Psyllid ID: psy11081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
cccEEEEEccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHccccccccccEEEEEcHHHHHHHHHHHHHccc
ccEEEEEEcccccEEcccccEEEEEEccEEEEEEEcccccHHHcHHHHHHHHHHccccccccccccccccccccccccEEccccccccccEEEEcccccccHHHHcHEEEEEEcccccccccEEEEEEcccccHHEEccccccccccccHcEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHEHEEccccEEEEEccHHHHHHHHHHHHccc
RECISIHVGQAGVQIGNACWELYclehgiqpddanvgqAGVQIGNACWELYclehgiqpdgqmpsdktvgggddsfntffsetgsgkhvpravfvdleptvvggddsfntffsetgsgkhvpravfvdleptvvdevrtgtyrqlfhpeqlitgkedaannyarghytigKEIVDVVLDRIRKLSDQCTGLQGflifhsfgggtgsgFTSLLMERLSVdygkksklefaiypapqvstavvepynsiltthttlehsdcafmvdnEAIKNEILLQILQKL
RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSetgsgkhvprAVFVDLEPTVVGGDDSFNTFFsetgsgkhvpravfvdlepTVVDEVRTGtyrqlfhpeqlitgkedaaNNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHsfgggtgsgftsLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
**CISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGI*******************************VPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL***
**CIS**VGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSD******DDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQK*
RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
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RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
P18288 450 Tubulin alpha chain, test N/A N/A 0.742 0.462 0.757 1e-103
P06603 450 Tubulin alpha-1 chain OS= yes N/A 0.742 0.462 0.764 1e-102
P06605 450 Tubulin alpha-3 chain OS= yes N/A 0.742 0.462 0.761 1e-102
Q32KN8 450 Tubulin alpha-3 chain OS= yes N/A 0.742 0.462 0.753 1e-102
Q68FR8 450 Tubulin alpha-3 chain OS= yes N/A 0.742 0.462 0.753 1e-102
P05214 450 Tubulin alpha-3 chain OS= yes N/A 0.742 0.462 0.753 1e-102
Q13748 450 Tubulin alpha-3C/D chain yes N/A 0.742 0.462 0.753 1e-102
P08537 449 Tubulin alpha chain OS=Xe N/A N/A 0.742 0.463 0.75 1e-102
Q5R1W4 451 Tubulin alpha-1B chain OS yes N/A 0.742 0.461 0.746 1e-102
Q6P9V9 451 Tubulin alpha-1B chain OS yes N/A 0.742 0.461 0.746 1e-101
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function desciption
 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/268 (75%), Positives = 207/268 (77%), Gaps = 60/268 (22%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
           RECISIHVGQAG                            VQIGNACWELYCLEHGIQPD
Sbjct: 2   RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33

Query: 61  GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
           GQMPSDKT+GGGD                                DSFNTFFSETG+GKH
Sbjct: 34  GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61

Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
           VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD+VLDR
Sbjct: 62  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 121

Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
           +RKLSDQCTGLQGFLIFHSFGGGTGSGF SLLMERLSVDYGKKSKLEFAIYPAPQVSTAV
Sbjct: 122 VRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181

Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
           VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Oncorhynchus mykiss (taxid: 8022)
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1 Back     alignment and function description
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=2 SV=1 Back     alignment and function description
>sp|Q32KN8|TBA3_BOVIN Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1 Back     alignment and function description
>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1 Back     alignment and function description
>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1 Back     alignment and function description
>sp|Q13748|TBA3C_HUMAN Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3 Back     alignment and function description
>sp|P08537|TBA_XENLA Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2 Back     alignment and function description
>sp|Q5R1W4|TBA1B_PANTR Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1 Back     alignment and function description
>sp|Q6P9V9|TBA1B_RAT Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
426226676 632 PREDICTED: tubulin alpha-1C chain [Ovis 0.857 0.379 0.723 1e-117
410906439 484 PREDICTED: tubulin alpha-1A chain-like, 0.832 0.481 0.781 1e-109
418207526 415 alpha tubulin 84B, partial [Drosophila m 0.742 0.501 0.761 1e-108
154091298221 alpha-tubulin [Heliconius melpomene] 0.721 0.914 0.820 1e-106
344258599 388 Tubulin alpha chain, nucleomorph [Cricet 0.735 0.530 0.738 1e-105
354501112288 PREDICTED: tubulin alpha-1B chain-like [ 0.721 0.701 0.794 1e-103
195157178 1216 GL12416 [Drosophila persimilis] gi|19411 0.742 0.171 0.764 1e-102
47229230 1029 unnamed protein product [Tetraodon nigro 0.742 0.202 0.662 1e-102
390348239 654 PREDICTED: tubulin alpha-1C chain-like i 0.742 0.318 0.753 1e-101
185135560 450 tubulin alpha chain, testis-specific [On 0.742 0.462 0.757 1e-101
>gi|426226676|ref|XP_004007465.1| PREDICTED: tubulin alpha-1C chain [Ovis aries] Back     alignment and taxonomy information
 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 240/315 (76%), Gaps = 75/315 (23%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
           RECISIHVGQAG                            VQIGNACWELYCLEHGIQPD
Sbjct: 2   RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33

Query: 61  GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVG----------------- 103
           GQMPSDKT+GGGDDSFNTFFSETG+GKHVPRAVFVDLEPTV+G                 
Sbjct: 34  GQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIGELTSRECISVHVGQAGV 93

Query: 104 ------------------------------GDDSFNTFFSETGSGKHVPRAVFVDLEPTV 133
                                         GDDSFNTFFSETG+GKHVPRAVFVDLEPTV
Sbjct: 94  QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 153

Query: 134 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQG 193
           +DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEI+D+VLDR+RKL+DQCTGLQG
Sbjct: 154 IDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQG 213

Query: 194 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 253
           FL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTT
Sbjct: 214 FLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTT 273

Query: 254 LEHSDCAFMVDNEAI 268
           LEHSDCAFMVDNEAI
Sbjct: 274 LEHSDCAFMVDNEAI 288

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Order:

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|410906439|ref|XP_003966699.1| PREDICTED: tubulin alpha-1A chain-like, partial [Takifugu rubripes] Back     alignment and taxonomy information
>gi|418207526|gb|AFX62860.1| alpha tubulin 84B, partial [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|154091298|gb|ABS57456.1| alpha-tubulin [Heliconius melpomene] Back     alignment and taxonomy information
>gi|344258599|gb|EGW14703.1| Tubulin alpha chain, nucleomorph [Cricetulus griseus] Back     alignment and taxonomy information
>gi|354501112|ref|XP_003512637.1| PREDICTED: tubulin alpha-1B chain-like [Cricetulus griseus] Back     alignment and taxonomy information
>gi|195157178|ref|XP_002019473.1| GL12416 [Drosophila persimilis] gi|194116064|gb|EDW38107.1| GL12416 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|47229230|emb|CAG03982.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|390348239|ref|XP_001178141.2| PREDICTED: tubulin alpha-1C chain-like isoform 2 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|185135560|ref|NP_001118163.1| tubulin alpha chain, testis-specific [Oncorhynchus mykiss] gi|135427|sp|P18288.1|TBAT_ONCMY RecName: Full=Tubulin alpha chain, testis-specific gi|213862|gb|AAA68904.1| alpha-tubulin [Oncorhynchus mykiss gairdneri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
ZFIN|ZDB-GENE-040801-77 577 tuba8l3 "tubulin, alpha 8 like 0.610 0.296 0.843 1.1e-110
ZFIN|ZDB-GENE-040426-1970 451 tuba2 "tubulin, alpha 2" [Dani 0.610 0.379 0.865 3.8e-95
ZFIN|ZDB-GENE-100921-8 477 si:ch73-199e17.1 "si:ch73-199e 0.603 0.354 0.875 2.1e-94
UNIPROTKB|Q6PEY2 450 TUBA3E "Tubulin alpha-3E chain 0.610 0.38 0.871 2.6e-94
UNIPROTKB|F1NRB9 456 TUBA3E "Uncharacterized protei 0.610 0.375 0.853 8.9e-94
ZFIN|ZDB-GENE-030131-9167 449 tuba8l "tubulin, alpha 8 like" 0.610 0.380 0.836 7.9e-93
UNIPROTKB|F1NW97 447 TUBA1C "Uncharacterized protei 0.610 0.382 0.836 5.5e-92
ZFIN|ZDB-GENE-040426-1646 449 tuba8l2 "tubulin, alpha 8 like 0.596 0.371 0.857 1.9e-91
UNIPROTKB|P09644 448 P09644 "Tubulin alpha-5 chain" 0.610 0.381 0.824 2.1e-90
UNIPROTKB|C9J2C0 467 TUBA8 "Tubulin alpha-8 chain" 0.617 0.370 0.809 9e-90
ZFIN|ZDB-GENE-040801-77 tuba8l3 "tubulin, alpha 8 like 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
 Identities = 145/172 (84%), Positives = 155/172 (90%)

Query:    98 EPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 157
             + T+ GGDDSFNTFFSETG+GKHVPRA+FVDLEPTV+DEVRTGTYRQLFHPEQLITGKED
Sbjct:   165 DKTIGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLITGKED 224

Query:   158 AANNYARGHYTIGKEIVDVVLDRIR-KLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 216
             AANNYARGHYTIGKEI+D+VLDR + + +DQCTGLQGFLIFH            LLMERL
Sbjct:   225 AANNYARGHYTIGKEIIDLVLDRTQIQQADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 284

Query:   217 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
             SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct:   285 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 336
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0021782 "glial cell development" evidence=IMP
GO:0042552 "myelination" evidence=IMP
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
ZFIN|ZDB-GENE-040426-1970 tuba2 "tubulin, alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100921-8 si:ch73-199e17.1 "si:ch73-199e17.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PEY2 TUBA3E "Tubulin alpha-3E chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRB9 TUBA3E "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9167 tuba8l "tubulin, alpha 8 like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW97 TUBA1C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1646 tuba8l2 "tubulin, alpha 8 like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P09644 P09644 "Tubulin alpha-5 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C9J2C0 TUBA8 "Tubulin alpha-8 chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68363TBA1B_HUMANNo assigned EC number0.74620.74280.4611yesN/A
P06605TBA3_DROMENo assigned EC number0.76110.74280.4622yesN/A
P68369TBA1A_MOUSENo assigned EC number0.74620.74280.4611yesN/A
Q71U36TBA1A_HUMANNo assigned EC number0.74620.74280.4611yesN/A
Q6P9V9TBA1B_RATNo assigned EC number0.74620.74280.4611yesN/A
Q13748TBA3C_HUMANNo assigned EC number0.75370.74280.4622yesN/A
Q2HJ86TBA1D_BOVINNo assigned EC number0.82470.72140.4469yesN/A
P02550TBA1A_PIGNo assigned EC number0.74250.74280.4611yesN/A
Q28IX8TBA_XENTRNo assigned EC number0.81190.72140.4498yesN/A
A5A6J1TBA1A_PANTRNo assigned EC number0.74620.74280.4611yesN/A
Q32KN8TBA3_BOVINNo assigned EC number0.75370.74280.4622yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.73880.74280.4632yesN/A
Q2XVP4TBA1B_PIGNo assigned EC number0.74620.74280.4611yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.74620.74280.4632yesN/A
P68373TBA1C_MOUSENo assigned EC number0.74620.74280.4632yesN/A
P68370TBA1A_RATNo assigned EC number0.74620.74280.4611yesN/A
Q68FR8TBA3_RATNo assigned EC number0.75370.74280.4622yesN/A
P05214TBA3_MOUSENo assigned EC number0.75370.74280.4622yesN/A
P06603TBA1_DROMENo assigned EC number0.76490.74280.4622yesN/A
Q6PEY2TBA3E_HUMANNo assigned EC number0.74620.74280.4622yesN/A
P06604TBA2_DROMENo assigned EC number0.82900.72140.4498yesN/A
P05213TBA1B_MOUSENo assigned EC number0.74620.74280.4611yesN/A
P91910TBA3_CAEELNo assigned EC number0.77350.72140.4488yesN/A
P81947TBA1B_BOVINNo assigned EC number0.74620.74280.4611yesN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.74620.74280.4632yesN/A
Q5R1W4TBA1B_PANTRNo assigned EC number0.74620.74280.4611yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-151
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-145
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-145
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-117
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 2e-73
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 1e-68
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 1e-65
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 3e-65
cd00286 328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 9e-65
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 2e-64
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 7e-61
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 9e-55
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-47
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 6e-40
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 2e-36
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 4e-35
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 2e-05
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 6e-04
cd02202 349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 0.002
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  430 bits (1108), Expect = e-151
 Identities = 180/234 (76%), Positives = 198/234 (84%), Gaps = 32/234 (13%)

Query: 35  NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
           ++GQAG+QIGNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGSGKHVPRAVF
Sbjct: 7   HIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVF 66

Query: 95  VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
           +DLEPTV+                                DEVRTGTYRQLFHPEQLI+G
Sbjct: 67  IDLEPTVI--------------------------------DEVRTGTYRQLFHPEQLISG 94

Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
           KEDAANN+ARGHYTIGKEI+D+VLDRIRKL+D CTGLQGFLIFHSFGGGTGSGF SLL+E
Sbjct: 95  KEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLE 154

Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
           RLSVDYGKKSKLEF +YP+PQVSTAVVEPYNS+LTTH+ LEHSDC+FMVDNEAI
Sbjct: 155 RLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAI 208

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
COG5023 443 Tubulin [Cytoskeleton] 100.0
KOG1374|consensus 448 100.0
PLN00221 450 tubulin alpha chain; Provisional 100.0
PTZ00335 448 tubulin alpha chain; Provisional 100.0
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PLN00220 447 tubulin beta chain; Provisional 100.0
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02187 425 beta_tubulin The tubulin superfamily includes five 100.0
PTZ00010 445 tubulin beta chain; Provisional 100.0
PLN00222 454 tubulin gamma chain; Provisional 100.0
PTZ00387 465 epsilon tubulin; Provisional 100.0
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus 407 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06059 382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286 328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.97
KOG2530|consensus 483 99.96
KOG1375|consensus 369 99.95
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.91
cd02191 303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.81
PF14881180 Tubulin_3: Tubulin domain 99.8
cd02201 304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.71
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.7
PRK13018 378 cell division protein FtsZ; Provisional 99.55
PRK09330 384 cell division protein FtsZ; Validated 99.55
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.48
KOG1374|consensus 448 98.74
PLN00221 450 tubulin alpha chain; Provisional 98.57
PTZ00335 448 tubulin alpha chain; Provisional 98.56
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 98.44
COG0206 338 FtsZ Cell division GTPase [Cell division and chrom 98.43
PLN00222 454 tubulin gamma chain; Provisional 98.35
PLN00220 447 tubulin beta chain; Provisional 98.31
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 98.27
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 98.15
KOG1376|consensus 407 97.9
PTZ00387 465 epsilon tubulin; Provisional 97.82
COG5023 443 Tubulin [Cytoskeleton] 96.86
PF13809 345 Tubulin_2: Tubulin like 96.33
KOG1375|consensus 369 94.15
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2e-75  Score=530.56  Aligned_cols=215  Identities=59%  Similarity=1.025  Sum_probs=194.7

Q ss_pred             CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081          1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF   80 (280)
Q Consensus         1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
                      |||||||+||||||||++||+++|+||||.++|.+.+.++.                              .++.+++||
T Consensus         2 REIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~------------------------------~~er~~vfF   51 (443)
T COG5023           2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDE------------------------------GDERFDVFF   51 (443)
T ss_pred             ceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCccc------------------------------cccccccee
Confidence            89999999999999999997777777776666665554332                              245677767


Q ss_pred             ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081         81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN  160 (280)
Q Consensus        81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn  160 (280)
                      +|.+.+|||||+|+|||||                                .||+.|+.++|+.+|+|+|++.++++|||
T Consensus        52 ~e~~~~k~vPRaI~vDLEP--------------------------------~vid~v~~g~y~~lf~Pen~i~gkegAgN   99 (443)
T COG5023          52 YEASDGKFVPRAILVDLEP--------------------------------GVIDQVRNGPYGSLFHPENIIFGKEGAGN   99 (443)
T ss_pred             eecCCCccccceEEEecCc--------------------------------chHhhhccCccccccChhheeeccccccc
Confidence            7777777777777766654                                77888999999999999999999999999


Q ss_pred             ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081        161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV  240 (280)
Q Consensus       161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~  240 (280)
                      |||+|+|++|+++.+.++|+|||++|.||.||||+++||++||||||+||+|+|+|++|||||.+.+|+|+|.++.+++|
T Consensus       100 nwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~V  179 (443)
T COG5023         100 NWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVV  179 (443)
T ss_pred             cccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081        241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL  277 (280)
Q Consensus       241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~  277 (280)
                      |||||++|++|+|+|++|++|++||+||++||.+.+|
T Consensus       180 VePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~  216 (443)
T COG5023         180 VEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLR  216 (443)
T ss_pred             ecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998876

>KOG1374|consensus Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-102
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-102
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 1e-102
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-102
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-102
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-102
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-102
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-101
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-101
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 1e-101
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-101
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-76
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 6e-38
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 6e-38
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 8e-38
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 8e-38
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 9e-38
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 9e-38
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 9e-38
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-37
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-37
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-36
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 7e-33
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 9e-32
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-23
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-23
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
           RECISIHVGQAG                            VQIGNACWELYCLEHGIQPD
Sbjct: 2   RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61  GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
           GQMPSDKT+GGGD                                DSFNTFFSETG+GKH
Sbjct: 34  GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
           VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
           IRKL+DQCTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
           VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-127
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-126
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-124
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-123
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-122
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 3e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  369 bits (948), Expect = e-127
 Identities = 200/268 (74%), Positives = 208/268 (77%), Gaps = 60/268 (22%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
           RECISIHVGQAGVQIGNACWELYCLEHGIQPD                            
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPD---------------------------- 33

Query: 61  GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
           GQMPSDKT+GGGDDSFNTFFSETG+GKHVPRAVFVDLEPTV+                  
Sbjct: 34  GQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVI------------------ 75

Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
                         DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 76  --------------DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121

Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
           IRKL+DQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181

Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
           VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 99.94
1ofu_A 320 FTSZ, cell division protein FTSZ; bacterial cell d 99.93
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 99.93
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 99.93
2vap_A 364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.93
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.93
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.93
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 99.91
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.85
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.8
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 99.17
3r4v_A 315 Putative uncharacterized protein; tubulin, unknown 97.87
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=2.1e-67  Score=502.73  Aligned_cols=217  Identities=91%  Similarity=1.426  Sum_probs=188.1

Q ss_pred             CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081          1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF   80 (280)
Q Consensus         1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
                      ||||+||+||||||||++|||++|+||||+++|.                            ++++++....+..+++||
T Consensus         2 rEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~----------------------------~~~~~~~~~~~~~~~~fF   53 (451)
T 3ryc_A            2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQ----------------------------MPSDKTIGGGDDSFNTFF   53 (451)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSC----------------------------CCCC-------CGGGGTE
T ss_pred             ceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCC----------------------------cCCcccccccccchhhhc
Confidence            8999999999999999999555555555555444                            443332222356788877


Q ss_pred             ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081         81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN  160 (280)
Q Consensus        81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn  160 (280)
                      +|+++++|+||||+|||                                ||+||+.|+.++++++|+|+++++++++|||
T Consensus        54 ~e~~~gk~vPRavlvDl--------------------------------Ep~vid~v~~g~~~~lf~p~~~i~gk~gAgN  101 (451)
T 3ryc_A           54 SETGAGKHVPRAVFVDL--------------------------------EPTVIDEVRTGTYRQLFHPEQLITGKEDAAN  101 (451)
T ss_dssp             EECTTSCEEESEEEEES--------------------------------SSHHHHHHHHSTTTTTSCGGGEEECSSCCTT
T ss_pred             ccCCCCccccceeeecC--------------------------------CcchhheeeecccccccCHHHeeeccccccC
Confidence            77666666666666665                                5578888999999999999999999999999


Q ss_pred             ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081        161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV  240 (280)
Q Consensus       161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~  240 (280)
                      |||+|||+.|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|+|+++|||+.+++++|+|++..++.+
T Consensus       102 NwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~ey~kk~~~~~~v~P~~~~s~~v  181 (451)
T 3ryc_A          102 NYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV  181 (451)
T ss_dssp             CHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCTTTCCCT
T ss_pred             CCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHhcCcceEEEEEEecCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081        241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL  277 (280)
Q Consensus       241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~  277 (280)
                      ++|||++|++++|.+++|+++++||+||++||.+.++
T Consensus       182 vepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~  218 (451)
T 3ryc_A          182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD  218 (451)
T ss_dssp             THHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHC
T ss_pred             ceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988764
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 3e-95
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-94
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 9e-87
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  278 bits (712), Expect = 3e-95
 Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 34/236 (14%)

Query: 35  NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
             GQ G QIG   WE+   EHGI P G    D  +                         
Sbjct: 8   QAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ------------------------ 43

Query: 95  VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
                      +  N +++E    K+VPRA+ VDLEP  +D VR+G + Q+F P+  + G
Sbjct: 44  ----------LERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 93

Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
           +  A NN+A+GHYT G E+VD VLD +RK S+ C  LQGF + HS GGGTGSG  +LL+ 
Sbjct: 94  QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLIS 153

Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
           ++  +Y  +    F++ P+P+VS  VVEPYN+ L+ H  +E++D  + +DNEA+ +
Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 209
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 98.83
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 98.8
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 98.77
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 98.71
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 98.66
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 98.61
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 97.64
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-68  Score=473.10  Aligned_cols=217  Identities=88%  Similarity=1.373  Sum_probs=189.9

Q ss_pred             CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081          1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF   80 (280)
Q Consensus         1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
                      |||||||+||||||||.+||+++|+||+|+++|....+..                            ....+..+++||
T Consensus         2 rEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~----------------------------~~~~~~~~~~fF   53 (245)
T d1tuba1           2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKT----------------------------IGGGDDSFNTFF   53 (245)
T ss_dssp             CCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTT----------------------------SSTTCCCSCCSS
T ss_pred             CcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccc----------------------------cccccccchhhh
Confidence            8999999999999999999777777777777766443221                            111244556644


Q ss_pred             ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081         81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN  160 (280)
Q Consensus        81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn  160 (280)
                      .|.                                ++++++||++++|+||++|+.+++++++++|+|++++.+++++||
T Consensus        54 ~e~--------------------------------~~~~~~pRavlvD~E~~vI~~i~~~~~~~~f~~~~~i~~~~gsgN  101 (245)
T d1tuba1          54 SET--------------------------------GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAAN  101 (245)
T ss_dssp             CSS--------------------------------SCTTTSCSCCEEESSHHHHHHHSGGGCSCCCCSSSEEECCSCCCC
T ss_pred             hcc--------------------------------cCCccccceeEecCCcceeeeeccCcchhccCccccccCCCCccc
Confidence            444                                455555555556666788999999999999999999999999999


Q ss_pred             ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081        161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV  240 (280)
Q Consensus       161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~  240 (280)
                      |||+|||+.|+++.|+++|.|||++|+||++|||+++||++||||||+|++++|+|+|+||++.+++++|+|++..++++
T Consensus       102 NwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~yp~~~~~~~~V~P~~~~~~~v  181 (245)
T d1tuba1         102 NYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV  181 (245)
T ss_dssp             SSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHHTTTSCEEEEECCCCSSCSTTT
T ss_pred             chHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHhcccccccceEEeccccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998778999


Q ss_pred             hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081        241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL  277 (280)
Q Consensus       241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~  277 (280)
                      +||||++|+|++|.+++|++++|||+||++||.++++
T Consensus       182 vqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~  218 (245)
T d1tuba1         182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD  218 (245)
T ss_dssp             THHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSC
T ss_pred             cccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999765
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure