Psyllid ID: psy11061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS
Secondary Structure (PSIPRED)
cEEEEEEccccccccEEEEccccEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEEccccccEEEcEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEccccccccEEEEccEEEEEEccccccccccEEEEEEEEEEccccccccEEEEEEEEEEcccccccccccEEEEEEEcccccccEEEEEEEEEccccccEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccEEEEEccccEEEEEccccHHHHccEEEEEEEEcccccccEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEccccEEEEEccccHHHcccEEEEEEEEccccccccEEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEEcccccccEcc
Coil and Loop (DISEMBL)
mvnytlgespsrtnhfyMKSVSgeiciaqdldfesrssyefpvvatdrgglsTTAMVRIQItdvndnepifnpveynvslrddIQTTTAFAVVLAtdrdsdrfgtisykivtgkdanlfridrssgelfvtrgnflsrsnsyhinvsamdgggnkcsqdaQVNINIinshmpiplfqqstysfvvpedvfknsivgtikaatsdsgkftefs
Flexible Loop (DISEMBL)
mvnytlgespsrtnHFYMKSVSGEICIAQDLDFESRSSYEFPvvatdrgglsTTAMVRIQitdvndnepiFNPVEYNVSLRDDIQTTTAFAVVLatdrdsdrfgtisykivtgkdanlfridrssgeLFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVgtikaatsdsgkftefs
Low Complexity Region (SEG)
MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS
Disordered region (IsUnstruct)
**************HFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIK*************
Disordered Region (DISOPRED)
MVNYTL*ESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT***
Disordered Region (DISEMBL)
MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAAT**********
Disordered Region (DISPRO)
MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q24292	3503	Protein dachsous OS=Droso	yes	N/A	0.962	0.058	0.507	2e-55
Q96JQ0	3298	Protocadherin-16 OS=Homo	no	N/A	0.938	0.060	0.348	3e-24
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.952	0.040	0.326	6e-22
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	no	N/A	0.952	0.040	0.317	1e-21
Q14517	4588	Protocadherin Fat 1 OS=Ho	no	N/A	0.915	0.042	0.319	1e-21
O35161	3034	Cadherin EGF LAG seven-pa	no	N/A	0.882	0.061	0.326	3e-19
Q8R508	4555	Protocadherin Fat 3 OS=Ra	no	N/A	0.929	0.043	0.331	4e-19
Q9HCU4	2923	Cadherin EGF LAG seven-pa	no	N/A	0.877	0.063	0.345	4e-19
Q99PF4	3354	Cadherin-23 OS=Mus muscul	no	N/A	0.858	0.054	0.356	7e-19
Q6V1P9	2916	Protocadherin-23 OS=Homo	no	N/A	0.584	0.042	0.384	1e-18

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 151/211 (71%), Gaps = 7/211 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYT+GE       F ++S SGEICIA +LDFE RSSYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 592 MVNYTIGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQ 651

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQ-----TTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EY VSLR+  +     ++T    V+ATD D   FG +SY+IV G +
Sbjct: 652 LTDVNDNRPVFYPREYKVSLRESPKASSQASSTPIVAVVATDPDYGNFGQVSYRIVAGNE 711

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
           A +FRIDRS+GE+FV R + LS R+   H +N+SA DGG  + + DA V ++II++    
Sbjct: 712 AGIFRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNLRSNADAVVFLSIIDAMQRP 771

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
           P+F+++ Y++ V ED+ + ++VG++ AA+ D
Sbjct: 772 PIFEKARYNYYVKEDIPRGTVVGSVIAASGD 802

Involved in morphogenesis. May also be involved in cell adhesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 5/204 (2%)

Query: 1   MVNYTLGES--PSRTNHFYMKSVSGEICIAQDLDF-ESRSSYEFPVVATDRGGLSTTAMV 57
           +++Y+LG     S +  F + + SG++C  + LD  +  SS++F V A D GGL +   V
Sbjct: 612 LLSYSLGAGLGSSGSPPFRIDAHSGDVCTTRTLDRDQGPSSFDFTVTAVDGGGLKSMVYV 671

Query: 58  RIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDAN 117
           ++ ++D NDN P F P EY  S+       TA   + A D D    G +SY I+ G    
Sbjct: 672 KVFLSDENDNPPQFYPREYAASISAQSPPGTAVLRLRAHDPDQGSHGRLSYHILAGNSPP 731

Query: 118 LFRIDRSSGELFVTRGNFLSRSNS-YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLF 176
           LF +D  SG L         R+NS   + + A DGGG +    A+V+I+I+      P+F
Sbjct: 732 LFTLDEQSG-LLTVAWPLARRANSVVQLEIGAEDGGGLQAEPSARVDISIVPGTPTPPIF 790

Query: 177 QQSTYSFVVPEDVFKNSIVGTIKA 200
           +Q  Y F VPEDV   + VG ++A
Sbjct: 791 EQLQYVFSVPEDVAPGTSVGIVQA 814

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRI 59
           V ++L E+ +    F +  VSG +  A  LD E ++ Y   ++ATD G    S+TA V +
Sbjct: 618 VRFSLQEAENDQRLFRLDPVSGRLSTASSLDREEQAFYCLSILATDLGSPPQSSTAQVNV 677

Query: 60  QITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLF 119
            + D+NDN P+F PV+Y   ++++    +    V ATD D    GT+ Y I  G D + F
Sbjct: 678 SLLDINDNSPVFYPVQYFAHIQENEPGGSYVTTVSATDPDMGPNGTVKYSISAG-DRSRF 736

Query: 120 RIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQS 179
           +I   SG +            +Y + V A DGG  +    A V + ++++    P+F Q+
Sbjct: 737 QIHAKSGVISTKMALDREEKTAYQLQVVATDGGNLQSPNQAIVTVTVLDTQDNPPVFSQA 796

Query: 180 TYSFVVPEDVFKNSIVGTIKAATSD 204
            YSFVV E+V     VG++ A T D
Sbjct: 797 AYSFVVFENVALGYHVGSVSATTMD 821

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
           V ++L E+ +    F +  VSG +     LD E ++ Y   V+ATD G    ++M RI +
Sbjct: 618 VRFSLQEAETDRRSFRLDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINV 677

Query: 62  T--DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLF 119
           +  D+NDN P+F PV+Y   ++++    +    V ATD D    GT+ Y I  G D + F
Sbjct: 678 SLLDINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPDLGTNGTVKYSISAG-DRSRF 736

Query: 120 RIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQS 179
           +++  SG +            +Y + + A DGG  +    A V I ++++    P+F Q 
Sbjct: 737 QVNAQSGVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQV 796

Query: 180 TYSFVVPEDVFKNSIVGTIKAATSD 204
            YSFVV E+V     VG++ A+T D
Sbjct: 797 AYSFVVFENVALGYHVGSVSASTMD 821

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 11   SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG---GLSTTAMVRIQITDVNDN 67
            S    F +  +SG I + + LD E ++ Y   + A D+G    L+ T  V + + D+NDN
Sbjct: 3167 SADGQFSINELSGIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDN 3226

Query: 68   EPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGE 127
             P+F   EY  ++ +DI   T    V A  RD +    I+Y I++G +   F ID  +G 
Sbjct: 3227 PPVFEYREYGATVSEDILVGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGA 3286

Query: 128  LFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPE 187
            +F+        S+ Y++ V A DGG    S  A VN+N+ + +   P+F Q TY+ V+ E
Sbjct: 3287 VFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVISE 3346

Query: 188  DVFKNSIVGTIKAATSD 204
            D      V T+ A  +D
Sbjct: 3347 DAVLEQSVITVMADDAD 3363

Plays an essential role for cellular polarization, directed cell migration and modulating cell-cell contact.

Homo sapiens (taxid: 9606)

>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus GN=Celsr1 PE=2 SV=3

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPIFNP 73
           F + + SG I +  +LD E    Y F V A D G   +S++A V I + DVNDN+P+F  
Sbjct: 645 FQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPAMSSSASVSITVLDVNDNDPMFTQ 704

Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRG 133
             Y + L +D    ++   + A DRD++    I+Y++  G   N F +   SG   +T  
Sbjct: 705 PVYELRLNEDAAVGSSVLTLRARDRDAN--SVITYQLTGGNTRNRFALSSQSGGGLITLA 762

Query: 134 NFL--SRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFK 191
             L   +   Y + V+A DG     S  AQV IN+ +++   P+FQ S Y+  V ED   
Sbjct: 763 LPLDYKQERQYVLAVTASDGTR---SHTAQVFINVTDANTHRPVFQSSHYTVSVSEDRPV 819

Query: 192 NSIVGTIKAATSDSGK 207
            + + TI A   D+G+
Sbjct: 820 GTSIATISATDEDTGE 835

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 13   TNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPI 70
            T++F++ S SG I  A+ LD E        V ATD G   LS+  +V+I I+DVNDN P+
Sbjct: 2333 TDYFHIDSSSGLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPV 2392

Query: 71   FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFV 130
            FN + Y   + +          V A+D DS  F  + Y I++G D   F +D  SG L +
Sbjct: 2393 FNQLIYESYVSELAPRGHFVTCVQASDADSSDFDRLEYSILSGNDRTSFLMDSKSGVLTL 2452

Query: 131  TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVF 190
            +          Y +NVS  DG     +  AQV+I ++ +++  P F QSTY   V E+  
Sbjct: 2453 SSHRKQRMEPLYSLNVSVSDG---LFTSTAQVHIRVLGANLYSPAFSQSTYVAEVRENAA 2509

Query: 191  KNSIVGTIKAATSDSGKFTEFS 212
              + V  ++A   D G + + S
Sbjct: 2510 SGTKVIHVRATDGDPGTYGQVS 2531

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Rattus norvegicus (taxid: 10116)

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPIFNP 73
           F + + +G I +A +LD E    Y F V A D G   L+ +A V + + DVNDN P F  
Sbjct: 553 FTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQ 612

Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRG 133
            EY V L +D    T+   V A DRD+     I+Y+I +G   N F I   SG   V+  
Sbjct: 613 PEYTVRLNEDAAVGTSVVTVSAVDRDAH--SVITYQITSGNTRNRFSITSQSGGGLVSLA 670

Query: 134 NFLSR--SNSYHINVSAMDGGGNKCSQD-AQVNINIINSHMPIPLFQQSTYSFVVPEDVF 190
             L       Y + V+A DG      QD AQ+ +N+ +++   P+FQ S Y+  V ED  
Sbjct: 671 LPLDYKLERQYVLAVTASDG----TRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRP 726

Query: 191 KNSIVGTIKAATSDSGK 207
             + V  I A   D+G+
Sbjct: 727 AGTTVVLISATDEDTGE 743

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q99PF4|CAD23_MOUSE Cadherin-23 OS=Mus musculus GN=Cdh23 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 23   GEICIAQDLDFESRSSYEFPVVATDRGGLSTTA--MVRIQITDVNDNEPIF-NPVEYNVS 79
            GE+ +A+ LD E    Y   VVA+DRG        ++++ I DVNDN P+  +P  YNVS
Sbjct: 1477 GEVFVAKPLDREELDHYILKVVASDRGTPPRKKDHILQVTILDVNDNPPVIESPFGYNVS 1536

Query: 80   LRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNF--LS 137
            + +++   T+   V ATDRD      +SY I  G +   FR+DR SGE+  TR       
Sbjct: 1537 VNENVGGGTSVVQVRATDRDIGINSVLSYYITEGNEDMTFRMDRISGEI-ATRPAPPDRE 1595

Query: 138  RSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPE--DVFKNSIV 195
            R N YH+ V+  D G    S    V + I++ +   P+FQQ  Y  V+ E  D    S++
Sbjct: 1596 RQNFYHLVVTVEDEGTPTLSATTHVYVTIVDENDNAPVFQQPHYEVVLDEGPDTINTSLI 1655

Query: 196  GTIKAATSDSG 206
             T++A   D G
Sbjct: 1656 -TVQALDLDEG 1665

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells. CDH23 is required for establishing and/or maintaining the proper organization of the stereocilia bundle of hair cells in the cochlea and the vestibule during late embryonic/early postnatal development. It is part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.

Mus musculus (taxid: 10090)

>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 14/138 (10%)

Query: 16  FYMKSVSGEICIAQDLDFE-SRSSYEFPVVATD------------RGGLSTTAMVRIQIT 62
           F +    G+IC++QD+D E   ++Y+  V A D            +GGLS  A VR+ + 
Sbjct: 109 FRIDPHDGQICVSQDIDRERDPATYDLLVEAKDGDEQRMTHLALVKGGLSAQAFVRVDLE 168

Query: 63  DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID 122
           DVNDN P+FNP  Y  S+ D+ Q  T    VLATD+DS  +GT++Y+++ G  ++LF ID
Sbjct: 169 DVNDNHPVFNPSTYVTSISDETQPGTEIINVLATDQDSGIYGTVAYELIPGNVSSLFTID 228

Query: 123 RSSGELFVTRGNFLSRSN 140
            ++G L+      LS  N
Sbjct: 229 STTG-LYSPEVEILSAVN 245

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
157108477	3131	cadherin [Aedes aegypti] gi|108884003|gb	0.971	0.065	0.551	1e-60
158297323	2864	AGAP007905-PA [Anopheles gambiae str. PE	0.971	0.071	0.547	3e-60
170031843	2888	cadherin [Culex quinquefasciatus] gi|167	0.933	0.068	0.558	1e-58
198475184	3586	GA26057 [Drosophila pseudoobscura pseudo	0.971	0.057	0.530	3e-56
270006362	3474	dachsous [Tribolium castaneum]	0.971	0.059	0.559	4e-56
195388388	3639	GJ19658 [Drosophila virilis] gi|19414931	0.976	0.056	0.514	1e-55
195118208	2980	GI18019 [Drosophila mojavensis] gi|19391	0.976	0.069	0.509	1e-55
195159445	1812	GL15349 [Drosophila persimilis] gi|19411	0.971	0.113	0.525	2e-55
194758613	3563	GF14875 [Drosophila ananassae] gi|190615	0.971	0.057	0.516	3e-55
195032868	3594	GH10500 [Drosophila grimshawi] gi|193904	0.976	0.057	0.509	7e-55

>gi|157108477|ref|XP_001650243.1| cadherin [Aedes aegypti] gi|108884003|gb|EAT48228.1| AAEL000700-PA [Aedes aegypti]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 159/212 (75%), Gaps = 6/212 (2%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE   +   F ++S +GE+CIA +LD+E+R+SYEFP++ATDRGGLSTTAMV+IQ
Sbjct: 273 MVNYTLGEGYKKITEFEIRSSTGEVCIAAELDYETRNSYEFPIIATDRGGLSTTAMVKIQ 332

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQT----TTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
           +TDVNDN P F P EYNVSLR+ + T    +T   V++ATD DS  FGTISY+IV G +A
Sbjct: 333 LTDVNDNRPTFYPREYNVSLRESMPTNSLLSTPVVVIVATDSDSGSFGTISYRIVAGNEA 392

Query: 117 NLFRIDRSSGELFVTRGNFL-SRSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
            +FR+DR +GE+FV R N L SRS  YH +N+SA DGGG + + DA+V I++I++    P
Sbjct: 393 GIFRMDRLTGEIFVARPNMLSSRSQPYHRLNISASDGGGLRSTHDAEVFISVIDATQRPP 452

Query: 175 LFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           +F +  Y++ V EDV KN++VGT+ A +S+SG
Sbjct: 453 IFDKPRYTYYVKEDVKKNTVVGTVSATSSNSG 484

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297323|ref|XP_317578.4| AGAP007905-PA [Anopheles gambiae str. PEST] gi|157015140|gb|EAA12903.4| AGAP007905-PA [Anopheles gambiae str. PEST]

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 159/212 (75%), Gaps = 6/212 (2%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE   +   F ++  +GE+CIA +LD+E+R+SYEFP++ATDRGGLSTTAMV+IQ
Sbjct: 13  MVNYTLGEGYKKNAEFEIRPSTGEVCIASELDYETRNSYEFPIIATDRGGLSTTAMVKIQ 72

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQT----TTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
           +TDVNDN P F P EYNVSLR+ + T    +T   VV+ATD DS  FGTISY+IV G +A
Sbjct: 73  LTDVNDNRPTFYPREYNVSLRESMPTNSLLSTPVVVVVATDSDSGSFGTISYRIVAGNEA 132

Query: 117 NLFRIDRSSGELFVTRGNFL-SRSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
            +FR+DR +GE+FVTR N L SR+  YH +N+SA DGGG + + DA+V I++I++    P
Sbjct: 133 GIFRMDRLTGEIFVTRPNMLSSRTQPYHRLNISASDGGGLRSTHDAEVFISVIDATQRPP 192

Query: 175 LFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           +F +  Y++ V EDV +N++VGT+ A +S+SG
Sbjct: 193 IFDKPRYTYYVKEDVKRNTVVGTVSATSSNSG 224

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031843|ref|XP_001843793.1| cadherin [Culex quinquefasciatus] gi|167871192|gb|EDS34575.1| cadherin [Culex quinquefasciatus]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 153/204 (75%), Gaps = 6/204 (2%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE   +   F ++S +GE+CIA +LD+E+R+SYEFP++ATDRGGLSTTAMV+IQ
Sbjct: 55  MVNYTLGEGYKKITEFEVRSSTGEVCIAAELDYETRNSYEFPIIATDRGGLSTTAMVKIQ 114

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQT----TTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
           +TDVNDN P F P EYNVSLR+ + T    +T   VV+ATD DS  FGTISY+IV G +A
Sbjct: 115 LTDVNDNRPTFYPREYNVSLRESMPTNSLLSTPVVVVVATDSDSGNFGTISYRIVAGNEA 174

Query: 117 NLFRIDRSSGELFVTRGNFL-SRSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
            +FR+DR +GE+FV R N L SRS  YH +N+SA DGGG + + DA+V I++I++    P
Sbjct: 175 GIFRMDRLTGEIFVARPNMLSSRSQPYHRLNISASDGGGLRSTHDAEVFISVIDATQRPP 234

Query: 175 LFQQSTYSFVVPEDVFKNSIVGTI 198
           +F +  Y++ V EDV KN++VGT+
Sbjct: 235 IFDKPRYTYYVKEDVKKNTVVGTV 258

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475184|ref|XP_002132853.1| GA26057 [Drosophila pseudoobscura pseudoobscura] gi|198138709|gb|EDY70255.1| GA26057 [Drosophila pseudoobscura pseudoobscura]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 153/213 (71%), Gaps = 7/213 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE       F ++S SGEICIA +LDFE RSSYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 644 MVNYTLGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQ 703

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQTTTAFA-----VVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSL++   T T  A      V+ATD DS  FG +SY+IV G +
Sbjct: 704 LTDVNDNRPVFYPREYNVSLKESPPTQTPAASIPVVAVVATDPDSGSFGQVSYRIVAGNE 763

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
           A +FRIDRSSGE+FVTR + LS R+   H +N+SA DGGG +   DA V ++II++    
Sbjct: 764 AGIFRIDRSSGEIFVTRPDSLSVRTQPMHMLNISATDGGGLRTGHDAVVFLSIIDALQRP 823

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           P+F+++ Y++ V ED+ + ++VG++ A + D+ 
Sbjct: 824 PIFEKARYNYYVKEDIPQGTVVGSVIATSGDTA 856

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006362|gb|EFA02810.1| dachsous [Tribolium castaneum]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 150/211 (71%), Gaps = 5/211 (2%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE   +   F ++S +GE+CI   LD+E+R+ YEFPVVATDRGGLSTTAMV+IQ
Sbjct: 637 MVNYTLGEGFGKLKEFEVRSATGEVCITSSLDYETRNVYEFPVVATDRGGLSTTAMVKIQ 696

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQTTT---AFAVVLATDRDSDRFGTISYKIVTGKDAN 117
           +TDVNDN P+F P  YNVSLR+   +++      VV  TD DS RFGT++YKIV G DA 
Sbjct: 697 VTDVNDNRPVFYPRVYNVSLREGGASSSATTPVVVVATTDPDSGRFGTVTYKIVAGNDAG 756

Query: 118 LFRIDRSSGELFVTRGNFL-SRSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPIPL 175
           LFRID++SGE+FV R N L SRS  YH +N+SA DGG  K   DA+V I++I+S    P+
Sbjct: 757 LFRIDKNSGEIFVNRPNLLSSRSQPYHRLNISATDGGNLKSLADAEVFISVIDSAQRPPI 816

Query: 176 FQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           F+   Y++ V EDV K +IVG +KA   DSG
Sbjct: 817 FEHPRYTYSVKEDVRKETIVGNVKATVRDSG 847

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388388|ref|XP_002052862.1| GJ19658 [Drosophila virilis] gi|194149319|gb|EDW65017.1| GJ19658 [Drosophila virilis]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 154/214 (71%), Gaps = 7/214 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE       F ++S SGEICIA +LD+E R+SYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 667 MVNYTLGEGFKHLTEFEVRSASGEICIAGELDYERRNSYEFPVLATDRGGLSTTAMIKLQ 726

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQ-----TTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSLR+        T      V+ATD D+  FG +SY+IV G +
Sbjct: 727 LTDVNDNRPVFYPREYNVSLRESGPAQAGGTPMPIVAVVATDPDAGSFGQVSYRIVAGNE 786

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
           A +FRIDR+SGE+FV R + LS R+ + H +N+SA DGGG + S DA V ++II++    
Sbjct: 787 AGIFRIDRASGEIFVIRPDMLSVRTQAMHMLNISATDGGGLRTSTDAVVFLSIIDAQQRP 846

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
           P+F+++ Y++ V EDV + ++VG++ A +SD+ +
Sbjct: 847 PIFEKARYNYYVKEDVPRGTVVGSVIATSSDTAQ 880

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118208|ref|XP_002003632.1| GI18019 [Drosophila mojavensis] gi|193914207|gb|EDW13074.1| GI18019 [Drosophila mojavensis]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 155/214 (72%), Gaps = 7/214 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYT+GE       F ++S SGEICIA +LD+E R+SYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 1   MVNYTIGEGFKHLTEFEVRSASGEICIAGELDYERRNSYEFPVLATDRGGLSTTAMIKLQ 60

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQ-----TTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSLR+        ++     V+ATD D+  FG +SY+IV G +
Sbjct: 61  LTDVNDNRPVFYPREYNVSLRESGPAQGSGSSMPIVAVVATDPDAGSFGQVSYRIVAGNE 120

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYHI-NVSAMDGGGNKCSQDAQVNINIINSHMPI 173
             +FRIDR+SGE+FV R + LS R+ + HI N+SA DGGG + S DA V ++II++    
Sbjct: 121 GGIFRIDRASGEIFVVRPDMLSVRTQAMHILNISATDGGGLRTSTDAVVFLSIIDAMQRP 180

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
           P+F+++ Y++ V EDV +N++VG++ A +SD+ +
Sbjct: 181 PIFEKARYNYYVKEDVPRNTVVGSVIATSSDTAQ 214

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159445|ref|XP_002020589.1| GL15349 [Drosophila persimilis] gi|194117539|gb|EDW39582.1| GL15349 [Drosophila persimilis]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 152/213 (71%), Gaps = 7/213 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE       F ++S SGEICIA +LDFE RSSYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 634 MVNYTLGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQ 693

Query: 61  ITDVNDNEPIFNPVEYNVSLRDDIQTTTAFA-----VVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSL++     T  A      V+ATD DS  FG +SY+IV G +
Sbjct: 694 LTDVNDNRPVFYPREYNVSLKESPPAQTPAASIPVVAVVATDPDSGSFGQVSYRIVAGNE 753

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
           A +FRIDRSSGE+FVTR + LS R+   H +N+SA DGGG +   DA V ++II++    
Sbjct: 754 AGIFRIDRSSGEIFVTRPDSLSVRTQPTHMLNISATDGGGLRTGHDAVVFLSIIDALQRP 813

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           P+F+++ Y++ V ED+ + ++VG++ A + D+ 
Sbjct: 814 PIFEKARYNYYVKEDIPQGTVVGSVIATSGDTA 846

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758613|ref|XP_001961556.1| GF14875 [Drosophila ananassae] gi|190615253|gb|EDV30777.1| GF14875 [Drosophila ananassae]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 153/213 (71%), Gaps = 7/213 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE       F ++S SGEICIA +LDFE RSSYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 642 MVNYTLGEGFKHLTEFEVRSASGEICIAGELDFEKRSSYEFPVIATDRGGLSTTAMIKMQ 701

Query: 61  ITDVNDNEPIFNPVEYNVSLRD-----DIQTTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSL++        ++     V+ATD DS  FG +SY+IV+G D
Sbjct: 702 LTDVNDNRPVFYPREYNVSLKESSQSPAQSSSAPVVAVVATDPDSGTFGKVSYRIVSGND 761

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
           A +FRIDRSSGE+FV R + LS R+   H +N+SA+DG G + S DA V ++II++    
Sbjct: 762 AGIFRIDRSSGEIFVARPDMLSVRAQPTHMLNISAIDGAGLRSSSDAVVFLSIIDAMQRP 821

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           P+F+++ Y++ V ED+ + ++VG++ A + D+ 
Sbjct: 822 PIFEKARYNYYVKEDIPRGTVVGSVIATSGDTA 854

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195032868|ref|XP_001988576.1| GH10500 [Drosophila grimshawi] gi|193904576|gb|EDW03443.1| GH10500 [Drosophila grimshawi]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 152/214 (71%), Gaps = 7/214 (3%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
           MVNYTLGE       F ++S SGEICIA +LD+E R+SYEFPV+ATDRGGLSTTAM+++Q
Sbjct: 633 MVNYTLGEGFKHLTEFEVRSASGEICIAGELDYERRNSYEFPVLATDRGGLSTTAMIKLQ 692

Query: 61  ITDVNDNEPIFNPVEYNVSLRDD-----IQTTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
           +TDVNDN P+F P EYNVSLR+        T      V+ATD D+  FG +SY+IV G +
Sbjct: 693 LTDVNDNRPVFYPREYNVSLRESGPAQASSTPMPIVAVVATDPDAGSFGQVSYRIVAGNE 752

Query: 116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
             +FRIDR+SGE+FV R + LS R+   H +N+SA DGGG + S DA V ++II++    
Sbjct: 753 GGIFRIDRASGEIFVIRQDMLSVRTQPMHMLNISATDGGGLRTSTDAVVFLSIIDAMQRP 812

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
           P+F+++ Y++ V EDV + ++VG++ A +SD+ +
Sbjct: 813 PIFEKARYNYYVKEDVPRGTVVGSVIATSSDTAQ 846

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
FB|FBgn0000497	3503	ds "dachsous" [Drosophila mela	0.962	0.058	0.507	6e-50
ZFIN|ZDB-GENE-090313-302	1204	si:dkey-30k22.7 "si:dkey-30k22	0.882	0.155	0.377	3e-31
UNIPROTKB|E9PC11	1369	DCHS2 "Protocadherin-23" [Homo	0.839	0.130	0.407	2.1e-30
UNIPROTKB|F1NB81	2475	F1NB81 "Uncharacterized protei	0.938	0.080	0.333	7.9e-28
UNIPROTKB|E1C566	2926	E1C566 "Uncharacterized protei	0.933	0.067	0.320	5e-27
WB|WBGene00019994	2779	cdh-1 [Caenorhabditis elegans	0.900	0.068	0.331	2.8e-26
UNIPROTKB|F1LY95	3251	F1LY95 "Uncharacterized protei	0.948	0.061	0.363	3.3e-26
ZFIN|ZDB-GENE-050208-41	3286	dchs1b "dachsous 1b (Drosophil	0.943	0.060	0.336	3.4e-26
UNIPROTKB|E1B969	3296	DCHS1 "Uncharacterized protein	0.943	0.060	0.359	1.7e-24
UNIPROTKB|I3LUS1	3297	DCHS1 "Uncharacterized protein	0.938	0.060	0.362	1.7e-24

FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)]

 Score = 538 (194.4 bits), Expect = 6.0e-50, P = 6.0e-50
 Identities = 107/211 (50%), Positives = 151/211 (71%)

Query:     1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
             MVNYT+GE       F ++S SGEICIA +LDFE RSSYEFPV+ATDRGGLSTTAM+++Q
Sbjct:   592 MVNYTIGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQ 651

Query:    61 ITDVNDNEPIFNPVEYNVSLRDDIQ-----TTTAFAVVLATDRDSDRFGTISYKIVTGKD 115
             +TDVNDN P+F P EY VSLR+  +     ++T    V+ATD D   FG +SY+IV G +
Sbjct:   652 LTDVNDNRPVFYPREYKVSLRESPKASSQASSTPIVAVVATDPDYGNFGQVSYRIVAGNE 711

Query:   116 ANLFRIDRSSGELFVTRGNFLS-RSNSYH-INVSAMDGGGNKCSQDAQVNINIINSHMPI 173
             A +FRIDRS+GE+FV R + LS R+   H +N+SA DGG  + + DA V ++II++    
Sbjct:   712 AGIFRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNLRSNADAVVFLSIIDAMQRP 771

Query:   174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
             P+F+++ Y++ V ED+ + ++VG++ AA+ D
Sbjct:   772 PIFEKARYNYYVKEDIPRGTVVGSVIAASGD 802

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0004872 "receptor activity" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

ZFIN|ZDB-GENE-090313-302 si:dkey-30k22.7 "si:dkey-30k22.7" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 3.0e-31, P = 3.0e-31
 Identities = 71/188 (37%), Positives = 115/188 (61%)

Query:    16 FYMKSVSGEICIAQDLDFESRS-SYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPV 74
             F++ SV+G IC++QD+D+E+   +++  + A D+ G S+   V I I DVNDN P+FNP 
Sbjct:   588 FHINSVTGNICVSQDIDYEAGLLTFDLLIKAEDQDGFSSQTFVHIGIEDVNDNAPVFNPG 647

Query:    75 EYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGN 134
             +Y  S+    Q  T    V A+D+D+  +G I+Y++  G  A LF +D+S+G ++++   
Sbjct:   648 KYVTSVSVHAQPGTELLNVYASDQDAGNYGKITYELQPGDSATLFTMDQSTGSVYLSSSL 707

Query:   135 FLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSI 194
                RS+S  ++VSA DGGG   +  A + +NI+ S  P  LFQ++ Y+F + ED    S 
Sbjct:   708 MQLRSSSVKLSVSARDGGGMSAAYPANITVNILQSDQPPALFQKAQYTFSISEDAPVGSS 767

Query:   195 VGTIKAAT 202
             VG ++A T
Sbjct:   768 VGLVQAIT 775

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PC11 DCHS2 "Protocadherin-23" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 73/179 (40%), Positives = 113/179 (63%)

Query:    23 GEICIAQDLDFE-SRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLR 81
             G+IC++QD+D E   ++Y+  V A D GGLS  A VR+ + DVNDN P+FNP  Y  S+ 
Sbjct:   722 GQICVSQDIDRERDPATYDLLVEAKDGGGLSAQAFVRVDLEDVNDNHPVFNPSTYVTSIS 781

Query:    82 DDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNS 141
             D+ Q  T    VLATD+DS  +GT++Y+++ G  ++LF ID ++G +++T       S +
Sbjct:   782 DETQPGTEIINVLATDQDSGIYGTVAYELIPGNVSSLFTIDSTTGIIYLTLPLSHLESTT 841

Query:   142 YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKA 200
               + VSA DGGG     +A V I+I  + +    F++  Y+F+V EDV ++S +GT+KA
Sbjct:   842 LSLMVSAQDGGGLTAVINADVTIHIFQTTLAPAEFERPKYTFLVYEDVPEDSPIGTVKA 900

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NB81 F1NB81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 7.9e-28, P = 7.9e-28
 Identities = 68/204 (33%), Positives = 117/204 (57%)

Query:     2 VNYTLGESPSRT--NHFYMKSVSGEICIAQDLDF-ESRSSYEFPVVATDRGGLSTTAMVR 58
             ++Y+LG          F +   +G +C  Q LD  E  S+Y+F + A D GGL++   V+
Sbjct:   596 LSYSLGSGIGSVVPTQFSIDKHTGHLCTTQPLDRDEGTSAYDFTITAVDGGGLNSMVYVK 655

Query:    59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANL 118
             + + D+NDN P+F P++Y  S+       TA   V A D+D    G ++Y+IV G    L
Sbjct:   656 VFLEDINDNRPVFYPLDYAASISTQSMPGTAVLRVTAHDKDEGMHGKVTYRIVLGNSPPL 715

Query:   119 FRIDRSSGELFVTRGNFLS-RSNSY-HINVSAMDGGGNKCSQDAQVNINIINSHMPIPLF 176
             F +++ +GE  ++    LS ++N+   + +SA DGGG +   +A+VNI+++   +  P+F
Sbjct:   716 FSLNKDTGESVISLSWSLSGKANTLVQLVISAEDGGGLQAQPNARVNISVVEGTVSPPVF 775

Query:   177 QQSTYSFVVPEDVFKNSIVGTIKA 200
             +Q+ Y F VPED+ + + VG ++A
Sbjct:   776 EQAQYFFTVPEDMLQGASVGAVRA 799

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C566 E1C566 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 5.0e-27, Sum P(2) = 5.0e-27
 Identities = 65/203 (32%), Positives = 116/203 (57%)

Query:     2 VNYTLGESPSRT--NHFYMKSVSGEICIAQDLDF-ESRSSYEFPVVATDRGGLSTTAMVR 58
             ++Y+LG          F +   +G +C  Q LD  E  S+Y+F + A D GGL++   V+
Sbjct:   590 LSYSLGSGIGSVVPTQFSIDKHTGHLCTTQPLDRDEGTSAYDFTITAVDGGGLNSMVYVK 649

Query:    59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANL 118
             + + D+NDN P+F P++Y  S+       TA   V A D+D    G ++Y+IV G    L
Sbjct:   650 VFLEDINDNRPVFYPLDYAASISTQSMPGTAVLRVTAHDKDEGMHGKVTYRIVLGNSPPL 709

Query:   119 FRIDRSSGELFVTRGNFLSRSNSY-HINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ 177
             F +++ +G + ++  +   ++N+   + +SA DGGG +   +A+VNI+++   +  P+F+
Sbjct:   710 FSLNKDTGVISLS-WSLSGKANTLVQLVISAEDGGGLQAQPNARVNISVVEGTVSPPVFE 768

Query:   178 QSTYSFVVPEDVFKNSIVGTIKA 200
             Q+ Y F VPED+ + + VG ++A
Sbjct:   769 QAQYFFTVPEDMLQGASVGAVRA 791

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00019994 cdh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 314 (115.6 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 66/199 (33%), Positives = 115/199 (57%)

Query:     2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
             + Y+L    ++  H  + ++SG +CI +  DFE + SY+  V+AT+    ++T+++ I++
Sbjct:   575 IRYSL---QNQDEHLTVDTMSGTVCIQKTFDFEKQKSYQTTVIATNANSETSTSLISIRL 631

Query:    62 TDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRI 121
              DVNDN PIF P EY++++R+  +      VV A+D DS  FG +SY I++  +++ F I
Sbjct:   632 KDVNDNWPIFYPNEYHLTVREGPKPEEPLLVVSASDMDSGTFGEVSYHILS--ESSSFSI 689

Query:   122 DRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTY 181
             +  +GE+F  +   L+R   +H+ VSA DGGG      A ++I +I+     P F +S Y
Sbjct:   690 NPVTGEVFAQKP--LARGR-FHLVVSAKDGGGQSSENSANIHITVIDKDTKTPQFSRSKY 746

Query:   182 SFVVPEDVFKNSIVGTIKA 200
                  ED+     +G++ A
Sbjct:   747 EIRTTEDILPGIAIGSVGA 765

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

UNIPROTKB|F1LY95 F1LY95 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 76/209 (36%), Positives = 118/209 (56%)

Query:     1 MVNYTL--G-ESPSRTNHFYMKSVSGEICIAQDLDFE-SRSSYEFPVVATDRGGLSTTAM 56
             +V Y+L  G +S      F +    G IC++QD+D E    +++  V A D GGLS  A 
Sbjct:   617 LVQYSLYDGFQSYEAPPAFQIDPQDGRICVSQDIDRERDPGTFDLLVKAKDGGGLSAQAF 676

Query:    57 VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
             VR+++ DVNDN P+FNP  Y  S+       T    VLA+DRDS  +GT++Y+++ G  +
Sbjct:   677 VRVEVEDVNDNYPVFNPSTYVTSISGQTPPGTEIINVLASDRDSGIYGTVAYELIPGDQS 736

Query:   117 NLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
             +LF ID ++   F   G  L    +N   + V A DGGG   + +A V I++  + +   
Sbjct:   737 SLFTIDSTTVIAF--EGWDLKEGITNFIQLMVCARDGGGLTAANNADVTIHVTQTTLAPA 794

Query:   175 LFQQSTYSFVVPEDVFKNSIVGTIKAATS 203
              F++  Y+F V EDV ++++VGT+KA  S
Sbjct:   795 EFERPKYTFSVYEDVPEDTLVGTVKARES 823

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050208-41 dchs1b "dachsous 1b (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 314 (115.6 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 69/205 (33%), Positives = 118/205 (57%)

Query:     2 VNYTLGESP--SRTNHFYMKSVSGEICIAQDLDF-ESRSSYEFPVVATDRGGLSTTAMVR 58
             + Y++G     +  + F +   SG+IC +  LD  E   S+ F V ATD GGLS++A V 
Sbjct:   591 ITYSIGSGSVSAPLSQFSINKESGQICTSTALDRDEGADSFHFTVTATDGGGLSSSASVL 650

Query:    59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANL 118
             + + D+NDN P F P+ Y VSL       T+   V A D D+   G ++Y  V+G  ++ 
Sbjct:   651 VSLEDINDNRPSFYPLNYAVSLSTQSSPGTSVIRVTAHDPDAGANGRVTYHTVSGGGSSF 710

Query:   119 FRIDRSSGELFVTRGNFLSRSNSY-HINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ 177
             F +++ +G + ++R +   ++NS   + +SA DGGG     +A+VNI+++   +  P+F+
Sbjct:   711 FTLNKDTGVISLSR-SLHGKANSVIPMVISARDGGGLTAPVNARVNISVVGGSVAPPVFE 769

Query:   178 QSTYSFVVPEDVFKNSIVGTIKAAT 202
             Q+ Y F V EDV + + VG ++A++
Sbjct:   770 QAQYFFTVSEDVLRGTEVGVVRASS 794

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B969 DCHS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 73/203 (35%), Positives = 107/203 (52%)

Query:     1 MVNYTLGES--PSRTNHFYMKSVSGEICIAQDLDFESR-SSYEFPVVATDRGGLSTTAMV 57
             +++Y+LG     S +  F + + SG++C  + LD +   SS++F V A D GGL +   V
Sbjct:   610 LLSYSLGAGLGTSGSPPFRIDAHSGDVCTTRTLDRDQGPSSFDFTVTAVDGGGLKSMVYV 669

Query:    58 RIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDAN 117
             ++ ++D NDN P F P EY  SL       TA   V A D D    G +SY I+ G    
Sbjct:   670 KVFVSDENDNPPQFYPREYAASLSAQSAPGTAVLRVRAHDPDQGPHGRLSYHILAGNSPP 729

Query:   118 LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ 177
             LF +D  SG L V        S+   + + A DGGG +   +A+VNI+I+      P+F+
Sbjct:   730 LFALDEHSGLLTVAWPLARRASSMVQLEIGARDGGGLQAEPNARVNISIVPGTPVPPVFE 789

Query:   178 QSTYSFVVPEDVFKNSIVGTIKA 200
             Q  Y F VPEDV   + VG ++A
Sbjct:   790 QLQYVFSVPEDVAPGTSVGVVQA 812

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|I3LUS1 DCHS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 298 (110.0 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 74/204 (36%), Positives = 108/204 (52%)

Query:     1 MVNYTLGES--PSRTNHFYMKSVSGEICIAQDLDFESR-SSYEFPVVATDRGGLSTTAMV 57
             +++Y+LG     S +  F + + SG++C  + LD +   SS++F V A D GGL +   V
Sbjct:   610 LLSYSLGAGLGASGSPPFRIDAHSGDVCTTRTLDRDQGPSSFDFTVTAVDGGGLKSMVYV 669

Query:    58 RIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDAN 117
             ++ ++D NDN P F P EY  SL       TA   V A D D    G +SY I+ G    
Sbjct:   670 KVFVSDENDNPPRFYPREYAASLSAQSTPGTAVLRVRAHDPDQGPHGRLSYHILAGNSPP 729

Query:   118 LFRIDRSSGELFVTRGNFLSRSNSY-HINVSAMDGGGNKCSQDAQVNINIINSHMPIPLF 176
             LF +D  SG L V       R+NS   + + A DGGG +    A+VN++I+      P+F
Sbjct:   730 LFALDEHSGLLTVA-WPLARRANSVVQLEIGAQDGGGLQAEPRARVNVSIVPGTPSPPVF 788

Query:   177 QQSTYSFVVPEDVFKNSIVGTIKA 200
             +Q  Y F VPEDV   + VG ++A
Sbjct:   789 EQLQYVFSVPEDVAPGTSVGVVQA 812

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24292	DS_DROME	No assigned EC number	0.5071	0.9622	0.0582	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	212
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	2e-17
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	3e-15
smart00112	81	smart00112, CA, Cadherin repeats	3e-15
pfam00028	92	pfam00028, Cadherin, Cadherin domain	5e-14
smart00112	81	smart00112, CA, Cadherin repeats	5e-12
pfam00028	92	pfam00028, Cadherin, Cadherin domain	8e-08

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 75  EYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGN 134
            Y VS+ ++    T    V ATD DS   G ++Y IV+G +  LF ID S+GE+   +  
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKP- 59

Query: 135 FLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
            L R   +SY + V+A DGGG   S  A V I ++
Sbjct: 60  -LDREEQSSYTLTVTATDGGGPPLSSTATVTITVL 93

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 2  VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRI 59
          V Y++  S +    F +   +GEI  A+ LD E +SSY   V ATD GG  LS+TA V I
Sbjct: 32 VTYSI-VSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTI 90

Query: 60 QITDVNDN 67
           + DVNDN
Sbjct: 91 TVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 67.4 bits (165), Expect = 3e-15
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 1  MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVR 58
           V Y++  S +    F +   +GEI   + LD E +  Y   V ATD GG  LS+TA V 
Sbjct: 12 KVTYSI-LSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVT 70

Query: 59 IQITDVNDNEP 69
          I + DVNDN P
Sbjct: 71 ITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 64.6 bits (158), Expect = 5e-14
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 76  YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNF 135
           Y+ S+ ++    T    V ATD D    G I Y I+ G     FRID  +G+L  T+   
Sbjct: 1   YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTK--P 58

Query: 136 LSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
           L R     Y + V A D GG   S    V I ++
Sbjct: 59  LDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 58.9 bits (143), Expect = 5e-12
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 95  ATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGG 152
           ATD DS   G ++Y I++G D  LF ID  +GE+  T+   L R     Y + V A DGG
Sbjct: 2   ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKP--LDREEQPEYTLTVEATDGG 59

Query: 153 GNKCSQDAQVNINI--INSHMP 172
           G   S  A V I +  +N + P
Sbjct: 60  GPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 9  SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQIT 62
                 F +   +G++   + LD ES   YE  V+ATD G   LS+T  V I + 
Sbjct: 37 GGGPGGWFRIDPDTGDLSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.97
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.92
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.77
KOG1834|consensus	952		99.76
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.67
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.63
KOG1834|consensus	952		99.4
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.23
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.53
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	97.2
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.18
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	97.11
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	97.02
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	97.01
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.15
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	94.24
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	93.81
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	92.42
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	92.01
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	88.1
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	86.93
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	86.25
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	84.61
PF12245	60	Big_3_2: Bacterial Ig-like domain (group 3); Inter	82.53

>KOG4289|consensus

Probab=100.00  E-value=5.3e-39  Score=282.79  Aligned_cols=207  Identities=29%  Similarity=0.453  Sum_probs=196.2

Q ss_pred             eEEEEcC--CCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCceE
Q psy11061          2 VNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVEYN   77 (212)
Q Consensus         2 i~Y~i~~--~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~~~   77 (212)
                      +.|++..  ++.+.++|+||+.+|.|++++.||||..+.+.|.|.|+|.+.  .+++++++|.|.|.|||+|+|.+..|.
T Consensus       196 l~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~  275 (2531)
T KOG4289|consen  196 LYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYR  275 (2531)
T ss_pred             eEEEeeeccchhccccEeeccccccchhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHH
Confidence            6788833  335679999999999999999999999999999999999983  789999999999999999999999999


Q ss_pred             EEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCCCC
Q psy11061         78 VSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGGNK  155 (212)
Q Consensus        78 ~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~~~  155 (212)
                      -++.|+.++|..|+++.|+|.|.++|+.|.|++..|++...|.|++.+|.|++..+  +|  ....|.|.|.|+|+|.++
T Consensus       276 e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~--lDRE~~~~y~L~VeAsDqG~~p  353 (2531)
T KOG4289|consen  276 EELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAP--LDREELESYQLDVEASDQGRPP  353 (2531)
T ss_pred             HHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCc--cCHHhhhheEEEEEeccCCCCC
Confidence            99999999999999999999999999999999999988899999999999999999  88  899999999999999887


Q ss_pred             eeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCee
Q psy11061        156 CSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTE  210 (212)
Q Consensus       156 ~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~  210 (212)
                      ...+++|.|+|.|+|||+|+|....|.+.|.|+..++++|++|+|+|+|-|.|+.
T Consensus       354 gp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~  408 (2531)
T KOG4289|consen  354 GPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGK  408 (2531)
T ss_pred             CCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCce
Confidence            7779999999999999999999999999999999999999999999999999884

>KOG4289|consensus

Probab=100.00  E-value=4.6e-38  Score=276.90  Aligned_cols=207  Identities=32%  Similarity=0.479  Sum_probs=196.7

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCceEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVEYNV   78 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~~~~   78 (212)
                      .|+|++.+++ ..+.|+|++.+|.|++..+||||+.+.|.|.|.|+|.|.  ...+++|.|.|.|.|||+|+|....|.+
T Consensus       303 ni~Yrl~eg~-~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvv  381 (2531)
T KOG4289|consen  303 NIRYRLLEGN-AKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVV  381 (2531)
T ss_pred             ceEEEecCCC-ccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEE
Confidence            4899998886 568999999999999999999999999999999999983  3458999999999999999999999999


Q ss_pred             EEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC-CCCeEEEEEEEEECCCCCee
Q psy11061         79 SLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS-RSNSYHINVSAMDGGGNKCS  157 (212)
Q Consensus        79 ~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld-~~~~~~l~v~a~D~~~~~~~  157 (212)
                      .|.|+..+++.|++++|+|.|.+.|+.+.|+|.+|+.-+.|.||..+|++.+..+  || +...|+++|+|.|++-|+.+
T Consensus       382 qv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~p--lD~e~~~ytl~IrAqDggrPpLs  459 (2531)
T KOG4289|consen  382 QVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEP--LDFENSEYTLRIRAQDGGRPPLS  459 (2531)
T ss_pred             EecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEecc--ccccCCeeEEEEEcccCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999  99 77799999999999999988


Q ss_pred             eeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCee
Q psy11061        158 QDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTE  210 (212)
Q Consensus       158 ~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~  210 (212)
                      .+.-+.|+|.|+|||+|.|...++..+|-|+.+.|..++.+.|.|.|+|.++.
T Consensus       460 n~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~  512 (2531)
T KOG4289|consen  460 NTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENAR  512 (2531)
T ss_pred             CCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccc
Confidence            88888899999999999999999999999999999999999999999999874

>KOG1219|consensus

Probab=100.00  E-value=5.3e-34  Score=258.39  Aligned_cols=207  Identities=28%  Similarity=0.393  Sum_probs=195.6

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCceEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVEYNV   78 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~~~~   78 (212)
                      .|.|+|..++ ..+.|.|+..+|.|++.++||||....|-|++.|.|.|.  +++.+.+.|.|.|+|||+|+|....|..
T Consensus       987 ~l~Y~I~~gd-g~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~a 1065 (4289)
T KOG1219|consen  987 ELSYKIRTGD-GDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVYYA 1065 (4289)
T ss_pred             eEEEEEEcCC-cceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCceEee
Confidence            3789997775 468999999999999999999999999999999999984  7889999999999999999999999999


Q ss_pred             EEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCCCCe
Q psy11061         79 SLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGGNKC  156 (212)
Q Consensus        79 ~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~~~~  156 (212)
                      +|.|+++.+..+.++.|.|+|...++++.|+|.+|++.+.|.||+.+|.|+..+.  ||  ++..+.|.|.+.|.|.|+.
T Consensus      1066 sI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~TG~iTt~r~--LDRE~qdEHiLeVTi~D~gep~l 1143 (4289)
T KOG1219|consen 1066 SISENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPETGLITTIRR--LDREKQDEHILEVTIQDNGEPWL 1143 (4289)
T ss_pred             eeccCCCCceEEEEeccCCCCcccCcceEEEEccCCccceEEEccccceeeeehh--hcccccccceEEEEEecCCCCcc
Confidence            9999999999999999999998889999999999999999999999999998888  88  8999999999999999999


Q ss_pred             eeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeecC
Q psy11061        157 SQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS  212 (212)
Q Consensus       157 ~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~s  212 (212)
                      ++.+.|.|.|.|+|||+|.|.+..+...|+|...+  .++++.|.|.|+|.++.++
T Consensus      1144 ~s~~rviV~IldvNdnsp~Flqk~~~~~v~~r~s~--plyRl~a~d~DeG~narit 1197 (4289)
T KOG1219|consen 1144 CSNQRVIVSILDVNDNSPRFLQKKTFLRVPERSSP--PLYRLAAQDNDEGNNARIT 1197 (4289)
T ss_pred             ccceEEEEEEeeccCCchhhhhheeEEEeeeccCC--ceeEEEEEecCCCcceEEE
Confidence            99999999999999999999999999999998766  8999999999999998764

>KOG1219|consensus

Probab=100.00  E-value=5.1e-33  Score=252.14  Aligned_cols=204  Identities=29%  Similarity=0.421  Sum_probs=190.8

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCC-CCceEEEEEEEEeecCCCCCccCCCceEEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG-GLSTTAMVRIQITDVNDNEPIFNPVEYNVS   79 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~-~~~~~~~v~i~V~d~nd~~P~f~~~~~~~~   79 (212)
                      +|.|+|.++.  -.+|.++-+||.|.+..+||||....|.|.|+|+|.+ ++.+++.|.|.|.|+|||+|+|.+..|...
T Consensus      2109 kv~YsIldg~--~slFtvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p~~Aea~VeIiV~dIndn~PvFeqlsYt~s 2186 (4289)
T KOG1219|consen 2109 KVTYSILDGN--TSLFTVNFTTGVILVLIPLDREASTLHELLIEATDAGIPLSAEAKVEIIVGDINDNPPVFEQLSYTIS 2186 (4289)
T ss_pred             ceEEEEecCC--cceEEEecccceEEeccccccccccceEEEEEEeccCCCcceeeEEEEEecccCCCCchhheeeEEEE
Confidence            4799999987  6899999999999999999999999999999999987 689999999999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCC-CCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCCCCe
Q psy11061         80 LRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK-DANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGGNKC  156 (212)
Q Consensus        80 v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~-~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~~~~  156 (212)
                      +.|+++.|+.+.++.|+|.|.  |..+.|++..+. ....|+|+..||.|++.+.  ||  +.+.|.+.|+|+|+|.+ .
T Consensus      2187 isE~s~igt~viqilATdsDs--n~~isYsl~g~s~~sk~f~In~sTG~it~~g~--ldyE~~q~f~~fvratdggk~-l 2261 (4289)
T KOG1219|consen 2187 ISENSKIGTKVIQILATDSDS--NREISYSLEGNSEISKPFRINVSTGWITVAGK--LDYEENQEFRFFVRATDGGKP-L 2261 (4289)
T ss_pred             ccCCCccCceEEEEEeccCCC--CCceEEEeecCCccccceEEecccceEEEeee--cChhhcceEEEEEEEccCCCc-c
Confidence            999999999999999999997  788999998743 3568999999999999999  88  89999999999998877 6


Q ss_pred             eeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        157 SQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       157 ~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      ++.+.|.|.|.|+|||+|.|.+..|.+.|+|.+..|..|..+.|.|.|.-+...+
T Consensus      2262 Sseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ 2316 (4289)
T KOG1219|consen 2262 SSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKL 2316 (4289)
T ss_pred             cccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEeccCCccchhhh
Confidence            6789999999999999999999999999999999999999999999998876643

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.97  E-value=2.2e-28  Score=185.86  Aligned_cols=165  Identities=34%  Similarity=0.576  Sum_probs=148.9

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCc--eEEEEEEEEeecCCCCCccCCCceEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLS--TTAMVRIQITDVNDNEPIFNPVEYNV   78 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~--~~~~v~i~V~d~nd~~P~f~~~~~~~   78 (212)
                      +++|+|.++.. ..+|.|++.+|.|+++++||||....|.|.|+|.|.|...  ....++|.|.|+||++|.|....|.+
T Consensus        31 ~~~y~i~~~~~-~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~  109 (199)
T cd00031          31 RVTYSILGGNE-DGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEA  109 (199)
T ss_pred             eEEEEEeCCCC-cccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCcccccceEE
Confidence            37899988762 2799999999999999999999999999999999976544  89999999999999999999889999


Q ss_pred             EEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCCCCe
Q psy11061         79 SLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGGNKC  156 (212)
Q Consensus        79 ~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~~~~  156 (212)
                      .+.|+.+.|+.++++.|+|+|.+.++.+.|++..+...++|.|++.+|.|.+...  +|  ....|.+.|.|+|.+++..
T Consensus       110 ~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~--ld~e~~~~~~l~v~a~D~~~~~~  187 (199)
T cd00031         110 SVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIITLAKP--LDREEKSSYELTVVATDGGGPPL  187 (199)
T ss_pred             EEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEEeCCc--cCCccCceEEEEEEEEECCCCCc
Confidence            9999999999999999999999888899999987765589999999999999988  77  6779999999999987667


Q ss_pred             eeeEEEEEEEee
Q psy11061        157 SQDAQVNINIIN  168 (212)
Q Consensus       157 ~~~~~v~I~v~d  168 (212)
                      +.++.++|.|.|
T Consensus       188 ~~~~~i~i~v~d  199 (199)
T cd00031         188 SSTATVTVTVLD  199 (199)
T ss_pred             eeEEEEEEEEEC
Confidence            778888888865

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.92  E-value=2.3e-23  Score=158.13  Aligned_cols=132  Identities=35%  Similarity=0.591  Sum_probs=122.2

Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCC
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGG  153 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~  153 (212)
                      |.+.+.|+.+.|+.++++.|.|+|.+.++.+.|+|..+...++|.|++.+|.|++.+.  ||  ....|.|.|.|+|.+.
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~--lD~e~~~~~~l~v~a~D~g~   79 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKP--LDREEQSEYTLTVVASDGGG   79 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCC--CCCcCCceEEEEEEEEECCc
Confidence            7889999999999999999999999888899999998766589999999999999998  77  7899999999999887


Q ss_pred             CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCe
Q psy11061        154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT  209 (212)
Q Consensus       154 ~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~  209 (212)
                      +.++....++|.|.|+||++|.|....|.+.+.|+.++|+.++++.|+|+|.+.+.
T Consensus        80 ~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~  135 (199)
T cd00031          80 PPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENA  135 (199)
T ss_pred             CcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCc
Confidence            77778899999999999999999988999999999999999999999999997444

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.77  E-value=3.8e-17  Score=109.27  Aligned_cols=90  Identities=34%  Similarity=0.542  Sum_probs=84.7

Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEEC-C
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDG-G  152 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~-~  152 (212)
                      |.+.|+|+.+.|+.++++.|.|+|.+.++.+.|+|..++..++|.|++.+|.|.+.+.  ||  ....|.|.|.|+|. +
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~--LD~E~~~~y~l~v~a~D~~~   78 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKP--LDRETQSSYQLTVRATDSGG   78 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSS--SCTTTTSEEEEEEEEEETTT
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeecccccee--cCcccCCEEEEEEEEEECCC
Confidence            7899999999999999999999999899999999999887899999999999999999  88  88999999999999 7


Q ss_pred             CCCeeeeEEEEEEEe
Q psy11061        153 GNKCSQDAQVNINII  167 (212)
Q Consensus       153 ~~~~~~~~~v~I~v~  167 (212)
                      .++++++++|.|+|.
T Consensus        79 ~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   79 SPPLSSTATVTINVL   93 (93)
T ss_dssp             SSEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEC
Confidence            888889999999884

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1834|consensus

Probab=99.76  E-value=6.6e-17  Score=135.82  Aligned_cols=158  Identities=27%  Similarity=0.464  Sum_probs=128.5

Q ss_pred             EEEEcCCCCCcCceEE---eCCce--EEEECCcCCcCCCCeEEEEEEEEeCCC--------CceEEEEEEEEeecCCCCC
Q psy11061          3 NYTLGESPSRTNHFYM---KSVSG--EICIAQDLDFESRSSYEFPVVATDRGG--------LSTTAMVRIQITDVNDNEP   69 (212)
Q Consensus         3 ~Y~i~~~~~~~~~F~i---d~~tg--~i~~~~~lD~E~~~~~~l~i~a~d~~~--------~~~~~~v~i~V~d~nd~~P   69 (212)
                      -|.|.+++   -.|.+   |..||  .|+.+.+||.|.++.|+|+|+|.|+|.        .+..++++|.|.|+|+.+|
T Consensus        71 ~fklhgq~---vPFdavVvdK~TGegvlRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP  147 (952)
T KOG1834|consen   71 GFKLHGQP---VPFDAVVVDKYTGEGVLRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAP  147 (952)
T ss_pred             eeEecCCC---CCceEEEEeccCCceEEeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCc
Confidence            36664443   34543   55555  699999999999999999999999872        4567899999999999999


Q ss_pred             ccCCCceEEEEecCCCCCcEEEEEEEEeCCCC-CCceE-EEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEE
Q psy11061         70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD-RFGTI-SYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHIN  145 (212)
Q Consensus        70 ~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~-~~~~i-~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~  145 (212)
                      +|....|.+.|.|+. .-..++++.|.|.|.+ +++.| .|.|+.  ++-.|.|| +.|.|+.+..  |.  +..+|.|+
T Consensus       148 ~f~ep~Yka~V~EGK-~yd~il~veAiD~DCspq~sqIC~YEI~t--~d~PFaId-n~G~irnTek--Lny~ke~~Y~lt  221 (952)
T KOG1834|consen  148 VFKEPWYKAHVTEGK-VYDSILRVEAIDKDCSPQYSQICEYEITT--PDVPFAID-NDGNIRNTEK--LNYTKEHQYKLT  221 (952)
T ss_pred             hhcccceeeEEecce-eeeeeEEEEeecCCCCCcccceeEEEecC--CCCceEEc-CCCccccccc--cccccceeEEEE
Confidence            999999999999984 4577899999999986 56666 788875  45689998 5699999999  77  89999999


Q ss_pred             EEEEECCCCCeeeeEEEEEEEeeC
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIINS  169 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d~  169 (212)
                      |.|.|.+..+....+-|+|.|...
T Consensus       222 VtAyDCg~kraa~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  222 VTAYDCGKKRAASDSLVTVHVKPT  245 (952)
T ss_pred             EEEEecccccccCcceEEEEecCc
Confidence            999998865544556788887654

>smart00112 CA Cadherin repeats

Probab=99.67  E-value=1.1e-15  Score=99.04  Aligned_cols=77  Identities=35%  Similarity=0.641  Sum_probs=70.2

Q ss_pred             EeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCCCCC
Q psy11061         96 TDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPI  173 (212)
Q Consensus        96 ~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~  173 (212)
                      +|+|.+.++.+.|+|..+...++|.|++.+|.|++.+.  ||  ....|.|.|.|+|.+++.+++.++|+|+|.|+||++
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~--LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~   78 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKP--LDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNA   78 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCc--cCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCC
Confidence            47888888999999998766589999999999988888  88  789999999999999888889999999999999999


Q ss_pred             C
Q psy11061        174 P  174 (212)
Q Consensus       174 P  174 (212)
                      |
T Consensus        79 P   79 (79)
T smart00112       79 P   79 (79)
T ss_pred             C
Confidence            8

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>smart00112 CA Cadherin repeats

Probab=99.63  E-value=4.1e-15  Score=96.30  Aligned_cols=68  Identities=40%  Similarity=0.607  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCC
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEP   69 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P   69 (212)
                      +|+|+|..+.. ..+|.|++.+|.|+++++||||....|.|.|+|.|.++  +++.+.|+|.|.|+|||+|
T Consensus        10 ~i~Y~i~~~~~-~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112       10 KVTYSILSGNE-DGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             EEEEEEecCCC-CCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            37899987762 28999999999999999999999999999999999985  7899999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.40  E-value=6.3e-12  Score=106.32  Aligned_cols=148  Identities=23%  Similarity=0.327  Sum_probs=114.2

Q ss_pred             EEEEeecCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCC--CCceE-EEEEEcCCCCCcEEE---eCCc--cEEE
Q psy11061         58 RIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD--RFGTI-SYKIVTGKDANLFRI---DRSS--GELF  129 (212)
Q Consensus        58 ~i~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~--~~~~i-~y~i~~~~~~~~F~i---d~~~--G~i~  129 (212)
                      +....-+|-+.|.... .|...|.||...-.....+.|-|.|.+  -.+.| -|+|.+.+  -.|.+   |..+  |.|+
T Consensus        20 ~~~aarankhkpwie~-ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~--vPFdavVvdK~TGegvlR   96 (952)
T KOG1834|consen   20 HHHAARANKHKPWIEE-EYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQP--VPFDAVVVDKYTGEGVLR   96 (952)
T ss_pred             ccccccccccCccccc-ceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCC--CCceEEEEeccCCceEEe
Confidence            4556677888887766 599999999765444457888898875  22334 56665432  34554   5555  5688


Q ss_pred             EeeecCCC--CCCeEEEEEEEEECC-CC-----CeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEE
Q psy11061        130 VTRGNFLS--RSNSYHINVSAMDGG-GN-----KCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAA  201 (212)
Q Consensus       130 ~~~~~~ld--~~~~~~l~v~a~D~~-~~-----~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~  201 (212)
                      .+.+  +|  .+..|+|+|+|.|.+ +|     .++..++|+|.|.|+|.++|+|..+.|.+.|.|. .....|++|.|.
T Consensus        97 aK~~--lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EG-K~yd~il~veAi  173 (952)
T KOG1834|consen   97 AKEP--LDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEG-KVYDSILRVEAI  173 (952)
T ss_pred             ecCc--ccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecc-eeeeeeEEEEee
Confidence            8888  99  699999999999977 44     4577899999999999999999999999999998 677899999999


Q ss_pred             eCC-CCCCeec
Q psy11061        202 TSD-SGKFTEF  211 (212)
Q Consensus       202 D~D-~~~~~~~  211 (212)
                      |.| +++++++
T Consensus       174 D~DCspq~sqI  184 (952)
T KOG1834|consen  174 DKDCSPQYSQI  184 (952)
T ss_pred             cCCCCCcccce
Confidence            999 5555553

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.23  E-value=1.1e-10  Score=77.79  Aligned_cols=61  Identities=36%  Similarity=0.544  Sum_probs=53.2

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeC-CC--CceEEEEEEEEe
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDR-GG--LSTTAMVRIQIT   62 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~-~~--~~~~~~v~i~V~   62 (212)
                      ++.|+|..+. +.++|.|++.+|.|+++++||||....|.|.|.|+|. ++  +++.+.|+|+|.
T Consensus        30 ~i~y~i~~~~-~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   30 QITYSILGGN-PDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPPLSSTATVTINVL   93 (93)
T ss_dssp             SEEEEEEETT-STTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred             eEEEEEecCc-ccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
Confidence            4789997776 3689999999999999999999999999999999999 53  567778887764

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.53  E-value=0.0025  Score=41.89  Aligned_cols=79  Identities=16%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             CCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC-CCCeEEEEE
Q psy11061         68 EPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS-RSNSYHINV  146 (212)
Q Consensus        68 ~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld-~~~~~~l~v  146 (212)
                      .|-|....|.+.|+.+...|..++++.-.|...  +..+.|...  +  ..|+|. ..|.|.+..+  +. ..+.-.|.|
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ss--D--pdF~V~-~DGsVy~~r~--v~l~~~~~~F~V   73 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESS--D--PDFRVL-EDGSVYAKRP--VQLSSEQRSFTV   73 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE-------SEEEEE-TTTEEEEES----S-SSS-EEEEE
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecC--C--CCEEEc-CCCeEEEeee--EecCCCceEEEE
Confidence            488999999999999999999999999988843  345777753  2  389997 5699999999  77 666678999


Q ss_pred             EEEECCCCC
Q psy11061        147 SAMDGGGNK  155 (212)
Q Consensus       147 ~a~D~~~~~  155 (212)
                      .|.|..+..
T Consensus        74 ~a~D~~~~~   82 (90)
T PF08758_consen   74 HAWDSQTQE   82 (90)
T ss_dssp             EEEETTTTE
T ss_pred             EEECCCCCe
Confidence            999987654

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=97.20  E-value=0.015  Score=38.71  Aligned_cols=69  Identities=26%  Similarity=0.342  Sum_probs=50.9

Q ss_pred             EeCCCCCCceEEEEEEcCC---CCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCCC
Q psy11061         96 TDRDSDRFGTISYKIVTGK---DANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHM  171 (212)
Q Consensus        96 ~D~D~~~~~~i~y~i~~~~---~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd  171 (212)
                      .|.|   ...+.|++...+   .+.|...|+.++.+.-...  ....+.|.++|.|+|..+  .+....++|.|.+.|+
T Consensus        25 ~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~GtP~--~~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       25 TDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGTPT--NSDVGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             ECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEECC--CCCCcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            5665   335888886432   3579999998888876443  335678999999999876  4467789999998885

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.18  E-value=0.0007  Score=43.90  Aligned_cols=60  Identities=20%  Similarity=0.455  Sum_probs=37.9

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCCCCCC--ceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC
Q psy11061         75 EYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS  137 (212)
Q Consensus        75 ~~~~~v~e~~~~g~~v~~~~a~D~D~~~~--~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld  137 (212)
                      .....|+|..+.|+.|+.+. .|......  ....|++.+.....+|.++..+|.+.+...  +|
T Consensus         2 qi~YsV~EE~~~Gt~IGnia-~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~r--ID   63 (84)
T PF08266_consen    2 QIRYSVPEEMPPGTVIGNIA-KDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSER--ID   63 (84)
T ss_dssp             EEEEEEESS--TT-EEEECC-CCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS----S
T ss_pred             CeEEEeecCCCCCCEEEEhH-HhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCc--cC
Confidence            35688999999999999984 44433211  124677777666789999999999999988  77

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=97.11  E-value=0.016  Score=38.63  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCCCceEEEEEEc-CCCCCcEEEeCCccEEEEeeecCC------C--CCCeEEEEEEEEECCCCCeeeeEE
Q psy11061         91 AVVLATDRDSDRFGTISYKIVT-GKDANLFRIDRSSGELFVTRGNFL------S--RSNSYHINVSAMDGGGNKCSQDAQ  161 (212)
Q Consensus        91 ~~~~a~D~D~~~~~~i~y~i~~-~~~~~~F~id~~~G~i~~~~~~~l------d--~~~~~~l~v~a~D~~~~~~~~~~~  161 (212)
                      +++.++|+|.+..  ..+.... ....+.|.|+. +|.+.....+..      .  ..-.-.|.+.+.|+.      +.+
T Consensus         2 G~Lt~sD~D~gd~--~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------t~~   72 (99)
T TIGR01965         2 GQLTISDADAGQA--HFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------SQT   72 (99)
T ss_pred             CceEEeCCCCCCc--eEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------eEE
Confidence            4688899997654  4555532 23467899986 688877654321      1  223456888888842      788


Q ss_pred             EEEEEeeCCCCCCeEecCceEEEEeCCC
Q psy11061        162 VNINIINSHMPIPLFQQSTYSFVVPEDV  189 (212)
Q Consensus       162 v~I~v~d~nd~~P~f~~~~~~~~v~e~~  189 (212)
                      |+|+|...|| +|+..... ...+.|+.
T Consensus        73 vtItI~GtND-apvi~~~~-~g~v~ED~   98 (99)
T TIGR01965        73 VTITITGAND-AAVIGGAD-TGSVTEDS   98 (99)
T ss_pred             EEEEEEccCC-CCEEeccc-ceeEecCC
Confidence            9999999997 66655433 46666663

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=97.02  E-value=0.075  Score=38.81  Aligned_cols=127  Identities=20%  Similarity=0.331  Sum_probs=73.8

Q ss_pred             CCeEEEEE-EEEeCCCCceEEEEEEEEeecCCCCCccCCCceEEEEecCCCC-CcEEEEEEEEeCCCCCCceEEEEEEcC
Q psy11061         36 RSSYEFPV-VATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQT-TTAFAVVLATDRDSDRFGTISYKIVTG  113 (212)
Q Consensus        36 ~~~~~l~i-~a~d~~~~~~~~~v~i~V~d~nd~~P~f~~~~~~~~v~e~~~~-g~~v~~~~a~D~D~~~~~~i~y~i~~~  113 (212)
                      ...|.+.+ .|.|.-|...+..+...+. +...+|.+.- .....+..+..+ +..-..+.++|...+. .--...+.+|
T Consensus        14 dG~Y~l~~~~a~D~agN~~~~~~~~~~~-iD~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l~Gg   90 (158)
T PF13750_consen   14 DGSYTLTVVTATDAAGNTSTSTVSETFT-IDNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITSVSLTGG   90 (158)
T ss_pred             CccEEEEEEEEEecCCCEEEEEEeeEEE-EcCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEEECC
Confidence            46899999 7999988766666654444 3556787744 111222222222 2333567788876554 3346677655


Q ss_pred             CCCCcEEEe---CCccEEEEeeecCC---CCCCeEEEEEEEEECCCCCeeeeEEEEEEEe
Q psy11061        114 KDANLFRID---RSSGELFVTRGNFL---SRSNSYHINVSAMDGGGNKCSQDAQVNINII  167 (212)
Q Consensus       114 ~~~~~F~id---~~~G~i~~~~~~~l---d~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~  167 (212)
                      .....-.+.   ...|...+.-+..+   ...+.|+|.|.|.|..|..  .+.++.....
T Consensus        91 ~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~--~~~si~F~y~  148 (158)
T PF13750_consen   91 PASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ--STKSISFSYM  148 (158)
T ss_pred             cccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCCCE--EEEEEEEEEe
Confidence            433332221   12345444433223   3688999999999998865  3445555544

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=97.01  E-value=0.013  Score=39.00  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             eEEEEcC--CCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCC
Q psy11061          2 VNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND   66 (212)
Q Consensus         2 i~Y~i~~--~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd   66 (212)
                      |+|++..  +..-..|.+.++.++.+.-. +... ....|.+.+.|+|..|.+....++|.|.+.|+
T Consensus        32 lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~-~~g~~~i~v~a~D~~g~~~~~~f~i~V~~~~~   96 (97)
T smart00736       32 LTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNS-DVGSLSLKVTATDSSGASASDTFTITVVNTND   96 (97)
T ss_pred             EEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCC-CCcEEEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence            6788743  22234799999999888874 4332 34679999999999888899999999999886

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.15  E-value=0.016  Score=37.59  Aligned_cols=31  Identities=13%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             EEEcCCCCCcCceEEeCCceEEEECCcCCcCC
Q psy11061          4 YTLGESPSRTNHFYMKSVSGEICIAQDLDFES   35 (212)
Q Consensus         4 Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~   35 (212)
                      |+|.+.. ...+|.+++.+|.|+++..+|||.
T Consensus        36 ~ri~s~~-~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen   36 FRIVSEG-NSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             BEEE-SS-SS-SEEE-TTTSEEEESS--SCCC
T ss_pred             eEEeecC-CcceeEecCCceeEEeCCccCHHH
Confidence            4543332 358999999999999999999998

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=94.24  E-value=0.35  Score=27.80  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=29.2

Q ss_pred             CCCcEEEeCCccEEEEeeecCCC-CCCeEEEEEEEEECCC
Q psy11061        115 DANLFRIDRSSGELFVTRGNFLS-RSNSYHINVSAMDGGG  153 (212)
Q Consensus       115 ~~~~F~id~~~G~i~~~~~~~ld-~~~~~~l~v~a~D~~~  153 (212)
                      -+....+|+.+|.|.-...  -. ..+.|.+.|.|+|..+
T Consensus        12 LP~gLs~d~~tG~isGtp~--~~~~~G~y~~~vtatd~~G   49 (49)
T PF05345_consen   12 LPSGLSLDPSTGTISGTPT--SSVQPGTYTFTVTATDGSG   49 (49)
T ss_pred             CCCcEEEeCCCCEEEeecC--CCccccEEEEEEEEEcCCC
Confidence            3568899999999987755  33 4579999999999753

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=93.81  E-value=0.86  Score=27.52  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             CceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEE
Q psy11061        103 FGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI  166 (212)
Q Consensus       103 ~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v  166 (212)
                      +-...|++.. ....+..+...+-.+....-    ..+.|+|.|.|.|..+.......++.|+|
T Consensus         7 ~~~Y~Y~l~g-~d~~W~~~~~~~~~~~~~~L----~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen    7 NIRYRYRLEG-FDDEWITLGSYSNSISYTNL----PPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             TEEEEEEEET-TESSEEEESSTS-EEEEES------SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             ceEEEEEEEC-CCCeEEECCCCcEEEEEEeC----CCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            3356777753 44466666433224443332    68999999999998876654446666666

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=92.42  E-value=1  Score=29.50  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             CceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCc
Q psy11061         14 NHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLS   52 (212)
Q Consensus        14 ~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~   52 (212)
                      ..|.|.+ .|.|.+++++.... ..-+|.|.|+|..+..
T Consensus        46 pdF~V~~-DGsVy~~r~v~l~~-~~~~F~V~a~D~~~~~   82 (90)
T PF08758_consen   46 PDFRVLE-DGSVYAKRPVQLSS-EQRSFTVHAWDSQTQE   82 (90)
T ss_dssp             SEEEEET-TTEEEEES--S-SS-S-EEEEEEEEETTTTE
T ss_pred             CCEEEcC-CCeEEEeeeEecCC-CceEEEEEEECCCCCe
Confidence            4799998 99999999987654 4468999999998754

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=92.01  E-value=1.1  Score=25.69  Aligned_cols=46  Identities=24%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             EEEEc--CCCCCcCceEEeCCceEEEECCcCCcC-CCCeEEEEEEEEeCCC
Q psy11061          3 NYTLG--ESPSRTNHFYMKSVSGEICIAQDLDFE-SRSSYEFPVVATDRGG   50 (212)
Q Consensus         3 ~Y~i~--~~~~~~~~F~id~~tg~i~~~~~lD~E-~~~~~~l~i~a~d~~~   50 (212)
                      +|++.  ....-+.+..||+.+|.|+-.-.  .+ ....|.+.|.|.|..|
T Consensus         1 Tys~~~~~~~~LP~gLs~d~~tG~isGtp~--~~~~~G~y~~~vtatd~~G   49 (49)
T PF05345_consen    1 TYSLTTPTGGGLPSGLSLDPSTGTISGTPT--SSVQPGTYTFTVTATDGSG   49 (49)
T ss_pred             CEEEEcCCCCCCCCcEEEeCCCCEEEeecC--CCccccEEEEEEEEEcCCC
Confidence            47761  12234578899999999987633  22 2368999999999753

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=88.10  E-value=6  Score=26.44  Aligned_cols=65  Identities=25%  Similarity=0.336  Sum_probs=42.4

Q ss_pred             CcCceEEeCCceEEEEC--------CcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCccCCCceEEEEecC
Q psy11061         12 RTNHFYMKSVSGEICIA--------QDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDD   83 (212)
Q Consensus        12 ~~~~F~id~~tg~i~~~--------~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~f~~~~~~~~v~e~   83 (212)
                      ..+.|.|++ +|.....        +.|.--+...-+|++.+.|.    .+..|+|.|...|| +|+..-. -...+.|+
T Consensus        25 ~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG----tt~~vtItI~GtND-apvi~~~-~~g~v~ED   97 (99)
T TIGR01965        25 QYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG----TSQTVTITITGAND-AAVIGGA-DTGSVTED   97 (99)
T ss_pred             CcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC----CeEEEEEEEEccCC-CCEEecc-cceeEecC
Confidence            356788888 7765533        22333334456788888885    38899999999999 7866432 23445544

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=86.93  E-value=20  Score=33.72  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=31.3

Q ss_pred             cCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCC
Q psy11061         64 VNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK  114 (212)
Q Consensus        64 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~  114 (212)
                      .||..+.+...+-...|.|+  .|+.-..+.-...|......+.|+..+|.
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En--~GtV~VtV~R~GGdl~~tVsVdY~T~DGT  443 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLEN--CGTVALTVVRRGGDLTNTVYVDYRTEDGT  443 (928)
T ss_pred             ccCCcceEEecCCeEEEeec--CcEEEEEEEEccCCCCceEEEEEEccCCc
Confidence            44545555555567778887  46666666665545544456889887764

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=86.25  E-value=5.2  Score=28.46  Aligned_cols=56  Identities=27%  Similarity=0.536  Sum_probs=39.1

Q ss_pred             EEEECCcCCcCC---CCeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCccCCCceEEEEecC
Q psy11061         24 EICIAQDLDFES---RSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDD   83 (212)
Q Consensus        24 ~i~~~~~lD~E~---~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~f~~~~~~~~v~e~   83 (212)
                      .+.+.++||...   .-...|.|.|+|..|-.....+.|.|.|  | .|...... ...|.|.
T Consensus        69 tftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~  127 (137)
T TIGR03660        69 EFTLEGPLDHAAGSDELTLNFPIIATDFDGDTSSITLPVTIVD--D-VPTITDVD-ALTVDED  127 (137)
T ss_pred             EEEEcccccCCCCCceEEEeeeEEEEeCCCCccccEEEEEEEC--C-CCeecccc-ceEEecc
Confidence            355778888854   3467888999998876566788888887  5 57765543 3667664

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=84.61  E-value=6.5  Score=23.50  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=30.1

Q ss_pred             EEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCc--eEEEEEEEE
Q psy11061          3 NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLS--TTAMVRIQI   61 (212)
Q Consensus         3 ~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~--~~~~v~i~V   61 (212)
                      .|+|...+  ..|..+...+-.+..+..    ....|+|.|+|.|..+..  ....+.|.|
T Consensus        11 ~Y~l~g~d--~~W~~~~~~~~~~~~~~L----~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen   11 RYRLEGFD--DEWITLGSYSNSISYTNL----PPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             EEEEETTE--SSEEEESSTS-EEEEES------SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             EEEEECCC--CeEEECCCCcEEEEEEeC----CCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            46564433  467666664424443322    357899999999987522  225666655

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria

Probab=82.53  E-value=7.5  Score=23.20  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=24.4

Q ss_pred             CCeEEEEEEEEeCCCCceEEEEEEEEeecCC
Q psy11061         36 RSSYEFPVVATDRGGLSTTAMVRIQITDVND   66 (212)
Q Consensus        36 ~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd   66 (212)
                      ...|++.+.|.|.-|........+.+.|..-
T Consensus        22 dg~yt~~v~a~D~AGN~~~~~~~~~i~d~~~   52 (60)
T PF12245_consen   22 DGEYTLTVTATDKAGNTSSSTTQIVIVDNTA   52 (60)
T ss_pred             CccEEEEEEEEECCCCEEEeeeEEEEEcCCC
Confidence            5789999999999888777777776666543

They have two conserved sequence motifs: AGN and GMT.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		6e-10
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		3e-04
1l3w_A	546	C-Cadherin Ectodomain Length = 546		6e-10
1l3w_A	546	C-Cadherin Ectodomain Length = 546		4e-04
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		9e-09
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		1e-08
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		1e-08
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		1e-08
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		4e-08
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		4e-05
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		7e-08
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		8e-08
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		2e-07
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		3e-06
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-05
3ubf_A	316	Crystal Structure Of Drosophila N-Cadherin Ec1-3, I		3e-05
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		4e-05
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		5e-05
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		5e-05
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		1e-04
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		1e-04
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		2e-04
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		4e-04
1q1p_A	212	E-Cadherin Activation Length = 212		6e-04
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		6e-04
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		6e-04
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		6e-04
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		6e-04
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		6e-04
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		7e-04
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		7e-04
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		7e-04

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + + LD E    Y     A    G  +     + I + D NDN P F  
Sbjct: 206 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 265
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGKD----ANLFRIDRSSG 126
             +  S+R+ +Q  T    V ATD D +     G +SY I+         NLF I+R +G
Sbjct: 266 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 325
Query: 127 ELFVTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFV 184
            + +  G  L R     Y + V A D  G   S + +  I I +++   P+F   TY+ +
Sbjct: 326 VISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTAL 384
Query: 185 VPED 188
           VPE+
Sbjct: 385 VPEN 388

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 99  DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
           + DRF  + Y I TG+ A+     +FRI+  +G + VTR       + Y ++  A+   G
Sbjct: 182 NKDRFNKVYYSI-TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 240
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
           +   +  ++ IN+I+ +   P F Q  +   V E V   + V  + A   D
Sbjct: 241 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 291

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + + LD E    Y     A    G  +     + I + D NDN P F  
Sbjct: 57  FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 116
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGKD----ANLFRIDRSSG 126
             +  S+R+ +Q  T    V ATD D +     G +SY I+         NLF I+R +G
Sbjct: 117 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 176
Query: 127 ELFVTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFV 184
            + +  G  L R     Y + V A D  G   S + +  I I +++   P+F   TY+ +
Sbjct: 177 VISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTAL 235
Query: 185 VPED 188
           VPE+
Sbjct: 236 VPEN 239

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 99  DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
           + DRF  + Y I TG+ A+     +FRI+  +G + VTR       + Y ++  A+   G
Sbjct: 33  NKDRFNKVYYSI-TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 91
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
           +   +  ++ IN+I+ +   P F Q  +   V E V   + V  + A   D
Sbjct: 92  SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 142

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATD---RGGLSTTAMVRIQITDVNDNEPIFN 72
           F +  ++G+I   + LD E ++ Y     A D      L   +   I++ D+NDN P F 
Sbjct: 48  FQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFL 107
Query: 73  PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
              Y+ ++ +     T+   V ATD D   +G    + Y I+ G+    F I+  +  + 
Sbjct: 108 NGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIK 165
Query: 130 VTRGNFLSRSNS-YHINVSAMDGGGNK--CSQDAQVNINIINSHMPIPLFQQSTYSFVVP 186
               N    +   Y + + A D GG+    S    + + + + +   P F QS Y F VP
Sbjct: 166 TALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225
Query: 187 EDVFKNSIVGTIKAATSDSGK 207
           EDV   + +G +KA   D G+
Sbjct: 226 EDVVLGTAIGRVKANDQDIGE 246

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
           GE  SR   F ++  +G + + Q LD E++S +      +D  G+  T  V IQ+ DVND
Sbjct: 48  GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 104
Query: 67  NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
           N P F+   Y+V + ++    T   +V ATD D    G++ Y       +  F ID + G
Sbjct: 105 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 162
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
            + V +      + +Y + V+A D
Sbjct: 163 IVTVIQELDYEVTQAYQLTVNATD 186

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
           GE  SR   F ++  +G + + Q LD E++S +      +D  G+  T  V IQ+ DVND
Sbjct: 49  GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 105
Query: 67  NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
           N P F+   Y+V + ++    T   +V ATD D    G++ Y       +  F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
            + V +      + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
           GE  SR   F ++  +G + + Q LD E++S +      +D  G+  T  V IQ+ DVND
Sbjct: 49  GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 105
Query: 67  NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
           N P F+   Y+V + ++    T   +V ATD D    G++ Y       +  F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
            + V +      + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-RSSYEFPVVAT---DRGGLSTTAMV 57
           + YTL         F +   SG + +A++LDFE  R  + + ++ T   D GG ST+  +
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310
Query: 58  RIQITDVNDNEPIFNPVEYNV-SLRDDIQTTTAFAVVLATDRDSDRFGTISYKI 110
            I++TDVNDN P F   +Y   ++ +DI   T+   V A D DS     I Y +
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV 364

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 14  NHFYMKSVSGEICIAQDLDFES---RSSYEFPVVATDRG---GLSTTAMVR--IQITDVN 65
           N +     +G + + +  D+E      + +F V+ T+ G   G+  T   R  I + DVN
Sbjct: 46  NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 105
Query: 66  DNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDR 123
           D  P F   P+     ++ +    T    + A D D+D    I Y IV  +    F +D 
Sbjct: 106 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDE 163
Query: 124 SSGELFVTRG-NFLSRSNSYHINVSAMDGGGN----KCSQDAQVNINIINSHMPIPLFQQ 178
            SG +  TRG +       Y + V A D  G     +     +  ++I+      P F  
Sbjct: 164 RSG-VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKR-APQFYM 221
Query: 179 STYSFVVPEDVFKNSIVGTIKAAT 202
            +Y   +PE+  K+S + +IKA +
Sbjct: 222 PSYEAEIPENQKKDSDIISIKAKS 245

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVV 185
            + V T G       +Y + V A D  G   S  A+  I + + +   P+F  STY   V
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 186 PEDVFKNSIVGTIKAATSDS 205
           PE+   N+ + T+K    D+
Sbjct: 231 PENEV-NARIATLKVTDDDA 249

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
           GE  SR   F ++  +G + + Q LD E++S +      +D  G+  T  V IQ+  VND
Sbjct: 49  GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGGVND 105
Query: 67  NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
           N P F+   Y+V + ++    T   +V ATD D    G++ Y       +  F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
            + V +      + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 8   ESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG---GLSTTAMVRIQITDV 64
           E  S    F ++   G+I   + LD E ++ YE      DR     L   +   I+++D+
Sbjct: 38  EGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDI 97
Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDR---FGTISYKIVTGKDANLFRI 121
           NDN PIF    +N S+ +  +  T+   V A D D        T++Y+I+ G +   F +
Sbjct: 98  NDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTV 155
Query: 122 DRSSGELFVTRGNFLSRSNS-YHINVSAMDGGG 153
           D  SG +F  R +    S S Y I V A D  G
Sbjct: 156 D-DSGVIFTARADLDRESQSAYEIIVKAKDALG 187

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQIT--DVNDNEPIFNP 73
           F +  +SG++ + + LD E+ ++Y+  V  TD  G      VR+ I+  D NDN P+F  
Sbjct: 50  FRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKE 109
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRD--SDRFGTISYKIV----TGKDANLFRIDRSSGE 127
             Y   + +   T T    + A D D  S     + Y I+    T    N+F ID   G+
Sbjct: 110 GPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGD 169
Query: 128 LF-VTRGNFLSR----SNSYHINVSAMDGGGN 154
           +  V     L R    +  Y + + A D GG+
Sbjct: 170 IVTVVSPVLLDRETMETPKYELVIEAKDMGGH 201

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG---GLSTTAMVRIQITDVNDNEPIFN 72
           F +   SG I   + LD E R+ Y     A DR     L   +   +++ D+NDN P F 
Sbjct: 49  FVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFL 108
Query: 73  PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
              Y+ ++ +     T+   V A+D D   +G    + Y I+ G+    F ++  +G + 
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIR 166
Query: 130 VTRGNFLSRSN-SYHINVSAMDGGGN 154
               N    +   YH+ + A D GG+
Sbjct: 167 TALPNMDREAKEEYHVVIQAKDMGGH 192

>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 14  NHFYMKSVSGEICIAQDLDFES---RSSYEFPVVATDRG---GLSTTAMVR--IQITDVN 65
           N +     +G + + +  D+E      + +F V+ T+ G   G+  T   R  I + DVN
Sbjct: 41  NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 100
Query: 66  DNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDR 123
           D  P F   P+     ++ +    T    + A D D+D    I Y IV  +    F +D 
Sbjct: 101 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDE 158
Query: 124 SSGELFVTRG-NFLSRSNSYHINVSAMDGGGN----KCSQDAQVNINIINSHMPIPLFQQ 178
            SG +  TRG +       Y + V A D  G     +     +  ++I+      P F  
Sbjct: 159 RSG-VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKR-APQFYM 216
Query: 179 STYSFVVPEDVFKNSIVGTIKAAT 202
            +Y   +PE+  K+S + +IKA +
Sbjct: 217 PSYEAEIPENQKKDSDIISIKAKS 240

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
           G     T  F +  +SG++ + + LD E  + +     A D  G  +     + I + D+
Sbjct: 42  GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
           NDN P F    +N S+ +  +  T    V A D D      G + Y+I++   +    N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNK---CSQDAQVNINIINSHMPIP 174
           F I+  +G++  V  G    +   Y + + A D  GN     S  A   I + + +   P
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPP 221
Query: 175 LFQQSTYSFVVPED 188
            F   T+   VPE+
Sbjct: 222 EFTAMTFYGEVPEN 235

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFN 72
           F +   +G+I   + LD E +  Y     A +R     +   +   I+I D+NDNEPIF 
Sbjct: 48  FIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFT 107
Query: 73  PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
              Y  ++ +     T    V ATD D   +G    + Y I+ G+    F ++  +G + 
Sbjct: 108 KDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIK 165
Query: 130 VTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINI 166
               N + R N   Y + + A D GG          +NI
Sbjct: 166 TALLN-MDRENREQYQVVIQAKDMGGQMGGLSGTTTVNI 203

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
           G     T  F +  +SG++ + + LD E  + +     A D  G  +     + I + D+
Sbjct: 42  GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
           NDN P F    +N S+ +  +  T    V A D D      G + Y+IV+   +    N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNKC 156
           F I+  +G++  V  G    +   Y + + A D  GN  
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 53  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 112
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 172
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPI 173
            + V T G       +Y + V A D  G   S  A+  I +  IN + P+
Sbjct: 173 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 222

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
           G     T  F +  +SG++ + + LD E  + +     A D  G  +     + I + D+
Sbjct: 42  GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
           NDN P F    +N S+ +  +  T    V A D D      G + Y+I++   +    N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNKC 156
           F I+  +G++  V  G    +   Y + + A D  GN  
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + + LD E  ++Y      V+++   +     + I +TD NDN+P F  
Sbjct: 51  FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y I++      D N+F I+R++G
Sbjct: 111 EVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTG 170
Query: 127 EL-FVTRGNFLSRSNSYHINVSAMDGGGNKCS 157
            +  VT G       +Y + V A D  G   S
Sbjct: 171 VISVVTTGLDRESFPTYTLVVQAADLQGEGLS 202

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   ++    + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 50  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 109
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 110 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 169
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 170 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 210

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 53  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 112
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 172
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 173 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 213

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16  FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
           F ++  +G + + Q LD E+ + Y      V+++   +     + I +TD NDN P F  
Sbjct: 52  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 111
Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
             +  S+ +     T+   V ATD D D       I+Y IV+        N+F ++R +G
Sbjct: 112 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 171
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
            + V T G       +Y + V A D  G   S  A+  I +
Sbjct: 172 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-39
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	5e-26
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	3e-17
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	8e-39
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-33
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-29
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	5e-26
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-20
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-14
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-08
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-38
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-32
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	7e-28
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-25
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-16
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-08
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-38
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	4e-28
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	4e-26
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-16
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-38
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	7e-34
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	4e-28
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	9e-28
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	7e-16
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-35
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-18
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-09
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	7e-35
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-28
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-13
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-13
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-33
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-33
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-26
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	5e-12
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	6e-33
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	7e-24
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	2e-14
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	8e-33
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-15
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-10
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	9e-33
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-16
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	1e-32
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-16
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	6e-10
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-32
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	6e-18
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-08
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	8e-31
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	5e-20
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	3e-06
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	1e-21
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-16
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-13
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	8e-19
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	5e-18
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-16
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	2e-15
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-16
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	1e-12
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	2e-16
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	6e-10
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	3e-16
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	7e-13
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-14
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-09
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	6e-13
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-08
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	4e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	8e-09
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-10
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	6e-09
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-09
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-09

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  136 bits (344), Expect = 2e-39
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 18/217 (8%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
           + Y L         F +  ++G+I   + LD E ++ Y     A D      L   +   
Sbjct: 35  IKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFI 93

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
           I++ D+NDN P F    Y+ ++ +     T+   V ATD D   +G    + Y I+ G+ 
Sbjct: 94  IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP 153

Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINI--INS 169
              F I+  +  +     N + R     Y + + A D GG+    S    + + +  +N 
Sbjct: 154 --YFSIEPETAIIKTALPN-MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVND 210

Query: 170 HMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           +   P F QS Y F VPEDV   + +G +KA   D G
Sbjct: 211 N--PPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG 245

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  101 bits (253), Expect = 5e-26
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 15  HFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITDVNDNEP 69
           +F ++  +  I  A  ++D E++  Y   + A D GG    LS T  + + +TDVNDN P
Sbjct: 154 YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPP 213

Query: 70  IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRS----S 125
            F    Y+ S+ +D+   TA   V A D+D       SY I+ G    LF I        
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQD 273

Query: 126 GELFVTRGNFLSR--SNSYHINVSAMDGGGNKC-------SQDAQVNINI 166
           G + + +   L      SY + V A +   +            A V I +
Sbjct: 274 GVIRLRKP--LDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
            ++N +     L +           L TD D      I Y +       +F+I+  +G++
Sbjct: 2   WVWNQM---FVLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGTIFQINDITGDI 57

Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSF 183
              +   L R     Y +   A+D   NK     ++  I +  IN + P   F    Y  
Sbjct: 58  HAIKR--LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPE--FLNGPYHA 113

Query: 184 VVPEDVFKNSIVGTIKAATSDSGKFTE 210
            VPE     + V  + A  +D   +  
Sbjct: 114 TVPEMSILGTSVTNVTATDADDPVYGN 140

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  140 bits (355), Expect = 8e-39
 Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + + LD E    Y     A    G  +     
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248

Query: 57  VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
           + I + D NDN P F    +  S+R+ +Q  T    V ATD D +       +SY I+  
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308

Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI- 166
                  NLF I+R +G +    G  L R     Y + V A D  G   S + +  I I 
Sbjct: 309 DPEEPIPNLFTINRETGVI-SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367

Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
             N + PI  F   TY+ +VPE+      V  +     D  
Sbjct: 368 DANDNAPI--FDPKTYTALVPENEI-GFEVQRLSVTDLDMP 405

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  125 bits (315), Expect = 2e-33
 Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 17/212 (8%)

Query: 9   SPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVN 65
                N F +   +G I +    LD E    Y   V ATD  G  LS      IQITD N
Sbjct: 311 EEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 370

Query: 66  DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRIDRS 124
           DN PIF+P  Y   + ++ +       +  TD D        +   +   +   F I   
Sbjct: 371 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 429

Query: 125 S----GELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNINIINSHMPIPL 175
                G L   +G  L       Y + ++  +         +  A V + + + +   P 
Sbjct: 430 PESNQGILTTAKG--LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PF 486

Query: 176 FQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
           F  +     V ED+ +   + ++ A   D  +
Sbjct: 487 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 518

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  112 bits (281), Expect = 6e-29
 Identities = 38/221 (17%), Positives = 83/221 (37%), Gaps = 26/221 (11%)

Query: 1   MVNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFPVVATD-----RGGL 51
              Y +  +      F +    +S  G +  A+ LDFE R  Y   +   +         
Sbjct: 411 QAVYKIRVNEG--GFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLP 468

Query: 52  STTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV 111
           ++TA V + + DVN+  P F P    V + +D+        ++A D D  +   +SY I 
Sbjct: 469 TSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG 527

Query: 112 TGKDANLFRIDRSSGELFVT----RGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI- 166
               A    +++ +G +       R +   ++N+Y + +   D G +  +    + +++ 
Sbjct: 528 ND-PARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 586

Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
            +N + P+       ++               +  + +D  
Sbjct: 587 DVNDNGPV--PSPRVFTMCDQNPE-----PQVLTISDADIP 620

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  103 bits (259), Expect = 5e-26
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 16/193 (8%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRG--GLSTTA 55
           ++Y +G  P+      +   +G +    +LD ES     ++Y   ++ TD G    + T 
Sbjct: 522 LSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 579

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGK 114
            + + + DVNDN P+ +P  + +  ++         V+  +D D           +  G 
Sbjct: 580 TLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGS 634

Query: 115 DANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
           D        S G   +       +   Y I V   D   N         +          
Sbjct: 635 DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK- 693

Query: 175 LFQQSTYSFVVPE 187
             Q+         
Sbjct: 694 -CQEKLVGGFDLP 705

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 38/219 (17%)

Query: 22  SGEICIAQDLDFESRSSYEFPVVATDRGGLST----------------TAMVRIQITDVN 65
            G + + + +     + +            ST                +   ++ +    
Sbjct: 85  DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFP 144

Query: 66  DNEPIFNPVE-------YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGK 114
           +        +         VS  +          ++    + DRF  + Y I        
Sbjct: 145 ETHTGLKRKKRDWVIPPIKVSENER---GPFPKRLVQIKSNKDRFNKVYYSITGQGADNP 201

Query: 115 DANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSH 170
              +FRI+  +G + VTR   L R   + Y ++  A+   G+   +  ++ IN+   N +
Sbjct: 202 PQGVFRIEWETGWMLVTRP--LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDN 259

Query: 171 MPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
            P   F Q  +   V E V   + V  + A   D    +
Sbjct: 260 RPK--FTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 296

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 44  VATDR---------GGLSTTAMVRIQITDVNDNEPIFNPVEYNVSL-RDDIQTTTAFAVV 93
           + + R         G L    +V     DV+  +P F+  EY  S+ R +++       V
Sbjct: 1   MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60

Query: 94  LATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSA----- 148
             +D  + + G            + FR+    G + V R   L +   + I+        
Sbjct: 61  NFSDCTTRKHGLYDV------GDSRFRVL-PDGTVLVKRHVKLHKDTKFTISTWDARGIK 113

Query: 149 -----------MDGGGNKCSQDAQVNINIINSHMPIPLFQQSTY---SFVVPEDVFKNSI 194
                         G    S+ +++ +            ++  +      V E+  +   
Sbjct: 114 HSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPF 172

Query: 195 VGTIKAATSDSGK 207
              +    S+  +
Sbjct: 173 PKRLVQIKSNKDR 185

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 12/156 (7%), Positives = 25/156 (16%), Gaps = 9/156 (5%)

Query: 4   YTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITD 63
            +L                G   +        +  Y   V+ +D        +V   +  
Sbjct: 628 VSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCS 686

Query: 64  VNDNEPIFNPVEYNVSLRDD------IQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA- 116
                                              +L       +       ++   D  
Sbjct: 687 CEGKAIKCQEKLVGGFDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDTR 746

Query: 117 -NLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDG 151
            N+F      G       +              M  
Sbjct: 747 DNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMRN 782

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  138 bits (351), Expect = 1e-38
 Identities = 58/222 (26%), Positives = 87/222 (39%), Gaps = 20/222 (9%)

Query: 1   MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
            V Y++   G        F ++  +G + + + LD E    Y     A    G  +    
Sbjct: 39  KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 98

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVT 112
            + I + D NDN P F    +  S+R+ +Q  T    V ATD D +       +SY I+ 
Sbjct: 99  EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158

Query: 113 G----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI 166
                   NLF I+R +G +    G  L R     Y + V A D  G   S + +  I I
Sbjct: 159 QDPEEPIPNLFTINRETGVI-SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQI 217

Query: 167 --INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
              N + PI  F   TY+ +VPE+      V  +     D  
Sbjct: 218 TDANDNAPI--FDPKTYTALVPENE-IGFEVQRLSVTDLDMP 256

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  121 bits (305), Expect = 2e-32
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 17/212 (8%)

Query: 9   SPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVN 65
                N F +   +G I +    LD E    Y   V ATD  G  LS      IQITD N
Sbjct: 162 EEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 221

Query: 66  DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRI--- 121
           DN PIF+P  Y   + ++ +       +  TD D        +   +   +   F I   
Sbjct: 222 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 280

Query: 122 -DRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNINIINSHMPIPL 175
            + + G L   +G  L       Y + ++  +         +  A V + + + +   P 
Sbjct: 281 PESNQGILTTAKG--LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PF 337

Query: 176 FQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
           F  +     V ED+ +   + ++ A   D  +
Sbjct: 338 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 369

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  108 bits (273), Expect = 7e-28
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 20/199 (10%)

Query: 19  KSVSGEICIAQDLDFESRSSYEFPVVATD-----RGGLSTTAMVRIQITDVNDNEPIFNP 73
           +S  G +  A+ LDFE R  Y   +   +         ++TA V + + DVN+  P F P
Sbjct: 282 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVP 340

Query: 74  VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRG 133
               V + +D+        ++A D D  +   +SY I     A    +++ +G +     
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND-PARWLTVNKDNGIVTGNGN 399

Query: 134 ----NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPE 187
               +   ++N+Y + +   D G +  +    + +++  +N + P+       ++     
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV--PSPRVFTMCDQN 457

Query: 188 DVFKNSIVGTIKAATSDSG 206
                     +  + +D  
Sbjct: 458 PE-----PQVLTISDADIP 471

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  102 bits (255), Expect = 2e-25
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 14/178 (7%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRG--GLSTTA 55
           ++Y +G  P+      +   +G +    +LD ES     ++Y   ++ TD G    + T 
Sbjct: 373 LSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGK 114
            + + + DVNDN P+ +P  + +  ++         V+  +D D           +  G 
Sbjct: 431 TLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGS 485

Query: 115 DANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
           D        S G   +       +   Y I V   D   N         +        
Sbjct: 486 DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 543

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
           PI                      ++    + DRF  + Y I           +FRI+  
Sbjct: 12  PIKVSENERGPFP---------KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 62

Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQST 180
           +G + VTR   L R   + Y ++  A+   G+   +  ++ IN+   N + P   F Q  
Sbjct: 63  TGWMLVTR--PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPK--FTQDV 118

Query: 181 YSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
           +   V E V   + V  + A   D    +
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDS 147

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 6/68 (8%), Positives = 13/68 (19%), Gaps = 1/68 (1%)

Query: 4   YTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITD 63
            +L                G   +        +  Y   V+ +D        +V   +  
Sbjct: 479 VSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCS 537

Query: 64  VNDNEPIF 71
                   
Sbjct: 538 CEGKAIKC 545

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  138 bits (350), Expect = 1e-38
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 20/221 (9%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + Q LD E+ + Y     A    G  +     
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93

Query: 57  VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
           + I +TD NDN P F    +  S+ +     T+   V ATD D D       I+Y IV+ 
Sbjct: 94  IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153

Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI- 166
                  N+F ++R +G + V     L R    +Y + V A D  G   S  A+  I + 
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212

Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
            IN + P+  F  STY   VPE+   N+ + T+K    D+ 
Sbjct: 213 DINDNAPV--FNPSTYQGQVPENE-VNARIATLKVTDDDAP 250

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  109 bits (275), Expect = 4e-28
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 27/221 (12%)

Query: 2   VNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFPVVATDRGG-----LS 52
             YT+   P     F +     +  G +  A+ LDFE++  Y   V   +        + 
Sbjct: 257 AVYTVVNDPD--QQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVP 314

Query: 53  TTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVT 112
           +TA V + + DVN+  PIF P E  V + +D           A + D+     I+Y+I  
Sbjct: 315 STATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373

Query: 113 GKDANLFRIDRSSGELFVTR-----GNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI- 166
              AN   I+  +G +F             ++++Y   + A D G    +    + + + 
Sbjct: 374 D-TANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLL 432

Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
            +N +   P+ +     F              I     D  
Sbjct: 433 DVNDN--APIPEPRNMQFCQRNPQ-----PHIITILDPDLP 466

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  103 bits (260), Expect = 4e-26
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-----RSSYEFPVVATDRGG--LSTT 54
           + Y +    +  N   +   +G I    ++D E       S+Y   ++ATD G    + T
Sbjct: 367 ITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGT 424

Query: 55  AMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT-ISYKIVTG 113
             + + + DVNDN PI  P       R+         ++   D D     +  + ++  G
Sbjct: 425 GTLLLVLLDVNDNAPIPEPRNMQFCQRNP-----QPHIITILDPDLPPNTSPFTAELTHG 479

Query: 114 KDAN-LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
              N     + ++ E  + +         Y I++   D           V++      + 
Sbjct: 480 ASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDCEGTVN 539

Query: 173 IPLFQQSTY 181
                ++ +
Sbjct: 540 N--CMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 93  VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
           ++    + D+   + Y I           +F I+R +G L VT+   L R     Y +  
Sbjct: 21  LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ--PLDREAIAKYILYS 78

Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
            A+   G       ++ I +   N + P   F Q  +   V E     + V  + A  +D
Sbjct: 79  HAVSSNGEAVEDPMEIVITVTDQNDNRPE--FTQEVFEGSVAEGAVPGTSVMKVSATDAD 136

Query: 205 SGKFT 209
               T
Sbjct: 137 DDVNT 141

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  137 bits (348), Expect = 3e-38
 Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 1   MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
            + Y++   G     T  F +  +SG++ + + LD E  + +     A D  G  +    
Sbjct: 33  SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPI 92

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTG 113
            + I + D+NDN P F    +N S+ +  +  T    V A D D      G + Y+I++ 
Sbjct: 93  DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152

Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNI 164
                  N+F I+  +G++       L R     Y + + A D  GN     S  A   I
Sbjct: 153 APSTPSPNMFTINNETGDIITVAAG-LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 211

Query: 165 NI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
            +  +N + P   F   T+   VPE+   + IV  +     D  
Sbjct: 212 TVTDVNDNPPE--FTAMTFYGEVPENRV-DVIVANLTVTDKDQP 252

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  125 bits (316), Expect = 7e-34
 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 28/220 (12%)

Query: 9   SPSRTNHFYMKSVSGEI-CIAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQIT 62
           S    N F + + +G+I  +A  LD E    Y   + ATD  G     LS TA   I +T
Sbjct: 155 STPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214

Query: 63  DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDR--FGTISYKIVTGKDANLFR 120
           DVNDN P F  + +   + ++ +     A +  TD+D         +Y+I  G     F 
Sbjct: 215 DVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFA 273

Query: 121 IDRSS----GELFVTRGNFLSR--SNSYHINVSAMD------GGGNKCSQDAQVNINI-- 166
           I        G + V +   +    +  + + V+A +      G  +     A V++ +  
Sbjct: 274 ILTDPNSNDGLVTVVKP--IDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVID 331

Query: 167 INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           +N +   P F  +       E +   +++ T+ A   D  
Sbjct: 332 VNEN---PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRY 368

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  109 bits (275), Expect = 4e-28
 Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 22/202 (10%)

Query: 19  KSVSGEICIAQDLDFESRSSYEFPVVATDRG--------GLSTTAMVRIQITDVNDNEPI 70
            S  G + + + +DFE+   +   V A ++            +TA V + + DVN+N P 
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PY 337

Query: 71  FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFV 130
           F P    +   + +   T    + A D D      I Y  ++   AN  +ID  +G++  
Sbjct: 338 FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSD-PANWLKIDPVNGQITT 396

Query: 131 TRG----NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFV 184
                  +   ++N Y+    A D G    S    + I +  IN + P  L         
Sbjct: 397 IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL----PQEAE 452

Query: 185 VPEDVFKNSIVGTIKAATSDSG 206
             E    NSI   I A   D  
Sbjct: 453 TCETPEPNSIN--ITALDYDID 472

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  108 bits (272), Expect = 9e-28
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES----RSSYEFPVVATDRG--GLSTTA 55
           + YT    P+  N   +  V+G+I     LD ES     + Y    +A+D G   +S T 
Sbjct: 373 IRYTKLSDPA--NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 430

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVT 112
            ++I + D+NDN P   P E       +  +      + A D D D           +  
Sbjct: 431 TLQIYLLDINDNAPQVLPQEAETCETPEPNSI----NITALDYDIDPNAGPFAFDLPLSP 486

Query: 113 GKDANLFRIDRSSGELFVTRGNFLSRS-NSYHINVSAMDGGGNKCSQDAQVNINI--INS 169
                 + I+R +G+               Y + +   D G    S  + + + +   +S
Sbjct: 487 VTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDS 546

Query: 170 HMPIPLFQQSTYSF 183
           +          +  
Sbjct: 547 NGDC--TDVHHHHH 558

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 93  VLATDRDSDRFGTISYKIVTGKDA-----NLFRIDRSSGELFVTRGNFLSR--SNSYHIN 145
           ++    D D+  ++ Y + TG  A      +F I+  SG+L VT+   L R     +H+ 
Sbjct: 21  LVRIRSDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLR 77

Query: 146 VSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKA 200
             A+D  GN+      + IN+  +N + P   F    ++  VPE     + V T+ A
Sbjct: 78  AHAVDINGNQVENPIDIVINVIDMNDNRPE--FLHQVWNGSVPEGSKPGTYVMTVTA 132

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  123 bits (311), Expect = 1e-35
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + Q LD E+ + Y     A    G  +     
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93

Query: 57  VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
           + I +TD NDN P F    +  S+ +     T+   V ATD D D       I+Y IV+ 
Sbjct: 94  IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153

Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
                  N+F ++R +G + V     L R    +Y + V A D  G   S  A+  I + 
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 76  YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVT 131
             +S  ++ +      +V     + D+   + Y I           +F I+R +G L VT
Sbjct: 5   AAISCPENEKGEFPKNLV-QIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63

Query: 132 RGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPE 187
           +   L R     Y +   A+   G       ++ I +   N + P   F Q  +   V E
Sbjct: 64  QP--LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPE--FTQEVFEGSVAE 119

Query: 188 DVFKNSIVGTIKAATSDSGKFTE 210
                + V  + A  +D    T 
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTY 142

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 8   ESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
                 N F +   +G I +    LD ES  +Y   V A D  G  LSTTA   I + D
Sbjct: 155 PELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  124 bits (314), Expect = 7e-35
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 27/220 (12%)

Query: 9   SPSRTNHFYMKSVSGEICIAQDLDFESRSS------YEFPVVATDRG--GLSTTAMVRIQ 60
                N +     +G + + +  D+E          +              +    V I 
Sbjct: 36  KIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIIL 95

Query: 61  ITDVNDNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANL 118
           + DVND  P F   P+     ++ +    T    + A D D+D    I Y IV  +    
Sbjct: 96  VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGR 153

Query: 119 FRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGG----NKCSQDAQVNINII---NS 169
           F +D  SG +               Y + V A D  G     +     +  ++I+    +
Sbjct: 154 FEVDERSGVVRTRGT--DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRA 211

Query: 170 HMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
               P F   +Y   +PE+  K+S + +IKA +    +  
Sbjct: 212 ----PQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIR 247

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  107 bits (270), Expect = 2e-28
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 9   SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTAMVRIQIT 62
                  F +   SG +       F+    Y   V A D+ G        +T   R+ I 
Sbjct: 147 RDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 206

Query: 63  DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGKDANLFRI 121
                 P F    Y   + ++ +  +    + A          I Y +   G+ A  F I
Sbjct: 207 G-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLKAQGQGAGTFNI 262

Query: 122 DRSSGELFVTRG-NF--LSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
             +SG + + +  +F  L + + Y + V+A +  G   +    + I + 
Sbjct: 263 GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VDLTIRVT 310

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPVVATDRGG-LSTTAMV 57
           + YTL         F +   SG + +A++LDFE       Y   V AT+  G  ST+  +
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 305

Query: 58  RIQITDVNDN 67
            I++TDVNDN
Sbjct: 306 TIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 16/133 (12%)

Query: 91  AVVLATDRDSDRFGTISYKIVTGKDANLFRI--------DRSSGELFVTR------GNFL 136
             +  T+ D D  G   +++    D   F+I          ++G + V +          
Sbjct: 7   KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 66

Query: 137 SRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSI 194
              + + I  +     G K + + +V I +  +N   P  + +      VV  +   N+ 
Sbjct: 67  KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126

Query: 195 VGTIKAATSDSGK 207
           V T++A   D+  
Sbjct: 127 VFTLQARDPDTDH 139

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  122 bits (309), Expect = 2e-33
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 29/216 (13%)

Query: 14  NHFYMKSVSGEICIAQDLDFESRSS------YEFPVVATDRG--GLSTTAMVRIQITDVN 65
           N +     +G + + +  D+E          +              +    V I + DVN
Sbjct: 46  NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 105

Query: 66  DNEPIFN--PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT-ISYKIVTGKDANLFRID 122
           D  P F   P+     ++ +    T    + A D D+      I Y IV  +    F +D
Sbjct: 106 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT---DHNIHYFIVRDRTGGRFEVD 162

Query: 123 RSSGELFVTRGNFLSR--SNSYHINVSAMDGGGN----KCSQDAQVNINII---NSHMPI 173
             SG +               Y + V A D  G     +     +  ++I+    +    
Sbjct: 163 ERSGVVRTRGT--DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRA---- 216

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
           P F   +Y   +PE+  K+S + +IKA +    +  
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIR 252

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  122 bits (308), Expect = 2e-33
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 21/218 (9%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTA 55
           ++Y +         F +   SG +       F+    Y   V A D+ G        +T 
Sbjct: 146 IHYFI-VRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTP 204

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGK 114
             R+ I       P F    Y   + ++ +  +    + A          I Y +   G+
Sbjct: 205 EERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLKAQGQ 260

Query: 115 DANLFRIDRSSGELFVTRG---NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INS 169
            A  F I  +SG + + +      L + + Y + V+A +  G   +    + I +  +N 
Sbjct: 261 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VDLTIRVTDVND 319

Query: 170 HMPIPLFQQSTYS-FVVPEDVFKNSIVGTIKAATSDSG 206
           + P   F+   Y    V ED+   + +  +KA  SDSG
Sbjct: 320 NAPK--FELPDYQAHNVDEDIPLGTSILRVKAMDSDSG 355

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  103 bits (258), Expect = 4e-26
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 11/173 (6%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPVVATDRGG-LSTTAMV 57
           + YTL         F +   SG + +A++LDFE       Y   V AT+  G  ST+  +
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310

Query: 58  RIQITDVNDNEPIFNPVEYNV-SLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
            I++TDVNDN P F   +Y   ++ +DI   T+   V A D DS     I Y +      
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD--- 367

Query: 117 NLFRIDRSSGELFVTRG-NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIIN 168
             F +D S+G +   +  +  + +  Y   V+A D G    S  A V +   N
Sbjct: 368 -HFAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 20/134 (14%)

Query: 91  AVVLATDRDSDRFGTISYKIVTGKDANLFRID--------RSSGELFVTR------GNFL 136
             +  T+ D D  G   +++    D   F+I          ++G + V +          
Sbjct: 12  KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 71

Query: 137 SRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQS--TYSFVVPEDVFKN 192
              + + I  +     G K + + +V I +  +N   P   F         VV  +   N
Sbjct: 72  KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPY--FINRPLPMQAVVQLNAPPN 129

Query: 193 SIVGTIKAATSDSG 206
           + V T++A   D+ 
Sbjct: 130 TPVFTLQARDPDTD 143

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  116 bits (294), Expect = 6e-33
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
           + + +      +  F ++  +G + + Q LD E++S +      +D  G+ T   V IQ+
Sbjct: 42  LVFGV-SGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVIT-RKVNIQV 99

Query: 62  TDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRI 121
            DVNDN P F+   Y+V + ++    T   +V ATD D    G++ Y          F I
Sbjct: 100 GDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAI 157

Query: 122 DRSSGELFVTRGNFLSR--SNSYHINVSAMDGGG-NKCSQDAQVNINII 167
           D + G + V +   L    + +Y + V+A D       S  A + I I 
Sbjct: 158 DSARGIVTVIQE--LDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 93.0 bits (232), Expect = 7e-24
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 65  NDNEPIFNPVEYNVSL--RDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID 122
            +  P F    ++  L   +D    ++   +LA D D+     + + +   + +  F ++
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEASRFFAVE 58

Query: 123 RSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQ 178
             +G +++ +   L R   + + +  S  D  G       +VNI +  +N + P   F  
Sbjct: 59  PDTGVVWLRQP--LDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPT--FHN 111

Query: 179 STYSFVVPEDVFKNSIVGTIKAATSDSG 206
             YS  +PE+    + +  + A   D G
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLG 139

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
           V Y+       +  F + S  G + + Q+LD+E   +Y+  V ATD+     LST A + 
Sbjct: 144 VLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLA 200

Query: 59  IQITDVNDN 67
           I ITD+ D 
Sbjct: 201 IIITDMQDM 209

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  116 bits (292), Expect = 8e-33
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
             Y + E  S    F ++   G+I   + LD E ++ YE      DR     L   +   
Sbjct: 33  AMYII-EGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFI 91

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
           I+++D+NDN PIF    +N S+ +  +  T+   V A D D         ++Y+I+ G +
Sbjct: 92  IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE 151

Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNK-CSQDAQVNINII 167
              F +D S           L R   ++Y I V A D  G    S  A V I + 
Sbjct: 152 --YFTVDDSGVIFTARAD--LDRESQSAYEIIVKAKDALGLTGESSTATVIIRLT 202

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 87  TTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHI 144
            +     +     S       Y I       +F++    G+++      L R     Y +
Sbjct: 14  DSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFER--LDREKKAEYEL 71

Query: 145 NVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAA 201
               +D   N+     ++  I +  IN + PI  F Q  ++  VPE     + V  + A 
Sbjct: 72  TAHIIDRRNNRSLEPPSKFIIKVSDINDNAPI--FVQKIFNGSVPEMSRLGTSVTKVTAE 129

Query: 202 TSDS 205
            +D 
Sbjct: 130 DADD 133

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 13  TNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITD 63
             +F +           DLD ES+S+YE  V A D  G    S+TA V I++TD
Sbjct: 150 NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  116 bits (293), Expect = 9e-33
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 16/183 (8%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
           + Y L         F +   SG I   + LD E R+ Y     A DR     L   +   
Sbjct: 36  IKYIL-SGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
           +++ D+NDN P F    Y+ ++ +     T+   V A+D D   +G    + Y I+ G+ 
Sbjct: 95  VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP 154

Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINI--INS 169
              F ++  +G +     N + R     YH+ + A D GG+    S   +V I +     
Sbjct: 155 --YFSVEAQTGIIRTALPN-MDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYK 211

Query: 170 HMP 172
              
Sbjct: 212 DDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 70  IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
           ++N       + +           L +D DS   G I Y +       +F ID  SG + 
Sbjct: 4   VWNQF---FVIEEYTGPDPVLVGRLHSDIDSGD-GNIKYILSGEGAGTIFVIDDKSGNIH 59

Query: 130 VTRGNFLSR--SNSYHINVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSFV 184
            T+   L R     Y +   A+D   N+     ++  + +  IN + P   F    Y   
Sbjct: 60  ATK--TLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPE--FLHEIYHAN 115

Query: 185 VPEDVFKNSIVGTIKAATSDSG 206
           VPE     + V  + A+ +D  
Sbjct: 116 VPERSNVGTSVIQVTASDADDP 137

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  116 bits (292), Expect = 1e-32
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 14/176 (7%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
           + Y L       + F +   +G+I   + LD E +  Y     A +R     +   +   
Sbjct: 35  LKYIL-SGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI 93

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
           I+I D+NDNEPIF    Y  ++ +     T    V ATD D   +G    + Y I+ G+ 
Sbjct: 94  IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP 153

Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINII 167
              F ++  +G +     N + R     Y + + A D GG     S    VNI + 
Sbjct: 154 --YFSVESETGIIKTALLN-MDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 88  TAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHIN 145
             +   L +D+D    G++ Y +      +LF I+ ++G++  T+   L R     Y + 
Sbjct: 18  YQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIINENTGDIQATKR--LDREEKPVYILR 74

Query: 146 VSAMDGGGNK-CSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAAT 202
             A++    +    +++  I I  IN + PI  F +  Y+  VPE     + V  + A  
Sbjct: 75  AQAVNRRTGRPVEPESEFIIKIHDINDNEPI--FTKDVYTATVPEMADVGTFVVQVTATD 132

Query: 203 SDS 205
           +D 
Sbjct: 133 ADD 135

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 13  TNHFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITD 63
             +F ++S +G I  A  ++D E+R  Y+  + A D GG    LS T  V I +TD
Sbjct: 152 QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  115 bits (289), Expect = 3e-32
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 17/181 (9%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           + Y++   G     T  F +  +SG++ + + LD E  + +     A D  G  +     
Sbjct: 34  LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 93

Query: 57  VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD--RFGTISYKIVTG- 113
           + I + D+NDN P F    +N S+ +  +  T    V A D D      G + Y+I++  
Sbjct: 94  IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153

Query: 114 ---KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNIN 165
                 N+F I+  +G++       L R     Y + + A D  GN     S  A   I 
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAG-LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVIT 212

Query: 166 I 166
           +
Sbjct: 213 V 213

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 77.8 bits (192), Expect = 6e-18
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 93  VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
           ++    D D+  ++ Y +           +F I+  SG+L VT+   L R     +H+  
Sbjct: 21  LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRA 78

Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKA 200
            A+D  GN+      + IN+  +N + P   F    ++  VPE     + V T+ A
Sbjct: 79  HAVDINGNQVENPIDIVINVIDMNDNRPE--FLHQVWNGSVPEGSKPGTYVMTVTA 132

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 14  NHFYMKSVSGEIC-IAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQITD 63
           N F + + +G+I  +A  LD E    Y   + ATD  G     LS TA   I +TD
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  111 bits (280), Expect = 8e-31
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 18/185 (9%)

Query: 1   MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
              + L   G        F +   +G + + + LD E+ ++Y+  V  TD  G  L    
Sbjct: 33  GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPV 92

Query: 56  MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTG 113
            + + + D NDN PIF    Y   + +   T T    + A D D        + Y I   
Sbjct: 93  PLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQ 152

Query: 114 ----KDANLFRIDRSSGELFVTRGNFL-----SRSNSYHINVSAMDGGGNKC--SQDAQV 162
                  N+F ID   G++       L       +  Y + + A D  G     +  A  
Sbjct: 153 TPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATA 212

Query: 163 NINII 167
            I I 
Sbjct: 213 TIVID 217

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 83.2 bits (206), Expect = 5e-20
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
           PI  P         D+        V+ +DR       ++ K V       FRI+ ++G +
Sbjct: 7   PILIPENQRQPFPRDVGK------VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60

Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFV 184
            VTR   L R    +Y + V   D  G        + + +   N + PI  F++  Y   
Sbjct: 61  SVTR--TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPI--FREGPYIGH 116

Query: 185 VPEDVFKNSIVGTIKA 200
           V E     + V  + A
Sbjct: 117 VMEGSPTGTTVMRMTA 132

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 13  TNHFYMKSVSGEICIAQ---DLDFESR--SSYEFPVVATDRGG----LSTTAMVRIQITD 63
            N FY+    G+I        LD E+     YE  + A D  G    L+ TA   I I D
Sbjct: 159 PNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 88.4 bits (219), Expect = 1e-21
 Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 32/193 (16%)

Query: 3   NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFP----------------VVAT 46
             T        N   ++  +G + + + LD  S                         + 
Sbjct: 45  YGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSL 104

Query: 47  DRGGLSTTAMVRIQITDVNDNEPI----------FNPVEYNVSLRDDIQTTTAFAVVLAT 96
             G        R+  +  N + P           F     +  +R++    T     L  
Sbjct: 105 REGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLP 164

Query: 97  DRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGN 154
            +      +++Y+++ G +   FR    S E+       L R     Y +        G 
Sbjct: 165 VQFLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWA--LDREQREKYELVAVCTVHAGA 221

Query: 155 -KCSQDAQVNINI 166
            +        + +
Sbjct: 222 REEVVMVPFPVTV 234

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 74.2 bits (182), Expect = 2e-16
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 2   VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
           V Y L E       F     S E+     LD E R  YE   V T   G           
Sbjct: 174 VAYRLLEGEG--LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFP 231

Query: 59  IQITDVNDNEPIF 71
           + + D +D+ P F
Sbjct: 232 VTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 31/167 (18%)

Query: 71  FNPVEYNVSLRDDIQTTTAFAVVLATDRDSD--RFGTISYKI-----VTGKDANLFRIDR 123
           F+   Y   L  D    T    V A     +      +   +         + N  RI  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 124 SSGELFVTR--------------GNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--I 167
            +G L++ R                F   +    + +S       +C       +     
Sbjct: 63  DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122

Query: 168 NSHMPI--------PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
           N+  P           F ++  SF + E+    +             
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLC 169

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 77.5 bits (192), Expect = 8e-19
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI--VTGKDA 116
              +  NDN P F    Y   L ++    T    + A D D    G I Y     T    
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 117 NLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
            L R+D +SG L V     + R   N     V A D G    +  A V +NI 
Sbjct: 62  RLLRLDETSGWLSVLHR--IDREEVNQLRFTVMARDRGQPPKTDKATVVLNIK 112

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 75.6 bits (187), Expect = 5e-18
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 2   VNYTLGESPSRTNH-FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVR 58
           + Y  G +         +   SG + +   +D E  +   F V+A DRG    +  A V 
Sbjct: 49  IEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVV 108

Query: 59  IQITDVNDNEP 69
           + I D NDN P
Sbjct: 109 LNIKDENDNVP 119

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 71.7 bits (177), Expect = 1e-16
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 59  IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI---VTGKD 115
              +  NDN P+F   +  V + ++    T+   + ATD D      I Y     V    
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 116 ANLFRIDRSSGELFVTRG-NFLSRSNSYHINVSAMDGGG 153
             LF ++ ++G + V R  +    +  + + V A DG  
Sbjct: 62  KRLFALNNTTGLITVQRSLDR-EETAIHKVTVLASDGSS 99

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 68.6 bits (169), Expect = 2e-15
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 2   VNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRI 59
           + Y  G   +P+    F + + +G I + + LD E  + ++  V+A+D       A V I
Sbjct: 49  IRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI 108

Query: 60  QITDVN 65
            +TDVN
Sbjct: 109 NVTDVN 114

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           + Y++   G     T  F +  +SG++ + + LD E  + +     A D  G  +     
Sbjct: 36  LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 95

Query: 57  VRIQITDVNDNEPIF 71
           + I + D+NDN P F
Sbjct: 96  IVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 93  VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
           ++      D+  ++ Y +           +F I+  SG+L VT+   L R     +H+  
Sbjct: 23  LVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRA 80

Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPI 173
            A+D  GN+      + IN+  +N + P 
Sbjct: 81  HAVDINGNQVENPIDIVINVIDMNDNRPE 109

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 70.5 bits (173), Expect = 2e-16
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
           PI  P         D+        V+ +DR       ++ K V       FRI+ ++G +
Sbjct: 7   PILIPENQRQPFPRDVGK------VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60

Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
            VTR   L R    +Y + V   D  G        + + +I
Sbjct: 61  SVTRT--LDRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
             + L   G        F +   +G + + + LD E+ ++Y+  V  TD  G  L     
Sbjct: 34  SKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVP 93

Query: 57  VRIQITD 63
           + + + D
Sbjct: 94  LEVIVID 100

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           + Y     G +      F     +GE+ +   LD E    +     A D  G  +     
Sbjct: 46  ITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLE 105

Query: 57  VRIQITDVNDNEPIF 71
           +RI++ D+NDNEP+F
Sbjct: 106 LRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
           P+      ++S ++ I         + +D   +R   I+YK     +T     +F  ++ 
Sbjct: 16  PVALREGEDLSKKNPIAK-------IHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKD 68

Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPI 173
           +GEL VT    L R  +  + +   A+D  GN   +  ++ I +  IN + P+
Sbjct: 69  TGELNVTSI--LDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 93  VLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMD 150
           V+ +DR       +  K V  +   +F+I+ +SGE+ VT+   L R    SY + V   D
Sbjct: 24  VVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA--LDREAIPSYQLQVETTD 81

Query: 151 GGGNKCSQDAQVNINII 167
             G        + I +I
Sbjct: 82  ENGKTIEGPVDLEILVI 98

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 2  VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
              L   G        F +   SGE+ + + LD E+  SY+  V  TD  G  +     
Sbjct: 33 SKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVD 92

Query: 57 VRIQITD 63
          + I + D
Sbjct: 93 LEILVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 61.3 bits (149), Expect = 6e-13
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 93  VLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMD 150
           V+ ++        +S K V      +FRI+  SG++ VTR   L R    +Y + V   D
Sbjct: 24  VIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRP--LDREAIANYELEVEVTD 81

Query: 151 GGGNKCSQDAQVNINII 167
             G       +++I++I
Sbjct: 82  LSGKIIDGPVRLDISVI 98

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 2  VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
            + L   G        F +  +SG++ + + LD E+ ++YE  V  TD  G  +     
Sbjct: 33 AKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVR 92

Query: 57 VRIQITD 63
          + I + D
Sbjct: 93 LDISVID 99

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
           P+ + V   +S  ++ +       ++    + D+ G + Y I           +F I+R 
Sbjct: 2   PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
           +G L VT    L R    +Y +   A+   GN      ++ I + 
Sbjct: 61  TGWLKVTEP--LDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 103

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 50.5 bits (121), Expect = 8e-09
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + + LD E  ++Y     A    G  +     
Sbjct: 38  VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 97

Query: 57  VRIQITD 63
           + I +TD
Sbjct: 98  ILITVTD 104

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 70  IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
           ++N +     L +           L TD D      I Y +       +F+I+  +G++ 
Sbjct: 3   VWNQMF---VLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGTIFQINDITGDIH 58

Query: 130 VTRGNFLSR--SNSYHINVSAMDGGGNK-CSQDAQVNINII 167
             +   L R     Y +   A+D   NK     ++  I + 
Sbjct: 59  AIKR--LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQ 97

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 2  VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
          + Y L         F +  ++G+I   + LD E ++ Y     A D      L   +   
Sbjct: 35 IKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFI 93

Query: 59 IQITD 63
          I++ D
Sbjct: 94 IKVQD 98

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 2  VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
          + Y L         F +   +G+I   Q LD E RS Y     A DR     +   +   
Sbjct: 36 IKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFI 94

Query: 59 IQITD 63
          I+I D
Sbjct: 95 IKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 70  IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
           ++N       L +   T   +   L +D D    G+I Y +       +F ID ++G++ 
Sbjct: 4   VWNQFF---VLEEYTGTDPLYVGKLHSDMDRGD-GSIKYILSGEGAGIVFTIDDTTGDIH 59

Query: 130 VTRGNFLSR--SNSYHINVSAMD-GGGNKCSQDAQVNINII 167
             +   L R   + Y +   A+D   G     +++  I I 
Sbjct: 60  AIQ--RLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQ 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.96
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.96
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.94
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.94
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.94
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.93
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.93
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.93
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.93
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.93
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.89
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.83
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.83
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.76
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.73
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.72
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.72
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.72
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.68
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.67
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.67
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.65
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.64
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.62
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.49
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.48
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.47
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.46
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.44
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.44
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.42
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.42
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.17
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	93.76
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	92.42
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	92.06
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	90.42
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	89.17
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	88.82
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	88.73
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	88.15
3ott_A	758	Two-component system sensor histidine kinase; beta	86.38
2y72_A	85	Collagenase, collagenase G; polycystic kidney dise	84.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	84.74

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1.5e-45  Score=298.08  Aligned_cols=206  Identities=26%  Similarity=0.421  Sum_probs=188.8

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC---CceEEEEEEEEeecCCCCCccCCCceE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFNPVEYN   77 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~---~~~~~~v~i~V~d~nd~~P~f~~~~~~   77 (212)
                      +|+|+|..+. .+.+|.|++.+|.|+++++||||....|.|.|+|.|.++   ++..+.++|.|.|+|||+|.|....|.
T Consensus        34 ~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~  112 (322)
T 2a62_A           34 KIKYILSGDG-AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYH  112 (322)
T ss_dssp             CCEEEEEETT-BTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEE
T ss_pred             EEEEEEECCC-CCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceE
Confidence            4799997653 347999999999999999999999999999999999864   567889999999999999999999999


Q ss_pred             EEEecCCCCCcEEEEEEEEeCCC---CCCceEEEEEEcCCCCCcEEEeCCccEEEEe-eecCCC--CCCeEEEEEEEEEC
Q psy11061         78 VSLRDDIQTTTAFAVVLATDRDS---DRFGTISYKIVTGKDANLFRIDRSSGELFVT-RGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        78 ~~v~e~~~~g~~v~~~~a~D~D~---~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      +.|+|+.++|+.++++.|+|+|.   |.|+.+.|+|..+.  ++|.|++.+|.|++. ..  ||  ....|.|.|.|+|.
T Consensus       113 ~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~--~~F~Id~~tG~i~~~~~~--LD~E~~~~y~l~V~a~D~  188 (322)
T 2a62_A          113 ATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPN--MDREAKEEYLVVIQAKDM  188 (322)
T ss_dssp             EEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEECT--TTEEECTTTCCEEECSSC--CCGGGCSEEEEEEEEEES
T ss_pred             EEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccCC--CCEEEecCCCEEEecccC--CCcccCCeEEEEEEEEEC
Confidence            99999999999999999999996   67889999998764  689999999999988 77  88  78899999999999


Q ss_pred             CCCC--eeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        152 GGNK--CSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       152 ~~~~--~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      ++++  ++++++|+|+|.|+|||+|.|.+..|.+.|.|+.++|+.|++|.|+|+|.|.++++
T Consensus       189 g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i  250 (322)
T 2a62_A          189 GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQS  250 (322)
T ss_dssp             CSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCC
T ss_pred             CCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceE
Confidence            8874  67899999999999999999999999999999999999999999999999987643

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=2.3e-42  Score=297.44  Aligned_cols=207  Identities=27%  Similarity=0.394  Sum_probs=188.9

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|..+.   .+.++|.|++.+|.|+++++||||....|.|.|+|.|.++  ++..+.++|.|.|+|||+|.|....
T Consensus        39 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~  118 (546)
T 1l3w_A           39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV  118 (546)
T ss_dssp             CEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSC
T ss_pred             eEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcCEecCce
Confidence            5899996543   2357999999999999999999999999999999999875  4677999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCCC--CCCeEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFLS--RSNSYHIN  145 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~  145 (212)
                      |.+.|.|+.++|+.++++.|+|+|.+   .|+.++|+|..+.    ..++|.|++.+|.|++. +.  ||  ....|.|.
T Consensus       119 y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~--LD~E~~~~y~l~  196 (546)
T 1l3w_A          119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG--LDREKFPEYTLT  196 (546)
T ss_dssp             EEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC--CCTTTCCEEEEE
T ss_pred             eEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccC--CCcccCceEEEE
Confidence            99999999999999999999999998   6889999998765    35799999999999985 67  77  78999999


Q ss_pred             EEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCC--CCCCee
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD--SGKFTE  210 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D--~~~~~~  210 (212)
                      |.|+|.+++.++++++|.|+|.|+|||+|.|....|.+.|.|+ ++|+.|++|.|+|+|  .|.+++
T Consensus       197 V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~  262 (546)
T 1l3w_A          197 VQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ  262 (546)
T ss_dssp             EEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSC
T ss_pred             EEEEECCCCCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcE
Confidence            9999999888889999999999999999999999999999999 999999999999999  666643

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=6.2e-42  Score=295.61  Aligned_cols=204  Identities=25%  Similarity=0.397  Sum_probs=185.7

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|.++.   .+.++|.|++.+|.|++.++||||....|.|.++|.|.++  ++.++.++|.|.|+|||+|.|....
T Consensus        33 ~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~  112 (559)
T 3q2w_A           33 SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV  112 (559)
T ss_dssp             CEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEESCSE
T ss_pred             EEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccCCCe
Confidence            5899996543   2347999999999999999999999999999999999876  5677899999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCC--CCceEEEEEEcCCCC----CcEEEeCCccEEEEee-ecCCC--CCCeEEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSD--RFGTISYKIVTGKDA----NLFRIDRSSGELFVTR-GNFLS--RSNSYHINV  146 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~--~~~~i~y~i~~~~~~----~~F~id~~~G~i~~~~-~~~ld--~~~~~~l~v  146 (212)
                      |.+.|+|+.++|+.++++.|+|+|.+  .|+.++|+|..+.+.    ++|.|++.+|.|++.. .  ||  ....|.|.|
T Consensus       113 y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~--LD~E~~~~y~l~V  190 (559)
T 3q2w_A          113 WNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG--LDREKVQQYTLII  190 (559)
T ss_dssp             EEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSC--CCTTTCCEEEEEE
T ss_pred             eEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEecc--CCcccCCEEEEEE
Confidence            99999999999999999999999987  588999999876442    6899999999999887 7  87  788999999


Q ss_pred             EEEECCC---CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCC
Q psy11061        147 SAMDGGG---NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK  207 (212)
Q Consensus       147 ~a~D~~~---~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~  207 (212)
                      +|+|+++   +.++++++|.|+|.|+|||+|+|....|.+.|.|+. +|+.|+++.|+|+|.|.
T Consensus       191 ~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~  253 (559)
T 3q2w_A          191 QATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPH  253 (559)
T ss_dssp             EEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTT
T ss_pred             EEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCC
Confidence            9999865   347889999999999999999999999999999997 89999999999999986

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=3.8e-42  Score=296.44  Aligned_cols=207  Identities=28%  Similarity=0.388  Sum_probs=189.7

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|.++.   ++.++|.|++.+|.|+++++||||....|.|.+.|.|.++  ++.++.++|.|.|+|||+|.|....
T Consensus        33 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~  112 (550)
T 3q2v_A           33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV  112 (550)
T ss_dssp             CEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBSCSE
T ss_pred             eEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccCCCc
Confidence            5899996532   3457999999999999999999999999999999999875  5678899999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCCC--CCCeEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFLS--RSNSYHIN  145 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~  145 (212)
                      |.+.|.|+.++|+.++++.|+|+|.+   .|+.+.|+|..+.    ..++|.|++.+|.|++. +.  ||  ....|.|.
T Consensus       113 y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~--LDrE~~~~y~l~  190 (550)
T 3q2v_A          113 FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG--LDRESYPTYTLV  190 (550)
T ss_dssp             EEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSC--CCTTTCSEEEEE
T ss_pred             eEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCC--CCcccCcEEEEE
Confidence            99999999999999999999999998   6889999998764    34699999999999874 67  77  88999999


Q ss_pred             EEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCee
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTE  210 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~  210 (212)
                      |+|+|++++.++++++|+|+|.|+|||+|+|.+..|.+.|.|+ ++|+.|++|.|+|+|.|.++.
T Consensus       191 V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~  254 (550)
T 3q2v_A          191 VQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPA  254 (550)
T ss_dssp             EEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTT
T ss_pred             EEEEcCCCCCeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCc
Confidence            9999998888889999999999999999999999999999999 999999999999999998753

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=7e-41  Score=270.53  Aligned_cols=200  Identities=20%  Similarity=0.301  Sum_probs=173.2

Q ss_pred             eEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCC-----CeEEEEEEEEeCC---CCceEEEEEEEEeecCCCCCccCC
Q psy11061          2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR-----SSYEFPVVATDRG---GLSTTAMVRIQITDVNDNEPIFNP   73 (212)
Q Consensus         2 i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~-----~~~~l~i~a~d~~---~~~~~~~v~i~V~d~nd~~P~f~~   73 (212)
                      ++|+|..+.   .+|.|++ +|.|+++++||||..     ..|.|.++|.|.+   +++..+.++|.|.|+|||+|.|..
T Consensus        33 ~~f~i~~~~---~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~  108 (316)
T 3ubf_A           33 ETFKIRDDN---PWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN  108 (316)
T ss_dssp             CEEEESSCC---SSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECC
T ss_pred             ceEEEeCCC---CeEEECC-CeEEEECCccChhhcccccceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCC
Confidence            456666554   6899999 999999999999984     4788888898877   358899999999999999999998


Q ss_pred             Cc--eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEE
Q psy11061         74 VE--YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAM  149 (212)
Q Consensus        74 ~~--~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~  149 (212)
                      ..  |.+.|.|+.++|+.++++.|+|+|.+.+  +.|+|..++..++|.|++.+|.|++.+.  ||  ....|.|.|.|+
T Consensus       109 ~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~--lD~e~~~~y~l~V~A~  184 (316)
T 3ubf_A          109 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGT--DLFQLDMEYVLYVKAE  184 (316)
T ss_dssp             SSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSS--CCCCTTCEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCc--CCcccCcEEEEEEEEE
Confidence            76  8999999999999999999999999876  9999998777789999999999999999  77  788899999999


Q ss_pred             ECCC----CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        150 DGGG----NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       150 D~~~----~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      |+++    +..++++.|+|.|.| |||+|.|.+..|.+.|.|+.++|+.|++|.|+|+|- ...+|
T Consensus       185 D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~Dn-~~i~Y  248 (316)
T 3ubf_A          185 DQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD-REIRY  248 (316)
T ss_dssp             ESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTTC-CCEEE
T ss_pred             eCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCCC-CEEEE
Confidence            9985    345678889999999 999999999999999999999999999999999993 33444

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=6.5e-41  Score=301.13  Aligned_cols=206  Identities=27%  Similarity=0.393  Sum_probs=188.5

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|..+.   .+.++|.|++.+|.|+++++||||....|.|.|+|.|.++  ++..+.++|.|.|+|||+|.|....
T Consensus       188 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~  267 (880)
T 1q55_A          188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV  267 (880)
T ss_dssp             CEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSC
T ss_pred             eEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCCCccCCc
Confidence            4899996543   2347999999999999999999999999999999999875  5678999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCCC--CCCeEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFLS--RSNSYHIN  145 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~  145 (212)
                      |.+.|+|+.++|+.++++.|+|+|.+   .|+.++|+|..+.    ..++|.|++.+|.|++. ..  ||  ....|.|.
T Consensus       268 y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~--LDrE~~~~y~l~  345 (880)
T 1q55_A          268 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG--LDREKFPEYTLT  345 (880)
T ss_dssp             EEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC--CCTTTCCEEEEE
T ss_pred             EEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEeccc--CCHHHcceeEEE
Confidence            99999999999999999999999998   6889999998765    35799999999999985 57  77  78999999


Q ss_pred             EEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCC--CCCCe
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD--SGKFT  209 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D--~~~~~  209 (212)
                      |+|+|.+++..+++++|+|+|.|+|||+|+|.+..|.+.|.|+ ++|+.|++|.|+|+|  .|.++
T Consensus       346 V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~  410 (880)
T 1q55_A          346 VQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAW  410 (880)
T ss_dssp             EEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTS
T ss_pred             EEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCc
Confidence            9999999888889999999999999999999999999999999 999999999999999  66664

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=6.7e-39  Score=245.20  Aligned_cols=170  Identities=24%  Similarity=0.394  Sum_probs=149.0

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC---CceEEEEEEEEeecCCCCCccCCCceE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFNPVEYN   77 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~---~~~~~~v~i~V~d~nd~~P~f~~~~~~   77 (212)
                      +|+|+|..+. ...+|.|++.+|.|+++++||||....|.|.|.|.|.++   ++..+.++|.|.|+|||+|.|....|.
T Consensus        35 ~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~  113 (215)
T 2a4e_A           35 NIKYILSGEG-AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYH  113 (215)
T ss_dssp             CEEEEEEETT-BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCEEEEEEEEEEEEECCCCCCCEESSSSEE
T ss_pred             eEEEEEECCC-CCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCCCCcccccEEEEEEEeeCCCCCCCccCCceE
Confidence            5899997653 347999999999999999999999999999999999874   567899999999999999999999999


Q ss_pred             EEEecCCCCCcEEEEEEEEeCCC---CCCceEEEEEEcCCCCCcEEEeCCccEEEEe-eecCCC--CCCeEEEEEEEEEC
Q psy11061         78 VSLRDDIQTTTAFAVVLATDRDS---DRFGTISYKIVTGKDANLFRIDRSSGELFVT-RGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        78 ~~v~e~~~~g~~v~~~~a~D~D~---~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      +.|+|+.+.|+.++++.|+|+|.   |.|++++|+|..+.  ++|.|++.+|.|++. +.  ||  ....|.|.|.|+|.
T Consensus       114 ~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~--~~F~Id~~tG~I~~~~~~--LD~E~~~~y~l~V~A~D~  189 (215)
T 2a4e_A          114 ANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPN--MDREAKEEYHVVIQAKDM  189 (215)
T ss_dssp             EEEETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEEST--TTEEECTTTCEEEECSSC--CCSSSCSEEEEEEEEETT
T ss_pred             EEEECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCCC--CcEEEeCCccEEEEcccC--CCcccCCEEEEEEEEEEC
Confidence            99999999999999999999997   77889999999764  589999999999998 77  87  78899999999999


Q ss_pred             CCC--CeeeeEEEEEEEeeCCCCCCe
Q psy11061        152 GGN--KCSQDAQVNINIINSHMPIPL  175 (212)
Q Consensus       152 ~~~--~~~~~~~v~I~v~d~nd~~P~  175 (212)
                      +++  .++++++|+|+|.|+|||+|+
T Consensus       190 g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          190 GGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             TTCTTCCEEEEEEEEEEEC-------
T ss_pred             CCCCCCceeEEEEEEEEEECCCCCCC
Confidence            876  478899999999999999995

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=5.6e-39  Score=268.49  Aligned_cols=198  Identities=23%  Similarity=0.345  Sum_probs=176.8

Q ss_pred             CeEEEEcCCCCCcCceEEeC--------CceEEEECCcCCcCCC---CeEEEEEEEEeCC-----CCceEEEEEEEEeec
Q psy11061          1 MVNYTLGESPSRTNHFYMKS--------VSGEICIAQDLDFESR---SSYEFPVVATDRG-----GLSTTAMVRIQITDV   64 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~--------~tg~i~~~~~lD~E~~---~~~~l~i~a~d~~-----~~~~~~~v~i~V~d~   64 (212)
                      +|+|+|..+. ....|.|++        .+|.|+++++||||..   ..|.|.|.|+|.|     +.++.+.|+|.|.|+
T Consensus        26 ~v~Ysi~~~~-~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~Dv  104 (419)
T 3ubh_A           26 KSVFQLEKET-DKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDV  104 (419)
T ss_dssp             CEEEECCCSS-TTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECC
T ss_pred             eEEEEEecCC-CCceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEEC
Confidence            5899997654 347888887        7999999999999997   6999999999987     356789999999999


Q ss_pred             CCCCCccCCCc--eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCC
Q psy11061         65 NDNEPIFNPVE--YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSN  140 (212)
Q Consensus        65 nd~~P~f~~~~--~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~  140 (212)
                      |||+|.|....  |.+.|.|+.++|+.++++.|+|+|.+.|  +.|+|..++..++|.|++.+|.|++...  +|  ...
T Consensus       105 NDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~~~~F~I~~~tG~i~~~~~--ld~e~~~  180 (419)
T 3ubh_A          105 NDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGT--DLFQLDM  180 (419)
T ss_dssp             CCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESSSSCEEECTTTCEEEECSS--SCCCBTC
T ss_pred             CCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCCCCeEEEeCCceEEEEecc--ccccccc
Confidence            99999999877  7899999999999999999999999876  9999988777789999999999999887  76  567


Q ss_pred             eEEEEEEEEECCCC----CeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCC
Q psy11061        141 SYHINVSAMDGGGN----KCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD  204 (212)
Q Consensus       141 ~~~l~v~a~D~~~~----~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D  204 (212)
                      .|.|.|.|+|++++    ..++++.++|.|.| ||++|.|.+..|.+.|.|+.++|+.|++|.|+|+|
T Consensus       181 ~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d  247 (419)
T 3ubh_A          181 EYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA  247 (419)
T ss_dssp             EEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS
T ss_pred             EEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC
Confidence            89999999998764    45678889999999 99999999999999999999999999999999998

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=3.4e-39  Score=278.50  Aligned_cols=207  Identities=24%  Similarity=0.356  Sum_probs=186.6

Q ss_pred             CeEEEEcCCCC---CcCceEEeCCceEEEECC-cCCcCCCCeEEEEEEEEeCC-----CCceEEEEEEEEeecCCCCCcc
Q psy11061          1 MVNYTLGESPS---RTNHFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRG-----GLSTTAMVRIQITDVNDNEPIF   71 (212)
Q Consensus         1 ~i~Y~i~~~~~---~~~~F~id~~tg~i~~~~-~lD~E~~~~~~l~i~a~d~~-----~~~~~~~v~i~V~d~nd~~P~f   71 (212)
                      +|+|+|.++..   ..++|.|++.+|.|++.+ +||||....|.|.|+|.|.+     ++++++.++|.|.|+|||+|.|
T Consensus       144 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f  223 (559)
T 3q2w_A          144 MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF  223 (559)
T ss_dssp             CCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEE
T ss_pred             EEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCcc
Confidence            48999966541   127899999999999988 99999999999999999974     3789999999999999999999


Q ss_pred             CCCceEEEEecCCCCCcEEEEEEEEeCCCCC--CceEEEEEEcCCCCCcEEE----eCCccEEEEeeecCCC--CCCeEE
Q psy11061         72 NPVEYNVSLRDDIQTTTAFAVVLATDRDSDR--FGTISYKIVTGKDANLFRI----DRSSGELFVTRGNFLS--RSNSYH  143 (212)
Q Consensus        72 ~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~--~~~i~y~i~~~~~~~~F~i----d~~~G~i~~~~~~~ld--~~~~~~  143 (212)
                      ....|.+.|+|+. +|+.++.+.|+|+|.+.  ++.+.|+|..++..++|.|    +..+|.|++.++  ||  ....|.
T Consensus       224 ~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~--LD~E~~~~y~  300 (559)
T 3q2w_A          224 TAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKP--IDFETNRMFV  300 (559)
T ss_dssp             SSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSC--CCTTTCSEEE
T ss_pred             ccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCC--CCCccCceEE
Confidence            9999999999996 89999999999999975  5689999998888899999    468999999999  88  889999


Q ss_pred             EEEEEEECCC------CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        144 INVSAMDGGG------NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       144 l~v~a~D~~~------~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      |.|.|+|.++      ++.+++++|+|+|.|+|| +|.|.+..|.+.|.|+.++|+.|++|.|+|+|.|.++++
T Consensus       301 l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i  373 (559)
T 3q2w_A          301 LTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNI  373 (559)
T ss_dssp             EEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCE
T ss_pred             EEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCce
Confidence            9999999742      456789999999999999 699999999999999999999999999999999877654

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=8e-39  Score=267.54  Aligned_cols=202  Identities=22%  Similarity=0.331  Sum_probs=180.5

Q ss_pred             eEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC------CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         2 i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~------~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      ++|+|..+. ..++|.|++.+|.|++.+.||||....|.|+|+|+|.|+      +++++.++|.|.| |||+|.|.+..
T Consensus       146 ~~y~i~~~~-~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~  223 (419)
T 3ubh_A          146 IHYFIVRDR-TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS  223 (419)
T ss_dssp             EEEEEEEES-SSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSC
T ss_pred             eEEEEEeCC-CCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCe
Confidence            689997654 358999999999999999999999999999999999864      3677889999999 99999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEE-cCCCCCcEEEeCCccEEEEeeecCCC--CC---CeEEEEEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGKDANLFRIDRSSGELFVTRGNFLS--RS---NSYHINVSAM  149 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~-~~~~~~~F~id~~~G~i~~~~~~~ld--~~---~~~~l~v~a~  149 (212)
                      |.+.|+|+.+.|+.++++.|+|+|   ++.++|+|. .++..++|.|++.+|.|++.+.  ||  ..   ..|.|.|.|+
T Consensus       224 y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~--LD~E~~~~~~~y~l~V~a~  298 (419)
T 3ubh_A          224 YEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKE--LDFEDLRQPHVYSLIVTAT  298 (419)
T ss_dssp             EEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSC--CCTTCTTSCSEEEEEEEEE
T ss_pred             eEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcc--cCccccccccEEEEEEEEE
Confidence            999999999999999999999987   667999998 4566789999999999999999  88  32   3799999999


Q ss_pred             ECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEE-EEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        150 DGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSF-VVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       150 D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~-~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      |.++ ..+++++|+|.|.|+|||+|.|....|.. .|.|+.++|+.|++|.|+|+|.|.++++
T Consensus       299 dd~~-~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v  360 (419)
T 3ubh_A          299 EDSG-GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEI  360 (419)
T ss_dssp             CTTT-SCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCE
T ss_pred             eCCC-CcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEE
Confidence            7543 46678999999999999999999999987 7999999999999999999999998754

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.4e-39  Score=280.20  Aligned_cols=206  Identities=25%  Similarity=0.383  Sum_probs=185.9

Q ss_pred             CeEEEEcCCCC---CcCceEEeCCceEEEEC-CcCCcCCCCeEEEEEEEEeCC--CCceEEEEEEEEeecCCCCCccCCC
Q psy11061          1 MVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPIFNPV   74 (212)
Q Consensus         1 ~i~Y~i~~~~~---~~~~F~id~~tg~i~~~-~~lD~E~~~~~~l~i~a~d~~--~~~~~~~v~i~V~d~nd~~P~f~~~   74 (212)
                      +|+|+|.++..   ..++|.|++.+|.|++. ++||||....|.|.|+|+|.|  ++++++.++|.|.|+|||+|.|...
T Consensus       151 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~  230 (546)
T 1l3w_A          151 VLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK  230 (546)
T ss_dssp             CCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCS
T ss_pred             EEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccc
Confidence            47999976541   34799999999999995 789999999999999999987  4789999999999999999999999


Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCC--CCCCceEEEEEEcCCCCCcEEEe----CCccEEEEeeecCCC--CCCeEEEEE
Q psy11061         75 EYNVSLRDDIQTTTAFAVVLATDRD--SDRFGTISYKIVTGKDANLFRID----RSSGELFVTRGNFLS--RSNSYHINV  146 (212)
Q Consensus        75 ~~~~~v~e~~~~g~~v~~~~a~D~D--~~~~~~i~y~i~~~~~~~~F~id----~~~G~i~~~~~~~ld--~~~~~~l~v  146 (212)
                      .|.+.|+|+ +.|+.++++.|+|+|  .+.|+.+.|+|.. +..++|.|+    ..+|.|++.++  ||  ....|.|.|
T Consensus       231 ~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~-~~~~~F~I~~d~~~~~G~i~~~~~--LD~E~~~~y~l~V  306 (546)
T 1l3w_A          231 TYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKG--LDFELRKQYVLQI  306 (546)
T ss_dssp             EEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSC--CCCSSCCCEEEEE
T ss_pred             cceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe-CCCceEEEEecCCCCeEEEEECcc--CCcccccEEEEEE
Confidence            999999999 999999999999999  6688899999987 667899996    26899999999  88  788999999


Q ss_pred             EEEECCC---CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        147 SAMDGGG---NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       147 ~a~D~~~---~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      .|+|+++   +..+++++|+|+|.|+|| +|.|.+..|.+.|.|+.++|+.|++|.|+|+|.|.++++
T Consensus       307 ~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i  373 (546)
T 1l3w_A          307 TVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL  373 (546)
T ss_dssp             CCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCE
T ss_pred             EEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceE
Confidence            9999874   346788999999999999 999999999999999999999999999999999877654

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=9.5e-39  Score=275.27  Aligned_cols=206  Identities=26%  Similarity=0.401  Sum_probs=186.0

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEE-CCcCCcCCCCeEEEEEEEEeCC--CCceEEEEEEEEeecCCCCCccCCC
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICI-AQDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPIFNPV   74 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~-~~~lD~E~~~~~~l~i~a~d~~--~~~~~~~v~i~V~d~nd~~P~f~~~   74 (212)
                      +|+|+|.++.   ...++|.|++.+|.|++ .++||||....|.|.|+|+|.|  ++++++.++|.|.|+|||+|.|...
T Consensus       145 ~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~  224 (550)
T 3q2v_A          145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS  224 (550)
T ss_dssp             CCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSS
T ss_pred             EEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecc
Confidence            4799996643   13479999999999998 5789999999999999999975  5789999999999999999999999


Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCCCCCCc--eEEEEEEcCCCCCcEEEe----CCccEEEEeeecCCC--CCCeEEEEE
Q psy11061         75 EYNVSLRDDIQTTTAFAVVLATDRDSDRFG--TISYKIVTGKDANLFRID----RSSGELFVTRGNFLS--RSNSYHINV  146 (212)
Q Consensus        75 ~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~--~i~y~i~~~~~~~~F~id----~~~G~i~~~~~~~ld--~~~~~~l~v  146 (212)
                      .|.+.|.|+ ++|+.++++.|+|+|.+.++  .+.|+|.. +..++|.|+    ..+|.|++.+.  ||  ....|.|.|
T Consensus       225 ~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~-~~~~~F~i~~d~~~~tG~i~~~~~--LD~E~~~~y~l~V  300 (550)
T 3q2v_A          225 TYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKG--LDFEAKQQYILHV  300 (550)
T ss_dssp             EEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESS-CSSCCEEEEECTTTCCEEEEESSC--CCTTTCSEEEEEE
T ss_pred             eeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEe-CCCCcEEEEecCCCccEEEEeccc--CCccccceEEEEE
Confidence            999999999 99999999999999998766  56799986 667899998    68999999999  88  889999999


Q ss_pred             EEEECCC---CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        147 SAMDGGG---NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       147 ~a~D~~~---~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      .|+|+++   +..+++++|+|+|.|+|| +|.|....|.+.|+|+.++|+.|+++.|+|+|.|.++++
T Consensus       301 ~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i  367 (550)
T 3q2v_A          301 RVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKI  367 (550)
T ss_dssp             EEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCC
T ss_pred             EEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCE
Confidence            9999874   346788999999999999 999999999999999999999999999999999987754

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=4.1e-38  Score=283.03  Aligned_cols=206  Identities=25%  Similarity=0.382  Sum_probs=185.8

Q ss_pred             CeEEEEcCCCC---CcCceEEeCCceEEEEC-CcCCcCCCCeEEEEEEEEeCC--CCceEEEEEEEEeecCCCCCccCCC
Q psy11061          1 MVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITDVNDNEPIFNPV   74 (212)
Q Consensus         1 ~i~Y~i~~~~~---~~~~F~id~~tg~i~~~-~~lD~E~~~~~~l~i~a~d~~--~~~~~~~v~i~V~d~nd~~P~f~~~   74 (212)
                      +|+|+|.++.+   ..++|.|++.+|.|++. ++||||....|.|.|+|+|.|  ++++++.++|.|.|+|||+|.|...
T Consensus       300 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~  379 (880)
T 1q55_A          300 VLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK  379 (880)
T ss_dssp             CCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCS
T ss_pred             EEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCcccc
Confidence            48999976541   35799999999999996 789999999999999999987  4789999999999999999999999


Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCC--CCCCceEEEEEEcCCCCCcEEEe--C--CccEEEEeeecCCC--CCCeEEEEE
Q psy11061         75 EYNVSLRDDIQTTTAFAVVLATDRD--SDRFGTISYKIVTGKDANLFRID--R--SSGELFVTRGNFLS--RSNSYHINV  146 (212)
Q Consensus        75 ~~~~~v~e~~~~g~~v~~~~a~D~D--~~~~~~i~y~i~~~~~~~~F~id--~--~~G~i~~~~~~~ld--~~~~~~l~v  146 (212)
                      .|.+.|+|+ ++|+.++++.|+|+|  .+.|+.+.|+|.. +..++|.|+  +  .+|.|++.++  ||  ....|.|.|
T Consensus       380 ~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~~~--LD~E~~~~y~l~V  455 (880)
T 1q55_A          380 TYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKG--LDFELRKQYVLQI  455 (880)
T ss_dssp             EEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSC--CCCSSCCCEEEEE
T ss_pred             ceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEec-CCCceEEEEecCCCceEEEecccC--CCcccCCcEEEEE
Confidence            999999999 999999999999999  5678899999987 667899995  3  6799999999  88  788999999


Q ss_pred             EEEECCC---CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        147 SAMDGGG---NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       147 ~a~D~~~---~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      .|+|+++   +..+++++|+|+|.|+|| +|+|.+..|.+.|.|+.++|+.|++|.|+|+|.|.++++
T Consensus       456 ~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v  522 (880)
T 1q55_A          456 TVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL  522 (880)
T ss_dssp             CCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCE
T ss_pred             EEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcE
Confidence            9999874   346788999999999999 999999999999999999999999999999999877643

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.8e-39  Score=249.67  Aligned_cols=162  Identities=15%  Similarity=0.181  Sum_probs=147.0

Q ss_pred             cCceEEeCCceEEEECCcCCcCCCCeE------------EEEEEEEeCCC----CceEEEEEEEEeecCCCCCc------
Q psy11061         13 TNHFYMKSVSGEICIAQDLDFESRSSY------------EFPVVATDRGG----LSTTAMVRIQITDVNDNEPI------   70 (212)
Q Consensus        13 ~~~F~id~~tg~i~~~~~lD~E~~~~~------------~l~i~a~d~~~----~~~~~~v~i~V~d~nd~~P~------   70 (212)
                      .++|.|++.+|.|+++++||||....|            .|+|.|.|.|+    +++++.|.|.|.|+|||+|.      
T Consensus        55 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~  134 (246)
T 2x2u_A           55 NNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKP  134 (246)
T ss_dssp             CCSEEECTTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCH
T ss_pred             CCEEEECCCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccc
Confidence            479999999999999999999999999            99999999873    56788999999999999999      


Q ss_pred             ----cCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEE
Q psy11061         71 ----FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHI  144 (212)
Q Consensus        71 ----f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l  144 (212)
                          |....|.+.|+|+.++|+.++++.|+|+|.+.|+.++|+|..++ .++|.|++.+|.|++.+.  ||  ....|.|
T Consensus       135 ~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l  211 (246)
T 2x2u_A          135 RELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTRWA--LDREQREKYEL  211 (246)
T ss_dssp             HHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTTCCEEEESSC--BCTTTCSEEEE
T ss_pred             cccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECCcCEEEeCCc--cCccccceEEE
Confidence                99999999999999999999999999999999999999999765 579999999999999999  88  7899999


Q ss_pred             EEEEEE-CCCCCeeeeEEEEEEEeeCCCCCCeEe
Q psy11061        145 NVSAMD-GGGNKCSQDAQVNINIINSHMPIPLFQ  177 (212)
Q Consensus       145 ~v~a~D-~~~~~~~~~~~v~I~v~d~nd~~P~f~  177 (212)
                      .|.|+| .++|+++++++|.|+|.|+|||+|.|.
T Consensus       212 ~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          212 VAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             EEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             EEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence            999998 566888999999999999999999995

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=2.2e-36  Score=230.75  Aligned_cols=167  Identities=26%  Similarity=0.385  Sum_probs=152.5

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCccCCCceEEEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSL   80 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~f~~~~~~~~v   80 (212)
                      +++|+|..+. ..++|.|++.+|.|+++++||||....|.|.|.|.|.++. ..+.++|.|.|+|||+|.|....|.+.|
T Consensus        41 ~~~y~i~~~~-~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~D~~~~-~~~~v~I~V~DvNDn~P~f~~~~y~~~v  118 (210)
T 3mvs_A           41 PLVFGVSGEE-ASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVNDNAPTFHNQPYSVRI  118 (210)
T ss_dssp             CCEEEEESHH-HHHHEEECTTTCEEEESSCCCTTTCCEEEEEEEEECSSCE-EEEEEEEEEECCCCCCCEECSCSEEEEE
T ss_pred             cEEEEEeCCC-CCCcEEEeCCCCEEEECCccCCcccceEEEEEEEEeCCCC-EEEEEEEEEEeCCCCCCcCCCceEEEEE
Confidence            3689996653 2478999999999999999999999999999999998654 6789999999999999999999999999


Q ss_pred             ecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECCC-CCee
Q psy11061         81 RDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGGG-NKCS  157 (212)
Q Consensus        81 ~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~~-~~~~  157 (212)
                      +|+.++|+.++++.|+|+|.+.|+.+.|+|..+  .++|.|++.+|.|++.+.  ||  ....|.|.|.|+|+++ ++++
T Consensus       119 ~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~--~~~F~Id~~tG~i~~~~~--LD~E~~~~y~l~V~a~D~g~~~~~s  194 (210)
T 3mvs_A          119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDSARGIVTVIQE--LDYEVTQAYQLTVNATDQDKTRPLS  194 (210)
T ss_dssp             ETTCCTTCEEEECCEECCSSGGGGCEEEEESSC--CSSEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEECCSSSCCE
T ss_pred             ECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCC--CCCEEEeCCcEEEEECCc--CCCcccceEEEEEEEEECCCCCCCE
Confidence            999999999999999999999999999999754  469999999999999999  88  7899999999999984 5678


Q ss_pred             eeEEEEEEEeeCCCCC
Q psy11061        158 QDAQVNINIINSHMPI  173 (212)
Q Consensus       158 ~~~~v~I~v~d~nd~~  173 (212)
                      ++++|+|.|.|+||+|
T Consensus       195 ~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          195 TLANLAIIITDMQDMD  210 (210)
T ss_dssp             EEEEEEEEEECCCCCC
T ss_pred             EEEEEEEEEEccCCCC
Confidence            8999999999999986

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=7.6e-36  Score=228.34  Aligned_cols=166  Identities=28%  Similarity=0.388  Sum_probs=151.3

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|.++.   .+.++|.|++.+|.|+++++||||....|.|.|.|.|.++  ++..+.++|.|.|+|||+|.|....
T Consensus        33 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~  112 (213)
T 3qrb_A           33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV  112 (213)
T ss_dssp             CEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCEESCSE
T ss_pred             eEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCcccceEEEEEEEEEccCCCCccCCCc
Confidence            5899996632   2346999999999999999999999999999999999875  6788999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCCC--CCCeEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFLS--RSNSYHIN  145 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~  145 (212)
                      |.+.|.|+.++|+.++++.|+|+|.+   .|+.+.|+|..++    ..++|.|++.+|.|++. +.  ||  ....|.|.
T Consensus       113 y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~--LD~E~~~~y~l~  190 (213)
T 3qrb_A          113 FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG--LDRESYPTYTLV  190 (213)
T ss_dssp             EEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSC--CCTTTCCEEEEE
T ss_pred             eEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCC--CCCccCceEEEE
Confidence            99999999999999999999999998   7899999998764    34699999999999987 67  87  78899999


Q ss_pred             EEEEECCCCCeeeeEEEEEEEee
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      |.|+|.++++++++++|+|+|.|
T Consensus       191 V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          191 VQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             EEEETGGGTSCEEEEEEEEEEEC
T ss_pred             EEEEeCCCCCceEEEEEEEEEEC
Confidence            99999998889999999999986

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=8.9e-36  Score=228.03  Aligned_cols=166  Identities=25%  Similarity=0.434  Sum_probs=150.7

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|.++.   .+.++|.|++.+|.|+++++||||....|.|.|.|.|.|+  ++..+.++|.|.|+|||+|.|....
T Consensus        33 ~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~  112 (215)
T 2qvi_A           33 SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV  112 (215)
T ss_dssp             CEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSSE
T ss_pred             eEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCceeeeEEEEEEEeECCCCCCcccCce
Confidence            5899997643   2358999999999999999999999999999999999885  5688999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCC--CCCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCCC--CCCeEEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDS--DRFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFLS--RSNSYHINV  146 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~--~~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~v  146 (212)
                      |.+.|+|+.++|+.++++.|+|+|.  +.|++++|+|..++    ..+.|.|++.+|.|++. +.  ||  ....|.|.|
T Consensus       113 y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~--LD~E~~~~y~l~V  190 (215)
T 2qvi_A          113 WNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG--LDREKVQQYTLII  190 (215)
T ss_dssp             EEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCC--CCTTTCSEEEEEE
T ss_pred             eEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCC--CCcccCCeEEEEE
Confidence            9999999999999999999999998  67899999999875    45799999999999985 67  87  789999999


Q ss_pred             EEEECCCC---CeeeeEEEEEEEee
Q psy11061        147 SAMDGGGN---KCSQDAQVNINIIN  168 (212)
Q Consensus       147 ~a~D~~~~---~~~~~~~v~I~v~d  168 (212)
                      .|+|.+++   +++++++|+|+|.|
T Consensus       191 ~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          191 QATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             ECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             EEEECCCCCCCCcceEEEEEEEEEC
Confidence            99999877   67889999999976

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=4.1e-35  Score=225.00  Aligned_cols=166  Identities=23%  Similarity=0.337  Sum_probs=148.9

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|..+.   ++.++|.|++.+|.|+++++||||....|.|.|.|.|.++  +++++.++|.|.|+|||+|.|....
T Consensus        33 ~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~  112 (218)
T 3k5r_A           33 GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGP  112 (218)
T ss_dssp             TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSCS
T ss_pred             eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCCc
Confidence            4799995421   3468999999999999999999999999999999999876  5688999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCC--CCCceEEEEEEcCCCC----CcEEEeCCccEEEEe---eecCCC--C--CCeE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDS--DRFGTISYKIVTGKDA----NLFRIDRSSGELFVT---RGNFLS--R--SNSY  142 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~--~~~~~i~y~i~~~~~~----~~F~id~~~G~i~~~---~~~~ld--~--~~~~  142 (212)
                      |.+.|+|+.+.|+.++++.|+|+|.  +.|+.+.|+|..+...    ++|.|++.+|.|++.   +.  ||  .  ...|
T Consensus       113 y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~--LD~E~~~~~~y  190 (218)
T 3k5r_A          113 YIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPAL--LDRETLENPKY  190 (218)
T ss_dssp             EEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGG--CCGGGCSCSEE
T ss_pred             eEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCC--CCccccCCCeE
Confidence            9999999999999999999999999  6789999999876543    689999999999887   46  88  5  6699


Q ss_pred             EEEEEEEECC--CCCeeeeEEEEEEEee
Q psy11061        143 HINVSAMDGG--GNKCSQDAQVNINIIN  168 (212)
Q Consensus       143 ~l~v~a~D~~--~~~~~~~~~v~I~v~d  168 (212)
                      .|.|.|+|.+  .|+++++++|+|+|.|
T Consensus       191 ~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          191 ELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             EEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence            9999999998  6788899999999986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=1.6e-34  Score=219.27  Aligned_cols=160  Identities=29%  Similarity=0.466  Sum_probs=146.3

Q ss_pred             EEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC---CceEEEEEEEEeecCCCCCccCCCceEEE
Q psy11061          3 NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFNPVEYNVS   79 (212)
Q Consensus         3 ~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~---~~~~~~v~i~V~d~nd~~P~f~~~~~~~~   79 (212)
                      +|+|.++. ..++|.|++.+|.|+++++||||....|.|.|.|.|.++   +++.+.++|.|.|+|||+|.|....|.+.
T Consensus        34 ~Y~i~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  112 (203)
T 3ppe_A           34 MYIIEGES-ANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS  112 (203)
T ss_dssp             EEEEEETT-BTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEE
T ss_pred             EEEEecCC-CCCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCCcccceEEEEEEEcCCCCCCCCccCCccEEE
Confidence            79997654 357999999999999999999999999999999999974   67889999999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEEeCCC---CCCceEEEEEEcCCCCCcEEEeCCccEEEEe-eecCCC--CCCeEEEEEEEEEC-C
Q psy11061         80 LRDDIQTTTAFAVVLATDRDS---DRFGTISYKIVTGKDANLFRIDRSSGELFVT-RGNFLS--RSNSYHINVSAMDG-G  152 (212)
Q Consensus        80 v~e~~~~g~~v~~~~a~D~D~---~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~v~a~D~-~  152 (212)
                      |+|+.++|+.++++.|+|+|.   +.|+++.|+|..++  ++|.|+ .+|.|++. +.  ||  ....|.|.|.|+|. |
T Consensus       113 v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~--~~F~I~-~tG~i~~~~~~--LD~E~~~~y~l~V~A~D~~G  187 (203)
T 3ppe_A          113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVD-DSGVIFTARAD--LDRESQSAYEIIVKAKDALG  187 (203)
T ss_dssp             EETTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEEST--TTEEEC-TTSEEEESCSC--CCTTTCSEEEEEEEEEETTC
T ss_pred             EeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCCC--CcEEEe-CCeEEEECCcC--CCcccCCEEEEEEEEEeCCC
Confidence            999999999999999999994   67889999999765  499999 99999998 88  88  78999999999998 5


Q ss_pred             CCCeeeeEEEEEEEee
Q psy11061        153 GNKCSQDAQVNINIIN  168 (212)
Q Consensus       153 ~~~~~~~~~v~I~v~d  168 (212)
                      .|+++++++|+|+|.|
T Consensus       188 ~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          188 LTGESSTATVIIRLTD  203 (203)
T ss_dssp             CCCSSSEEEEEEEEEC
T ss_pred             CCCCeEEEEEEEEEEC
Confidence            5667889999999986

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=2.4e-35  Score=224.55  Aligned_cols=163  Identities=26%  Similarity=0.432  Sum_probs=143.8

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC---CceEEEEEEEEeecCCCCCccCCCceE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFNPVEYN   77 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~---~~~~~~v~i~V~d~nd~~P~f~~~~~~   77 (212)
                      +|+|+|..+. ..++|.|++.+|.|+++++||||....|.|.|.|.|.++   ++..+.++|.|.|+|||+|.|....|.
T Consensus        34 ~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~  112 (207)
T 3lnd_A           34 SLKYILSGDG-AGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYT  112 (207)
T ss_dssp             TBCCCCCSSS-BTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEEE
T ss_pred             eEEEEEECCC-CCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCCccCCCceE
Confidence            4789997654 346999999999999999999999999999999999863   678889999999999999999999999


Q ss_pred             EEEecCCCCCcEEEEEEEEeCCC---CCCceEEEEEEcCCCCCcEEEeCCccEEEEe-eecCCC--CCCeEEEEEEEEEC
Q psy11061         78 VSLRDDIQTTTAFAVVLATDRDS---DRFGTISYKIVTGKDANLFRIDRSSGELFVT-RGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        78 ~~v~e~~~~g~~v~~~~a~D~D~---~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~-~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      +.|.|+.+.|+.++++.|+|+|.   +.|+.+.|+|..++  ++|.|++.+|.|++. +.  ||  ....|.|.|.|+|.
T Consensus       113 ~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~--~~F~Id~~tG~i~~~~~~--lD~E~~~~y~l~V~A~D~  188 (207)
T 3lnd_A          113 ATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLN--MDRENREQYQVVIQAKDM  188 (207)
T ss_dssp             EEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEESG--GGEEECTTTCEEEECCSS--CCC--CCEEEEEEEEESG
T ss_pred             EEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCCC--CCEEEcCCCcEEEECccc--CCcccCCEEEEEEEEEEC
Confidence            99999999999999999999998   77889999999764  599999999999998 77  88  78999999999999


Q ss_pred             CCC--CeeeeEEEEEEEee
Q psy11061        152 GGN--KCSQDAQVNINIIN  168 (212)
Q Consensus       152 ~~~--~~~~~~~v~I~v~d  168 (212)
                      +++  .++++++|+|+|.|
T Consensus       189 g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          189 GGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             GGCTTCBEEEEEEEEEEEC
T ss_pred             CCCCCCcEeEEEEEEEEeC
Confidence            876  67899999999986

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=3.1e-32  Score=219.94  Aligned_cols=164  Identities=20%  Similarity=0.307  Sum_probs=142.7

Q ss_pred             eEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC------CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         2 i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~------~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      ++|+|..+. ..++|.|++.+|.|+++++||||....|.|.|.|.|.|+      ++.++.++|.|.| |||+|.|....
T Consensus       141 i~Y~i~~~~-~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~  218 (316)
T 3ubf_A          141 IHYFIVRDR-TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS  218 (316)
T ss_dssp             EEEEEEEEE-SSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSS
T ss_pred             eEEEEEeCC-CCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCC
Confidence            689997543 358999999999999999999999999999999999874      4677889999999 99999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEE-cCCCCCcEEEeCCccEEEEeeecCCC--CC---CeEEEEEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGKDANLFRIDRSSGELFVTRGNFLS--RS---NSYHINVSAM  149 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~-~~~~~~~F~id~~~G~i~~~~~~~ld--~~---~~~~l~v~a~  149 (212)
                      |.+.|+|+.++|+.++++.|+|+|   ++.++|+|. .++..++|.|++.+|.|++.+.  ||  ..   ..|.|.|.|+
T Consensus       219 y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~--LD~E~~~~~~~y~l~V~A~  293 (316)
T 3ubf_A          219 YEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKE--LDFEDLRQPHVYSLIVTAT  293 (316)
T ss_dssp             EEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSC--CCSSCTTSCSEEEEEEEEE
T ss_pred             ceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCc--CCccccCCCceEEEEEEEE
Confidence            999999999999999999999998   667999998 5667789999999999999999  88  33   6899999999


Q ss_pred             ECCCCCeeeeEEEEEEEeeCCCCC
Q psy11061        150 DGGGNKCSQDAQVNINIINSHMPI  173 (212)
Q Consensus       150 D~~~~~~~~~~~v~I~v~d~nd~~  173 (212)
                      |.++ ..+++++|+|+|.|+||||
T Consensus       294 dd~g-~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          294 EDSG-GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             ESSS-SCEEEEEEEEEEECC----
T ss_pred             ECCC-CCEEEEEEEEEEEecCCCC
Confidence            5444 3678899999999999986

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=2.9e-32  Score=220.26  Aligned_cols=162  Identities=30%  Similarity=0.425  Sum_probs=145.1

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEEC-CcCCcCCCCeEEEEEEEEeCCC----CceEEEEEEEEeecCCCCCccCCCc
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITDVNDNEPIFNPVE   75 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~-~~lD~E~~~~~~l~i~a~d~~~----~~~~~~v~i~V~d~nd~~P~f~~~~   75 (212)
                      +|+|+|.++.   .+|.|++.+|.|+++ ++||||....|.|.|.|.|.|+    ++..+.|+|.|.|+|||+|.|....
T Consensus       143 ~i~Y~i~~~~---~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~  219 (322)
T 2a62_A          143 KLVYSILEGQ---PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL  219 (322)
T ss_dssp             CEEEEEEECT---TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSE
T ss_pred             EEEEEEccCC---CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCC
Confidence            4899998775   689999999999998 8999999999999999999873    6789999999999999999999999


Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEe----CCccEEEEeeecCCC--CCCeEEEEEEEE
Q psy11061         76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID----RSSGELFVTRGNFLS--RSNSYHINVSAM  149 (212)
Q Consensus        76 ~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id----~~~G~i~~~~~~~ld--~~~~~~l~v~a~  149 (212)
                      |.+.|+|+.+.|+.++++.|+|+|.+.|+.+.|+|..++..++|.|+    ..+|.|++.++  ||  ....|.|.|.|+
T Consensus       220 y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~--LD~E~~~~y~l~V~A~  297 (322)
T 2a62_A          220 YHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKP--LDFETKKSYTLKVEAA  297 (322)
T ss_dssp             EEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBCSC--CCCSSCCEEEEEEEEE
T ss_pred             ceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEECCc--CCcccCCeEEEEEEEE
Confidence            99999999999999999999999999999999999988777899998    46899999999  88  789999999999


Q ss_pred             ECCCCC-------eeeeEEEEEEEe
Q psy11061        150 DGGGNK-------CSQDAQVNINII  167 (212)
Q Consensus       150 D~~~~~-------~~~~~~v~I~v~  167 (212)
                      |.+.|+       .+++++|.|+|.
T Consensus       298 D~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          298 NIHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             CCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             ECCCCCccccCCCcccEEEEEEEEC
Confidence            988664       246788888873

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=5.1e-29  Score=193.34  Aligned_cols=164  Identities=20%  Similarity=0.295  Sum_probs=138.5

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEEC---CcCCcCCCCeEEE---EEEEEeCC-CCceEEEEEEEEeecCCCCCccCC
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIA---QDLDFESRSSYEF---PVVATDRG-GLSTTAMVRIQITDVNDNEPIFNP   73 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~---~~lD~E~~~~~~l---~i~a~d~~-~~~~~~~v~i~V~d~nd~~P~f~~   73 (212)
                      .|+|+|.+..  ..+|.|++.+|.+.+.   +.||||....|.+   .+.+.+++ +....+.|+|.|.|+|||+|.|.+
T Consensus        52 ~i~ysl~~~~--~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~  129 (242)
T 4apx_B           52 TIELSLKDNV--DYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKH  129 (242)
T ss_dssp             SEEEEEESCG--GGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEEETTTCCEEEEEEEEEEECCCCCCCEESS
T ss_pred             EEEEEEecCC--CceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeECCCCCeEEEEEEEEEEEeCCCCCCcccc
Confidence            4789997654  5799999999999875   6799999766554   44555554 345678899999999999999999


Q ss_pred             CceEEEEecCCCCCcEEEE-----EEEEeCCCCCCceEEEEEEcCCCC----CcEEEeC-CccEEEEeeecCCC--CCCe
Q psy11061         74 VEYNVSLRDDIQTTTAFAV-----VLATDRDSDRFGTISYKIVTGKDA----NLFRIDR-SSGELFVTRGNFLS--RSNS  141 (212)
Q Consensus        74 ~~~~~~v~e~~~~g~~v~~-----~~a~D~D~~~~~~i~y~i~~~~~~----~~F~id~-~~G~i~~~~~~~ld--~~~~  141 (212)
                      ..|.+.|+|+.++|+.|++     +.|+|+|.+.|+.++|+|..+...    +.|.|+. .+|.|++.+.  ||  ....
T Consensus       130 ~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~--LD~E~~~~  207 (242)
T 4apx_B          130 ESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKR--LNYEDKTR  207 (242)
T ss_dssp             SCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSC--CCTTTCCE
T ss_pred             eeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCc--CChhhCCE
Confidence            9999999999999999976     779999999999999999877543    4799985 5899999999  88  7889


Q ss_pred             EEEEEEEEECCCCC---eeeeEEEEEEEee
Q psy11061        142 YHINVSAMDGGGNK---CSQDAQVNINIIN  168 (212)
Q Consensus       142 ~~l~v~a~D~~~~~---~~~~~~v~I~v~d  168 (212)
                      |.|.|.|+|+|+++   +++.+.|+|+|+-
T Consensus       208 y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          208 YYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             EEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCcCchhcccCCceEEEEEee
Confidence            99999999999874   6677888888874

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.96  E-value=1.1e-28  Score=188.08  Aligned_cols=138  Identities=18%  Similarity=0.360  Sum_probs=125.2

Q ss_pred             CCCCccCCCceE--EEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCe
Q psy11061         66 DNEPIFNPVEYN--VSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNS  141 (212)
Q Consensus        66 d~~P~f~~~~~~--~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~  141 (212)
                      +++|.|....|.  +.|+|+.++|+.++++.|+|+|.   +.+.|++..++..++|.|++.+|.|++.+.  ||  ....
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~--LD~E~~~~   77 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEASRFFAVEPDTGVVWLRQP--LDRETKSE   77 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEESHHHHHHEEECTTTCEEEESSC--CCTTTCCE
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeCCCCCCcEEEeCCCCEEEECCc--cCCcccce
Confidence            459999999887  79999999999999999999995   358999987655679999999999999999  88  7889


Q ss_pred             EEEEEEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCCCCeec
Q psy11061        142 YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF  211 (212)
Q Consensus       142 ~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  211 (212)
                      |.|.|.|+|.++.   .++.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.++++
T Consensus        78 y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v  144 (210)
T 3mvs_A           78 FTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSV  144 (210)
T ss_dssp             EEEEEEEECSSCE---EEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCE
T ss_pred             EEEEEEEEeCCCC---EEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceE
Confidence            9999999998743   578999999999999999999999999999999999999999999999987753

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.96  E-value=5.5e-29  Score=173.29  Aligned_cols=114  Identities=27%  Similarity=0.358  Sum_probs=106.4

Q ss_pred             EEEeecCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCC--CCcEEEeCCccEEEEeeecCC
Q psy11061         59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKD--ANLFRIDRSSGELFVTRGNFL  136 (212)
Q Consensus        59 i~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~--~~~F~id~~~G~i~~~~~~~l  136 (212)
                      +.|.|+|||+|.|.+..|.+.|.|+.++|+.++++.|+|+|.+.|++++|+|..+..  .++|.|++.+|.|++.+.  |
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~--L   79 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHR--I   79 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSC--C
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECcc--C
Confidence            468999999999999999999999999999999999999999999999999987543  368999999999999999  8


Q ss_pred             C--CCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCCCCCC
Q psy11061        137 S--RSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIP  174 (212)
Q Consensus       137 d--~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P  174 (212)
                      |  ....|.|.|.|+|.+.++++++++|+|+|.|+|||+|
T Consensus        80 D~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           80 DREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             CTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             CcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            8  7899999999999999888899999999999999998

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.94  E-value=1.4e-26  Score=176.99  Aligned_cols=132  Identities=22%  Similarity=0.306  Sum_probs=120.6

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCC----CCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEE
Q psy11061         77 NVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK----DANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMD  150 (212)
Q Consensus        77 ~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D  150 (212)
                      .+.|+|+.+ |+.++.+.+.|.|.+.++.+.|+|..+.    ..++|.|++.+|.|++.+.  ||  ....|.|.|.|+|
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~a~D   82 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRAHAVD   82 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEE
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcc--cCcccCCeEEEEEEEEE
Confidence            678999998 8888889999999888999999998753    3579999999999999999  88  7889999999999


Q ss_pred             CCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCC--CCCeec
Q psy11061        151 GGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS--GKFTEF  211 (212)
Q Consensus       151 ~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~--~~~~~~  211 (212)
                      .+++++++++.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.  |.++++
T Consensus        83 ~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i  145 (215)
T 2qvi_A           83 INGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML  145 (215)
T ss_dssp             TTTCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCC
T ss_pred             CCCCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEE
Confidence            9998888899999999999999999999999999999999999999999999998  677654

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.94  E-value=3.3e-26  Score=174.84  Aligned_cols=132  Identities=20%  Similarity=0.276  Sum_probs=117.6

Q ss_pred             ceEEEEecCC--CCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEE
Q psy11061         75 EYNVSLRDDI--QTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMD  150 (212)
Q Consensus        75 ~~~~~v~e~~--~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D  150 (212)
                      .+.+.|.|+.  +.|+.++.+ |+|+|.+ ++.+.|+|..++..++|.|++.+|.|++.+.  ||  ....|.|.|.|+|
T Consensus         5 ~~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~a~D   80 (215)
T 2a4e_A            5 WNQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKT--LDREERAQYTLMAQAVD   80 (215)
T ss_dssp             CCEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEE
T ss_pred             EeeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCc--cCCccCCEEEEEEEEEE
Confidence            3678999995  468888887 7999998 6789999987655679999999999999999  88  7889999999999


Q ss_pred             CCC-CCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCC---CCCee
Q psy11061        151 GGG-NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS---GKFTE  210 (212)
Q Consensus       151 ~~~-~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~---~~~~~  210 (212)
                      .++ ++.+..+.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.   |.+++
T Consensus        81 ~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~  144 (215)
T 2a4e_A           81 RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAK  144 (215)
T ss_dssp             TTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSC
T ss_pred             CCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceE
Confidence            875 5667889999999999999999999999999999999999999999999997   77654

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.94  E-value=7e-26  Score=173.00  Aligned_cols=130  Identities=19%  Similarity=0.270  Sum_probs=117.0

Q ss_pred             eEEEEecCCC--CCcEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEE
Q psy11061         76 YNVSLRDDIQ--TTTAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVS  147 (212)
Q Consensus        76 ~~~~v~e~~~--~g~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~  147 (212)
                      ..+.|+|+.+  .++.++++.| |.|.  ++.+.|+|..+    ++.++|.|++.+|.|++.++  ||  ....|.|.|.
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~   79 (213)
T 3qrb_A            5 AAISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP--LDREAIAKYILYSH   79 (213)
T ss_dssp             EEEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCSEEEEEEE
T ss_pred             CCEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCc--cCcccCceEEEEEE
Confidence            3788999998  5788999998 7765  77899999874    33469999999999999999  88  7889999999


Q ss_pred             EEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCCC---CCee
Q psy11061        148 AMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG---KFTE  210 (212)
Q Consensus       148 a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~---~~~~  210 (212)
                      |+|.++++.+.++.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.|   .+++
T Consensus        80 a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~  145 (213)
T 3qrb_A           80 AVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA  145 (213)
T ss_dssp             EEETTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTC
T ss_pred             EEeCCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcE
Confidence            99999888888999999999999999999999999999999999999999999999998   5554

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.93  E-value=2.4e-25  Score=168.74  Aligned_cols=129  Identities=16%  Similarity=0.301  Sum_probs=116.1

Q ss_pred             eEEEEecCCCCC--cEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEEC
Q psy11061         76 YNVSLRDDIQTT--TAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        76 ~~~~v~e~~~~g--~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      ..+.|.|+.+.|  ..++++. +|+|.+.+   +|+|..++..++|.|++.+|.|++.+.  ||  ....|.|.|.|+|.
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~a~D~   78 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFER--LDREKKAEYELTAHIIDR   78 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSC--CCTTTCCEEEEEEEEEET
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECcc--ccccccceEEEEEEEEEC
Confidence            468899999987  8888888 99998765   999998777789999999999999999  88  88899999999999


Q ss_pred             CCC-CeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCC---CCCee
Q psy11061        152 GGN-KCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS---GKFTE  210 (212)
Q Consensus       152 ~~~-~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~---~~~~~  210 (212)
                      +++ +.++.+.|.|.|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.   |.+++
T Consensus        79 g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~  141 (203)
T 3ppe_A           79 RNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHAT  141 (203)
T ss_dssp             TTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTC
T ss_pred             CCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceE
Confidence            876 466789999999999999999999999999999999999999999999994   66654

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=2.4e-26  Score=158.59  Aligned_cols=108  Identities=25%  Similarity=0.362  Sum_probs=99.1

Q ss_pred             EEEeecCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcC---CCCCcEEEeCCccEEEEeeecC
Q psy11061         59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTG---KDANLFRIDRSSGELFVTRGNF  135 (212)
Q Consensus        59 i~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~---~~~~~F~id~~~G~i~~~~~~~  135 (212)
                      |.|.|+|||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.+.|++++|+|...   +..++|.|++.+|.|++.+.  
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~--   79 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRS--   79 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSC--
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECcc--
Confidence            4689999999999999999999999999999999999999999999999999763   23469999999999999999  


Q ss_pred             CC--CCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCC
Q psy11061        136 LS--RSNSYHINVSAMDGGGNKCSQDAQVNINIINSH  170 (212)
Q Consensus       136 ld--~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~n  170 (212)
                      ||  ....|.|.|.|+|.++++  ++++|+|+|.|+|
T Consensus        80 LD~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           80 LDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             CCTTTCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             CCcccCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            88  789999999999998876  6789999999997

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-27  Score=186.38  Aligned_cols=139  Identities=16%  Similarity=0.138  Sum_probs=118.7

Q ss_pred             ccCCCceEEEEecCCCCCcEEEEEEEEeCCCCC--CceEE------EEEEcCCCCCcEEEeCCccEEEEeeecCCC--CC
Q psy11061         70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDR--FGTIS------YKIVTGKDANLFRIDRSSGELFVTRGNFLS--RS  139 (212)
Q Consensus        70 ~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~--~~~i~------y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~  139 (212)
                      .|.+..|.+.|+|+.++|+.|+++.|+|+|.+.  +.++.      |++..+ ..++|.|++.+|.|++.+.  ||  ..
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~-~~~~F~Id~~tG~i~~~~~--LDrE~~   78 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH-ENNWIRIQEDTGLLYLQRS--LDHSSW   78 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE-ECCSEEECTTTCEEEESSC--BCHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC-CCCEEEECCCcEEEEECCc--CChhHh
Confidence            588899999999999999999999999999854  33444      555433 4579999999999999999  99  66


Q ss_pred             CeE------------EEEEEEEECCCC--CeeeeEEEEEEEeeCCCCCCe----------EecCceEEEEeCCCCCCeEE
Q psy11061        140 NSY------------HINVSAMDGGGN--KCSQDAQVNINIINSHMPIPL----------FQQSTYSFVVPEDVFKNSIV  195 (212)
Q Consensus       140 ~~~------------~l~v~a~D~~~~--~~~~~~~v~I~v~d~nd~~P~----------f~~~~~~~~v~e~~~~g~~v  195 (212)
                      ..|            .|.|.|+|.+.+  .++++++|.|+|.|+|||+|+          |.+..|.+.|+|+.++|+.|
T Consensus        79 ~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v  158 (246)
T 2x2u_A           79 EKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH  158 (246)
T ss_dssp             HHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEE
T ss_pred             hhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEE
Confidence            778            999999999877  567889999999999999999          99999999999999999999


Q ss_pred             EEEEEEeCCCCCCeec
Q psy11061        196 GTIKAATSDSGKFTEF  211 (212)
Q Consensus       196 ~~v~a~D~D~~~~~~~  211 (212)
                      ++|.|+|+|.|.++++
T Consensus       159 ~~v~A~D~D~g~n~~i  174 (246)
T 2x2u_A          159 QFRLLPVQFLCPQISV  174 (246)
T ss_dssp             ECSCHHHHHHCTTSCE
T ss_pred             EEEEEEcCCCCCCcEE
Confidence            9999999999998764

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.93  E-value=2.1e-25  Score=170.93  Aligned_cols=128  Identities=19%  Similarity=0.313  Sum_probs=116.1

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEE
Q psy11061         77 NVSLRDDIQTT--TAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSA  148 (212)
Q Consensus        77 ~~~v~e~~~~g--~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a  148 (212)
                      .+.|+|+.+.|  ..++++.|.|.|.    .+.|+|..+    ++.++|.|++.+|.|++.+.  ||  ....|.|.|.|
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~a   80 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT--LDRETIATYQLYVET   80 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCSEEEEEEEE
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCc--CCcccCCEEEEEEEE
Confidence            68899999988  8889999988775    599999753    34589999999999999999  88  78899999999


Q ss_pred             EECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCC--CCCee
Q psy11061        149 MDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS--GKFTE  210 (212)
Q Consensus       149 ~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~--~~~~~  210 (212)
                      +|.+++++++++.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.  |.+++
T Consensus        81 ~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~  144 (218)
T 3k5r_A           81 TDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNAL  144 (218)
T ss_dssp             ECSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGC
T ss_pred             EECCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcE
Confidence            999988888999999999999999999999999999999999999999999999999  56654

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.93  E-value=4.7e-26  Score=173.21  Aligned_cols=130  Identities=20%  Similarity=0.364  Sum_probs=111.4

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEECC
Q psy11061         77 NVSLRDDIQTT--TAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDGG  152 (212)
Q Consensus        77 ~~~v~e~~~~g--~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~~  152 (212)
                      .+.|.|+.+.+  ..++.+ |+|+|.+ ++.+.|+|..++..++|.|++.+|.|++.+.  ||  ....|.|.|.|+|.+
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~a~D~~   81 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKR--LDREEKPVYILRAQAVNRR   81 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSC--CCGGGCCEEEC----CBSS
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCC--cCcccCCEEEEEEEEEECC
Confidence            46789998855  577777 8999998 5779999987666679999999999999999  88  788999999999987


Q ss_pred             -CCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEEEEeCCC---CCCee
Q psy11061        153 -GNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDS---GKFTE  210 (212)
Q Consensus       153 -~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~---~~~~~  210 (212)
                       +++.++++.|.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.   |.+++
T Consensus        82 ~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~  143 (207)
T 3lnd_A           82 TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK  143 (207)
T ss_dssp             SCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTC
T ss_pred             CCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcE
Confidence             46667888999999999999999999999999999999999999999999998   76654

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=1e-23  Score=147.22  Aligned_cols=112  Identities=20%  Similarity=0.313  Sum_probs=102.7

Q ss_pred             cCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--
Q psy11061         64 VNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--  137 (212)
Q Consensus        64 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--  137 (212)
                      .+.++|.|....|.+.+.|+.++|+.|+++. +|.|.+.|+.++|+|..+    +..++|.|++.+|.|++.+.  ||  
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE   81 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI--LDRE   81 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSC--CBTT
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcc--cCcc
Confidence            4688999999999999999999999999999 699998888999999875    24579999999999999999  88  


Q ss_pred             CCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCCCCCCeEec
Q psy11061        138 RSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQ  178 (212)
Q Consensus       138 ~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~  178 (212)
                      ....|.|.|.|+|.+++++++++.|.|+|.|+|||+|.|.+
T Consensus        82 ~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           82 ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             TBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             cCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            78999999999999998888999999999999999999975

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.83  E-value=3e-20  Score=144.03  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=106.4

Q ss_pred             CceEEEEecCCCCCcEEEEEEEEe-CCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeee-cCCC--CCCeE---EEEE
Q psy11061         74 VEYNVSLRDDIQTTTAFAVVLATD-RDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRG-NFLS--RSNSY---HINV  146 (212)
Q Consensus        74 ~~~~~~v~e~~~~g~~v~~~~a~D-~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~-~~ld--~~~~~---~l~v  146 (212)
                      +.+.+.|.|+.+.|+.+..+.+.+ .|.++++.+.|+|.. +...+|.|++.+|.+.+... ..||  ....|   .+.+
T Consensus        20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~-~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v   98 (242)
T 4apx_B           20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD-NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQV   98 (242)
T ss_dssp             SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES-CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEE
T ss_pred             CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec-CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEE
Confidence            347889999999999987655554 445678889999974 44578999999999987532 2266  33344   4555


Q ss_pred             EEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEE-----EEEEeCCCCCCeec
Q psy11061        147 SAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGT-----IKAATSDSGKFTEF  211 (212)
Q Consensus       147 ~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~-----v~a~D~D~~~~~~~  211 (212)
                      .+.+.. ......+.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|++     +.|+|+|.|.|+++
T Consensus        99 ~~~~~~-~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v  167 (242)
T 4apx_B           99 QCVNKK-VGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQI  167 (242)
T ss_dssp             EEEETT-TCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCE
T ss_pred             EeECCC-CCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCce
Confidence            555543 23445678999999999999999999999999999999999976     78999999998754

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.83  E-value=1.7e-20  Score=128.28  Aligned_cols=97  Identities=22%  Similarity=0.347  Sum_probs=77.1

Q ss_pred             ceEEEEecCCCCCcE--EEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEE
Q psy11061         75 EYNVSLRDDIQTTTA--FAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINV  146 (212)
Q Consensus        75 ~~~~~v~e~~~~g~~--v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v  146 (212)
                      .|.+.|+|+.++|+.  ++++   |.|.+.|+.++|+|..+    +..++|.|++.+|.|++.++  ||  ....|.|.|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~V   80 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRA   80 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCCEEEEEE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCc--CCcccCCeEEEEE
Confidence            368899999999985  5554   67777889999999864    34679999999999999999  88  788999999


Q ss_pred             EEEECCCCCeeeeEEEEEEEeeCCCCCCeE
Q psy11061        147 SAMDGGGNKCSQDAQVNINIINSHMPIPLF  176 (212)
Q Consensus       147 ~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f  176 (212)
                      .|+|.+++++++++.|.|+|.|+|||+|.|
T Consensus        81 ~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           81 HAVDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEECTTSCBCSCCEEEEEEEC---------
T ss_pred             EEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            999999888888999999999999999998

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=6.6e-20  Score=128.02  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=88.4

Q ss_pred             CceEEEEecCCCCCcEEEEEEEEeCCCCCCceE---EEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CC----CeEEE
Q psy11061         74 VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTI---SYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RS----NSYHI  144 (212)
Q Consensus        74 ~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i---~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~----~~~~l  144 (212)
                      ..+.+.|+|+.++|+.|+++ |.|.|.+. +.+   .|+|..++..++|.||+.+|.|++.+.  ||  ..    ..|.|
T Consensus        11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~--LDRE~~c~~~~~y~l   86 (125)
T 1wyj_A           11 ATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEK--LDREELCGSTNPCIL   86 (125)
T ss_dssp             CCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSC--CCSTTTCTTCSSCCB
T ss_pred             ceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECcc--ccchhhcccCCcEEE
Confidence            45778999999999999999 88888763 334   899998777789999999999999999  88  55    78999


Q ss_pred             EEEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCceEEE
Q psy11061        145 NVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFV  184 (212)
Q Consensus       145 ~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~  184 (212)
                      .|.|.+.. +.  ..++|.|+|.|+|||+|.|.+..|.++
T Consensus        87 ~v~a~~~~-p~--~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           87 HFQVLLKS-PV--QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CCEEEETT-TT--EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEECC-CC--eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            99999843 33  478999999999999999999887654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.73  E-value=3e-17  Score=109.80  Aligned_cols=89  Identities=18%  Similarity=0.334  Sum_probs=80.2

Q ss_pred             eEEEEecCCC--CCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEEC
Q psy11061         76 YNVSLRDDIQ--TTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        76 ~~~~v~e~~~--~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      ..+.|+|+.+  .|+.++++. +|+|.+ |+++.|+|..+...+.|.|++.+|.|++.++  ||  ....|.|+|.|+|+
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~V~A~D~   81 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQR--LDREERSQYTLRAQALDR   81 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEET
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECee--cCCccCCeEEEEEEEEEC
Confidence            5688999976  579999999 999999 9999999987666678999999999999999  88  88999999999999


Q ss_pred             C-CCCeeeeEEEEEEEee
Q psy11061        152 G-GNKCSQDAQVNINIIN  168 (212)
Q Consensus       152 ~-~~~~~~~~~v~I~v~d  168 (212)
                      + ++++++.+.|.|+|.|
T Consensus        82 G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           82 RTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             TTCCBSSCCEEEEEEEEC
T ss_pred             CCCCCcceeEEEEEEEeC
Confidence            8 5888889999999986

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.72  E-value=4.1e-17  Score=108.97  Aligned_cols=89  Identities=15%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             eEEEEecCCC--CCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEEC
Q psy11061         76 YNVSLRDDIQ--TTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        76 ~~~~v~e~~~--~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      +.+.|+|+.+  .|+.++++. +|+|.+ |++++|+|..+...+.|.||+.+|.|++.++  ||  ....|.|.|.|+|+
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~A~D~   80 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKR--LDREEKAEYTLTAQAVDF   80 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEET
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECcc--CCCcCCCeEEEEEEEEEC
Confidence            5788999985  789999997 999999 9999999987655568999999999999999  88  88999999999999


Q ss_pred             CC-CCeeeeEEEEEEEee
Q psy11061        152 GG-NKCSQDAQVNINIIN  168 (212)
Q Consensus       152 ~~-~~~~~~~~v~I~v~d  168 (212)
                      +. ++.++.+.|.|.|.|
T Consensus        81 g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           81 ETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             TTCCBSSCCEEEEEEECC
T ss_pred             CCCCCcceeEEEEEEEEC
Confidence            86 677888999999976

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.72  E-value=1.6e-17  Score=113.49  Aligned_cols=71  Identities=25%  Similarity=0.469  Sum_probs=55.2

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCcc
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIF   71 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f   71 (212)
                      +|+|+|..+.   ...++|.|++.+|.|+++++||||....|.|.|.|.|.|+  +++++.+.|.|.|+|||+|.|
T Consensus        35 ~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           35 SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             CCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBCSCCEEEEEEEC---------
T ss_pred             EEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            5899997531   3468999999999999999999999999999999999884  678899999999999999998

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=115.25  Aligned_cols=73  Identities=26%  Similarity=0.423  Sum_probs=65.2

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCCccCC
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP   73 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P~f~~   73 (212)
                      +|+|+|..+.   ...++|.|++.+|.|+++++||||....|.|.|.|.|.|+  +++++.+.|.|.|+|||+|.|.+
T Consensus        45 ~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           45 KITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             CCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             eEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            4899997642   2457999999999999999999999999999999999885  67889999999999999999975

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.68  E-value=2.1e-16  Score=105.79  Aligned_cols=87  Identities=23%  Similarity=0.395  Sum_probs=78.4

Q ss_pred             eEEEEecCCCC--CcEEEEEEEEeCCCCCCceEEEEEEc----CCCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEE
Q psy11061         76 YNVSLRDDIQT--TTAFAVVLATDRDSDRFGTISYKIVT----GKDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVS  147 (212)
Q Consensus        76 ~~~~v~e~~~~--g~~v~~~~a~D~D~~~~~~i~y~i~~----~~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~  147 (212)
                      ..+.|+|+.++  |+.++++.|+|+|.    .++|+|..    ++..+.|.|++.+|.|++.++  ||  ....|.|.|.
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~V~   78 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA--LDREAIPSYQLQVE   78 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCCEEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcC--CCcccCceEEEEEE
Confidence            46789999999  99999999999997    59999975    344579999999999999999  88  8899999999


Q ss_pred             EEECCCCCeeeeEEEEEEEee
Q psy11061        148 AMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       148 a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      |+|+++++.++.+.|.|+|.|
T Consensus        79 A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           79 TTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             EECTTCCEEEEEEEEEEEEEC
T ss_pred             EEECCCCceeeEEEEEEEEEC
Confidence            999999988889999999986

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.67  E-value=1.1e-15  Score=102.32  Aligned_cols=86  Identities=19%  Similarity=0.392  Sum_probs=77.2

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEE
Q psy11061         77 NVSLRDDIQTT--TAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSA  148 (212)
Q Consensus        77 ~~~v~e~~~~g--~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a  148 (212)
                      .+.|+||.+.|  +.++++.|+|+|.    .++|+|...    +..+.|.||+.+|.|++.++  ||  ....|.|.|.|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~v~A   79 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRP--LDREAIANYELEVEV   79 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCCEEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcc--cCCccCCEEEEEEEE
Confidence            46899999986  8899999999997    599999753    34579999999999999999  88  88999999999


Q ss_pred             EECCCCCeeeeEEEEEEEee
Q psy11061        149 MDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       149 ~D~~~~~~~~~~~v~I~v~d  168 (212)
                      +|+++++.++.++|.|+|.|
T Consensus        80 ~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           80 TDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             EETTSCEEEEEEEEEEEEEC
T ss_pred             EECCCCceeeeEEEEEEEEC
Confidence            99999998999999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.67  E-value=7.2e-16  Score=103.38  Aligned_cols=86  Identities=19%  Similarity=0.390  Sum_probs=77.3

Q ss_pred             EEEEecCCCC--CcEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEE
Q psy11061         77 NVSLRDDIQT--TTAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSA  148 (212)
Q Consensus        77 ~~~v~e~~~~--g~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a  148 (212)
                      .+.|+||.+.  |+.++++.|+|+|.    .++|+|...    ++.+.|.||+.+|.|++.++  ||  ....|.|.|.|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~V~A   80 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT--LDRETIATYQLYVET   80 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCSEEEEEEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcc--cCCcCCCEEEEEEEE
Confidence            5789999998  89999999999997    499999753    34579999999999999999  88  88999999999


Q ss_pred             EECCCCCeeeeEEEEEEEee
Q psy11061        149 MDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       149 ~D~~~~~~~~~~~v~I~v~d  168 (212)
                      +|++++++++.++|.|+|.|
T Consensus        81 ~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           81 TDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             ECTTCCEEEEEEEEEEEEEC
T ss_pred             EECCCCcccceEEEEEEEEC
Confidence            99999998899999999986

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=2.5e-17  Score=114.92  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             EEEEcCCCCCcCceEEeCCceEEEECCcCCcCCC----CeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCccCCCceEE
Q psy11061          3 NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNV   78 (212)
Q Consensus         3 ~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~----~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~f~~~~~~~   78 (212)
                      +|+|.++. ..++|.|++.||.|+++++||||..    ..|.|.++|.+..+. ..+.|.|.|.|+|||+|.|.+..|.+
T Consensus        45 ~Y~i~~~~-~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a~~~~p~-~~~~V~I~V~DvNDN~P~F~~~~y~v  122 (125)
T 1wyj_A           45 GAQILSKG-NKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPV-QFIQGEIQLQDVNDHAPEFMEDESGP  122 (125)
T ss_dssp             TCEEECSS-SSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEEEETTTT-EEECCCEEECCCCCCCCCCCCCCCCC
T ss_pred             EEEEecCC-CCCeEEEECCccEEEECccccchhhcccCCcEEEEEEEEECCCC-eEEEEEEEEEEccCCCCcCCCcEEEE
Confidence            79996654 3579999999999999999999999    999999999986554 57899999999999999999988865


Q ss_pred             E
Q psy11061         79 S   79 (212)
Q Consensus        79 ~   79 (212)
                      .
T Consensus       123 s  123 (125)
T 1wyj_A          123 S  123 (125)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.64  E-value=1.1e-15  Score=103.43  Aligned_cols=88  Identities=22%  Similarity=0.364  Sum_probs=76.4

Q ss_pred             EEEEecCCC--CCcEEEEEEEEeCCCCCCceEEEEEEcCCC----CCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEE
Q psy11061         77 NVSLRDDIQ--TTTAFAVVLATDRDSDRFGTISYKIVTGKD----ANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSA  148 (212)
Q Consensus        77 ~~~v~e~~~--~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~----~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a  148 (212)
                      .+.|+|+.+  .|..++++.| |  .+.|+.++|+|..++.    .++|.||+.+|.|++.++  ||  ....|.|+|.|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~--LDrE~~~~y~l~V~A   84 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP--LDRERIATYTLFSHA   84 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCCEEEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECcc--CCcCCCCeEEEEEEE
Confidence            467999998  4789999999 3  3568899999987643    468999999999999999  88  88999999999


Q ss_pred             EECCCCCeeeeEEEEEEEeeC
Q psy11061        149 MDGGGNKCSQDAQVNINIINS  169 (212)
Q Consensus       149 ~D~~~~~~~~~~~v~I~v~d~  169 (212)
                      +|.++++.++++.|.|+|.|+
T Consensus        85 ~D~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           85 VSSNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             ECTTSCBSSCCEEEEEEEEC-
T ss_pred             EECCCCceeeEEEEEEEEEeC
Confidence            999999888899999999985

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=7.2e-16  Score=106.75  Aligned_cols=69  Identities=29%  Similarity=0.479  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCC-CcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeecCCCCC
Q psy11061          1 MVNYTLGESPS-RTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEP   69 (212)
Q Consensus         1 ~i~Y~i~~~~~-~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~nd~~P   69 (212)
                      +|+|+|..+.. ...+|.|++.+|.|+++++||||....|.|.|.|+|.|+  +++++.++|.|.|+|||+|
T Consensus        48 ~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           48 QIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             CCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             eEEEEEecCCCccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            47899977642 246999999999999999999999999999999999885  6789999999999999998

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.49  E-value=1.6e-13  Score=91.42  Aligned_cols=62  Identities=23%  Similarity=0.390  Sum_probs=55.0

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC---CceEEEEEEEEee
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~---~~~~~~v~i~V~d   63 (212)
                      +|+|+|..+. ..++|.|++.+|.|+++++||||....|.|.|.|+|.|+   +++++.+.|.|.|
T Consensus        34 ~v~Ysi~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           34 KIKYILSGDG-AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             CEEEEEEETT-BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEECC
T ss_pred             EEEEEEeCCC-CCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCCCCCcceeEEEEEEEEC
Confidence            5899996643 346899999999999999999999999999999999974   6888999999876

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.48  E-value=1.6e-13  Score=92.62  Aligned_cols=64  Identities=20%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEeec
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV   64 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~   64 (212)
                      +|+|+|..+.   .+.++|.|++.+|.|+++++||||....|.|.|+|.|.|+  +++++.|+|.|.|+
T Consensus        37 ~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           37 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             CCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBSSCCEEEEEEEEC-
T ss_pred             eEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCCCceeeEEEEEEEEEeC
Confidence            5899996643   1246899999999999999999999999999999999985  67889999999985

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.47  E-value=2.8e-13  Score=90.37  Aligned_cols=62  Identities=31%  Similarity=0.443  Sum_probs=54.9

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCC-C--CceEEEEEEEEee
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG-G--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~-~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|..+. ..++|.|++.+|.|++.++||||....|.|+|.|+|.| +  +++.+.+.|.|.|
T Consensus        35 ~v~Ysi~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           35 SIKYILSGEG-AGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             CEEEEEEETT-BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEEEC
T ss_pred             EEEEEEeCCC-CCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCCCCcceeEEEEEEEeC
Confidence            5899996654 34789999999999999999999999999999999997 3  6788999999986

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=94.07  Aligned_cols=65  Identities=28%  Similarity=0.442  Sum_probs=58.1

Q ss_pred             CeEEEEcCCC--CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecC
Q psy11061          1 MVNYTLGESP--SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVN   65 (212)
Q Consensus         1 ~i~Y~i~~~~--~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~n   65 (212)
                      +|+|+|....  ....+|.|++.+|.|+++++||||....|.|.|.|+|.|+..+++.++|.|.|+|
T Consensus        48 ~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           48 EIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN  114 (114)
T ss_dssp             CCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSSSCEEEEEEEEEECCC
T ss_pred             EEEEEEccCCCCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCCCceEEEEEEEEEECC
Confidence            5899997632  2357999999999999999999999999999999999987778999999999998

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.44  E-value=7.5e-13  Score=88.40  Aligned_cols=63  Identities=24%  Similarity=0.440  Sum_probs=54.7

Q ss_pred             CeEEEEcCC-C--CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGES-P--SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~-~--~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|... .  .+.+.|.|++.+|.|+++++||||....|.|.|+|+|.|+  +++++.+.|.|.|
T Consensus        32 ~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           32 GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTSCEEEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCCCceeeeEEEEEEEEC
Confidence            589999652 1  3458999999999999999999999999999999999986  5678899998876

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.44  E-value=6.4e-13  Score=88.71  Aligned_cols=63  Identities=25%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             CeEEEEcCC---CCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGES---PSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~---~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|...   ..+.+.|.|++.+|.|+++++||||....|.|.|.|.|.|+  +++.+.++|.|.|
T Consensus        32 ~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           32 GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECCCCceeeEEEEEEEEEC
Confidence            589999642   13468999999999999999999999999999999999886  5677889888876

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.42  E-value=7.6e-13  Score=88.53  Aligned_cols=63  Identities=21%  Similarity=0.377  Sum_probs=54.4

Q ss_pred             CeEEEEcCC-C--CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGES-P--SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~-~--~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|... .  .+.+.|.|++.+|.|++.++||||....|.|.|+|+|.|+  +++++.+.|.|.|
T Consensus        33 ~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           33 GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCCCcccceEEEEEEEEC
Confidence            479999542 1  3457999999999999999999999999999999999986  5678899998876

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.42  E-value=5e-14  Score=94.83  Aligned_cols=93  Identities=14%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             CceEEEEecCCCCCcEEEEEEEEeCCCCCC--ceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC--C----CCeEEEE
Q psy11061         74 VEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS--R----SNSYHIN  145 (212)
Q Consensus        74 ~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~--~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld--~----~~~~~l~  145 (212)
                      ..+.+.|+|+.+.|+.|+++ |.|.|...+  +.+.|+|..++..++|.|++.+|.|++.+.  ||  .    ...|.+.
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~--LDRE~~~~~~~~~~~~   79 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSR--IDREELCGRSAECSIH   79 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSC--CSHHHHCSSSSSCEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCc--CccccccCCCCcEEEE
Confidence            45788999999999999999 999886422  357899988777789999999999999998  98  2    1334455


Q ss_pred             EEEEECCCCCeeeeEEEEEEEeeCCCC
Q psy11061        146 VSAMDGGGNKCSQDAQVNINIINSHMP  172 (212)
Q Consensus       146 v~a~D~~~~~~~~~~~v~I~v~d~nd~  172 (212)
                      +.|... .|.  ..+.|.|+|.|+|||
T Consensus        80 ~~v~~~-~p~--~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           80 LEVIVD-RPL--QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEEEET-TTT--EEEEEEEEEECCSCC
T ss_pred             EEEEEC-CCC--EEEEEEEEEEEcCCC
Confidence            555443 333  378999999999997

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.17  E-value=2.3e-11  Score=81.71  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             eEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCC----CeEEEEEEEEeCCCCceEEEEEEEEeecCCC
Q psy11061          2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRGGLSTTAMVRIQITDVNDN   67 (212)
Q Consensus         2 i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~----~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~   67 (212)
                      ++|+|.++. ...+|.|++.||.|+++++||||..    ..|.+.++|....++ ..+.+.|.|.|+|||
T Consensus        36 ~~y~i~~~~-~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~~~p~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           36 RLFRVASKD-RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPL-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             TTBCCBCSS-CSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEETTTT-EEEEEEEEEECCSCC
T ss_pred             EEEEEEeCC-CccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEECCCC-EEEEEEEEEEEcCCC
Confidence            578986654 4689999999999999999999985    234444444443344 478999999999997

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=93.76  E-value=1.4  Score=32.07  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEEEeCCCCceE-EEEEEEEeecCCCCCccCCCceEEEEecCCC---CC-cEEEEEEEEeCCCCCCceEEEE
Q psy11061         35 SRSSYEFPVVATDRGGLSTT-AMVRIQITDVNDNEPIFNPVEYNVSLRDDIQ---TT-TAFAVVLATDRDSDRFGTISYK  109 (212)
Q Consensus        35 ~~~~~~l~i~a~d~~~~~~~-~~v~i~V~d~nd~~P~f~~~~~~~~v~e~~~---~g-~~v~~~~a~D~D~~~~~~i~y~  109 (212)
                      ....|.|+++|.|..|.... ..+.|.|.+  ..+|..     .+.-+.+..   .| ..-+...|.|.+.. -.++.|.
T Consensus        59 ~~G~htlta~A~D~aGn~s~s~~v~vtV~~--~~~Ptv-----~itsP~~g~~~~~~~~vtl~~~AsD~~g~-V~~Ve~~  130 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGRRIESPVTPVLVKV--IVKPTV-----KLTAPKSNVVAYGNEFLKITATASDSDGK-ISRVDFL  130 (190)
T ss_dssp             CSEEEEEEEEEEETTSCEEECCCEEEEEEC--CCCCEE-----EEEECCTTCCCBTTSEEEEEEEEECSSSC-EEEEEEE
T ss_pred             CCccEEEEEEEEECCCCEeeecceeEEecc--CCCCce-----eecCCCCCcEEecCCeEEEEEEEECCCCc-EEEEEEE
Confidence            35689999999999876543 457777776  446754     233333322   23 44466777775521 2245555


Q ss_pred             EEcCCCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEee
Q psy11061        110 IVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       110 i~~~~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      +. |   ....-+. ++.......  . ..+.|.|+++|+|..|... ....|.|+|.+
T Consensus       131 ~d-g---~~v~t~t-~~~y~~~~~--~-~~G~~tl~a~A~D~aGn~s-~s~~vtvtv~~  180 (190)
T 3pdd_A          131 VD-G---EVIGSDR-EAPYEYEWK--A-VEGNHEISVIAYDDDDAAS-TPDSVKIFVKQ  180 (190)
T ss_dssp             ET-T---EEEEEEC-SSSEEEEEE--C-CSEEEEEEEEEEETTCCBC-CCEEEEEEEBC
T ss_pred             EC-C---EEEeccc-CCCEEEEEe--c-CCeeEEEEEEEEECCCCEE-ecceEEEEECC
Confidence            42 1   1222221 122222222  1 5789999999999987753 35667777765

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=92.42  E-value=1.6  Score=30.89  Aligned_cols=81  Identities=15%  Similarity=0.245  Sum_probs=60.3

Q ss_pred             CCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC-CCCeEEE
Q psy11061         66 DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS-RSNSYHI  144 (212)
Q Consensus        66 d~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld-~~~~~~l  144 (212)
                      ...|-|....|...++-+...|..++++.-.|...  +..+.|...   .+..|.|+. .|.|.+...  +. ....-.|
T Consensus        31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~ss---Dp~dFkV~~-DGtVya~r~--v~L~~~~~~F  102 (159)
T 1op4_A           31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS---EPADFKVDE-DGTVYAVRS--FPLTAEQAKF  102 (159)
T ss_dssp             CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC---CSSEEEEET-TTEEEEESC--CSCSSSCEEE
T ss_pred             cccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEcC---CCCCeEEeC-CCcEEEecc--eeecCCCcEE
Confidence            34688999999777777778899999988877753  445777653   223799984 699999888  66 5555688


Q ss_pred             EEEEEECCCC
Q psy11061        145 NVSAMDGGGN  154 (212)
Q Consensus       145 ~v~a~D~~~~  154 (212)
                      .|.|.|....
T Consensus       103 ~V~a~D~~t~  112 (159)
T 1op4_A          103 LIYAQDKETQ  112 (159)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEEcCCCc
Confidence            9999996543

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=92.06  E-value=0.37  Score=31.55  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             eEEeCCceE----EEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCc
Q psy11061         16 FYMKSVSGE----ICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPI   70 (212)
Q Consensus        16 F~id~~tg~----i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~   70 (212)
                      =..|...|.    |.+...+|......|.++..+.|..|...++..+|.|.+..+..|.
T Consensus        34 tA~D~~DGDlT~~I~V~g~Vdt~k~G~Y~VtY~VtDs~Gn~~t~trtVtV~~~~e~~~~   92 (103)
T 2kpn_A           34 LAIDKEDGDLTSKIKVDGEVDTTKAGTYVLTYTVTDSKGHEVTAKQTVTVKVREEVKND   92 (103)
T ss_dssp             EEECSSSCBCGGGCEEESCCCSSSCEEEEEEEEEECTTSCEEEEEEEEEEECSSCCCCC
T ss_pred             EEEcCCCCCcceeEEEeCcccCCCceEEEEEEEEEcCCCCEEEEEEEEEEeCCCcccCC
Confidence            355555554    4566778988899999999999999988899999999887655443

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.42  E-value=0.84  Score=29.64  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             eEEEEEEcCCCCCcEEEe-CCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCC
Q psy11061        105 TISYKIVTGKDANLFRID-RSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSH  170 (212)
Q Consensus       105 ~i~y~i~~~~~~~~F~id-~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~n  170 (212)
                      .+.|++..|...  ..+. .....+.....    ..+.|.|++.|+|..+.  +++.++.|+|...+
T Consensus        39 sY~W~~~~Gp~~--~~l~~~~~~~~~~t~~----~~G~y~f~LTVtD~~G~--s~s~~v~VtV~~~~   97 (102)
T 2yrl_A           39 SYLWEKTQGPDG--VQLENANSSVATVTGL----QVGTYVFTLTVKDERNL--QSQSSVNVIVKEES   97 (102)
T ss_dssp             CCCEEEEESCTT--CEEESTTSSEEEEESC----CSSEEEEEEEEEBTTCC--EEEEEEEEEEECCS
T ss_pred             EEEEEECCCCce--eEEccCCCccEEEECC----CCeEEEEEEEEEeCCCC--EEEeEEEEEEcCCC
Confidence            456666665421  2332 22233333332    67899999999998774  46788888888766

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=89.17  E-value=5.1  Score=31.36  Aligned_cols=125  Identities=14%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             cCCCCeEEEEEEEEeCCC-CceEEEEEEEEeecCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEE
Q psy11061         33 FESRSSYEFPVVATDRGG-LSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV  111 (212)
Q Consensus        33 ~E~~~~~~l~i~a~d~~~-~~~~~~v~i~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~  111 (212)
                      +|..+.|.+.+..-..+. +......+|.|.| ||++|.|....-...|.|+.  |...+.+.-...- ...-.+.|...
T Consensus        87 ~E~dEtF~v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~-~g~vtV~~~T~  162 (298)
T 3rb5_A           87 FEEDECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGA-RGTVIVPYWTE  162 (298)
T ss_dssp             CCCCEEEEEEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCC-CSCEEEEEEEE
T ss_pred             ccCcEEEEEEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecC-CCCEEEEEEec
Confidence            344555666554332221 2233345556666 56688876665677888874  5666666655432 22336788876


Q ss_pred             cCCCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEee
Q psy11061        112 TGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       112 ~~~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      .|....--...+.+|.|....     ....-.+.|.+.|..-..  ..-++.|.+.+
T Consensus       163 dGTA~~g~Dy~~~~gtltF~~-----Get~kti~V~IidD~~~E--~dEtF~v~Ls~  212 (298)
T 3rb5_A          163 NDTATESKDYEGARGELVFEN-----NESEKFIDLFILEESSYE--KDVSFKVHIGE  212 (298)
T ss_dssp             EC-----CCSCCCEEEEEECT-----TCCEEEEEEC-----------CEEEEEEECC
T ss_pred             CCccCCCccceecccEEEECC-----CCEEEEEEEEEeCCCccc--CceEEEEEEcC
Confidence            664311000012345555322     234455666666543222  23445555543

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=88.82  E-value=7.2  Score=30.50  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             CCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCC--CcEEEeCCccEEEEeee--------c
Q psy11061         65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA--NLFRIDRSSGELFVTRG--------N  134 (212)
Q Consensus        65 nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~--~~F~id~~~G~i~~~~~--------~  134 (212)
                      +|+++.|....-...|.|+.  |.....+.-.. +......+.|....|...  .-|.  +.+|.|.....        .
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~Get~kti~V~   80 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPGVDEQRFRIE   80 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTTCCEECCEEC
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCCceEEEEEEE
Confidence            45566666666677888874  45545554433 333344688887766421  1111  11233222111        0


Q ss_pred             CCC---CCCeEEEEEEEEECC-CCCeeeeEEEEEEEeeCCCCCCeEecCceEEEEeCCCCCCeEEEEEE
Q psy11061        135 FLS---RSNSYHINVSAMDGG-GNKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIK  199 (212)
Q Consensus       135 ~ld---~~~~~~l~v~a~D~~-~~~~~~~~~v~I~v~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~  199 (212)
                      .++   ..+.-+|.|..++.. +.........+|+|.| ||.+|.|.-..-...|.|+.  |...++|.
T Consensus        81 I~dD~~~E~dEtF~v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~  146 (298)
T 3rb5_A           81 VIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVM  146 (298)
T ss_dssp             BCCCSSCCCCEEEEEEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEE
T ss_pred             EeCCCCccCcEEEEEEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEE
Confidence            012   222334444445432 2222222345566666 46789876554467788874  55544444

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.73  E-value=1.1  Score=28.98  Aligned_cols=32  Identities=16%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             CCCeEEEEEEEEeCCCCceEEEEEEEEeecCC
Q psy11061         35 SRSSYEFPVVATDRGGLSTTAMVRIQITDVND   66 (212)
Q Consensus        35 ~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd   66 (212)
                      ....|.|++.|+|..+.+.+..+.|.|...+.
T Consensus        67 ~~G~y~f~LTVtD~~G~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDERNLQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTTCCEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCCCCEEEeEEEEEEcCCCC
Confidence            46799999999999999999999999997655

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=88.15  E-value=7.8  Score=32.03  Aligned_cols=65  Identities=23%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             eCCCCCCceEEEEE--EcCCC--CCcEEEe-CCccEEEEeeecCCC-CCCeEEEEEEEEECCCCCeeeeEEEEEEE
Q psy11061         97 DRDSDRFGTISYKI--VTGKD--ANLFRID-RSSGELFVTRGNFLS-RSNSYHINVSAMDGGGNKCSQDAQVNINI  166 (212)
Q Consensus        97 D~D~~~~~~i~y~i--~~~~~--~~~F~id-~~~G~i~~~~~~~ld-~~~~~~l~v~a~D~~~~~~~~~~~v~I~v  166 (212)
                      |+|   +..++|+=  ..+..  .....|. .....+....+  -. ....|.|++.|+|.+.|..++...|.|+|
T Consensus       366 DPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P--~~~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          366 DPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIP--SNAGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             CTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECC--TTCTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             CCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeC--CCCCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            666   33355544  33321  1234553 34456666665  33 77899999999999977777777777776

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.38  E-value=2.3  Score=37.42  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             EEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCCC
Q psy11061         92 VVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHM  171 (212)
Q Consensus        92 ~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd  171 (212)
                      .+.|-+--.+...+..|+|. |-...+..+......+..+.   | ..+.|+|.|+|++..+.+....+++.|.|     
T Consensus       677 ~f~~l~y~~~~~~~y~Y~L~-G~d~~W~~~~~~~~~~~ytn---L-~pG~Y~f~V~a~~~~g~w~~~~~~l~I~I-----  746 (758)
T 3ott_A          677 ELSDLPYSLDEKNKFVYRLE-GMDKEWNFLKSNINRITYSN---L-SYGNYQLIISKLERDGQPSNRPHILNIRI-----  746 (758)
T ss_dssp             EEECCCTTCSSCCCEEEEEE-TTCSSCEECCTTCCEEEECS---C-CSEEEEEEEEEBCTTSCBCSSCEEEEEEE-----
T ss_pred             EEEcccCCCCccCeEEEEec-CCCCCccCCCCCcceEEecC---C-CCccEEEEEEEeCCCCCccCccEEEEEEE-----
Confidence            34444443444557888885 33345655532333443222   1 68999999999998877655567888988     


Q ss_pred             CCCeEec
Q psy11061        172 PIPLFQQ  178 (212)
Q Consensus       172 ~~P~f~~  178 (212)
                      .||.++.
T Consensus       747 ~Pp~~~~  753 (758)
T 3ott_A          747 LPPWLEH  753 (758)
T ss_dssp             CCGGGGG
T ss_pred             CCcchhh
Confidence            4676543

>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A

Probab=84.89  E-value=2.3  Score=26.32  Aligned_cols=31  Identities=23%  Similarity=0.438  Sum_probs=26.1

Q ss_pred             CcCCCCeEEEEEEEEeCCCCceEEEEEEEEe
Q psy11061         32 DFESRSSYEFPVVATDRGGLSTTAMVRIQIT   62 (212)
Q Consensus        32 D~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~   62 (212)
                      -|.....|.+++.+.|..|...+..+.|.|.
T Consensus        54 ty~~~G~Y~v~LtVtd~~G~~~t~~~~V~V~   84 (85)
T 2y72_A           54 AYKKAGTYNVTLKVTDDKGATATESFTIEIK   84 (85)
T ss_dssp             ECSSCEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEEEEECCCCEEEEEEEEEEc
Confidence            4556789999999999988888888888875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=84.74  E-value=8.8  Score=33.90  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCeeeeEEEEEEEeeCC
Q psy11061         91 AVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSH  170 (212)
Q Consensus        91 ~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~n  170 (212)
                      +.+.|-+-..+...+..|+|. |-...+-... ....+..+.-    ..+.|+|.|+|++..+.+....+++.|.|    
T Consensus       711 i~fs~l~y~~~~~~~y~YrL~-G~d~~W~~~~-~~~~~~ytnL----~pG~Y~f~V~a~n~~g~w~~~~~~l~i~I----  780 (795)
T 4a2l_A          711 IEFVVSNYISGQHNTFAYKLE-GYDKEWYYLT-DSRTVSYSNL----PQGTYQFLVKAANSDGKWNPIPTALEIIV----  780 (795)
T ss_dssp             EEEEECCTTTTTCCEEEEEEE-TTCSSCEEES-SCCEEEEECC----CSEEEEEEEEEECTTSCBCSSCEEEEEEE----
T ss_pred             EEEEEccCCCccccEEEEEEe-CCCCCccCCC-CcCeEEeccc----CCCeEEEEEEEECCCCccCCCceEEEEEE----
Confidence            444554444455667889985 4344565553 3334433221    68999999999998876544567888888    


Q ss_pred             CCCCeEecC
Q psy11061        171 MPIPLFQQS  179 (212)
Q Consensus       171 d~~P~f~~~  179 (212)
                       .||.+..+
T Consensus       781 -~Ppww~t~  788 (795)
T 4a2l_A          781 -LPIWYKTL  788 (795)
T ss_dssp             -CCCC----
T ss_pred             -ECCcccCc
Confidence             47776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	3e-10
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	7e-05
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	8e-10
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-04
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	6e-08
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	3e-05
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	1e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	1e-04
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-07
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-04
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	4e-07
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	7e-07
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-06
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	0.002
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	6e-06
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	5e-05
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	6e-06
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	0.001

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 3e-10
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 69  PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV----TGKDANLFRIDRS 124
           P+ + V   +S  ++ +       ++    + D+ G + Y I           +F I+R 
Sbjct: 1   PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59

Query: 125 SGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
           +G L VT      R  +Y +   A+   GN      ++ I + 
Sbjct: 60  TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 102

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 7e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + + LD E  ++Y     A    G  +     
Sbjct: 37  VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 96

Query: 57  VRIQITD 63
           + I +TD
Sbjct: 97  ILITVTD 103

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 93  VLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSA 148
           ++    + DRF  + Y I           +FRI+  +G + VTR       + Y ++  A
Sbjct: 21  LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 80

Query: 149 MDGGGNKCSQDAQVNINII 167
           +   G+   +  ++ IN+I
Sbjct: 81  VSENGSPVEEPMEITINVI 99

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 2   VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
           V Y++   G        F ++  +G + + + LD E    Y     A    G  +     
Sbjct: 34  VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 93

Query: 57  VRIQITD 63
           + I + D
Sbjct: 94  ITINVID 100

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 47.3 bits (111), Expect = 6e-08
 Identities = 17/106 (16%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 66  DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSS 125
           +  P F P    V + +D+        ++A D D  +   +SY  +    A    +++ +
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDN 59

Query: 126 GELFVT----RGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
           G +       R +   ++N+Y + +   D G +  +    + ++++
Sbjct: 60  GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 105

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 14  NHFYMKSVSGEICIAQDLDFES----RSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
               +   +G +    +LD ES     ++Y   ++ TD G    + T  + + + DV
Sbjct: 51  RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG----KDAN 117
           NDN P F    +  S+R+ +Q  T    V ATD D +       +SY I+         N
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 118 LFRIDRSSGELFVTRGNF-LSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
           LF I+R +G + +        +   Y + V A D  G   S + +  I I 
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 26  CIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
            I   LD E    Y   V ATD  G  LS      IQITD
Sbjct: 74  LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 85  QTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSRSN 140
                   ++      D+  ++ Y +           +F I+  SG+L VT+        
Sbjct: 15  SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74

Query: 141 SYHINVSAMDGGGNKCSQDAQVNINII 167
            +H+   A+D  GN+      + IN+I
Sbjct: 75  RFHLRAHAVDINGNQVENPIDIVINVI 101

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 7   GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
           G     T  F +  +SG++ + + LD E  + +     A D  G  +     + I + D
Sbjct: 44  GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 4e-07
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG------TISYKIVTGKDANL 118
           NDN P F    +N S+ +  +  T    V A D D            I  +  +    N+
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 119 FRIDRSSGELFVTRGNFLS-RSNSYHINVSAMDGGGN---KCSQDAQVNINI 166
           F I+  +G++          +   Y + + A D  GN     S  A   I +
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 7e-07
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF---GTISYKIVTG----KDAN 117
           NDN P F    +  S+ +     T+   V ATD D D       I+Y IV+        N
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 118 LFRIDRSSGELFVTRGNFLSRSNS-YHINVSAMDGGGNKCSQDAQVNINII 167
           +F ++R +G + V        S   Y + V A D  G   S  A+  I + 
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 111

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 11/133 (8%)

Query: 63  DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID 122
           ++   +  F    Y+  L  D+        V  ++ +  R                    
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE--------PADF 56

Query: 123 RSSGELFVTRGNFLSRSNS-YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ-QST 180
           +   +  V        +       + A D    +  Q A VN++   +    P+ +    
Sbjct: 57  KVDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEPHEI 115

Query: 181 YSFVVPEDVFKNS 193
              V P  + K+S
Sbjct: 116 EEIVFPRQLAKHS 128

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
             F +  YS V+P+DV +   +  +K +  +
Sbjct: 11  TGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN 41

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.6 bits (96), Expect = 6e-06
 Identities = 6/69 (8%), Positives = 12/69 (17%)

Query: 1   MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
                     S           G   +        +  Y   V+ +D        +V   
Sbjct: 36  YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNAT 95

Query: 61  ITDVNDNEP 69
           +        
Sbjct: 96  VCSCEGKAI 104

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.9 bits (89), Expect = 5e-05
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 6/109 (5%)

Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK-DANLFRIDR 123
           NDN P+ +P  + +  +          V+  +D D           ++   D        
Sbjct: 1   NDNGPVPSPRVFTMCDQ-----NPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55

Query: 124 SSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
           S G   +       +   Y I V   D   N         +        
Sbjct: 56  SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 104

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 7/111 (6%)

Query: 65  NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRS 124
           NDN PIF+P  Y   + ++        + +            +   +   +   F I   
Sbjct: 2   NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61

Query: 125 SG----ELFVTRGNFLSRSNSYHINVSAMDGGGN---KCSQDAQVNINIIN 168
                  L   +G        Y + ++  +         +  A V + + +
Sbjct: 62  PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 15  HFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQITDV 64
               +S  G +  A+ LDFE R  Y   +   +         ++TA V + + DV
Sbjct: 59  TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.85
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.85
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.83
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.8
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.73
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.65
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.54
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.53
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.53
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.38
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.38
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.35
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.16
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.15
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.1
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.1
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	98.99
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	98.96
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	98.65
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	95.51
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	94.65
d1edqa1	109	Chitinase A, N-terminal domain N {Serratia marcesc	84.86

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.85  E-value=2.9e-21  Score=131.33  Aligned_cols=103  Identities=33%  Similarity=0.496  Sum_probs=92.2

Q ss_pred             cCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCCC----CCcEEEeCCccEEEEe-eecC
Q psy11061         64 VNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGKD----ANLFRIDRSSGELFVT-RGNF  135 (212)
Q Consensus        64 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~~----~~~F~id~~~G~i~~~-~~~~  135 (212)
                      .|||+|.|....|.+.|+|+.++|+.++++.|+|+|.+   .|+.+.|+|..+..    .++|.|++.+|.|++. ..  
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~--   78 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG--   78 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC--
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccc--
Confidence            49999999999999999999999999999999999986   46789999987643    3689999999999885 46  


Q ss_pred             CC--CCCeEEEEEEEEECCCCCeeeeEEEEEEEee
Q psy11061        136 LS--RSNSYHINVSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       136 ld--~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      ||  ....|.|.|.|+|.++++++++++|.|+|.|
T Consensus        79 LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          79 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             CCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             cCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            77  7899999999999988888899999999986

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.3e-21  Score=129.37  Aligned_cols=102  Identities=31%  Similarity=0.448  Sum_probs=91.0

Q ss_pred             CCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCC---CCceEEEEEEcCC----CCCcEEEeCCccEEEEe-eecCC
Q psy11061         65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGK----DANLFRIDRSSGELFVT-RGNFL  136 (212)
Q Consensus        65 nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~---~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~-~~~~l  136 (212)
                      |||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.+   .++.+.|+|..+.    ...+|.|++.+|.|++. ..  |
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~--l   78 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG--L   78 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSC--C
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEecc--c
Confidence            8999999999999999999999999999999999986   4568999998753    24689999999999864 45  7


Q ss_pred             C--CCCeEEEEEEEEECCCCCeeeeEEEEEEEee
Q psy11061        137 S--RSNSYHINVSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       137 d--~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      |  ....|.|.|.|+|.++++++++++|.|.|.|
T Consensus        79 D~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          79 DRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             CTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             ccccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            7  8899999999999999988999999999986

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.83  E-value=4.5e-21  Score=129.09  Aligned_cols=101  Identities=18%  Similarity=0.369  Sum_probs=92.3

Q ss_pred             CCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC------CC
Q psy11061         66 DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS------RS  139 (212)
Q Consensus        66 d~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld------~~  139 (212)
                      ||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.+.++.++|++.. +..++|.|++.+|.|++.+.  ||      ..
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~-~~~~~F~id~~tG~i~~~~~--lD~E~~~~~~   77 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGN--LDRESEYVKN   77 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSC--CCTTSSSCCS
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC-CCcccceeccccceEEEccc--cChhhccccC
Confidence            67999999999999999999999999999999999989999999975 45689999999999999998  77      34


Q ss_pred             CeEEEEEEEEECCCCCeeeeEEEEEEEeeC
Q psy11061        140 NSYHINVSAMDGGGNKCSQDAQVNINIINS  169 (212)
Q Consensus       140 ~~~~l~v~a~D~~~~~~~~~~~v~I~v~d~  169 (212)
                      ..|.|.|.|+|.+.|+++++++|.|+|.|+
T Consensus        78 ~~y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          78 NTYTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             SCCEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             CeEEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            689999999999999888999999999886

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.8e-19  Score=122.36  Aligned_cols=102  Identities=30%  Similarity=0.469  Sum_probs=84.7

Q ss_pred             CCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCC--CCCceEEEEEEcCC----CCCcEEEeCCccEE-EEeeecCCC
Q psy11061         65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDS--DRFGTISYKIVTGK----DANLFRIDRSSGEL-FVTRGNFLS  137 (212)
Q Consensus        65 nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~--~~~~~i~y~i~~~~----~~~~F~id~~~G~i-~~~~~~~ld  137 (212)
                      |||+|+|.+..|.+.|+|+.++|+.++++.|+|+|.  +.|+.+.|+|..+.    ..++|.|++.+|.+ .+...  ||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~--lD   78 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAG--LD   78 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSC--CC
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccc--cc
Confidence            899999999999999999999999999999999996  45788999998753    34689999999976 45566  77


Q ss_pred             --CCCeEEEEEEEEECCCCC---eeeeEEEEEEEee
Q psy11061        138 --RSNSYHINVSAMDGGGNK---CSQDAQVNINIIN  168 (212)
Q Consensus       138 --~~~~~~l~v~a~D~~~~~---~~~~~~v~I~v~d  168 (212)
                        ....|.|.|+|+|.++++   .++.++|.|.|.|
T Consensus        79 ~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          79 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence              788999999999976432   4677888888875

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.9e-19  Score=125.98  Aligned_cols=125  Identities=15%  Similarity=0.203  Sum_probs=105.8

Q ss_pred             ecCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCCCCCcEEEeCCccEEEEeeecCCC-CCCe
Q psy11061         63 DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLS-RSNS  141 (212)
Q Consensus        63 d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~~~~~F~id~~~G~i~~~~~~~ld-~~~~  141 (212)
                      |+|++.|.|.+..|.+.|+|+.+.|+.|+++.|+|.|.  ++.+.|++..   ...|.|++ +|.|.+.+.  || ....
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~~---~~~F~i~~-~G~I~~~~~--ld~e~~~   76 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESSE---PADFKVDE-DGTVYAVRS--FPLTAEQ   76 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECCC---SSEEEEET-TTEEEEESC--CSCSSSC
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceecccc---ceeeeccc-cEEEEEecc--cCcccce
Confidence            68999999999999999999999999999999999995  4568998842   35799997 599999999  88 5567


Q ss_pred             EEEEEEEEECCCCCeeeeEEEEEEEeeCCCCCCeEecCc-eEEEEeCCCCCCeEEE
Q psy11061        142 YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQST-YSFVVPEDVFKNSIVG  196 (212)
Q Consensus       142 ~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f~~~~-~~~~v~e~~~~g~~v~  196 (212)
                      |.|.|.|+|.+++.. +.++|+|.+.|.|++.|.|.... +...++|+...|+.++
T Consensus        77 y~l~V~A~D~g~~~~-~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~l  131 (136)
T d1op4a_          77 AKFLIYAQDKETQEK-WQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGAL  131 (136)
T ss_dssp             EEEEEEEEETTTTEE-EEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSCC
T ss_pred             EEEEEEEEecCCcce-eeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCcc
Confidence            999999999987754 56789999999999999997554 4567888887776543

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.73  E-value=1.1e-17  Score=113.19  Aligned_cols=103  Identities=19%  Similarity=0.311  Sum_probs=85.1

Q ss_pred             cCCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCc-eEEEEEEcCCCCCcEEEe----CCccEEEEeeecCCC-
Q psy11061         64 VNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRID----RSSGELFVTRGNFLS-  137 (212)
Q Consensus        64 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~-~i~y~i~~~~~~~~F~id----~~~G~i~~~~~~~ld-  137 (212)
                      .|||+|+|.+..|.+.|+|+ ++|+.++++.|+|+|.+.+. ...|.+..+...+.|.|.    ..+|.|.+.+.  || 
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~--lD~   77 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKG--LDF   77 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSC--CCC
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeee--ccc
Confidence            49999999999999999999 57999999999999987443 233444455667889985    35788988888  88 


Q ss_pred             -CCCeEEEEEEEEEC---CCCCeeeeEEEEEEEeeC
Q psy11061        138 -RSNSYHINVSAMDG---GGNKCSQDAQVNINIINS  169 (212)
Q Consensus       138 -~~~~~~l~v~a~D~---~~~~~~~~~~v~I~v~d~  169 (212)
                       ....|.|.|.|+|.   +.++++++++|.|.|.||
T Consensus        78 E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          78 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             SSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence             88999999999997   455678899999999986

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.65  E-value=2.8e-17  Score=110.13  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=78.6

Q ss_pred             CCCCCccCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCc-eEEEEEEcCCCCCcEEEe-CCccEEEEeeecCCC--CCC
Q psy11061         65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRID-RSSGELFVTRGNFLS--RSN  140 (212)
Q Consensus        65 nd~~P~f~~~~~~~~v~e~~~~g~~v~~~~a~D~D~~~~~-~i~y~i~~~~~~~~F~id-~~~G~i~~~~~~~ld--~~~  140 (212)
                      |||+|.|.+.  ...|.|+.+.+.   .++|+|+|.+.++ .+.|+|..+.. ..|.+. ...|.+.....  ++  ..+
T Consensus         1 NDNaP~f~~~--~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~--ld~e~~~   72 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSD-LTWKAELDSKGTSMLLSP--TQQLKKG   72 (107)
T ss_dssp             CCSCCCBSCC--CEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSS-SSCBCCBCTTSSEEEEBC--SSCCCSS
T ss_pred             CCCCCccCCC--EEEEEecCCCce---eEEEEcCccCccceeEeeeeecccc-cccccccccceeeeeeec--cccccce
Confidence            8999999864  556888877654   4789999999877 57888876544 445543 34455555556  66  788


Q ss_pred             eEEEEEEEEECCCCCeeeeEEEEEEEeeCCCCCCeE
Q psy11061        141 SYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLF  176 (212)
Q Consensus       141 ~~~l~v~a~D~~~~~~~~~~~v~I~v~d~nd~~P~f  176 (212)
                      .|.|.|.|+|.|+|+.  +.+++|+|.|+||++|.+
T Consensus        73 ~y~l~V~a~D~G~p~~--~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          73 DYSIYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             CBCCEEECCSSSCCCE--EEECCEEECSCSSSCCCC
T ss_pred             eEEEEEEEEeCCCCce--EEEEEEEEEEeeCCcCcc
Confidence            9999999999999875  567899999999999975

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.4e-14  Score=95.74  Aligned_cols=89  Identities=21%  Similarity=0.353  Sum_probs=76.4

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcC----CCCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEE
Q psy11061         77 NVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMD  150 (212)
Q Consensus        77 ~~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~----~~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D  150 (212)
                      .+.|+||.+ |.....+.+.|.|.+.|+.+.|+|..+    ++.++|.||+.+|.|+++++  ||  ....|.|.|.|+|
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~--LDrE~~~~y~l~V~A~D   84 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRAHAVD   84 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCSEEEEEEEEEC
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeee--cchhcCcceEEEEEEEE
Confidence            457899977 555667888899988888999999753    33568999999999999999  88  8899999999999


Q ss_pred             CCCCCeeeeEEEEEEEee
Q psy11061        151 GGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       151 ~~~~~~~~~~~v~I~v~d  168 (212)
                      .+++..++.++|.|+|.|
T Consensus        85 ~g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          85 INGNQVENPIDIVINVID  102 (102)
T ss_dssp             TTSCBSSCCEEEEEEEEC
T ss_pred             CCCCceeeeEEEEEEEeC
Confidence            999888889999999986

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.53  E-value=4.8e-14  Score=92.84  Aligned_cols=88  Identities=22%  Similarity=0.435  Sum_probs=76.5

Q ss_pred             EEEecCCCCCcEEEEEEEEeCCCCCCceEEEEEEcCC----CCCcEEEeCCccEEEEeeecCCC--CCCeEEEEEEEEEC
Q psy11061         78 VSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK----DANLFRIDRSSGELFVTRGNFLS--RSNSYHINVSAMDG  151 (212)
Q Consensus        78 ~~v~e~~~~g~~v~~~~a~D~D~~~~~~i~y~i~~~~----~~~~F~id~~~G~i~~~~~~~ld--~~~~~~l~v~a~D~  151 (212)
                      +.|+||.+ +.....+.+.|.|.+.|+.+.|+|..++    +.++|.|++.+|.|++.+.  ||  ....|.|.|.|+|.
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~--lDrE~~~~y~l~V~a~D~   83 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP--LDREEYDKYVLSSHAVSE   83 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSC--CCTTTCCEEEEEEEEEES
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeee--cccccCCEEEEEEEEEEC
Confidence            67999865 5556788888999888999999998753    2357999999999999999  88  88999999999999


Q ss_pred             CCCCeeeeEEEEEEEee
Q psy11061        152 GGNKCSQDAQVNINIIN  168 (212)
Q Consensus       152 ~~~~~~~~~~v~I~v~d  168 (212)
                      ++++.++.+.|+|+|.|
T Consensus        84 g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          84 NGSPVEEPMEITINVID  100 (100)
T ss_dssp             SSCBCSCCEEEEEEEEC
T ss_pred             CCCcEEeEEEEEEEEeC
Confidence            99988899999999986

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.1e-12  Score=86.54  Aligned_cols=63  Identities=21%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|....   ++.++|.||+.+|.|+++++||||+...|.|.|.|.|.|+  +++++.+.|.|.|
T Consensus        35 ~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          35 SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID  102 (102)
T ss_dssp             CCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTSCBSSCCEEEEEEEEC
T ss_pred             eEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECCCCceeeeEEEEEEEeC
Confidence            4789996422   3457999999999999999999999999999999999875  6788999999886

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.38  E-value=1.2e-12  Score=86.06  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=55.0

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|..+.   .+.++|.|++.+|.|+++++||||....|.|.|.|.|.|+  +++++.++|+|.|
T Consensus        33 ~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          33 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID  100 (100)
T ss_dssp             CEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEEC
T ss_pred             cEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCCCcEEeEEEEEEEEeC
Confidence            4899996543   3446899999999999999999999999999999999975  6788999999987

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.9e-11  Score=84.55  Aligned_cols=84  Identities=15%  Similarity=0.278  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCC-ceEEEEEEEEeecCCCCCccCCCc-eEE
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGL-STTAMVRIQITDVNDNEPIFNPVE-YNV   78 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~-~~~~~v~i~V~d~nd~~P~f~~~~-~~~   78 (212)
                      .+.|++.+.    ..|.|++ +|.|+++++||||. ..|.|.|.|+|.|+. .+.+.|+|.+.|.|++.|.|.... +.+
T Consensus        45 ~~~y~~~~~----~~F~i~~-~G~I~~~~~ld~e~-~~y~l~V~A~D~g~~~~~~t~V~i~v~d~nd~~p~~~~~~~~~i  118 (136)
T d1op4a_          45 KVQYESSEP----ADFKVDE-DGTVYAVRSFPLTA-EQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEI  118 (136)
T ss_dssp             CEEEECCCS----SEEEEET-TTEEEEESCCSCSS-SCEEEEEEEEETTTTEEEEEEEEECCCCCCCCCCSSCCCCSCCC
T ss_pred             cceeccccc----eeeeccc-cEEEEEecccCccc-ceEEEEEEEEecCCcceeeeEEEEEEcccCCCCCcccCCCCceE
Confidence            367888543    5799998 69999999999997 469999999998863 467889999999999999996544 456


Q ss_pred             EEecCCCCCcEE
Q psy11061         79 SLRDDIQTTTAF   90 (212)
Q Consensus        79 ~v~e~~~~g~~v   90 (212)
                      .++|....|..+
T Consensus       119 ~~P~~~~~~~~~  130 (136)
T d1op4a_         119 VFPRQLAKHSGA  130 (136)
T ss_dssp             SSCCCCCCCCSC
T ss_pred             EccCcCCCCCCc
Confidence            677776665443

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.15  E-value=3.7e-11  Score=79.65  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=53.8

Q ss_pred             CeEEEEcCCCCCcCceEEeCCceEEEECCcCCcCC----CCeEEEEEEEEeCCC--CceEEEEEEEEeec
Q psy11061          1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES----RSSYEFPVVATDRGG--LSTTAMVRIQITDV   64 (212)
Q Consensus         1 ~i~Y~i~~~~~~~~~F~id~~tg~i~~~~~lD~E~----~~~~~l~i~a~d~~~--~~~~~~v~i~V~d~   64 (212)
                      .++|+|.++.  .++|.|++.+|.|++++.||||.    ...|.|.|.|.|.|.  +++++.+.|+|.|+
T Consensus        40 ~i~y~i~~~~--~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          40 KLSYFIGNDP--ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             CEEEEECCCS--SCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             ceeEEecCCC--cccceeccccceEEEccccChhhccccCCeEEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            4799997654  68999999999999999999996    367999999999885  67888899998886

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.2e-10  Score=77.65  Aligned_cols=63  Identities=35%  Similarity=0.469  Sum_probs=52.8

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEE-CCcCCcCCCCeEEEEEEEEeCCC--CceEEEEEEEEee
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICI-AQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~-~~~lD~E~~~~~~l~i~a~d~~~--~~~~~~v~i~V~d   63 (212)
                      +|+|+|..+.   ....+|.|++.+|.|++ .+.||||....|.|.|+|+|.|+  +++++.|.|.|.|
T Consensus        44 ~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          44 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             CCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             eEEEEEecCCccccceeEEEEecccceEEEEecccccccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            4789995543   23478999999999987 45799999999999999999874  6788999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.10  E-value=6.1e-11  Score=79.30  Aligned_cols=63  Identities=33%  Similarity=0.444  Sum_probs=53.0

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEEEEC-CcCCcCCCCeEEEEEEEEeCC--CCceEEEEEEEEee
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRG--GLSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i~~~-~~lD~E~~~~~~l~i~a~d~~--~~~~~~~v~i~V~d   63 (212)
                      +|.|+|..+.   ...++|.|++.+|.|++. ++||||....|.|.|+|+|.+  ++++.+.|.|+|.|
T Consensus        45 ~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          45 VLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             CCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             EEEEEEecCCCCccccceeeeeecceeEEEeccccCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            4789996543   234789999999999985 579999999999999999975  47888899999986

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=4.4e-10  Score=75.04  Aligned_cols=63  Identities=35%  Similarity=0.517  Sum_probs=49.5

Q ss_pred             CeEEEEcCCC---CCcCceEEeCCceEE-EECCcCCcCCCCeEEEEEEEEeCCC-----CceEEEEEEEEee
Q psy11061          1 MVNYTLGESP---SRTNHFYMKSVSGEI-CIAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQITD   63 (212)
Q Consensus         1 ~i~Y~i~~~~---~~~~~F~id~~tg~i-~~~~~lD~E~~~~~~l~i~a~d~~~-----~~~~~~v~i~V~d   63 (212)
                      +|+|+|..+.   ....+|.|++.+|.| ++.++||||....|.|.|+|+|.++     +++.+.|.|.|.|
T Consensus        43 ~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          43 MLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             CCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             eeEEEeccCCcCCCccceEEecCccceEEEeccccccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            4799995532   234789999999975 5678899999999999999999652     4567788887765

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.96  E-value=6.6e-11  Score=78.33  Aligned_cols=69  Identities=9%  Similarity=0.097  Sum_probs=55.6

Q ss_pred             eEEEEcCCCCCcCceEE-eCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCCCCCccC
Q psy11061          2 VNYTLGESPSRTNHFYM-KSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFN   72 (212)
Q Consensus         2 i~Y~i~~~~~~~~~F~i-d~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd~~P~f~   72 (212)
                      ++|+|..+.  ...|.+ ....|.+...++||||....|.|.|.|+|+|+......++|+|.|+|+|+|.|.
T Consensus        38 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ld~e~~~~y~l~V~a~D~G~p~~~~tv~V~V~Dc~dn~~~c~  107 (107)
T d1l3wa5          38 YKVSLSHGS--DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQ  107 (107)
T ss_dssp             CCCBCCSCS--SSSCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECCSSSCCCEEEECCEEECSCSSSCCCCC
T ss_pred             Eeeeeeccc--ccccccccccceeeeeeeccccccceeEEEEEEEEeCCCCceEEEEEEEEEEeeCCcCccC
Confidence            578887765  234444 334555666688999999999999999999988888899999999999999873

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.65  E-value=3.4e-08  Score=65.25  Aligned_cols=52  Identities=29%  Similarity=0.443  Sum_probs=45.4

Q ss_pred             cCceEEe----CCceEEEECCcCCcCCCCeEEEEEEEEeCC-----CCceEEEEEEEEeec
Q psy11061         13 TNHFYMK----SVSGEICIAQDLDFESRSSYEFPVVATDRG-----GLSTTAMVRIQITDV   64 (212)
Q Consensus        13 ~~~F~id----~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~-----~~~~~~~v~i~V~d~   64 (212)
                      .+.|.|.    ..+|.|++.++||||....|.|.|+|+|.+     ++++++.|+|.|.||
T Consensus        53 ~~~f~i~~~~~~~~g~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          53 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             TSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ccceEEEeecCCCceEEEeeeecccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            5788885    468999999999999999999999999973     267889999999986

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.044  Score=34.40  Aligned_cols=63  Identities=6%  Similarity=-0.100  Sum_probs=42.8

Q ss_pred             eEEEEc--CCCCCcCceEEeCCceEEEECCcCCcCCCCeEEEEEEEEeCCCCceEEEEEEEEeecCC
Q psy11061          2 VNYTLG--ESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND   66 (212)
Q Consensus         2 i~Y~i~--~~~~~~~~F~id~~tg~i~~~~~lD~E~~~~~~l~i~a~d~~~~~~~~~v~i~V~d~nd   66 (212)
                      ++|++.  .+..-..|..+|+.+|.|+-.-.  .+....|.+.|.|+|.++........+.+-.++.
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V   97 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGANGSHVPQTSSVFSIEV   97 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCCCcccccEEEEEEEEEe
Confidence            567773  33334589999999999997543  3445789999999998765554444444444443

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.24  Score=30.79  Aligned_cols=63  Identities=17%  Similarity=0.036  Sum_probs=42.4

Q ss_pred             EEEEEEc--C-CCCCcEEEeCCccEEEEeeecCCCCCCeEEEEEEEEECCCCCe---eeeEEEEEEEeeCC
Q psy11061        106 ISYKIVT--G-KDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKC---SQDAQVNINIINSH  170 (212)
Q Consensus       106 i~y~i~~--~-~~~~~F~id~~~G~i~~~~~~~ld~~~~~~l~v~a~D~~~~~~---~~~~~v~I~v~d~n  170 (212)
                      +.|++..  + .-+.|..+|+.+|.+.-...  -+..+.|.+.|.|+|.++...   ...-.+.|+|...+
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V~P~~  101 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPED  101 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESSC
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCCCcccccEEEEEEEEEeCCCC
Confidence            5666643  2 23579999999999987655  346789999999999776532   22233555555443

>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Chitinase A, N-terminal domain N
species: Serratia marcescens [TaxId: 615]

Probab=84.86  E-value=2.5  Score=26.20  Aligned_cols=29  Identities=17%  Similarity=0.544  Sum_probs=21.7

Q ss_pred             CCCeEEEEEEEEECCCCCeeeeEEEEEEEee
Q psy11061        138 RSNSYHINVSAMDGGGNKCSQDAQVNINIIN  168 (212)
Q Consensus       138 ~~~~~~l~v~a~D~~~~~~~~~~~v~I~v~d  168 (212)
                      +.+.|.++|+++|..|  .+....+.|.|-|
T Consensus        81 kgG~y~m~V~LcN~~G--cs~S~~v~V~VAD  109 (109)
T d1edqa1          81 KGGRYQMQVALCNADG--CTASDATEIVVAD  109 (109)
T ss_dssp             SCEEEEEEEEEEETTE--EEECCCEEEEEEC
T ss_pred             CCCEEEEEEEEEcCCC--cccccCEEEEecC
Confidence            6799999999999876  4444566666654