccccCCC--CeeeeCCCCCCCCCCccCCCCCCCCCCCCCC-CeeCCccccCCCCCeeeeCCCCccCCCCcccccC
Q psy11059        261 PCKHGSCVDKRA--GYFCDCPPTYGGKNCSVELTGCVGPDTCLNG-GTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCR  337 (429)
Q Consensus       261 ~C~~~~C~~~~~--~~~C~C~~G~~g~~c~~~~~~C~~~~~C~~~-~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~  337 (429)
                      .|..+.|++...  .+.+.|..|+....     ..|.. ++|..+ +.|.+...+ ..++|.|.|++||.+.        
T Consensus       280 ~C~~G~Ci~~~~~Cd~~~dC~dgsDe~~-----~~C~~-~~C~~~~~~C~~~C~~-~~~~y~C~C~~Gy~l~--------  344 (791)
T 3m0c_C          280 KCHSGECITLDKVCNMARDCRDWSDEPI-----KECGT-NECLDNNGGCSHVCND-LKIGYECLCPDGFQLV--------  344 (791)
T ss_dssp             CCTTSCCCCSSCCSCSSCCSSSSCSCCC-----TTBSC-CSTTTGGGGCSSEEEE-CSBSEEEECCTTCEEE--------
T ss_pred             ccCCCcccccccccCCccccccccCccc-----ccccc-ccccccccCccccccC-CCCCcccCCCCCCccC--------
Confidence            466666665432  23556777764432     23443 556543 223222255 7889999999999641        


Q ss_pred             CCccCCCCccCCCcCC-CCCcCCCCccccCCCceEEecCCCCCC
Q psy11059        338 PGFAGDHCDVDFDECL-SNPCFNGATCQNKINGYTCVCAPGYSG  380 (429)
Q Consensus       338 ~g~~g~~C~~~i~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~G  380 (429)
                         .|..|+ +|+||. ..+|  ...|+++.++|+|.|++||..
T Consensus       345 ---~g~~C~-dideC~~~~~C--~~~C~n~~gsy~C~C~~Gy~l  382 (791)
T 3m0c_C          345 ---AQRRCE-DIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQL  382 (791)
T ss_dssp             ---TTTEEE-CCCCCSSSSSC--TTTCCBCSSCBCCCCCSSEEC
T ss_pred             ---CCCccc-cCcccCCCCCC--CCeeecCCCCceeecCCCCEe
Confidence               255665 899997 2345  458999999999999999963

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.09  E-value=4.5e-07  Score=91.02  Aligned_cols=78  Identities=33%  Similarity=0.793  Sum_probs=37.3

Q ss_pred             cccCCCccCCCCccCCCcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCC
Q psy11059        334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCP  413 (429)
Q Consensus       334 C~C~~g~~g~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~  413 (429)
                      ..|..+|.|..|+  +++|.. +|.+ ++|+..   ++|.|++||+|..|+  +++|.+ +|.++++|++.   ++|.|+
T Consensus       379 ~~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C~C~  445 (463)
T 2wg3_C          379 EECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKCLCK  445 (463)
T ss_dssp             GGGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSC--EECC-----------------------
T ss_pred             ccCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEEECC
Confidence            4677788888885  467765 5886 799764   489999999999995  567877 99999999765   689999


Q ss_pred             CCCCCCCCCCC
Q psy11059        414 KGLTGRLCETN  424 (429)
Q Consensus       414 ~g~~G~~C~~~  424 (429)
                      +||+|..|+..
T Consensus       446 ~G~~G~~C~~~  456 (463)
T 2wg3_C          446 KGYLGPQCEQV  456 (463)
T ss_dssp             -----------
T ss_pred             CCcccCCCCCC
Confidence            99999999854

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.07  E-value=1.9e-06  Score=56.91  Aligned_cols=38  Identities=42%  Similarity=0.800  Sum_probs=25.6

Q ss_pred             CCCCCCC---CCCCCCCEEccCC--CCeeeeCCCCCCCCCCCCC
Q psy11059        386 NINECES---SPCLHGATCIDEV--ATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       386 ~~~~C~~---~~C~~~~~C~~~~--~~~~C~C~~g~~G~~C~~~  424 (429)
                      ++++|.+   +||.+ |+|+...  ++|+|.|++||+|.+|++.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            3556665   67777 6776533  5677777777777777754

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.06  E-value=5.3e-07  Score=63.29  Aligned_cols=37  Identities=35%  Similarity=0.789  Sum_probs=19.1

Q ss_pred             CCCcCCCCCcCCC--CccccCCCceEEecCCCCC-CCCcc
Q psy11059        348 DFDECLSNPCFNG--ATCQNKINGYTCVCAPGYS-GKECS  384 (429)
Q Consensus       348 ~i~~C~~~~C~~~--~~C~~~~g~~~C~C~~G~~-G~~C~  384 (429)
                      ++++|..+||.++  ++|++..++|+|.|++||+ |..|+
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            4455555555554  4555555555555555555 55553

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.00  E-value=1.2e-06  Score=61.47  Aligned_cols=39  Identities=23%  Similarity=0.618  Sum_probs=33.0

Q ss_pred             cccCCCCCCCCCCCCCCCCC--CEeccCCCCceEEecCCCCc-cc
Q psy11059          3 FKPISLSSPCDAQRNPCQNG--GKCNEDETGNYDCTCDALHT-VC   44 (429)
Q Consensus         3 ~~~~~~~~~C~~~~~~C~~~--g~C~~~~~~~~~C~C~~g~~-g~   44 (429)
                      +.-..++|+|  .++||+|+  |+|+ +..++|+|.|++||+ |.
T Consensus         5 ~~~~~~~d~C--~snPC~nga~gtC~-~~~g~y~C~C~~Gy~~G~   46 (61)
T 2k2s_B            5 VQLSETPAAC--SSNPCGPEAAGTCK-ETNSGYICRCNQGYRISL   46 (61)
T ss_dssp             --CTTSCCHH--HHCSSCSSSCCEEE-ECSSEEEEECCTTEEEEE
T ss_pred             hhhcCCCCcC--cCCCCcCCCccccc-cCCCceEeECCCCCccCC
Confidence            3445678999  78999999  8999 999999999999998 54

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.93  E-value=5.5e-07  Score=61.35  Aligned_cols=42  Identities=31%  Similarity=0.803  Sum_probs=32.3

Q ss_pred             EEecCCCCCCCCccCCCCCCCCCCCCCCCEEcc----CCCCeeeeCCCCCCCCCCCCC
Q psy11059        371 TCVCAPGYSGKECSININECESSPCLHGATCID----EVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       371 ~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~----~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      +|.|++||+            ++||.++|+|++    ..++|+|.|++||+|.+|+..
T Consensus         4 ~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A            4 TYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             CBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             eeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            577777775            357888889975    345788999999999999853

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.60  E-value=2.5e-05  Score=53.16  Aligned_cols=36  Identities=19%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCCCC
Q psy11059         15 QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI   62 (429)
Q Consensus        15 ~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~   62 (429)
                      ..+||.|+|+|+. +..++|+|.|++||+            |..|++.+
T Consensus        10 ~~~pC~nGG~C~~~~~~~~~~C~C~~Gyt------------G~~Ce~~~   46 (53)
T 1nql_B           10 HDGYCLHDGVCMYIEALDKYACNCVVGYI------------GERCQYRD   46 (53)
T ss_dssp             TCCEECTTCEEEEETTTTEEEEEECTTEE------------STTSCEEC
T ss_pred             CCCCCCCCeEEeeecCCCCEEEecCCCCc------------CCCCCcCC
Confidence            4789999999973 567889999999999            99998643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.57  E-value=4.4e-05  Score=55.42  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEec-CCCCccc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTC-DALHTVC   44 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C-~~g~~g~   44 (429)
                      ++|||+..+++|.++++|+ ++.|+|+|.+ ..||+++
T Consensus         2 DidEC~~~~~~C~~~~~C~-Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCI-NHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEE-ETTCCEEEEETTSCCCSC
T ss_pred             ccccccCCCCCCCCCCEeE-CCCCCeEecccCCccccc
Confidence            6899976678999999999 9999999984 5677744

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.56  E-value=2e-05  Score=53.64  Aligned_cols=34  Identities=26%  Similarity=0.787  Sum_probs=24.2

Q ss_pred             CCCCCCCCEEc--cCCCCeeeeCCCCCCCCCCCCCC
Q psy11059        392 SSPCLHGATCI--DEVATFSCVCPKGLTGRLCETNI  425 (429)
Q Consensus       392 ~~~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~~i  425 (429)
                      .+||.++|+|+  +..++|+|+|++||+|.+|++.+
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence            45677777776  55667777777777777777543

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.55  E-value=3.4e-05  Score=75.25  Aligned_cols=48  Identities=29%  Similarity=0.740  Sum_probs=0.0

Q ss_pred             CCcCCCCccccCCCceEEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCC
Q psy11059        355 NPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPK  414 (429)
Q Consensus       355 ~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~  414 (429)
                      .+|.++++|++..   +|.|++||+|..|+.       .+|.++|+|....|  +|.=+.
T Consensus       371 ~~C~ngg~C~~~~---~C~C~~G~~G~~Ce~-------c~C~~~g~C~~~~G--qc~~~~  418 (426)
T 3zyj_B          371 LHCQNGGTCHNNV---RCLCPAAYTGILCEK-------LRCEEAGSCGSDSG--QGAPPH  418 (426)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccCCCCCCcCCCC---CCcCCCCCcCCCCcC-------CCCCCCCcccCCCC--ccCCCC
Confidence            4788999998765   899999999998852       35777888866543  454443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.52  E-value=1.1e-05  Score=80.91  Aligned_cols=73  Identities=29%  Similarity=0.605  Sum_probs=35.1

Q ss_pred             EEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc----ccCCCCCCCCCC
Q psy11059         34 DCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK----EIRDCTSNPCLN  109 (429)
Q Consensus        34 ~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~----~~~~C~~~~C~~  109 (429)
                      ..+|..+|.            |..|+.+    +|. . +|.+ |+|+  .   .++|.|++||+    +++.|.+ +|.+
T Consensus       378 p~~C~~~~~------------g~~c~~~----~C~-~-~C~n-G~C~--~---~~~C~C~~G~~G~~C~~~~C~~-~C~~  432 (463)
T 2wg3_C          378 PEECRATVQ------------PAQTLTS----ECS-R-LCRN-GYCT--P---TGKCCCSPGWEGDFCRTAKCEP-ACRH  432 (463)
T ss_dssp             CGGGCCCCC------------CCCCCCC----HHH-H-HCCS-EEEC--T---TSCEEECTTEESTTSCEECC-------
T ss_pred             cccCCCCCc------------CCCCccc----ccc-C-CCCC-CccC--C---CCeECCCCCcCCCcCCcCcCCC-CCCC
Confidence            367888888            9999754    677 3 5987 8999  4   35899999999    5678887 9999


Q ss_pred             CCeEecCCCce-eCCeeccCCCC
Q psy11059        110 DGVCVWMFDVT-IQVYKGRYCEL  131 (429)
Q Consensus       110 ~g~C~~~~~C~-~~g~~G~~C~~  131 (429)
                      +|+|+....|. .+||+|..|+.
T Consensus       433 ~g~C~~~~~C~C~~G~~G~~C~~  455 (463)
T 2wg3_C          433 GGVCVRPNKCLCKKGYLGPQCEQ  455 (463)
T ss_dssp             -----------------------
T ss_pred             CCEECCCCEEECCCCcccCCCCC
Confidence            99999876699 99999999985

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.44  E-value=3.8e-05  Score=52.74  Aligned_cols=46  Identities=20%  Similarity=0.443  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT   68 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~   68 (429)
                      .|||+....+|+.  .|+ ++.|+|+|.|++||+        ...+|..|+ +++  +|.
T Consensus         1 ~dEC~~~~~~C~~--~C~-nt~Gsy~C~C~~Gy~--------L~~d~~~C~-did--ec~   46 (55)
T 2jkh_L            1 RKLCSLDNGDCDQ--FCH-EEQNSVVCSCARGYT--------LADNGKACI-PTG--PYP   46 (55)
T ss_dssp             -CCTTTGGGGCSS--EEE-EETTEEEEECCTTEE--------ECTTSSCEE-ESS--SSC
T ss_pred             CccccCCCCCcCc--EeE-cCCCCeEEeCCCCCE--------ECCCCCeec-cCc--ccc
Confidence            3789655667974  899 999999999999998        334588896 777  665

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.40  E-value=0.00016  Score=55.00  Aligned_cols=72  Identities=15%  Similarity=0.344  Sum_probs=56.5

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCC---CCCeee
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGATCRPQLT---EQLYEC   90 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~---~~~~~C   90 (429)
                      ....|..++.|.....+...|.|.+||.|+          |..|..+.+ ..|+ ....|..+++|++...   .+...|
T Consensus         8 ~~~~C~~NA~C~r~~~g~e~C~C~~gy~gd----------g~~Cv~~~~-~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C   76 (99)
T 1ob1_C            8 VKKQCPQNSGCFRHLDEREECKCLLNYKQE----------GDKCVENPN-PTCNENNGGCDADAKCTEEDSGSNGKKITC   76 (99)
T ss_dssp             CSCCCCTTEEEECCTTSCCEEEECTTEEEE----------TTEEEECSC-CCSTTGGGGCCTTEEEECCSCSSSSCCCEE
T ss_pred             ccCCCCCCCCeEEcCCCCEEEEecCCeecC----------CCeEeeCCC-CChhhcCCCcCCCceeEecCCcccCCceEe
Confidence            456788999999457899999999999988          999985531 1787 2356999999994321   267999


Q ss_pred             eCCCCCc
Q psy11059         91 VCPPGYK   97 (429)
Q Consensus        91 ~C~~Gy~   97 (429)
                      +|.+||.
T Consensus        77 ~C~~g~~   83 (99)
T 1ob1_C           77 ECTKPDS   83 (99)
T ss_dssp             EECSTTC
T ss_pred             EeCCCCc
Confidence            9999987

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.40  E-value=3e-05  Score=75.69  Aligned_cols=109  Identities=20%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCCCC-CEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCC
Q psy11059         18 PCQNG-GKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGY   96 (429)
Q Consensus        18 ~C~~~-g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy   96 (429)
                      .|.++ ..|. ...+.++|.|+.+++            |..||.-..  ... ..++.++ ++.+......+.|+.-+++
T Consensus       298 ~CnGHas~C~-~~~g~~~C~C~~~tt------------G~~CE~C~p--gy~-~~P~~~g-t~~p~~~g~~~~C~pC~Cn  360 (426)
T 3zyj_B          298 KCNLHATVCV-YDNSKLTCECEHNTT------------GPDCGKCKK--NYQ-GRPWSPG-SYLPIPKGAANACIPSISS  360 (426)
T ss_dssp             CCSSSCSCEE-EETTEEEECCCTTEE------------SSSSCEECT--TCC-SSCCCCC-BCCSSSSCBCCCCCCCCC-
T ss_pred             cCCCchhhcC-CCCCCceeeCCCCCc------------CCCcccccc--ccc-cCcccCC-cccccCCCCCCcccCCCCC
Confidence            58777 4798 777889999999999            666653211  111 2344442 2211122334445322222


Q ss_pred             cccCCCC--CCCCCCCCeEecCCCce-eCCeeccCCCCCCCCCCCCCCCCCCCeEeeC
Q psy11059         97 KEIRDCT--SNPCLNDGVCVWMFDVT-IQVYKGRYCELPEIGDCSSNPCLNDGVCVDV  151 (429)
Q Consensus        97 ~~~~~C~--~~~C~~~g~C~~~~~C~-~~g~~G~~C~~~~i~~C~~~~C~~~g~C~~~  151 (429)
                      .....|.  ..||.++|+|++...|. ++||+|..|+.        .+|.++|+|+..
T Consensus       361 ~~g~~CD~~t~~C~ngg~C~~~~~C~C~~G~~G~~Ce~--------c~C~~~g~C~~~  410 (426)
T 3zyj_B          361 IGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEK--------LRCEEAGSCGSD  410 (426)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCcCccccCcccCCCCCCcCCCCCCcCCCCCcCCCCcC--------CCCCCCCcccCC
Confidence            2223343  35788888888776788 89999988873        246667777654

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.37  E-value=3.5e-05  Score=52.26  Aligned_cols=32  Identities=25%  Similarity=0.528  Sum_probs=27.7

Q ss_pred             CCCCCCCCEeccC----CCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         16 RNPCQNGGKCNED----ETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        16 ~~~C~~~g~C~~~----~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      .+||+|+|+|+ +    ..++|+|.|++||+            |..||.
T Consensus        13 ~~pC~NGGtC~-~~~~~~~~~y~C~C~~Gf~------------G~~Ce~   48 (52)
T 3ca7_A           13 AWYCLNDAHCF-AVKIADLPVYSCECAIGFM------------GQRCEY   48 (52)
T ss_dssp             HHTSCTTCEEE-EEEETTEEEEEEECCTTEE------------STTSCE
T ss_pred             CCcCCCCCEEe-cCccCCCCCEEEECCCCCc------------CCCCcc
Confidence            45999999999 5    45689999999999            999984

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.35  E-value=2.1e-05  Score=72.38  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      +++|||+...++|+.++.|+ |+.|+|.|.|++||.|+          |..|. +++
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~-Nt~Gsy~C~C~~Gy~Gn----------G~~C~-d~d   47 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECR-DYATGFCCRCVANYTGN----------GRQCV-AEG   47 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEE-ECSSCEEEEECTTEEEC----------SSSEE-ETT
T ss_pred             ccchhccCCCCCCCCCCEeE-cCCCCeEEEcCCCCCCC----------CCcCC-CCC
Confidence            46999976689999999999 99999999999999988          99996 666

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.27  E-value=0.00044  Score=52.93  Aligned_cols=78  Identities=19%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             cccCCCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCC-CC-CCCCCCCCCeEe
Q psy11059          3 FKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQI-CT-TAPPCLNGATCR   80 (429)
Q Consensus         3 ~~~~~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~-C~-~~~~C~~~g~C~   80 (429)
                      +-.+..-+-|  ....|..++.|....+|..+|.|.+||.++          |..|..+ +  + |. ...-|..++.|+
T Consensus         4 ~~~~~~~h~C--~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~d----------g~~Cv~~-N--p~C~~nNGGCd~nAeC~   68 (105)
T 1n1i_A            4 ASNMSSAHKC--IDTNVPENAACYRYLDGTEEWRCLLGFKEV----------GGKCVPA-S--ITCEENNGGCAPEAECT   68 (105)
T ss_dssp             ----CCTTSC--CSSCCCTTEEEEECTTSCEEEEECTTEEEC----------SSSEEEC-C--CCTTSGGGGSCTTSEEE
T ss_pred             hhcCCcCcEe--cCCCCCCCCCeEECCCCCEeEEEECCeecc----------CCEEEEC-C--cchhhcCCCcCCCcEeE
Confidence            3344555678  444799999999558899999999999988          9999755 6  6 76 355699999999


Q ss_pred             eCCC-CCCeeeeCCCCCc
Q psy11059         81 PQLT-EQLYECVCPPGYK   97 (429)
Q Consensus        81 ~~~~-~~~~~C~C~~Gy~   97 (429)
                        .+ +..-.|.|.++|.
T Consensus        69 --~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           69 --MDDKKEVECKCTKEGS   84 (105)
T ss_dssp             --ECTTSCEEEECCSTTC
T ss_pred             --ECCCCEEEeECCCCCC
Confidence              54 4788999999986

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.26  E-value=0.00017  Score=48.89  Aligned_cols=34  Identities=24%  Similarity=0.588  Sum_probs=28.2

Q ss_pred             CCCCCCCCC--------CCCCCCCCEeccCCCCceEEecCCCCcc
Q psy11059          7 SLSSPCDAQ--------RNPCQNGGKCNEDETGNYDCTCDALHTV   43 (429)
Q Consensus         7 ~~~~~C~~~--------~~~C~~~g~C~~~~~~~~~C~C~~g~~g   43 (429)
                      .++|||+..        .++|.  ++|+ ++.|+|+|.|++||++
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~-n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCH-NYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEE-EETTEEEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCC--CEeE-CCCCCeEEECCCCCeE
Confidence            368999643        37897  4999 9999999999999993

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.10  E-value=0.00019  Score=51.66  Aligned_cols=49  Identities=20%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCCCCCCEeccCCCC-ceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC
Q psy11059          6 ISLSSPCDAQRNPCQNGGKCNEDETG-NYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT   68 (429)
Q Consensus         6 ~~~~~~C~~~~~~C~~~g~C~~~~~~-~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~   68 (429)
                      ..++|||+.....|+.  .|+ ++.| +|+|.|++||.        ...+|..|. +++  +|.
T Consensus         2 ~~d~~eC~~~nggC~h--~C~-n~~g~s~~C~C~~Gy~--------L~~D~~tC~-d~d--ec~   51 (69)
T 1kli_L            2 KDDQLICVNENGGCEQ--YCS-DHTGTKRSCRCHEGYS--------LLADGVSCT-PTV--EYP   51 (69)
T ss_dssp             CSCCCCTTSGGGGCSS--EEE-EETTTEEEEECCTTEE--------ECTTSSCEE-ECS--SSC
T ss_pred             CcccccccCCCCCcCC--EeE-cCCCCCEEEeCCCCCe--------ECCCCCccc-Ccc--ccc
Confidence            3578999655567876  799 8888 89999999998        445689996 777  654

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.97  E-value=0.0005  Score=55.52  Aligned_cols=59  Identities=25%  Similarity=0.647  Sum_probs=44.4

Q ss_pred             CcCCCCccccCC--Cce-EEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        356 PCFNGATCQNKI--NGY-TCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       356 ~C~~~~~C~~~~--g~~-~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      ||.++++|++..  .+| +|.|++||+|..|+++++    .+|..+     ....|++.+..+++|..|+.
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~----~~C~~g-----~G~~YrG~~~~t~sG~~Cq~   63 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS----KTCYEG-----NGHFYRGKASTDTMGRPCLP   63 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS----CCSBCS-----SCTTCCSCCCBBTTSCBBCC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc----CCCccc-----ccccceeeccccccCCcccC
Confidence            689999998874  455 999999999999987654    234322     23468888888888888863

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.84  E-value=0.00029  Score=59.87  Aligned_cols=41  Identities=24%  Similarity=0.734  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE  429 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i~~C~  429 (429)
                      ++|.+.+|.++++|++..++|+|.|++||+|..||+.+ +|.
T Consensus       120 ~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~~-~c~  160 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVR-DDD  160 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEEC-C--
T ss_pred             CCCcCCCCCCCCEEecCCCCceEeCCCCCcCcccccCc-ccC
Confidence            34566677777788887778888888888888887543 663

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=96.76  E-value=0.0019  Score=62.31  Aligned_cols=95  Identities=24%  Similarity=0.534  Sum_probs=59.2

Q ss_pred             CCCCcE-eccCCCCCeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCcc----CCCCCCCCCCCCCCC-eeCC
Q psy11059        235 CQNGGK-CNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV----ELTGCVGPDTCLNGG-TCKP  308 (429)
Q Consensus       235 C~~~g~-C~~~~~~~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~~----~~~~C~~~~~C~~~~-~C~~  308 (429)
                      |..++. |..+....+.|.|..+|+|..|+             .|.+||.+..+..    ....|.. ..|..++ .|..
T Consensus       257 Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce-------------~C~~gy~~~p~~~g~~~~~~~C~~-C~Cn~~g~~C~~  322 (375)
T 4aqt_A          257 CNGHASECVKNEFDKLMCNCKHNTYGVDCE-------------KCLPFFNDRPWRRATAESASECLP-CDCNGRSQECYF  322 (375)
T ss_dssp             CTTSCSCEEECTTSCEEECCCTTEESTTSC-------------EECTTCCSSCCCCCCSSCCCCCCC-CCGGGSCSCEEE
T ss_pred             CCCCCcccCCCCCCCeeeeCcCCCcCCCcc-------------cCCCCCcCCCCCCCccCCCCCCCC-CcCcCCCCCccc
Confidence            334443 33455667889999999999998             4677887765421    1233443 4443322 2210


Q ss_pred             --ccccCCCCCeee-eCCCCccCCCCcccccCCCccCCCC
Q psy11059        309 --YLVDETQHRFNC-TCPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       309 --~~~~~~~~~~~C-~C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                        ....-...++.| .|+++|.|..|+  .|.+||+|...
T Consensus       323 d~~~~~c~~~~G~C~~C~~n~~G~~Ce--~C~~Gyyg~~~  360 (375)
T 4aqt_A          323 DPELYRSTGHGGHCTNCRDNTDGAKCE--RCRENFFRLGN  360 (375)
T ss_dssp             CHHHHHHSSCCEEECSCTTTEESTTSC--EECSSEECCTT
T ss_pred             ccccCccCCCCCCCCCCCCCCcCCCCC--CCCcCcccCcC
Confidence              000012456789 599999999999  68999998753

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.73  E-value=0.00092  Score=53.95  Aligned_cols=33  Identities=36%  Similarity=0.736  Sum_probs=28.2

Q ss_pred             CCCCCCEeccCCC--Cce-EEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         18 PCQNGGKCNEDET--GNY-DCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        18 ~C~~~g~C~~~~~--~~~-~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ||+|+|+|+ +..  .+| +|.|++||+            |..|+++++
T Consensus         2 pC~nggtC~-~~~~~~~~~~C~Cp~g~~------------G~~Ce~~~~   37 (122)
T 2fd6_A            2 DCLNGGTCV-SNKYFSNIHWCNCPKKFG------------GQHCEIDKS   37 (122)
T ss_dssp             CCCSSCEEE-ECTTTTTCEEEECCTTEE------------STTSCEESS
T ss_pred             CCCCcCCcC-CCcccCCCCCccCCCCCC------------CccccccCc
Confidence            899999998 663  556 999999999            999997764

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.68  E-value=0.00043  Score=47.87  Aligned_cols=30  Identities=37%  Similarity=0.969  Sum_probs=20.2

Q ss_pred             CCCCCCEEc--c--CCCCeeeeCCCCCCCCCCCC
Q psy11059        394 PCLHGATCI--D--EVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       394 ~C~~~~~C~--~--~~~~~~C~C~~g~~G~~C~~  423 (429)
                      +|.++|+|+  .  ....|.|.|++||+|.+||.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            677777776  2  33456777777777777764

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.53  E-value=0.0014  Score=44.29  Aligned_cols=32  Identities=28%  Similarity=0.751  Sum_probs=24.5

Q ss_pred             CCCCCCCC----------CCCCCCCEEccCCCCeeeeCCCCCCC
Q psy11059        385 ININECES----------SPCLHGATCIDEVATFSCVCPKGLTG  418 (429)
Q Consensus       385 ~~~~~C~~----------~~C~~~~~C~~~~~~~~C~C~~g~~G  418 (429)
                      ++|++|..          .+|.  ++|++++++|+|.|++||++
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeE
Confidence            36677764          4675  38999999999999999874

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.51  E-value=0.00079  Score=46.54  Aligned_cols=31  Identities=26%  Similarity=0.598  Sum_probs=26.4

Q ss_pred             CCCCCCEecc-C--CCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         18 PCQNGGKCNE-D--ETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        18 ~C~~~g~C~~-~--~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ||.|+|+|+. +  ..+.|.|.|++||+            |.+||.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~------------G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFM------------GQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEE------------SSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCc------------cCCCcc
Confidence            8999999982 1  45679999999999            999985

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.43  E-value=0.00091  Score=68.15  Aligned_cols=39  Identities=31%  Similarity=0.761  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCCCCEeccC-CCCceEEecC-CCCcccccccccCcCCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNED-ETGNYDCTCD-ALHTVCCVGLANQTLGSIHCETPI   62 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~-~~~~~~C~C~-~g~~g~~~~~~~~~~~G~~C~~~~   62 (429)
                      +|+|  .++||+|+|+|+ + ..++|+|.|. +||+            |..||...
T Consensus         2 ~d~C--~~~PC~ngG~C~-~~~~~~y~C~C~~~G~~------------G~~Ce~~~   42 (553)
T 1q4g_A            2 VNPC--CYYPCQHQGICV-RFGLDRYQCDCTRTGYS------------GPNCTIPE   42 (553)
T ss_dssp             CCGG--GGCCCCTTCEEE-EETTTEEEEECTTSSEE------------TTTTCEEC
T ss_pred             CCcC--CCCCCCCCCCcC-CCCCCceEeeCCCCCcC------------CCCCCCCc
Confidence            5899  799999999999 8 8899999999 9999            99998754

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.40  E-value=0.00079  Score=57.13  Aligned_cols=37  Identities=27%  Similarity=0.576  Sum_probs=31.1

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT   68 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~   68 (429)
                      ++||+++|+|+ +..++|+|+|++||+            |..||+. +  +|+
T Consensus       124 ~~~C~~~g~C~-~~~~~~~c~C~~g~~------------G~~Ce~~-~--~c~  160 (162)
T 1g1s_A          124 DMSCSKQGECL-ETIGNYTCSCYPGFY------------GPECEYV-R--DDD  160 (162)
T ss_dssp             TTGGGGSEEEE-ECSSSEEEEECTTEE------------STTSCEE-C--C--
T ss_pred             CCCCCCCCEEe-cCCCCceEeCCCCCc------------CcccccC-c--ccC
Confidence            46899999999 999999999999999            9999854 4  676

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.37  E-value=0.0011  Score=45.37  Aligned_cols=38  Identities=32%  Similarity=0.736  Sum_probs=21.4

Q ss_pred             CcCCCC--CcCCCCccccCCCceEEecCCCCC----CCCccCCCCCC
Q psy11059        350 DECLSN--PCFNGATCQNKINGYTCVCAPGYS----GKECSININEC  390 (429)
Q Consensus       350 ~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C  390 (429)
                      |||...  +|.  ..|++++|+|+|.|++||.    |..|. ++++|
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeec-cCccc
Confidence            455532  343  3666777777777777764    44553 55443

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=96.34  E-value=0.0061  Score=59.17  Aligned_cols=82  Identities=24%  Similarity=0.511  Sum_probs=56.8

Q ss_pred             CeeEeCCCCCcCCCCCCCccccCCCCeeeeCCCCCCCCCCc----cCCCCCCCCCCCCCCCe-eC--Cc------cc---
Q psy11059        248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCS----VELTGCVGPDTCLNGGT-CK--PY------LV---  311 (429)
Q Consensus       248 ~~~C~C~~g~~G~~C~~~~C~~~~~~~~C~C~~G~~g~~c~----~~~~~C~~~~~C~~~~~-C~--~~------~~---  311 (429)
                      ...|.|..+++|..|+             .|.+||.|....    .....|.. ..|..++. |.  +.      ..   
T Consensus       285 ~g~C~C~hnT~G~~CE-------------rC~pGy~g~p~~~at~~~~~~C~p-C~Cnghs~~C~~d~~~~~~~~s~~~~  350 (403)
T 2y38_A          285 RLQCACQHNTCGGSCD-------------RCCPGFNQQPWKPATTDSANECQS-CNCHGHAYDCYYDPEVDRREASQNQD  350 (403)
T ss_dssp             CEEECCCTTEESSSCC-------------EECTTCCSSCCCCCCSSCCCCCCC-CCCTTSCSCEEECHHHHHTTCCCCTT
T ss_pred             ceEeECcCcCcCCCCC-------------CCCccccCCcccccccCCCccccc-cccCCCCcccccCccccccccccccc
Confidence            3579999999999998             589999876421    12345765 66765543 51  00      00   


Q ss_pred             cCCCCCeeee-CCCCccCCCCcccccCCCccCCCC
Q psy11059        312 DETQHRFNCT-CPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       312 ~~~~~~~~C~-C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                      ....+++.|. |+.++.|..|+  .|.+||+|..-
T Consensus       351 ~~~~~~G~C~~C~~nt~G~~CE--rC~~GYyg~p~  383 (403)
T 2y38_A          351 NVYQGGGVCLDCQHHTTGINCE--RCLPGFFRAPD  383 (403)
T ss_dssp             SCSCCCEEESSCCSSEESTTSC--EECTTCEECTT
T ss_pred             ccCCCCCCCCCCcCcCcCCCCC--cCCCCccCCCC
Confidence            0024578995 99999999999  68899998754

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.33  E-value=0.00088  Score=44.99  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         14 AQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        14 ~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ....+|+.  .|+ ++.|+|+|.|++||+        ...+|..|+ +++
T Consensus         3 ~~ng~C~~--~C~-n~~gs~~C~C~~Gy~--------L~~d~~tC~-did   40 (51)
T 1kig_L            3 LDNGGCDQ--FCR-EERSEVRCSCAHGYV--------LGDDSKSCV-STE   40 (51)
T ss_dssp             TTTTSSSS--CCC-EETTEECCCCCTTEE--------ECTTSSCEE-ECS
T ss_pred             CCCCCcCC--EeE-cCCCCeEEeCCCCcE--------ECCCCCccc-cCC
Confidence            34556765  699 999999999999998        334588996 777

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.31  E-value=0.0013  Score=67.09  Aligned_cols=38  Identities=39%  Similarity=0.948  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCCCCEeccC-CCCceEEecC-CCCcccccccccCcCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNED-ETGNYDCTCD-ALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~-~~~~~~C~C~-~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      +|+|  .++||+|+|+|+ + ..++|.|.|+ +||+            |..|+.+
T Consensus         1 vd~C--~s~PC~ngG~C~-~~~~~~y~C~C~~~G~~------------G~~Ce~~   40 (587)
T 3nt1_A            1 ANPC--CSNPCQNRGECM-STGFDQYKCDCTRTGFY------------GENCTTP   40 (587)
T ss_dssp             CCTT--TTCCCCTTCEEE-EEETTEEEEECTTSSEE------------TTTTCEE
T ss_pred             CCCC--CCCCCCCCCEee-CCCCCCeEEecCCCCcc------------CCCCCCc
Confidence            5899  799999999999 5 4589999999 9999            9999874

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.31  E-value=0.0023  Score=46.24  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             CCCCCCCC-CCCCCCCCCeEeeCCCCCCeeee-CCCCCc
Q psy11059         61 PISNQICT-TAPPCLNGATCRPQLTEQLYECV-CPPGYK   97 (429)
Q Consensus        61 ~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~-C~~Gy~   97 (429)
                      +||  ||. ..++|.++++|+  ++.++|+|. +..||.
T Consensus         2 Did--EC~~~~~~C~~~~~C~--Nt~Gsy~C~~~~~g~~   36 (71)
T 2kl7_A            2 DVN--ECLTIPEACKGEMKCI--NHYGGYLCLPRSAAVI   36 (71)
T ss_dssp             CSC--CTTCCCCSCTTEEEEE--ETTCCEEEEETTSCCC
T ss_pred             ccc--cccCCCCCCCCCCEeE--CCCCCeEecccCCccc
Confidence            677  897 457899889999  999999997 567887

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=95.91  E-value=0.0078  Score=45.75  Aligned_cols=70  Identities=29%  Similarity=0.626  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCCCeeCCccccCCCCCeeeeCCCCccCCCCcccccCCCccCCCCccCC-CcCCCCC--cCCCCccccCC--
Q psy11059        293 GCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDF-DECLSNP--CFNGATCQNKI--  367 (429)
Q Consensus       293 ~C~~~~~C~~~~~C~~~~~~~~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~~~i-~~C~~~~--C~~~~~C~~~~--  367 (429)
                      .|.. ..|..++.|    +....+...|+|.+||.++            |..|..+. ..|..+.  |..+|.|+...  
T Consensus         6 ~C~~-~~C~~NA~C----~r~~~g~e~C~C~~gy~gd------------g~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~   68 (99)
T 1ob1_C            6 QCVK-KQCPQNSGC----FRHLDEREECKCLLNYKQE------------GDKCVENPNPTCNENNGGCDADAKCTEEDSG   68 (99)
T ss_dssp             CCCS-CCCCTTEEE----ECCTTSCCEEEECTTEEEE------------TTEEEECSCCCSTTGGGGCCTTEEEECCSCS
T ss_pred             Eecc-CCCCCCCCe----EEcCCCCEEEEecCCeecC------------CCeEeeCCCCChhhcCCCcCCCceeEecCCc
Confidence            3544 667788899    5557788999999999875            55565332 4676543  88889998764  


Q ss_pred             ---CceEEecCCCCC
Q psy11059        368 ---NGYTCVCAPGYS  379 (429)
Q Consensus       368 ---g~~~C~C~~G~~  379 (429)
                         +...|.|.+||.
T Consensus        69 ~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           69 SNGKKITCECTKPDS   83 (99)
T ss_dssp             SSSCCCEEEECSTTC
T ss_pred             ccCCceEeEeCCCCc
Confidence               567899998875

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.75  E-value=0.003  Score=42.72  Aligned_cols=43  Identities=23%  Similarity=0.611  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCEeccCCCC-ceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC
Q psy11059         12 CDAQRNPCQNGGKCNEDETG-NYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT   68 (429)
Q Consensus        12 C~~~~~~C~~~g~C~~~~~~-~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~   68 (429)
                      |+.....|+.  .|+ ++.+ +|+|.|++||+        ...+|..|+ +++  +|.
T Consensus         2 C~~~nggC~~--~C~-n~~ggs~~C~C~~Gy~--------L~~Dg~tC~-d~d--ec~   45 (53)
T 2bz6_L            2 CVNENGGCEQ--YCS-DHTGTKRSCRCHEGYS--------LLADGVSCT-PTV--EYP   45 (53)
T ss_dssp             TTSGGGGCSS--EEE-EETTTEEEEECCTTEE--------ECTTSSCEE-ECS--SSC
T ss_pred             CcCCCCCcCC--EeE-cCCCCCEEeeCCCCCE--------ECCCCCccc-CCc--ccc
Confidence            4333445755  699 8888 89999999998        345689996 777  664

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=95.71  E-value=0.0038  Score=44.73  Aligned_cols=41  Identities=29%  Similarity=0.642  Sum_probs=26.3

Q ss_pred             cCCCcCCCCC--cCCCCccccCCC-ceEEecCCCCC----CCCccCCCCCC
Q psy11059        347 VDFDECLSNP--CFNGATCQNKIN-GYTCVCAPGYS----GKECSININEC  390 (429)
Q Consensus       347 ~~i~~C~~~~--C~~~~~C~~~~g-~~~C~C~~G~~----G~~C~~~~~~C  390 (429)
                      +++++|....  |.  ..|+++++ +|+|.|++||.    |+.|. +++++
T Consensus         3 ~d~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            3 DDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             SCCCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             cccccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCCccc-Ccccc
Confidence            4677776432  43  36777777 68888888874    55663 56554

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=95.50  E-value=0.0072  Score=41.79  Aligned_cols=40  Identities=20%  Similarity=0.587  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCEeccCCC-CceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         12 CDAQRNPCQNGGKCNEDET-GNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        12 C~~~~~~C~~~g~C~~~~~-~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      |+.....|+.  .|+ +.. |+|+|.|++||.        ...+|..|+ +++
T Consensus         2 C~~~nggC~~--~C~-n~~~gs~~C~C~~Gy~--------L~~D~~tC~-d~~   42 (59)
T 2wph_E            2 CNIKNGRCEQ--FCK-NSADNKVVCSCTEGYR--------LAENQKSCE-PAV   42 (59)
T ss_dssp             TTTGGGGCSS--EEE-ECSTTCEEEECCTTEE--------ECTTSSCEE-ESS
T ss_pred             CcCCCCCcCC--EeE-eCCCCCEEeeCCCCcE--------ECCCCCccc-CCC
Confidence            4333445655  799 888 699999999998        445688896 555

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=95.23  E-value=0.004  Score=52.32  Aligned_cols=38  Identities=24%  Similarity=0.840  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI  425 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i  425 (429)
                      ++|.+.||.+++.|.+....|.|.|.+||+|++||++|
T Consensus       120 ~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~~  157 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV  157 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCCCEeecCCCCeeEECCCCccCccccccC
Confidence            34566778888888888888889999999999988765

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.09  E-value=0.0042  Score=57.12  Aligned_cols=42  Identities=24%  Similarity=0.733  Sum_probs=31.6

Q ss_pred             cCCCcCC--CCCcCCCCccccCCCceEEecCCCCC--CCCccCCCCC
Q psy11059        347 VDFDECL--SNPCFNGATCQNKINGYTCVCAPGYS--GKECSININE  389 (429)
Q Consensus       347 ~~i~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~--G~~C~~~~~~  389 (429)
                      .++|||.  ..+|..++.|+|+.|+|.|.|++||.  |..|. ++|+
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~-d~d~   48 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV-AEGS   48 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE-ETTC
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC-CCCC
Confidence            3788997  45799999999999999999999998  66774 5544

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.05  E-value=0.014  Score=48.39  Aligned_cols=58  Identities=26%  Similarity=0.682  Sum_probs=38.3

Q ss_pred             CcCCCCccccC--CCce-EEecCCCCCCCCccCCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCC
Q psy11059        356 PCFNGATCQNK--INGY-TCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       356 ~C~~~~~C~~~--~g~~-~C~C~~G~~G~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~  422 (429)
                      ||.++++|+..  ...+ +|.|++||.|+.|++++++    .|..+     ....|+......++|..|+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~----~C~~g-----~G~~YrG~~s~T~sG~~Cq   74 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK----TCYEG-----NGHFYRGKASTDTMGRPCL   74 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSC----CEECT-----TCTTCCSCCCBBTTSCBCC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccccc----cCCCC-----CccccccceecCCcCCccc
Confidence            79999999765  2455 8999999999999876542    22211     1224555555555666664

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.04  E-value=0.0072  Score=61.54  Aligned_cols=37  Identities=35%  Similarity=0.967  Sum_probs=23.7

Q ss_pred             CCcCCCCCcCCCCcccc-CCCceEEecC-CCCCCCCccC
Q psy11059        349 FDECLSNPCFNGATCQN-KINGYTCVCA-PGYSGKECSI  385 (429)
Q Consensus       349 i~~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~G~~C~~  385 (429)
                      +++|.++||.++|+|++ ..++|+|.|+ +||+|..|+.
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            35566666666666666 5666666666 6666666653

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=94.99  E-value=0.008  Score=43.84  Aligned_cols=32  Identities=34%  Similarity=0.839  Sum_probs=22.8

Q ss_pred             CCCCCCCCEEc--cCCCCeeeeCCCCCCCCCCCCC
Q psy11059        392 SSPCLHGATCI--DEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       392 ~~~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      .+.|.++ +|+  ...+.+.|.|.+||+|.+|+..
T Consensus        45 ~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           45 KDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             TTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             cCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence            4667775 784  3345678888888888888753

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=94.86  E-value=0.01  Score=39.50  Aligned_cols=31  Identities=35%  Similarity=0.713  Sum_probs=21.8

Q ss_pred             CCCCCCCEEc--cCCCCeeeeCCCCCCCCCCCCC
Q psy11059        393 SPCLHGATCI--DEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       393 ~~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      +.|.+ |+|.  ...+.+.|+|++||+|.+||..
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            45766 5774  4455678888888888888753

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=94.85  E-value=0.017  Score=47.92  Aligned_cols=33  Identities=36%  Similarity=0.713  Sum_probs=27.8

Q ss_pred             CCCCCCEeccCC--CCce-EEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         18 PCQNGGKCNEDE--TGNY-DCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        18 ~C~~~g~C~~~~--~~~~-~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ||+|+|+|+ ..  ...+ +|.|++||.            |..|+++++
T Consensus        14 pC~NGGtC~-~~~~~s~~~~C~Cp~g~~------------G~~Cei~~~   49 (145)
T 2i9a_A           14 DCLNGGTCV-SNKYFSNIHWCNCPKKFG------------GQHCEIDKS   49 (145)
T ss_dssp             CCCTTCEEE-ECSSSTTCEEEECCTTEE------------STTSCEESS
T ss_pred             CCCCCCCcC-CCccccCCccccCCCCCC------------CCceecccc
Confidence            899999998 44  3455 899999999            999997765

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=94.78  E-value=0.03  Score=37.10  Aligned_cols=30  Identities=23%  Similarity=0.770  Sum_probs=22.7

Q ss_pred             CCCCCCCEEc--cCCCCeeeeCCCCCCCCCCCC
Q psy11059        393 SPCLHGATCI--DEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       393 ~~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      +.|.+ |+|.  ...+.+.|+|++||+|.+|+.
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            45776 4886  455678899999999999874

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=94.54  E-value=0.03  Score=37.07  Aligned_cols=31  Identities=26%  Similarity=0.643  Sum_probs=22.8

Q ss_pred             CCCCCCcEecc-CCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCNE-DETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|.++ +|.. .....+.|.|++||+|..|+.
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH   45 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence            567775 8843 344668888888888888875

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=94.47  E-value=0.012  Score=42.81  Aligned_cols=40  Identities=23%  Similarity=0.538  Sum_probs=28.1

Q ss_pred             CCCCCCC-CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059          8 LSSPCDA-QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus         8 ~~~~C~~-~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ..++|.. ..+.|.|+ +|+. ...+.+.|.|.+||+            |..|+.
T Consensus        36 ~~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYt------------G~RCE~   77 (79)
T 1xdt_R           36 KRDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYH------------GERCHG   77 (79)
T ss_dssp             ---CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEE------------STTCCE
T ss_pred             cCCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcc------------cccccc
Confidence            3567831 26899995 9952 334678999999999            998874

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=94.47  E-value=0.058  Score=41.27  Aligned_cols=71  Identities=24%  Similarity=0.555  Sum_probs=53.3

Q ss_pred             cCCCCCcCCCCcccc-CCCceEEecCCCCC--CCCccCCCCC-CCCC--CCCCCCEEccCC-CCeeeeCCCCCC-----C
Q psy11059        351 ECLSNPCFNGATCQN-KINGYTCVCAPGYS--GKECSININE-CESS--PCLHGATCIDEV-ATFSCVCPKGLT-----G  418 (429)
Q Consensus       351 ~C~~~~C~~~~~C~~-~~g~~~C~C~~G~~--G~~C~~~~~~-C~~~--~C~~~~~C~~~~-~~~~C~C~~g~~-----G  418 (429)
                      .|....|..++.|.. .+|..+|+|..||.  |..|..+ ++ |..+  -|...|+|+.+. ....|.|.++|+     |
T Consensus        12 ~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~~~~~G   90 (105)
T 1n1i_A           12 KCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEG   90 (105)
T ss_dssp             SCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCCEEGGG
T ss_pred             EecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCccccce
Confidence            344445778889987 67888999999997  5577544 66 6543  499999998774 688999999854     6


Q ss_pred             CCCC
Q psy11059        419 RLCE  422 (429)
Q Consensus       419 ~~C~  422 (429)
                      ..|.
T Consensus        91 vfC~   94 (105)
T 1n1i_A           91 VFCS   94 (105)
T ss_dssp             TEEC
T ss_pred             EEEC
Confidence            6665

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=94.46  E-value=0.016  Score=55.85  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=25.4

Q ss_pred             CCCCeeeeCCCCccCCCCcccccCCCccCCCC
Q psy11059        314 TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       314 ~~~~~~C~C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                      ....+.|.|+++|.|..|+  .|.+||++..+
T Consensus       268 ~~~~~~C~C~~nt~G~~Ce--~C~~gy~~~p~  297 (375)
T 4aqt_A          268 EFDKLMCNCKHNTYGVDCE--KCLPFFNDRPW  297 (375)
T ss_dssp             TTSCEEECCCTTEESTTSC--EECTTCCSSCC
T ss_pred             CCCCeeeeCcCCCcCCCcc--cCCCCCcCCCC
Confidence            5567889999999999999  67889988754

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=94.43  E-value=0.04  Score=36.49  Aligned_cols=31  Identities=26%  Similarity=0.684  Sum_probs=23.1

Q ss_pred             CCCCCCcEec-cCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCN-EDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~-~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|.+ |+|. ....+.+.|.|+.||+|..|+.
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            46776 5884 3556678899999999988874

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=94.29  E-value=0.017  Score=58.97  Aligned_cols=37  Identities=35%  Similarity=0.965  Sum_probs=29.9

Q ss_pred             CCcCCCCCcCCCCcccc-CCCceEEecC-CCCCCCCccC
Q psy11059        349 FDECLSNPCFNGATCQN-KINGYTCVCA-PGYSGKECSI  385 (429)
Q Consensus       349 i~~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~G~~C~~  385 (429)
                      +++|.++||.++|+|++ ..++|.|.|+ +||+|..|+.
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            46788888888888885 4578888888 8888888864

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=94.26  E-value=0.011  Score=39.53  Aligned_cols=28  Identities=29%  Similarity=0.727  Sum_probs=18.3

Q ss_pred             ccccCCCceEEecCCCCC----CCCccCCCCCC
Q psy11059        362 TCQNKINGYTCVCAPGYS----GKECSININEC  390 (429)
Q Consensus       362 ~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C  390 (429)
                      .|++++++|+|.|++||.    |..|. +++++
T Consensus        11 ~C~n~~gs~~C~C~~Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L           11 FCREERSEVRCSCAHGYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             CCCEETTEECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred             EeEcCCCCeEEeCCCCcEECCCCCccc-cCCcc
Confidence            577777777777777774    45663 55553

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=93.75  E-value=0.021  Score=38.41  Aligned_cols=17  Identities=29%  Similarity=0.884  Sum_probs=8.1

Q ss_pred             ccccCCC-ceEEecCCCC
Q psy11059        362 TCQNKIN-GYTCVCAPGY  378 (429)
Q Consensus       362 ~C~~~~g-~~~C~C~~G~  378 (429)
                      .|+++++ +|+|.|++||
T Consensus        12 ~C~n~~ggs~~C~C~~Gy   29 (53)
T 2bz6_L           12 YCSDHTGTKRSCRCHEGY   29 (53)
T ss_dssp             EEEEETTTEEEEECCTTE
T ss_pred             EeEcCCCCCEEeeCCCCC
Confidence            3444444 3455555554

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=93.54  E-value=0.042  Score=36.40  Aligned_cols=38  Identities=26%  Similarity=0.596  Sum_probs=29.0

Q ss_pred             CCCCC-CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         10 SPCDA-QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        10 ~~C~~-~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      .+|.. ..+.|.| |+|.. ...+.+.|.|++||+            |..||.
T Consensus         6 ~~C~~~~~~yC~n-G~C~~~~~~~~~~C~C~~gy~------------G~RCe~   45 (50)
T 1iox_A            6 SRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGYI------------GARCER   45 (50)
T ss_dssp             EECCGGGTTSCTT-CCEEEETTTTEEEECCCTTEE------------TTTTCE
T ss_pred             cccChhhcCcccC-CEEEeEcCCCCeEEECCCCcc------------cCCCCe
Confidence            35532 3578999 89952 556789999999999            999984

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=93.38  E-value=0.021  Score=47.80  Aligned_cols=38  Identities=37%  Similarity=0.943  Sum_probs=33.6

Q ss_pred             CcCCCCCcCCCCccccCCCceEEecCCCCCCCCccCCC
Q psy11059        350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI  387 (429)
Q Consensus       350 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~  387 (429)
                      .+|...||.+++.|.+....|.|.|.+||+|..|+++|
T Consensus       120 ~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~~  157 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV  157 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCCCEeecCCCCeeEECCCCccCccccccC
Confidence            56777889999999999999999999999999997543

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=93.09  E-value=0.067  Score=35.37  Aligned_cols=33  Identities=21%  Similarity=0.523  Sum_probs=26.4

Q ss_pred             CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         15 QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        15 ~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ..+.|.|+ +|.. ...+.+.|.|++||+            |..|+.
T Consensus        12 ~~~yC~nG-~C~~~~~~~~~~C~C~~gy~------------G~RCe~   45 (50)
T 3e50_C           12 HTQFCFHG-TCRFLVQEDKPACVCHSGYV------------GARCEH   45 (50)
T ss_pred             hcCcccCC-EEeeccCCCCeEEECCCCCc------------ccCCCc
Confidence            35689986 9983 234789999999999            999974

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=92.65  E-value=0.064  Score=52.51  Aligned_cols=38  Identities=29%  Similarity=0.808  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCC-CCcccccccccCcCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDA-LHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~-g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      .++|  ..+||.|+|+|+ +..++|.|.|+. ||.            |..|+.+
T Consensus       185 ~~~C--~~~pC~n~g~C~-~~~~~~~C~C~~~~~~------------G~~C~~~  223 (410)
T 3asi_A          185 STTC--QEDSCSNQGVCL-QQWDGFSCDCSMTSFS------------GPLCNDP  223 (410)
T ss_dssp             SSCC--CTTSSSTTCEEE-ECSSSEEEECTTTSEE------------STTSCEE
T ss_pred             CCCc--ccccCCCCCEec-CCCCCceEeccCCccc------------CCCCCCC
Confidence            4789  789999999999 889999999996 999            9999854

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=92.30  E-value=0.086  Score=51.58  Aligned_cols=38  Identities=26%  Similarity=0.783  Sum_probs=25.2

Q ss_pred             CCCCCCCCCCCCCEEccCCCCeeeeCCC-CCCCCCCCCC
Q psy11059        387 INECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETN  424 (429)
Q Consensus       387 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~-g~~G~~C~~~  424 (429)
                      .+.|...||.++++|+....+|.|.|+. +|+|..|+.+
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~  223 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP  223 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEE
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCCC
Confidence            4556666777777776666667777764 6777777643

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.09  E-value=0.032  Score=47.52  Aligned_cols=45  Identities=31%  Similarity=0.822  Sum_probs=31.2

Q ss_pred             CCCCCCCccCCCCCCCCCC-----CCCCCEEccCCCCeeeeCCCCCC----CCCCC
Q psy11059        376 PGYSGKECSININECESSP-----CLHGATCIDEVATFSCVCPKGLT----GRLCE  422 (429)
Q Consensus       376 ~G~~G~~C~~~~~~C~~~~-----C~~~~~C~~~~~~~~C~C~~g~~----G~~C~  422 (429)
                      .||.+.....++++|...+     |.+  .|+++.++|+|.|++||+    |..|.
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccc
Confidence            4555555445677886543     655  688888888899988887    55554

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=91.43  E-value=0.16  Score=43.42  Aligned_cols=28  Identities=32%  Similarity=0.774  Sum_probs=22.7

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      .+|.++|.| .   +-.+|.|++||+|..|+.
T Consensus       153 ~~C~ngG~C-v---~P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          153 GGCRNGGFC-N---ERRICECPDGFHGPHCEG  180 (188)
T ss_dssp             TCCCTTCEE-C---TTSCEECCTTCBTTTTCB
T ss_pred             CCCCCCCEe-C---CCCcccCcCCCCCCCCcC
Confidence            379999999 2   345799999999999874

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.26  E-value=0.045  Score=46.51  Aligned_cols=44  Identities=36%  Similarity=0.924  Sum_probs=33.1

Q ss_pred             CCccCCCCccCCCcCCCCC-----cCCCCccccCCCceEEecCCCCC----CCCc
Q psy11059        338 PGFAGDHCDVDFDECLSNP-----CFNGATCQNKINGYTCVCAPGYS----GKEC  383 (429)
Q Consensus       338 ~g~~g~~C~~~i~~C~~~~-----C~~~~~C~~~~g~~~C~C~~G~~----G~~C  383 (429)
                      .||.+.....++++|...+     |..  .|++..++|.|.|++||+    +..|
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C  165 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTC  165 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCcc
Confidence            3555555555788997644     654  799999999999999997    4555

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=90.89  E-value=0.16  Score=43.41  Aligned_cols=32  Identities=38%  Similarity=0.951  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       389 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      .|. .+|.++|.|+..   .+|.|++||+|..|++.
T Consensus       150 ~C~-~~C~ngG~Cv~P---~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          150 ECP-GGCRNGGFCNER---RICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCT-TCCCTTCEECTT---SCEECCTTCBTTTTCBC
T ss_pred             ccC-CCCCCCCEeCCC---CcccCcCCCCCCCCcCC
Confidence            444 579999999653   37999999999999864

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=89.61  E-value=0.2  Score=56.25  Aligned_cols=45  Identities=24%  Similarity=0.686  Sum_probs=37.9

Q ss_pred             ccCCCCCCCCCCCCCCCEEccCCCCeeeeCC-CCCCCCCCCCCCCC
Q psy11059        383 CSININECESSPCLHGATCIDEVATFSCVCP-KGLTGRLCETNIDD  427 (429)
Q Consensus       383 C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~-~g~~G~~C~~~i~~  427 (429)
                      |....+.|...||.++|+|+....+|.|.|+ ++|+|..|+.++.+
T Consensus      1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~~~ 1058 (1245)
T 3qcw_A         1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 1058 (1245)
T ss_dssp             SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCCCE
T ss_pred             eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCCce
Confidence            4333467888999999999999899999999 69999999987643

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=89.21  E-value=0.46  Score=46.03  Aligned_cols=66  Identities=30%  Similarity=0.710  Sum_probs=42.5

Q ss_pred             CeeeeCCCCccCCCCcccccCCCccCCCCc----cCCCcCCCCCcCCCC-cccc----------------CCCceEEe-c
Q psy11059        317 RFNCTCPSGYHGKICEKCFCRPGFAGDHCD----VDFDECLSNPCFNGA-TCQN----------------KINGYTCV-C  374 (429)
Q Consensus       317 ~~~C~C~~G~~G~~C~~C~C~~g~~g~~C~----~~i~~C~~~~C~~~~-~C~~----------------~~g~~~C~-C  374 (429)
                      ...|.|+.++.|..|+  .|.+||+|..-.    ...+.|..-+|.+++ .|..                ..++.+|. |
T Consensus       285 ~g~C~C~hnT~G~~CE--rC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C  362 (403)
T 2y38_A          285 RLQCACQHNTCGGSCD--RCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDC  362 (403)
T ss_dssp             CEEECCCTTEESSSCC--EECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSC
T ss_pred             ceEeECcCcCcCCCCC--CCCccccCCcccccccCCCccccccccCCCCcccccCcccccccccccccccCCCCCCCCCC
Confidence            3579999999999999  789999986311    123456554565544 3521                12345774 7


Q ss_pred             CCCCCCCCcc
Q psy11059        375 APGYSGKECS  384 (429)
Q Consensus       375 ~~G~~G~~C~  384 (429)
                      +.+++|..|+
T Consensus       363 ~~nt~G~~CE  372 (403)
T 2y38_A          363 QHHTTGINCE  372 (403)
T ss_dssp             CSSEESTTSC
T ss_pred             cCcCcCCCCC
Confidence            7777777664

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=88.03  E-value=0.27  Score=55.20  Aligned_cols=39  Identities=28%  Similarity=0.760  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecC-CCCcccccccccCcCCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCD-ALHTVCCVGLANQTLGSIHCETPI   62 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~~~~~~~~~G~~C~~~~   62 (429)
                      .+.|  ..+||.|+|+|+ ....+|.|.|+ +||+            |..|+.+.
T Consensus      1017 ~~~C--~~~pC~ngG~C~-~~~~~~~C~C~~~g~~------------G~~C~~~~ 1056 (1245)
T 3qcw_A         1017 STTC--QEDSCSNQGVCL-QQWDGFSCDCSMTSFS------------GPLCNDPG 1056 (1245)
T ss_dssp             CCCC--CTTSSSSSCEEE-EETTEEEEECTTSSCB------------STTSCBCC
T ss_pred             cCce--ECCcCCCCCEeC-CCCCCCEEECCCCCCC------------CCCccCCC
Confidence            3689  789999999999 88889999999 6999            99998654

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=86.56  E-value=0.34  Score=44.62  Aligned_cols=59  Identities=27%  Similarity=0.720  Sum_probs=39.9

Q ss_pred             cCCCCccccCCCceEEecCCCCCCCCccCCCC---------CCCCC----CCCCCCEEccCCCCeeeeCCCCC------C
Q psy11059        357 CFNGATCQNKINGYTCVCAPGYSGKECSININ---------ECESS----PCLHGATCIDEVATFSCVCPKGL------T  417 (429)
Q Consensus       357 C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~---------~C~~~----~C~~~~~C~~~~~~~~C~C~~g~------~  417 (429)
                      |..+|++.-.    .|+|.+||+|..|+-..+         .|...    .|..+|+|+-.    +|+|.++|      .
T Consensus       198 C~g~G~~~CG----~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG----~C~C~~~~~~~~~~~  269 (280)
T 2p26_A          198 CHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIY  269 (280)
T ss_dssp             GGGSEEEETT----EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT----EEEECCCSSTTCEEE
T ss_pred             cCCCCeECCC----ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC----eeECcCCCCCCeeEe
Confidence            5555555432    799999999999862211         46422    48778888654    79997775      5


Q ss_pred             CCCCCC
Q psy11059        418 GRLCET  423 (429)
Q Consensus       418 G~~C~~  423 (429)
                      |.+|+.
T Consensus       270 G~~~~~  275 (280)
T 2p26_A          270 GQYCEH  275 (280)
T ss_dssp             STTSCE
T ss_pred             eEeccc
Confidence            777763

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=86.44  E-value=0.3  Score=45.03  Aligned_cols=44  Identities=20%  Similarity=0.507  Sum_probs=33.0

Q ss_pred             CCCCCCCC-CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          8 LSSPCDAQ-RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         8 ~~~~C~~~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      +.|||+.. ...|..  .|. ++.++|+|.|.+||.        ...++..|. +.+
T Consensus         1 ~~~eC~~~~~~~C~~--~C~-~~~~~~~C~C~~G~~--------l~~d~~sC~-p~~   45 (283)
T 3f1s_B            1 AKNECHPERTDGCQH--FCL-PGQESYTCSCAQGYR--------LGEDHKQCV-PHD   45 (283)
T ss_dssp             --CCCCSSCSSSCSS--BCC-CCTTSCCCBCCTTEE--------ECTTSSCEE-ECS
T ss_pred             CCCccCCCCCCCCCC--Eee-CCCCCeEecCCCCcc--------cCCCCCccc-ccc
Confidence            36899655 568876  698 999999999999998        445577786 444

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=85.09  E-value=1.5  Score=32.59  Aligned_cols=73  Identities=15%  Similarity=0.294  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCCCCCCC-CCCCCCCCCeEeeCCCCCCee
Q psy11059         11 PCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICT-TAPPCLNGATCRPQLTEQLYE   89 (429)
Q Consensus        11 ~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~   89 (429)
                      -|  ....|..++.|.....+.-.|.|..+|.-+          |..|..+.+. .|. ....|..+++|.... ...-.
T Consensus         6 ~C--~~tkcp~NA~Cyr~~dg~EecRCllnykk~----------~~kCV~~~~~-~C~~NNGGCd~nA~C~~~~-~~kIv   71 (95)
T 1b9w_A            6 RC--IDTNVPENAACYRYLDGTEEWRCLLYFKED----------AGKCVPAPNM-TCKDKNGGCAPEAECKMND-KNEIV   71 (95)
T ss_dssp             SC--SSCCCCTTEEEEECTTSCEEEEECTTEEEE----------TTEEEECTTC-CTTTGGGGSCTTSEEEECT-TSCEE
T ss_pred             cc--ccCCCCCCcCeEEEcCCCEEEEEECCeEec----------CCEEEcCCCC-CccccCCCcCCCcceeecC-CCcEE
Confidence            46  344889999999445678899999999954          8888755432 576 355688889999333 26789


Q ss_pred             eeCCCCCc
Q psy11059         90 CVCPPGYK   97 (429)
Q Consensus        90 C~C~~Gy~   97 (429)
                      |.|...|.
T Consensus        72 C~C~~~~~   79 (95)
T 1b9w_A           72 CKCTKEGS   79 (95)
T ss_dssp             EECCSTTE
T ss_pred             EECCCCCC
Confidence            99998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=84.07  E-value=0.38  Score=45.70  Aligned_cols=39  Identities=21%  Similarity=0.613  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      +|||+ ....|+.  .|+ ++.|+|+|.|.+||.        ...++..|.
T Consensus         1 i~ec~-~~~~C~~--~C~-n~~g~~~C~C~~g~~--------l~~d~~~C~   39 (349)
T 3v64_C            1 VNECA-EEGYCSQ--GCT-NSEGAFQCWCEAGYE--------LRPDRRSCK   39 (349)
T ss_dssp             ---------CCSS--EEC-CC---CCEECCTTEE--------ECTTSSCEE
T ss_pred             CcccC-CCCCCcC--eee-cCCCCeEEECCCCcc--------CCCCCCccc
Confidence            57895 5567877  899 999999999999998        233466674

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=83.88  E-value=0.7  Score=46.06  Aligned_cols=45  Identities=18%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             CCCCCCC-CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          9 SSPCDAQ-RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         9 ~~~C~~~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ++.|... .+||+.++.|+....+.|+|.|+.||.|.          |..|..+.+
T Consensus        18 ~~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~G~ag~----------G~~c~~D~D   63 (551)
T 3fby_A           18 QRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGN----------GILCGRDTD   63 (551)
T ss_dssp             CCBCTTSSBCCCCTTEEEEECTTSCEEEEECTTEESS----------SSSCEECTT
T ss_pred             cccCCCCCCCCCCCCCeeEeCCCCCEecCCCCCCCCC----------CcccCccCC
Confidence            3568653 47999999999666788999999999988          888875543

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=83.47  E-value=0.44  Score=32.57  Aligned_cols=23  Identities=26%  Similarity=0.749  Sum_probs=18.9

Q ss_pred             CCCCCCCeEeeCCCC-CCeeeeCCCCCc
Q psy11059         71 PPCLNGATCRPQLTE-QLYECVCPPGYK   97 (429)
Q Consensus        71 ~~C~~~g~C~~~~~~-~~~~C~C~~Gy~   97 (429)
                      ..|.+  .|+  +++ ++|+|.|++||.
T Consensus         7 ggC~~--~C~--n~~~gs~~C~C~~Gy~   30 (59)
T 2wph_E            7 GRCEQ--FCK--NSADNKVVCSCTEGYR   30 (59)
T ss_dssp             GGCSS--EEE--ECSTTCEEEECCTTEE
T ss_pred             CCcCC--EeE--eCCCCCEEeeCCCCcE
Confidence            34555  799  888 699999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	6e-10
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-09
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	5e-08
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	2e-09
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	6e-09
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	6e-09
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-07
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	3e-08
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	4e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	5e-08
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-06
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	3e-07
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	5e-07
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	5e-07
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	7e-07
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-06
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	3e-06
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	1e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	2e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	0.003
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	2e-05
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	3e-04
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	2e-04
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	0.001
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	4e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	0.001
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	7e-04
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	0.001
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	0.001
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	0.001
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	0.001

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 6e-10
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
           VD D+C SNPC NG +C++ IN Y C C  G+ GK C +
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 16/38 (42%), Positives = 28/38 (73%)

Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           ++ ++CES+PCL+G +C D++ ++ C CP G  G+ CE
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
           D+C ++PC N   C++ +  YTC C  G+ GK C + 
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
           ++CE+SPC +   C D +  ++C C +G  G+ CE  
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
           +EC+SNPC N ATC ++I  + C+C PGY G  C +N
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 387 INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
           +NEC S+PC + ATC+D++  F C+C  G  G  CE N
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
           D D+C S+PC NG +C++++  Y C C P + G+ C
Sbjct: 1   DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 36

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 387 INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
            ++C SSPC +G +C D++ ++ C C     GR CE
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
           DEC S+PC +   C +KIN + C C  G++G  C
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
           +EC SSPCLH   C+D++  F C CP G TG LC+
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
           DVD     +NPC +   C N +  + C C  GY+G  C I+
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 387 INECE--SSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
           ++EC   ++PC H   CI+ + +F C C +G TG  CE +
Sbjct: 3   VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI 387
             C +  C     C   IN YTC C PG+SG +C   +
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI 425
             C ++ C     C++ +  ++C C  G +G  CE  +
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 347 VDFDECLSNPCFNGATC-----QNKINGYTCVCAPGYSGKECSININECESSPC 395
           V   E     C NG  C      +  + Y C C PG++G  C+ N+     +  
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 7e-07
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 385 ININECESSPCLHGATC-----IDEVATFSCVCPKGLTGRLCETNIDDC 428
           +   E E + C++G  C     +   + + C C  G TG  C  N+   
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK 52

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
             C    C     C   I  YTC C PG+ G EC
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID 426
             C+   C     C++ +  ++C C  G  G  CE   D
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 40

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 387 INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID 426
            + C S  C HG TCID + +FSC C  G  GR C+  + 
Sbjct: 8   EHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININ 388
             C S  C +G TC + I  ++C C  G+ G+ C   ++
Sbjct: 9   HPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 260 DPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELT 292
             C HG+C+D    + CDC   + G+ C  E++
Sbjct: 14  LCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 352 CLSNPCFNGATCQNKI--NGYTCVCAPGYSGKECSININE 389
           C    CFNG TCQ  +  + + C C  G++GK C I+   
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 40

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 390 CESSPCLHGATCIDEV--ATFSCVCPKGLTGRLCETNID 426
           C    C +G TC   +  + F C CP+G  G+ CE +  
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 350 DECLSNPCFNGATCQN-KINGYTCVC-APGYSGKECSI 385
           + C SNPC N   C +   + Y C C   G+ G+ C+ 
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 388 NECESSPCLHGATCID-EVATFSCVCPK-GLTGRLCET 423
           N C S+PC +   C+      + C C + G  G  C T
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 350 DECLSNPCFNGATCQNK-INGYTCVCAP-GYSGKECSI 385
           + C   PC +   C    ++ Y C C   GYSG  C+I
Sbjct: 3   NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 387 INECESSPCLHGATCIDE-VATFSCVCPK-GLTGRLCET 423
           +N C   PC H   C+   +  + C C + G +G  C  
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 350 DECLSNPCFNGATCQN--KINGYTCVCAPGYSGKEC 383
                  C NG  C +   ++ YTC C  GYSG  C
Sbjct: 7   PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 388 NECESSPCLHGATC--IDEVATFSCVCPKGLTGRLCET 423
                  CL+G  C  I+ + +++C C  G +G  C+T
Sbjct: 7   PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 12/34 (35%), Positives = 12/34 (35%)

Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
           VD DEC          C N    Y C C  GY  
Sbjct: 3   VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL 36

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 346 DVDFDECLSNPCFNGATCQN--KINGYTCVCAPGYSGKEC 383
           D +        C +   C     ++ Y C C  GY G+ C
Sbjct: 1   DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 387 INECESSPCLHGATC--IDEVATFSCVCPKGLTGRLCET 423
                   CLH   C  I+ +  ++C C  G  G  C+ 
Sbjct: 4   CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.07
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.94
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.92
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.88
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.86
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.84
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.83
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.83
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.8
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.76
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.71
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.65
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.65
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.56
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.55
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.55
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.53
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.5
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.44
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.44
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.42
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.31
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.27
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.14
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.12
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.04
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.03
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.99
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.83
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.8
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.7
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.67
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1nt0a3	45	Mannose-binding protein associated serine protease	97.65
d1szba2	45	Mannose-binding protein associated serine protease	97.61
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.59
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.44
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.36
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.35
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.35
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.35
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.26
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.23
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.15
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.55
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.45
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.34
d1szba2	45	Mannose-binding protein associated serine protease	96.3
d1nt0a3	45	Mannose-binding protein associated serine protease	96.26
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.24
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.2
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.06
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.05
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.01
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.88
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	95.46
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	95.19
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	94.57
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	94.23
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	94.06
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	92.97
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	92.93
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	92.91
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	91.79
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	91.19
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	90.92
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	89.96
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	89.54
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	87.76
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	87.21
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	86.67
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	86.0
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	85.96
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	85.74
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	84.31
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	84.18
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	83.46
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	83.17
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	80.78

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.3e-11  Score=76.63  Aligned_cols=41  Identities=32%  Similarity=0.755  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      .++|||+..++||+++|+|+ ++.++|+|.|++||+            |.+|++
T Consensus         1 qDideC~~~~~pC~n~g~C~-n~~g~y~C~C~~G~~------------G~~Ce~   41 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCI-NTLGSFECQCLQGYT------------GPRCEI   41 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEE-ECSSSEEEECCTTEE------------STTSCE
T ss_pred             CCCccccCCCCCCCCCcEeE-CCCCCEEeECCCCCc------------CCCCcC
Confidence            37899987789999999999 999999999999999            999975

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.9e-10  Score=71.37  Aligned_cols=38  Identities=37%  Similarity=0.910  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      ||+|  .++||+|+|+|+ +..++|+|+|++||+            |..||++
T Consensus         1 Id~C--~~~PC~n~g~C~-~~~~~y~C~C~~G~~------------G~~Ce~d   38 (39)
T d2vj3a2           1 VNEC--VSNPCQNDATCL-DQIGEFQCICMPGYE------------GVHCEVN   38 (39)
T ss_dssp             CCTT--TTCCCCSSCEEE-ECSSCEEEECCTTEE------------SSSSCEE
T ss_pred             CcCC--cCCCCCCCCEEE-CCCCCEEEeCCCCCc------------cCcCeeC
Confidence            6899  899999999999 999999999999999            9999864

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.7e-10  Score=70.17  Aligned_cols=38  Identities=37%  Similarity=0.914  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ++|+|  .++||.|+|+|+ +..++|+|.|++||+            |.+||+
T Consensus         2 d~d~C--~~~PC~ngg~C~-~~~~~y~C~C~~g~~------------G~~Cei   39 (39)
T d1edmb_           2 DGDQC--ESNPCLNGGSCK-DDINSYECWCPFGFE------------GKNCEL   39 (39)
T ss_dssp             CCCTT--TTCCCCTTCEEE-EETTEEEEECCTTCC------------STTSCC
T ss_pred             ccccC--CCCCCCCCcEEE-cCCCCEEEECCCCCC------------CCCCCC
Confidence            58999  899999999999 999999999999999            999873

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.5e-10  Score=68.47  Aligned_cols=39  Identities=41%  Similarity=1.157  Sum_probs=30.5

Q ss_pred             CCCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       385 ~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      +++|+|.++||.++|+|++..++|+|.|++||+|.+||+
T Consensus         1 id~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             CccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCCC
Confidence            367778888888888888877888888888888888763

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=3.5e-10  Score=69.32  Aligned_cols=37  Identities=38%  Similarity=0.890  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      |+|+|  .++||+|+|+|+ +..++|.|+|++||+            |.+||
T Consensus         1 D~d~C--~~~PC~ngg~C~-~~~~~y~C~C~~g~~------------G~~Ce   37 (37)
T d2c4fl1           1 DGDQC--ASSPCQNGGSCK-DQLQSYICFCLPAFE------------GRNCE   37 (37)
T ss_dssp             TCCGG--GGCCCCTTCEEE-EETTEEEEECCTTEE------------STTSC
T ss_pred             CcccC--CCCCCCCCCEEE-CCCCCeEEECCCCCc------------CCCCC
Confidence            68999  899999999999 999999999999999            88885

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.8e-10  Score=68.28  Aligned_cols=38  Identities=47%  Similarity=1.135  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        387 INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       387 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      ||+|.++||.++++|++..++|+|.|++||+|.+|+++
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCeeC
Confidence            56777788888888888777888888888888888753

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.4e-10  Score=68.37  Aligned_cols=37  Identities=43%  Similarity=0.947  Sum_probs=34.6

Q ss_pred             CCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      |+|  .++||+|+|+|+ +..++|+|.|++||+            |..||+.
T Consensus         1 D~C--~~~PC~ngg~C~-~~~~~y~C~C~~G~~------------G~~Cei~   37 (39)
T d1xkba1           1 DQC--ETSPCQNQGKCK-DGLGEYTCTCLEGFE------------GKNCELF   37 (39)
T ss_dssp             CTT--TTCCCCSSCEEC-CCSSSCCEECCTTEE------------TTTTCEE
T ss_pred             CcC--CCCCCCCCcEEE-CCCCCEEEECCCCCC------------cCcCeEc
Confidence            689  799999999999 999999999999999            9999864

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1e-09  Score=69.59  Aligned_cols=38  Identities=39%  Similarity=1.092  Sum_probs=29.5

Q ss_pred             CCCCCC--CCCCCCCCEEccCCCCeeeeCCCCCCCCCCCC
Q psy11059        386 NINECE--SSPCLHGATCIDEVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       386 ~~~~C~--~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~  423 (429)
                      +||+|.  ++||.++++|+++.++|+|.|++||+|.+|++
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            567776  56788888888888888888888888888874

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1e-09  Score=67.24  Aligned_cols=37  Identities=38%  Similarity=1.017  Sum_probs=28.8

Q ss_pred             CCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCC
Q psy11059        386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       386 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~  422 (429)
                      |+|+|.++||.++++|++..++|+|+|++||+|.+||
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            4677777888888888777777888888888887775

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.2e-09  Score=64.84  Aligned_cols=35  Identities=29%  Similarity=0.874  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      |+|  .++||+|+|+|+ +..++|+|.|++||+            |..||
T Consensus         1 d~C--~~~PC~ngg~C~-~~~~~y~C~C~~g~~------------G~~CE   35 (35)
T d2vj3a3           1 DEC--ASSPCLHNGRCL-DKINEFQCECPTGFT------------GHLCQ   35 (35)
T ss_dssp             CTT--TTCCSTTTCEEE-ECSSCEEEECCTTEE------------SSSSC
T ss_pred             CCC--CCCCCCCCcEEE-CCCCCeEEECCCCCC------------CCCcC
Confidence            689  899999999999 999999999999999            88885

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.2e-09  Score=65.71  Aligned_cols=37  Identities=35%  Similarity=0.995  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      |+|.++||.++|+|++..++|+|.|++||+|.+|++.
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence            4677778888888887777888888888888888754

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.9e-09  Score=61.91  Aligned_cols=35  Identities=54%  Similarity=1.387  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~  422 (429)
                      |+|.++||.++|+|++..++|+|+|++||+|.+||
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            46777888888888888888888888888888875

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.8e-09  Score=66.92  Aligned_cols=37  Identities=30%  Similarity=0.876  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      ++|  .++||+|+|+|+ +..++|+|.|++||+            |..||.+
T Consensus         2 ~~C--~~~pC~ngg~C~-~~~~~~~C~C~~g~~------------G~~Ce~~   38 (39)
T d1g1ta2           2 AAC--TNTSCSGHGECV-ETINNYTCKCDPGFS------------GLKCEQI   38 (39)
T ss_dssp             CCC--CTTGGGGSEEEE-EETTEEEEEECTTEE------------STTSCEE
T ss_pred             Ccc--cCCcCCCCcEEE-CCCCCEEEeCCCCCc------------CcCcCcc
Confidence            679  899999999999 999999999999999            9999864

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.3e-08  Score=61.89  Aligned_cols=38  Identities=34%  Similarity=1.013  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCEEccC--CCCeeeeCCCCCCCCCCCCCCCC
Q psy11059        390 CESSPCLHGATCIDE--VATFSCVCPKGLTGRLCETNIDD  427 (429)
Q Consensus       390 C~~~~C~~~~~C~~~--~~~~~C~C~~g~~G~~C~~~i~~  427 (429)
                      |.++||.++|+|+..  ..+|+|+|++||+|.+|++++++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~~   40 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA   40 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSSC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcCC
Confidence            467788888888764  45788888888888888888765

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.1e-09  Score=64.85  Aligned_cols=38  Identities=24%  Similarity=0.840  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNI  425 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i  425 (429)
                      +.|.++||.++|+|++..++|+|.|++||+|.+|+.+|
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~v   39 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV   39 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEEC
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCccC
Confidence            35666777777777777777777777777777776544

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-08  Score=61.49  Aligned_cols=37  Identities=24%  Similarity=0.578  Sum_probs=32.3

Q ss_pred             CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         15 QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        15 ~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      .++||+|+|+|+. ...++|+|+|++||+            |..||++++
T Consensus         2 ~~nPC~ngG~C~~~~~~~~y~C~C~~g~~------------G~~Ce~~~~   39 (41)
T d1tpga1           2 SEPRCFNGGTCQQALYFSDFVCQCPEGFA------------GKSCEIDTR   39 (41)
T ss_dssp             SSCCSCTTCEEEEESSSSCEEEECCTTCB------------SSSCCBCSS
T ss_pred             cCCCCCCCCEEecCCCCCCeEECCCCCCC------------CCCcCcCcC
Confidence            6899999999993 235689999999999            999998876

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.8e-08  Score=65.15  Aligned_cols=41  Identities=29%  Similarity=0.770  Sum_probs=36.9

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ..+|+|  .++||+| |+|+ +..++|+|.|++||+            |.+|+.+|.
T Consensus         6 p~~~~C--~~~PC~n-G~C~-~~~~~y~C~C~~G~~------------G~~Ce~~I~   46 (48)
T d1autl1           6 PLEHPC--ASLCCGH-GTCI-DGIGSFSCDCRSGWE------------GRFCQREVS   46 (48)
T ss_dssp             SSCCSS--SSTTTTS-EEEC-CCSSCCCEEECTTEE------------STTSCEECC
T ss_pred             CCCCcc--cCCCCCC-CEEE-CCCCCCeEeCCCCCc------------CCCcccccC
Confidence            347899  8999997 8999 999999999999999            999998775

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-08  Score=63.61  Aligned_cols=36  Identities=33%  Similarity=0.820  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      |.|  .++||.|+|+|+ +..++|+|.|++||+            |..|+.
T Consensus         2 ~~C--~~~pC~ngg~C~-~~~~~y~C~C~~g~~------------G~~Ce~   37 (40)
T d1g1sa2           2 ASC--QDMSCSKQGECL-ETIGNYTCSCYPGFY------------GPECEY   37 (40)
T ss_dssp             CCC--CTTGGGGSEEEE-ECSSSEEEEECTTEE------------STTSCE
T ss_pred             Ccc--cCCcCCCCcEEE-CCCCCeEEeCCCCcc------------CCCCCC
Confidence            678  899999999999 999999999999999            999984

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.8e-08  Score=63.54  Aligned_cols=40  Identities=40%  Similarity=0.909  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCCCC
Q psy11059        386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID  426 (429)
Q Consensus       386 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~i~  426 (429)
                      .+++|.++||.+ |+|++..++|+|.|++||+|.+|+++|.
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEECC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccccC
Confidence            355777777776 6787777778888888888888877663

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.44  E-value=2.9e-08  Score=62.46  Aligned_cols=39  Identities=31%  Similarity=0.742  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCC-CCcccccccccCcCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDA-LHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~-g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      +|+|  .++||+|+|+|+....++|+|.|.+ ||+            |.+||++
T Consensus         2 id~C--~~nPC~ngG~C~~~~~~~y~C~C~~~G~~------------G~~Ce~p   41 (42)
T d1q4ga2           2 VNPC--CYYPCQHQGICVRFGLDRYQCDCTRTGYS------------GPNCTIP   41 (42)
T ss_dssp             CCGG--GGCCCCTTCEEEEETTTEEEEECTTSSEE------------TTTTCEE
T ss_pred             CccC--cCCCCCCCCEeeeCCCCCEEEECCCCCcC------------CcCcCcC
Confidence            6899  8999999999993346899999986 999            9999853

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.7e-08  Score=61.87  Aligned_cols=37  Identities=24%  Similarity=0.797  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCCEEccCCCCeeeeCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      +.|.++||.++|+|++..++|+|.|++||+|.+|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCCC
Confidence            3466667777777777777777777777777777643

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.8e-08  Score=61.11  Aligned_cols=33  Identities=30%  Similarity=0.798  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      |+|||+..++.|. +|+|+ |+.|+|+|.|++||+
T Consensus         1 DidEC~~~~~~C~-~~~C~-Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCH-NTEGSYRCECPPGHQ   33 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEE-EETTEEEEESCTTSC
T ss_pred             CccccCCCCCCCC-CCEeE-CCCCCeEEeCCCCCe
Confidence            5899988888896 58999 999999999999999

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1.1e-07  Score=59.31  Aligned_cols=38  Identities=39%  Similarity=0.955  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCCCCEeccCC-CCceEEecC-CCCcccccccccCcCCCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDE-TGNYDCTCD-ALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~-~~~~~C~C~-~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      .|+|  .++||+|+|+|+ +. .++|+|.|+ +||+            |.+|+++
T Consensus         1 ad~C--~~~PC~ngG~C~-~~~~~~y~C~C~~~gy~------------G~~Ce~p   40 (41)
T d1cvua2           1 ANPC--CSNPCQNRGECM-STGFDQYKCDCTRTGFY------------GENCTTP   40 (41)
T ss_dssp             CCTT--TTCCCCTTCEEE-EEETTEEEEECTTSSEE------------TTTTCEE
T ss_pred             CCcC--cCCCCCCCCEEE-ECCCCCEEEeCcCCCcC------------CcCcCcC
Confidence            3789  899999999998 54 688999996 6999            9999853

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.6e-08  Score=61.95  Aligned_cols=33  Identities=27%  Similarity=0.636  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      |||||+..++.|.+ ++|+ +++|+|+|.|++||+
T Consensus         2 DinEC~~~~~~c~~-~~C~-Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQG-GKCI-NTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHCGGGGBT-SEEE-ECSSCEEEECCTTCC
T ss_pred             CcccccCCCCCcCC-CEEE-CCCCCeEeECCCCCe
Confidence            68999877888974 7999 999999999999999

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-07  Score=59.98  Aligned_cols=35  Identities=23%  Similarity=0.644  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCccc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVC   44 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   44 (429)
                      |||||+..+.+|. +++|+ |+.|+|+|.|++||+++
T Consensus         2 DidEC~~~~~~C~-~~~C~-Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCV-NTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEE-EETTEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeE-cCCCCeEEeCCCCCccC
Confidence            7999987788897 48999 99999999999999944

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.27  E-value=1.3e-07  Score=59.36  Aligned_cols=37  Identities=30%  Similarity=0.855  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCCCEEccC-CCCeeeeCCC-CCCCCCCCC
Q psy11059        387 INECESSPCLHGATCIDE-VATFSCVCPK-GLTGRLCET  423 (429)
Q Consensus       387 ~~~C~~~~C~~~~~C~~~-~~~~~C~C~~-g~~G~~C~~  423 (429)
                      ||+|.++||.++|+|++. .++|+|.|+. ||+|.+|++
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            567778888888888764 5678888875 788888875

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.4e-07  Score=59.55  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCccc
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVC   44 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   44 (429)
                      .|+|||  +..++..+++|+ +++|+|+|.|++||+++
T Consensus         3 vDidEC--~~~~~~~~~~C~-Nt~Gsy~C~C~~Gy~~~   37 (43)
T d1emoa1           3 VDMDEC--KEPDVCKHGQCI-NTDGSYRCECPFGYILA   37 (43)
T ss_dssp             CCCCSS--SSTTSCSSSCCC-CCSSCCCCCCCTTEEES
T ss_pred             cceecc--CCcCCCCCCEeE-CCCCCeEeECCCCcccC
Confidence            479999  455566678999 99999999999999955

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=4.9e-07  Score=56.33  Aligned_cols=36  Identities=33%  Similarity=0.900  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCEEccC-CCCeeeeCC-CCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCIDE-VATFSCVCP-KGLTGRLCET  423 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~~-~~~~~C~C~-~g~~G~~C~~  423 (429)
                      |+|.++||.++|+|++. .++|+|.|+ +||+|.+|++
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            56777888888888764 567888885 5888888875

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=9.1e-08  Score=59.16  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         14 AQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        14 ~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      +..+.|+.+++|+ +++|+|+|+|++||+|+          |..|.
T Consensus         4 ~~~~~C~~~A~C~-Nt~Gsy~C~C~~Gy~Gd----------G~~C~   38 (40)
T d1gl4a2           4 NNRHQCSVHAECR-DYATGFCCRCVANYTGN----------GRQCV   38 (40)
T ss_dssp             HHGGGSCTTEEEE-ECSSCEEEEECTTEEEC----------SSSEE
T ss_pred             CCCCCCCCCCEee-cCCCCeEeECCCCCcCC----------CCEee
Confidence            4567899999999 99999999999999998          88875

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-06  Score=57.71  Aligned_cols=35  Identities=17%  Similarity=0.432  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCCCCC------CEeccCCCCceEEecCCCCc
Q psy11059          7 SLSSPCDAQRNPCQNG------GKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~------g~C~~~~~~~~~C~C~~g~~   42 (429)
                      .|||||+.....|..+      .+|+ |++|+|+|.|++||+
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~-Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCH-NYVGGYFCSCRPGYE   42 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEE-EETTEEEEECSTTCE
T ss_pred             eecccccCCCCCcccCCCCCccCEeE-cCCCCeEeECCCCCe
Confidence            3699998777666543      3799 999999999999998

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.3e-07  Score=62.23  Aligned_cols=41  Identities=29%  Similarity=0.717  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCCEEc-----cCCCCeeeeCCCCCCCCCCCCCCCC
Q psy11059        387 INECESSPCLHGATCI-----DEVATFSCVCPKGLTGRLCETNIDD  427 (429)
Q Consensus       387 ~~~C~~~~C~~~~~C~-----~~~~~~~C~C~~g~~G~~C~~~i~~  427 (429)
                      .++|..++|.++|+|+     +..++|+|+|++||+|.+|+..|..
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~   51 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCc
Confidence            4455566677777773     3445677777777777777665543

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=7.4e-07  Score=61.47  Aligned_cols=42  Identities=24%  Similarity=0.581  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCCCCEec----cCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059          8 LSSPCDAQRNPCQNGGKCN----EDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~----~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ..|+|  ..+||+|+|+|+    .+..++|+|.|++||+            |.+|+..+.
T Consensus         5 ~c~ec--~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~------------G~~Ce~~~~   50 (63)
T d1haea_           5 KCAEK--EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT------------GARCTENVP   50 (63)
T ss_dssp             ECCHH--HHTTSCTTCEEEEEESSSSSCCEEEECCTTEE------------STTSCEECC
T ss_pred             cCCCC--cCCcCCCCCEEeecccccCCCCEEeECCCCCC------------CCCcCCCCC
Confidence            35688  799999999994    1667899999999999            999997765

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.3e-06  Score=53.91  Aligned_cols=32  Identities=25%  Similarity=0.637  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      +||||+. ++.+. +++|+ ++.|+|+|.|++||+
T Consensus         2 DidEC~~-~~~~c-~~~C~-Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLD-PTTCI-SGNCV-NTPGSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGS-TTSSB-TSEEE-EETTEEEEECCTTCE
T ss_pred             CccccCC-CCcCc-CCEeE-CCCCCEEEecCCCCE
Confidence            7999974 34443 57999 999999999999998

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.1e-06  Score=53.88  Aligned_cols=32  Identities=22%  Similarity=0.723  Sum_probs=27.9

Q ss_pred             CCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcc
Q psy11059          8 LSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTV   43 (429)
Q Consensus         8 ~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g   43 (429)
                      |||||+ ..++|+  .+|+ ++.|+|+|.|++||++
T Consensus         1 DidEC~-~~~~C~--~~C~-N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECE-NGGFCS--GVCH-NLPGTFECICGPDSAL   32 (40)
T ss_dssp             ECCHHH-HCSSCS--SEEE-ECSSSEEEEECSSSSC
T ss_pred             CccccC-CCcCcc--CEee-CCCCCeEeECCCCCee
Confidence            589996 468896  4999 9999999999999993

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5e-06  Score=51.67  Aligned_cols=39  Identities=21%  Similarity=0.635  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      ||||+ .+++|..  .|+ ++.|+|+|.|++||+        ...+|..|+
T Consensus         1 idEC~-~~~~C~~--~C~-n~~Gsy~C~C~~Gy~--------L~~d~~~C~   39 (41)
T d1i0ua2           1 IDECQ-DPDTCSQ--LCV-NLEGGYKCQCEEGFQ--------LDPHTKACK   39 (41)
T ss_dssp             CCTTT-TTTSCSS--CEE-CSSSCCEECCCTTEE--------ECTTTCCEE
T ss_pred             CccCC-CCCCCCC--EeE-CCCCCEEeECCCCCe--------ECCCCCccc
Confidence            68996 5778865  899 999999999999999        334566664

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=2.4e-05  Score=51.38  Aligned_cols=37  Identities=27%  Similarity=0.789  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCCCEEcc--CCCCeeeeCCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCID--EVATFSCVCPKGLTGRLCETN  424 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~--~~~~~~C~C~~g~~G~~C~~~  424 (429)
                      ++|.+++|.++|+|+.  ...+|+|.|++||+|.+||..
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   45 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccC
Confidence            3456678888888863  345788888888888888754

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=8.1e-06  Score=51.23  Aligned_cols=33  Identities=30%  Similarity=0.708  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         60 TPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        60 ~~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +|||  ||+ ..++..+++|+  |++|+|+|.|++||+
T Consensus         3 vDid--EC~-~~~~~~~~~C~--Nt~Gsy~C~C~~Gy~   35 (43)
T d1emoa1           3 VDMD--ECK-EPDVCKHGQCI--NTDGSYRCECPFGYI   35 (43)
T ss_dssp             CCCC--SSS-STTSCSSSCCC--CCSSCCCCCCCTTEE
T ss_pred             ccee--ccC-CcCCCCCCEeE--CCCCCeEeECCCCcc
Confidence            4888  998 55555678999  999999999999997

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.1e-05  Score=51.64  Aligned_cols=38  Identities=26%  Similarity=0.599  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      ++|  .+++|.|+|+|+. .....|+|.|++||+            |..||..
T Consensus         7 ~~c--~~~~C~NgG~C~~~~~~~~~~C~C~~gy~------------G~~Ce~~   45 (53)
T d3egfa_           7 PSS--YDGYCLNGGVCMHIESLDSYTCNCVIGYS------------GDRCQTR   45 (53)
T ss_dssp             CTT--SSCCSCSSCEEEEESSSSCEEEECCTTCC------------SSSSCCC
T ss_pred             CCC--CCCCCCCCcEeeccCCCCCeEeECCCCCc------------CCCCccC
Confidence            466  7889999999972 445689999999999            9999853

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.5e-06  Score=51.23  Aligned_cols=33  Identities=33%  Similarity=0.689  Sum_probs=27.9

Q ss_pred             CCCCCCCCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         60 TPISNQICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        60 ~~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +|||  ||+ ....|. +++|+  |++|+|+|.|++||+
T Consensus         1 TDid--EC~~~~~~C~-~~~C~--Nt~Gsy~C~C~~Gy~   34 (44)
T d1lmja1           1 TDID--ECRISPDLCG-RGQCV--NTPGDFECKCDEGYE   34 (44)
T ss_dssp             CCCC--TTTTCSSTTT-TSCEE--EETTEEEECCCSSEE
T ss_pred             Cccc--ccCCCCCCCC-CCEeE--cCCCCeEEeCCCCCc
Confidence            3778  998 455675 48999  999999999999998

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=7.7e-06  Score=51.96  Aligned_cols=42  Identities=17%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             CCCCCCCCCC-CCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          9 SSPCDAQRNP-CQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         9 ~~~C~~~~~~-C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      ||||+..... ..-..+|+ ++.|+|+|.|++||+        ...+|++|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~-Nt~gsy~C~C~~Gy~--------L~~d~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCH-NYLGGYYCSCRVGYI--------LHQNKHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEE-EETTEEEEECCTTEE--------ECTTSSCEE
T ss_pred             CcCCccCCCCcCCCCCEee-cCCCCEEEeCCCCCE--------ECCCCCccc
Confidence            6899654333 22245999 999999999999998        334566664

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.4e-05  Score=50.73  Aligned_cols=42  Identities=17%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCC-CCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059          9 SSPCDAQRNPC-QNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus         9 ~~~C~~~~~~C-~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      ||||+.....+ .-..+|+ ++.|+|+|.|++||.        ...+|.+|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~-Nt~Gsy~C~C~~Gy~--------l~~d~~tC~   43 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCH-NHLGGFYCSCRAGYV--------LHRNKRTCS   43 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEE-EETTEEEEECCTTEE--------ECTTSSCEE
T ss_pred             CcCCcCCCCCCCCCCCCCc-cCCCCeEEECCCCCe--------ECCCCCCcc
Confidence            68996544433 2355999 999999999999999        334566664

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=51.07  Aligned_cols=37  Identities=19%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         10 SPCDAQRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        10 ~~C~~~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ++|  ..++|.|+|+|+. ....+|+|.|++||+            |.+||.
T Consensus         5 ~~c--~~~~C~ngG~C~~~~~~~~~~C~C~~gy~------------G~~Ce~   42 (48)
T d1nqlb_           5 PLS--HDGYCLHDGVCMYIEALDKYACNCVVGYI------------GERCQY   42 (48)
T ss_dssp             CST--TCCEECTTCEEEEETTTTEEEEEECTTEE------------STTSCE
T ss_pred             CCC--CCCCCCCCcEEeeeCCCCCeEEeCCCCcc------------cCCCCc
Confidence            466  7889999999973 455789999999999            999984

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=7.4e-06  Score=51.14  Aligned_cols=32  Identities=41%  Similarity=0.908  Sum_probs=26.8

Q ss_pred             CCCCCCCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         61 PISNQICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        61 ~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      |||  ||+ ....|. +++|+  |++|+|+|.|++||+
T Consensus         1 Did--EC~~~~~~C~-~~~C~--Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           1 DID--ECQRDPLLCR-GGVCH--NTEGSYRCECPPGHQ   33 (42)
T ss_dssp             ECC--HHHHCSSTTT-TSEEE--EETTEEEEESCTTSC
T ss_pred             Ccc--ccCCCCCCCC-CCEeE--CCCCCeEEeCCCCCe
Confidence            456  886 566675 58999  999999999999998

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.8e-05  Score=48.79  Aligned_cols=18  Identities=22%  Similarity=0.933  Sum_probs=9.7

Q ss_pred             CEEccCCCCeeeeCCCCC
Q psy11059        399 ATCIDEVATFSCVCPKGL  416 (429)
Q Consensus       399 ~~C~~~~~~~~C~C~~g~  416 (429)
                      ++|+|++++|+|.|++||
T Consensus        15 ~~C~Nt~G~y~C~C~~Gy   32 (43)
T d1uzka1          15 GNCVNTPGSYICDCPPDF   32 (43)
T ss_dssp             SEEEEETTEEEEECCTTC
T ss_pred             CEeECCCCCEEEecCCCC
Confidence            455555555555555555

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.5e-05  Score=50.18  Aligned_cols=36  Identities=25%  Similarity=0.695  Sum_probs=25.6

Q ss_pred             CCCCCCCCCCCCEEcc--CCCCeeeeCCCCCCCCCCCC
Q psy11059        388 NECESSPCLHGATCID--EVATFSCVCPKGLTGRLCET  423 (429)
Q Consensus       388 ~~C~~~~C~~~~~C~~--~~~~~~C~C~~g~~G~~C~~  423 (429)
                      ++|..++|.++|+|+.  ...+|+|+|++||+|.+||.
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            3455677888888854  34567888888888888874

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=1.4e-05  Score=48.95  Aligned_cols=31  Identities=26%  Similarity=0.661  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         61 PISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        61 ~~~~~~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      |||  ||+..++|.+  +|+  |++|+|+|.|++||+
T Consensus         1 Did--EC~~~~~C~~--~C~--N~~Gsy~C~C~~Gy~   31 (40)
T d1dx5i3           1 DID--ECENGGFCSG--VCH--NLPGTFECICGPDSA   31 (40)
T ss_dssp             ECC--HHHHCSSCSS--EEE--ECSSSEEEEECSSSS
T ss_pred             Ccc--ccCCCcCccC--Eee--CCCCCeEeECCCCCe
Confidence            356  7875677865  999  999999999999998

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.6e-05  Score=46.87  Aligned_cols=39  Identities=26%  Similarity=0.569  Sum_probs=30.1

Q ss_pred             CCCCCC-CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         10 SPCDAQ-RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        10 ~~C~~~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      |||+.. .++|+.  +|+ +++|+|+|.|++||+        ...+|.+|.
T Consensus         1 dEC~~~~~~~C~~--~C~-n~~Gsy~C~C~~Gy~--------L~~d~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCSH--FCN-NFIGGYFCSCPPEYF--------LHDDMKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSSS--EEE-EETTEEEEECCTTCE--------ECTTSSCEE
T ss_pred             CCCCCCCCcCCCC--Eee-cCCCCEEEeCCCCCE--------ECCCCCeec
Confidence            688643 468976  899 999999999999999        334566664

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=3.9e-05  Score=44.29  Aligned_cols=31  Identities=35%  Similarity=1.008  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      .|||+ ..+||.| |+|. +..|+|.|.|..||.
T Consensus         1 tdECs-ignpCGn-GTCt-NviGgFec~C~~GFe   31 (39)
T d1emoa2           1 TDECS-VGNPCGN-GTCK-NVIGGFECTCEEGFE   31 (39)
T ss_dssp             CCGGG-TTCSSSS-SCEE-ECSSSEEECCSSSSC
T ss_pred             CCccc-cCCccCC-ceee-ecccceEEeecCCcC
Confidence            47897 4489988 8999 999999999999997

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.8e-05  Score=47.79  Aligned_cols=31  Identities=26%  Similarity=0.645  Sum_probs=27.9

Q ss_pred             CCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      +|||+.....|+.  .|+ +++++|+|.|++||+
T Consensus         2 ~neC~~~nggC~h--~C~-n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           2 TNECLDNNGGCSH--VCN-DLKIGYECLCPDGFQ   32 (40)
T ss_dssp             SCGGGTGGGGCSS--EEE-ECSSSEEEECCTTCC
T ss_pred             cccCCCCCCCCcC--EEE-cCCCCEEEECCCCCE
Confidence            6899777778976  999 999999999999999

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=1.7e-05  Score=49.71  Aligned_cols=32  Identities=31%  Similarity=0.708  Sum_probs=27.1

Q ss_pred             CCCCCCCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         61 PISNQICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        61 ~~~~~~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      |||  ||+ ....|.+ ++|+  |++|+|+|.|++||+
T Consensus         2 Din--EC~~~~~~c~~-~~C~--Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DID--ECQELPGLCQG-GKCI--NTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECC--HHHHCGGGGBT-SEEE--ECSSCEEEECCTTCC
T ss_pred             Ccc--cccCCCCCcCC-CEEE--CCCCCeEeECCCCCe
Confidence            677  887 4666754 6999  999999999999998

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.6e-05  Score=45.86  Aligned_cols=28  Identities=29%  Similarity=0.755  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         66 ICTTAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        66 ~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ||+..++|.+  +|+  ++.++|+|.|++||+
T Consensus         3 EC~~~~~C~~--~C~--n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2           3 ECQDPDTCSQ--LCV--NLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             TTTTTTSCSS--CEE--CSSSCCEECCCTTEE
T ss_pred             cCCCCCCCCC--EeE--CCCCCEEeECCCCCe
Confidence            8876678866  899  999999999999998

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=9.4e-05  Score=48.58  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=25.8

Q ss_pred             CCCCCCCCC-CCCCCCC------CCeEeeCCCCCCeeeeCCCCCc
Q psy11059         60 TPISNQICT-TAPPCLN------GATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        60 ~~~~~~~C~-~~~~C~~------~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +|||  ||. ....|..      ..+|+  |++|+|+|.|++||+
T Consensus         2 vDid--EC~~~~~~c~~~~~~~c~~~C~--Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_           2 VDLD--ECASRSKSGEEDPQPQCQHLCH--NYVGGYFCSCRPGYE   42 (53)
T ss_dssp             CSCC--TTTCSTTTCCCSSSCTTSSEEE--EETTEEEEECSTTCE
T ss_pred             eecc--cccCCCCCcccCCCCCccCEeE--cCCCCeEeECCCCCe
Confidence            5777  887 2333422      34899  999999999999998

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=4.8e-05  Score=46.57  Aligned_cols=27  Identities=33%  Similarity=0.671  Sum_probs=22.2

Q ss_pred             CCCCCCCEEccCCCCeeeeCCCCCCCC
Q psy11059        393 SPCLHGATCIDEVATFSCVCPKGLTGR  419 (429)
Q Consensus       393 ~~C~~~~~C~~~~~~~~C~C~~g~~G~  419 (429)
                      +.|+.+++|++++++|+|+|++||+|+
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCC
Confidence            457778889888889999999998854

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00052  Score=44.01  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|.+++.|.......+.|.|+.||+|..|++
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCcc
Confidence            57999999966677789999999999999985

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00072  Score=38.89  Aligned_cols=29  Identities=34%  Similarity=0.897  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         66 ICTTAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        66 ~C~~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +|...++|.+ |+|.  +.++.|.|.|..||.
T Consensus         3 ECsignpCGn-GTCt--NviGgFec~C~~GFe   31 (39)
T d1emoa2           3 ECSVGNPCGN-GTCK--NVIGGFECTCEEGFE   31 (39)
T ss_dssp             GGGTTCSSSS-SCEE--ECSSSEEECCSSSSC
T ss_pred             ccccCCccCC-ceee--ecccceEEeecCCcC
Confidence            7776788987 8999  999999999999997

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00075  Score=43.01  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=27.0

Q ss_pred             CCCCCCcEeccCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|.+++.|.......+.|.|+.||+|..|++
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCCcc
Confidence            57999888866667789999999999999985

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00063  Score=41.48  Aligned_cols=28  Identities=32%  Similarity=0.866  Sum_probs=23.8

Q ss_pred             CCC-CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         66 ICT-TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        66 ~C~-~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ||. ....|.+  +|+  +++++|+|.|++||+
T Consensus         4 eC~~~nggC~h--~C~--n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           4 ECLDNNGGCSH--VCN--DLKIGYECLCPDGFQ   32 (40)
T ss_dssp             GGGTGGGGCSS--EEE--ECSSSEEEECCTTCC
T ss_pred             cCCCCCCCCcC--EEE--cCCCCEEEECCCCCE
Confidence            676 3556776  999  999999999999998

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.001  Score=41.71  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=18.5

Q ss_pred             CCeEeeCCCCCCeeeeCCCCCc
Q psy11059         76 GATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        76 ~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ..+|+  +++++|+|.|++||+
T Consensus        15 ~~~C~--Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2          15 DHHCH--NHLGGFYCSCRAGYV   34 (45)
T ss_dssp             SSEEE--EETTEEEEECCTTEE
T ss_pred             CCCCc--cCCCCeEEECCCCCe
Confidence            45999  999999999999998

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.00085  Score=42.12  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=18.4

Q ss_pred             CCeEeeCCCCCCeeeeCCCCCc
Q psy11059         76 GATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        76 ~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ..+|+  +++++|+|.|++||+
T Consensus        15 ~~~C~--Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCH--NYLGGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEE--EETTEEEEECCTTEE
T ss_pred             CCEee--cCCCCEEEeCCCCCE
Confidence            34999  999999999999998

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0015  Score=37.81  Aligned_cols=34  Identities=32%  Similarity=0.621  Sum_probs=26.9

Q ss_pred             CCCCCCEeccC--CCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         18 PCQNGGKCNED--ETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        18 ~C~~~g~C~~~--~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      -|+|+|+|+..  ..+-.+|.|+.+|.            |..||+|.+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~------------G~HCEiDt~   38 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFG------------GQHCEIDKS   38 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEE------------STTSCEESS
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccC------------ceeEEeccc
Confidence            58999999941  23345899999999            999998754

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0013  Score=40.45  Aligned_cols=28  Identities=39%  Similarity=0.815  Sum_probs=23.6

Q ss_pred             CCC--CCCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         66 ICT--TAPPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        66 ~C~--~~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ||+  ...+|.+  +|+  +++++|+|.|++||+
T Consensus         2 EC~~~~~~~C~~--~C~--n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2           2 ECTDFVDVPCSH--FCN--NFIGGYFCSCPPEYF   31 (42)
T ss_dssp             TTTC-CCCCSSS--EEE--EETTEEEEECCTTCE
T ss_pred             CCCCCCCcCCCC--Eee--cCCCCEEEeCCCCCE
Confidence            675  2357876  899  999999999999998

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0028  Score=39.71  Aligned_cols=31  Identities=29%  Similarity=0.662  Sum_probs=24.1

Q ss_pred             CCCCCCcEec-cCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCN-EDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~-~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +.|.+ |.|. ......+.|.|++||+|+.|++
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceecCcee
Confidence            57887 6663 3556679999999999999986

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.002  Score=41.17  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             CCCCC-CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         10 SPCDA-QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        10 ~~C~~-~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ++|.. ..+.|.|+|.|.....+.++|.|+.||+            |..||.
T Consensus         6 ~pC~~~~~~yC~nGgcc~~~~~~~~~C~C~~gy~------------G~rCe~   45 (50)
T d1ioxa_           6 SRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYI------------GARCER   45 (50)
T ss_dssp             EECCGGGTTSCTTCCEEEETTTTEEEECCCTTEE------------TTTTCE
T ss_pred             CccCcccCCCccCCeEEEeCCCCCcEeECCCCCe------------eCCCcc
Confidence            45532 4678999999964777889999999999            999983

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0024  Score=36.94  Aligned_cols=32  Identities=38%  Similarity=0.934  Sum_probs=22.7

Q ss_pred             CCCCCEEccC---CCCeeeeCCCCCCCCCCCCCCC
Q psy11059        395 CLHGATCIDE---VATFSCVCPKGLTGRLCETNID  426 (429)
Q Consensus       395 C~~~~~C~~~---~~~~~C~C~~g~~G~~C~~~i~  426 (429)
                      |.++|+|+.-   .+-.+|.|+.+|.|.+||+|.+
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt~   38 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   38 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEeccc
Confidence            6777888642   3345788888888888887654

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0024  Score=40.58  Aligned_cols=39  Identities=18%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             CCCCC-CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         10 SPCDA-QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        10 ~~C~~-~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ++|.. ..+.|.|+|.|.......++|.|++||+            |.+||.
T Consensus         5 ~pC~~~~~~yClnGgcc~~~~~~~~~C~C~~gy~------------G~RCe~   44 (49)
T d1moxc_           5 NDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYV------------GARCEH   44 (49)
T ss_dssp             ECCCCCSSCSSTTEEEEEETTTTEEEEEECTTEE------------STTSCE
T ss_pred             CccCcccCCEeeCCeEEecCCCCCcEeECCCCCE------------ecCCcc
Confidence            45633 3577999998854677789999999999            999983

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0059  Score=38.14  Aligned_cols=33  Identities=24%  Similarity=0.589  Sum_probs=26.7

Q ss_pred             CCCCCCCCCEecc-CCCCceEEecCCCCcccccccccCcCCCCCCCC
Q psy11059         15 QRNPCQNGGKCNE-DETGNYDCTCDALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus        15 ~~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      ..++|.| |.|.. .....+.|.|++||+            |.+|+.
T Consensus        10 ~~~yC~n-G~C~~~~~~~~~~C~C~~gY~------------G~RCe~   43 (46)
T d1k36a_          10 MNGYCLH-GQCIYLVDMSQNYCRCEVGYT------------GVRCEH   43 (46)
T ss_dssp             CCSSCSS-EEEEEETTTTEEEEEECTTCS------------STTSCC
T ss_pred             CCCcCcC-CEEEEeCCCCccEeECCCCce------------ecCcee
Confidence            4679998 77752 556789999999999            999874

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.005  Score=39.30  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=26.6

Q ss_pred             CCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        16 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      ..-|+.  .|+ ++.++|+|.|++||+        ...+|.+|+
T Consensus         6 NGgC~~--~C~-~~~g~~~C~C~~Gy~--------L~~D~~tC~   38 (50)
T d1autl2           6 NGGCTH--YCL-EEVGWRRCSCAPGYK--------LGDDLLQCH   38 (50)
T ss_dssp             GGGCSS--EEE-ECSSSEEEECCTTEE--------ECTTSSCEE
T ss_pred             CCCccc--Eee-cCCCCeEEECCCCCE--------ECCCCCccc
Confidence            334554  898 999999999999999        446788886

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0081  Score=36.37  Aligned_cols=31  Identities=26%  Similarity=0.663  Sum_probs=22.9

Q ss_pred             CCCCCCcEec-cCCCCCeeEeCCCCCcCCCCCC
Q psy11059        233 NPCQNGGKCN-EDETGNYDCTCDALHTGDPCKH  264 (429)
Q Consensus       233 ~~C~~~g~C~-~~~~~~~~C~C~~g~~G~~C~~  264 (429)
                      +-|.+ |+|. ......+.|.|+.||+|..|+.
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CEeEC-cEEeecCcCCCceeECCCCCeecCccc
Confidence            46776 8884 2344567899999999998874

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.23  E-value=0.0055  Score=39.31  Aligned_cols=37  Identities=19%  Similarity=0.427  Sum_probs=28.4

Q ss_pred             CCCCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         15 QRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        15 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      ....|+.  .|+ ++.++|+|.|++||+        ...++.+|+ +++
T Consensus         4 ~NGgC~h--~C~-~~~~~~~C~C~~Gy~--------L~~D~~tC~-~~~   40 (51)
T d1kigl_           4 DNGGCDQ--FCR-EERSEVRCSCAHGYV--------LGDDSKSCV-STE   40 (51)
T ss_dssp             TTTSSSS--CCC-EETTEECCCCCTTEE--------ECTTSSCEE-ECS
T ss_pred             CCCCccc--EeE-cCCCcEEeEcCCCCE--------ECCCCCccc-cCC
Confidence            3445655  588 889999999999999        456788886 555

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.0068  Score=38.84  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=27.4

Q ss_pred             CCCCCCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCCCCCC
Q psy11059         17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPIS   63 (429)
Q Consensus        17 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~~~   63 (429)
                      .-|+.  .|+ +.+++|+|.|++||+        ...++.+|+ +++
T Consensus         8 GgC~h--~C~-n~~g~~~C~C~~Gy~--------L~~D~~tC~-~~~   42 (51)
T d2p3ua1           8 GDCDQ--FCH-EEQNSVVCSCARGYT--------LADNGKACI-PTG   42 (51)
T ss_dssp             GGCSS--EEE-EETTEEEEECCTTEE--------ECTTSSCEE-ESS
T ss_pred             CCccc--Eee-cCCCCeEeEcCCCCE--------ECCCCCccc-cCC
Confidence            34554  798 999999999999999        446788887 443

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.044  Score=34.68  Aligned_cols=32  Identities=16%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             CCCCCCCCCCCCCCCEecc-----CCCCceEEecCCCCc
Q psy11059          9 SSPCDAQRNPCQNGGKCNE-----DETGNYDCTCDALHT   42 (429)
Q Consensus         9 ~~~C~~~~~~C~~~g~C~~-----~~~~~~~C~C~~g~~   42 (429)
                      .|||+....-|+.  .|+.     +..++|+|.|+.||+
T Consensus         4 cneC~~~NGGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2           4 CERTTLSNGGCQY--LCLPAPQINPHSPKFTCACPDGML   40 (50)
T ss_dssp             TSSSSSGGGGCSS--EEEECCCCSTTCCSEEEECCTTCE
T ss_pred             ccccCCCCCCCcC--ccCCCcCcccCCCCEEEeCCCCCE
Confidence            3566433334665  7851     456799999999999

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.016  Score=35.02  Aligned_cols=29  Identities=34%  Similarity=0.902  Sum_probs=21.7

Q ss_pred             CCCCCCCEEc--cCCCCeeeeCCCCCCCCCCC
Q psy11059        393 SPCLHGATCI--DEVATFSCVCPKGLTGRLCE  422 (429)
Q Consensus       393 ~~C~~~~~C~--~~~~~~~C~C~~g~~G~~C~  422 (429)
                      +-|.+ |+|.  .......|+|..||+|.+|+
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CEeEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            34666 7884  34556789999999999987

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.91  E-value=0.026  Score=36.63  Aligned_cols=41  Identities=37%  Similarity=0.948  Sum_probs=28.9

Q ss_pred             CCCCCeeCCccccCCCCCeee-eCCCCccCCCCcccccCCCccCCCC
Q psy11059        300 CLNGGTCKPYLVDETQHRFNC-TCPSGYHGKICEKCFCRPGFAGDHC  345 (429)
Q Consensus       300 C~~~~~C~~~~~~~~~~~~~C-~C~~G~~G~~C~~C~C~~g~~g~~C  345 (429)
                      |.++++|.   .....+.+.| .|+++|.|.+|+  .|.+||+|.-.
T Consensus         3 C~~~~~c~---~~~~~~~~vC~~C~~~~~G~~Ce--~C~~g~yg~P~   44 (55)
T d1kloa1           3 CPGGSSCA---IVPKTKEVVCTHCPTGTAGKRCE--LCDDGYFGDPL   44 (55)
T ss_dssp             SCTTCCEE---ECSSSCCEEECSCCTTEESTTSC--EECTTEEEETT
T ss_pred             CcCCCccc---eeCCCCCEEcCCCCCCCccCccc--ccCCccccCcc
Confidence            44555552   2224556788 699999999999  78889987643

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.79  E-value=0.03  Score=36.29  Aligned_cols=48  Identities=23%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             CCCCCCEecc-CCCCceEE-ecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCeEe
Q psy11059         18 PCQNGGKCNE-DETGNYDC-TCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCR   80 (429)
Q Consensus        18 ~C~~~g~C~~-~~~~~~~C-~C~~g~~g~~~~~~~~~~~G~~C~~~~~~~~C~~~~~C~~~g~C~   80 (429)
                      +|.++++|.. ...+..+| .|..||+            |..|+.-.+  ... .+|...+++|+
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~------------G~~Ce~C~~--g~y-g~P~~~~g~C~   51 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTA------------GKRCELCDD--GYF-GDPLGSNGPVR   51 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEE------------STTSCEECT--TEE-EETTCTTSSCE
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCc------------cCcccccCC--ccc-cCcccCCCcCc
Confidence            6778887753 34567888 5999999            777764333  222 33444444444

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.053  Score=34.29  Aligned_cols=23  Identities=35%  Similarity=0.800  Sum_probs=19.7

Q ss_pred             CCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         71 PPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        71 ~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ..|.+  .|+  +++++|+|.|++||+
T Consensus         7 GgC~~--~C~--~~~g~~~C~C~~Gy~   29 (50)
T d1autl2           7 GGCTH--YCL--EEVGWRRCSCAPGYK   29 (50)
T ss_dssp             GGCSS--EEE--ECSSSEEEECCTTEE
T ss_pred             CCccc--Eee--cCCCCeEEECCCCCE
Confidence            34555  899  899999999999999

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.074  Score=32.20  Aligned_cols=35  Identities=26%  Similarity=0.554  Sum_probs=25.9

Q ss_pred             CCCCCCC-CCCCCCCCEeccCCCCceEEecC-CCCcccccccccCcCCCCCCCC
Q psy11059          9 SSPCDAQ-RNPCQNGGKCNEDETGNYDCTCD-ALHTVCCVGLANQTLGSIHCET   60 (429)
Q Consensus         9 ~~~C~~~-~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~~~~~~~~~G~~C~~   60 (429)
                      .|.|... -..|+.+|+|+     -.+|+|. +||+            |.+||.
T Consensus         2 td~C~~~~g~iCng~G~C~-----cG~C~C~~~gy~------------G~~Ce~   38 (43)
T d1jv2b5           2 TDTCMSSNGLLCSGRGKCE-----CGSCVCIQPGSY------------GDTCEK   38 (43)
T ss_dssp             CSTTCCSSCSGGGGTEEEE-----TTEEEECCSSCB------------STTSCB
T ss_pred             CcccCCCCCCEECCCCEEE-----CCEeEeCCCCcc------------CCcccc
Confidence            4667421 12599999999     5689994 7999            999973

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.96  E-value=0.075  Score=33.71  Aligned_cols=27  Identities=26%  Similarity=0.620  Sum_probs=23.0

Q ss_pred             CCCeeeeCCCCccCCCCcccccCCCccCC
Q psy11059        315 QHRFNCTCPSGYHGKICEKCFCRPGFAGD  343 (429)
Q Consensus       315 ~~~~~C~C~~G~~G~~C~~C~C~~g~~g~  343 (429)
                      ..+..|.|++++.|..|+  .|.+||++.
T Consensus        17 ~~tGqC~Ck~~v~G~~Cd--~C~~g~~~~   43 (51)
T d1kloa3          17 PVTGQCQCLPHVSGRDCG--TCDPGYYNL   43 (51)
T ss_dssp             TTTCCCCBCTTEESTTCC--EECTTCBCG
T ss_pred             CCCCeecCCCCCcCCCcc--cccccccCC
Confidence            345689999999999999  788999875

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.12  Score=30.48  Aligned_cols=32  Identities=25%  Similarity=0.662  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCCCCEeccCCCCceEEecCCCCc
Q psy11059          7 SLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus         7 ~~~~~C~~~~~~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      +.+|+|  ...+|.-  +|..-..++|+|.|..||.
T Consensus         2 e~vDPC--f~~~CE~--qCqP~~~~~Y~CiCaeGFa   33 (43)
T d1dx5i1           2 EPVDPC--FRANCEY--QCQPLDQTSYLCVCAEGFA   33 (43)
T ss_dssp             CCCCGG--GGCCCSS--EEEECSSSCEEEECCTTEE
T ss_pred             cccccc--cCCCcce--eeeeCCCCcceEEeccccc
Confidence            457888  6777876  7884556799999999997

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.058  Score=29.53  Aligned_cols=25  Identities=40%  Similarity=0.872  Sum_probs=17.4

Q ss_pred             CCCCCcEeccCCCCCeeEeCCCCCcCCCCC
Q psy11059        234 PCQNGGKCNEDETGNYDCTCDALHTGDPCK  263 (429)
Q Consensus       234 ~C~~~g~C~~~~~~~~~C~C~~g~~G~~C~  263 (429)
                      .|..+|.|     .-..|+|.+||+|+.|.
T Consensus         4 ~C~ghG~C-----~CG~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           4 MCSGHGQC-----SCGDCLCDSDWTGYYCN   28 (31)
T ss_dssp             CSCCCTTC-----CSTTTCCCTTEESSSSC
T ss_pred             eccCCCcc-----cCCceEccCCccccccc
Confidence            46777777     22357888888888774

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.11  Score=31.15  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=18.8

Q ss_pred             CCCEeccCCCCceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         21 NGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        21 ~~g~C~~~~~~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      .+|+|+     ..+|+|.+||+            |..|+
T Consensus        19 ~hG~C~-----~G~C~C~~Gw~------------G~~Ce   40 (41)
T d1l3ya_          19 GRGLCF-----CGKCRCHPGFE------------GSACQ   40 (41)
T ss_dssp             HHEEEE-----TTEEEECTTCC------------TTTTC
T ss_pred             CCCeEE-----CCEEEcCCCCc------------ccCcc
Confidence            479998     46899999999            88886

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.2  Score=29.95  Aligned_cols=14  Identities=29%  Similarity=0.947  Sum_probs=9.6

Q ss_pred             eEeCCCCCcCCCCC
Q psy11059        250 DCTCDALHTGDPCK  263 (429)
Q Consensus       250 ~C~C~~g~~G~~C~  263 (429)
                      +|.|.+||+|..|+
T Consensus        27 ~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          27 KCRCHPGFEGSACQ   40 (41)
T ss_dssp             EEEECTTCCTTTTC
T ss_pred             EEEcCCCCcccCcc
Confidence            57777777777665

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.19  Score=32.50  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             EeccCCC-CceEEecCCCCcccccccccCcCCCCCCC
Q psy11059         24 KCNEDET-GNYDCTCDALHTVCCVGLANQTLGSIHCE   59 (429)
Q Consensus        24 ~C~~~~~-~~~~C~C~~g~~g~~~~~~~~~~~G~~C~   59 (429)
                      .|+ +.. ++|+|.|++||+        ...+|..|+
T Consensus        13 ~C~-~~~~~~~~C~C~~Gy~--------L~~D~~tC~   40 (57)
T d1rfnb_          13 FCK-NSADNKVVCSCTEGYR--------LAENQKSCE   40 (57)
T ss_dssp             EEE-ECTTSCEEEECCTTEE--------ECTTSSSEE
T ss_pred             Eee-eCCCCCeEeECCCCCE--------ECCCCCccc
Confidence            787 664 589999999999        446788887

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.069  Score=29.24  Aligned_cols=20  Identities=40%  Similarity=0.881  Sum_probs=16.8

Q ss_pred             CCCCCCEeccCCCCceEEecCCCCc
Q psy11059         18 PCQNGGKCNEDETGNYDCTCDALHT   42 (429)
Q Consensus        18 ~C~~~g~C~~~~~~~~~C~C~~g~~   42 (429)
                      .|+++|.|.     =..|.|.+||+
T Consensus         4 ~C~ghG~C~-----CG~C~C~~gw~   23 (31)
T d1jv2b4           4 MCSGHGQCS-----CGDCLCDSDWT   23 (31)
T ss_dssp             CSCCCTTCC-----STTTCCCTTEE
T ss_pred             eccCCCccc-----CCceEccCCcc
Confidence            588889887     45699999999

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.74  E-value=0.088  Score=33.38  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             CCCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         70 APPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        70 ~~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      +..|.+  .|+  ++.++|+|.|++||+
T Consensus         5 NGgC~h--~C~--~~~~~~~C~C~~Gy~   28 (51)
T d1kigl_           5 NGGCDQ--FCR--EERSEVRCSCAHGYV   28 (51)
T ss_dssp             TTSSSS--CCC--EETTEECCCCCTTEE
T ss_pred             CCCccc--EeE--cCCCcEEeEcCCCCE
Confidence            345655  688  889999999999998

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=0.29  Score=30.68  Aligned_cols=30  Identities=27%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             CCC-CCCCCCCCCeEee----CCCCCCeeeeCCCCCc
Q psy11059         66 ICT-TAPPCLNGATCRP----QLTEQLYECVCPPGYK   97 (429)
Q Consensus        66 ~C~-~~~~C~~~g~C~~----~~~~~~~~C~C~~Gy~   97 (429)
                      +|. ....|.+  .|++    +++.++|+|.|++||+
T Consensus         6 eC~~~NGGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2           6 RTTLSNGGCQY--LCLPAPQINPHSPKFTCACPDGML   40 (50)
T ss_dssp             SSSSGGGGCSS--EEEECCCCSTTCCSEEEECCTTCE
T ss_pred             ccCCCCCCCcC--ccCCCcCcccCCCCEEEeCCCCCE
Confidence            554 2345666  7863    2456799999999998

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=0.16  Score=32.05  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=19.8

Q ss_pred             CCCCCCCeEeeCCCCCCeeeeCCCCCc
Q psy11059         71 PPCLNGATCRPQLTEQLYECVCPPGYK   97 (429)
Q Consensus        71 ~~C~~~g~C~~~~~~~~~~C~C~~Gy~   97 (429)
                      ..|.+  .|+  +++++|+|.|++||+
T Consensus         8 GgC~h--~C~--n~~g~~~C~C~~Gy~   30 (51)
T d2p3ua1           8 GDCDQ--FCH--EEQNSVVCSCARGYT   30 (51)
T ss_dssp             GGCSS--EEE--EETTEEEEECCTTEE
T ss_pred             CCccc--Eee--cCCCCeEeEcCCCCE
Confidence            34655  899  899999999999999

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.46  E-value=0.34  Score=31.12  Aligned_cols=27  Identities=30%  Similarity=0.709  Sum_probs=22.5

Q ss_pred             CCCeeee-CCCCccCCCCcccccCCCccCC
Q psy11059        315 QHRFNCT-CPSGYHGKICEKCFCRPGFAGD  343 (429)
Q Consensus       315 ~~~~~C~-C~~G~~G~~C~~C~C~~g~~g~  343 (429)
                      ..++.|+ |++++.|..|+  .|.+||+|.
T Consensus        17 ~~tG~C~~C~~nt~G~~Cd--~C~~G~yg~   44 (56)
T d1kloa2          17 RLTGECLKCIYNTAGFYCD--RCKEGFFGN   44 (56)
T ss_dssp             TTTCCBCCBCTTEETTTTC--EECTTEEEC
T ss_pred             CCCCCCCCCCCCCCCCCcC--cccCCcccC
Confidence            3456894 99999999999  789999985

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.33  Score=29.20  Aligned_cols=25  Identities=40%  Similarity=0.808  Sum_probs=17.1

Q ss_pred             CCCCCEEccCCCCeeeeCC-CCCCCCCCCC
Q psy11059        395 CLHGATCIDEVATFSCVCP-KGLTGRLCET  423 (429)
Q Consensus       395 C~~~~~C~~~~~~~~C~C~-~g~~G~~C~~  423 (429)
                      |..+|+|+-.    +|+|. ++|+|..||+
T Consensus        13 Cng~G~C~cG----~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          13 CSGRGKCECG----SCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGTEEEETT----EEEECCSSCBSTTSCB
T ss_pred             ECCCCEEECC----EeEeCCCCccCCcccc
Confidence            6666777543    67774 5788888874

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=0.36  Score=30.65  Aligned_cols=29  Identities=21%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             EeccCCC-CceEEecCCCCcccccccccCcCCCCCCCCC
Q psy11059         24 KCNEDET-GNYDCTCDALHTVCCVGLANQTLGSIHCETP   61 (429)
Q Consensus        24 ~C~~~~~-~~~~C~C~~g~~g~~~~~~~~~~~G~~C~~~   61 (429)
                      .|+ +.. ++|+|.|+.||+        ...++.+|+..
T Consensus        12 ~C~-~~~~~~~~C~C~~Gy~--------L~~D~~tC~~~   41 (53)
T d2bz6l1          12 YCS-DHTGTKRSCRCHEGYS--------LLADGVSCTPT   41 (53)
T ss_dssp             EEE-EETTTEEEEECCTTEE--------ECTTSSCEEEC
T ss_pred             Eee-eCCCCCEEeECCCCCE--------ECCCCCcccCC
Confidence            687 555 468999999999        44668888743