Psyllid ID: psy11082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY
ccccccccEEEEEEccccccccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccEEccEEEcccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccEEcccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccc
cccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHEEEEcccccEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHEEEEEEEEEEEcccccccHHHHHHHccccccEcccccccccEcccccHHHHHccHHHHHHHHccHHHHHHccccccccEEEEEEEEccccccHHccHHEEEEEccccccccccHcHccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccc
MSVMGLQGFLIfhsfgggtgsgFTSLLMERLSVdygkksklefaiypapqvstavvepynsiltthttlehsdcafmvdneaIYDICRRnldierptytnlNRLIGQIVSSItaslrvpdlgqIVSSITAslrfdgalnvdltefqtnlvpyprihfplvtyapvisaEKAYHEQLSVMEITnacfepanqmvkcdprhgkymaccmlyrgdvvpkdvnapvginyqpptvvpggdlakVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWyvgegmeegefsEAREDLAALEKDYeevgmdsvegegegaeey
MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYeevgmdsvegegegaeey
MSVMGLQGFLIFHsfgggtgsgftsLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY
****GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG**************************************
MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSV**********
MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG**************
*SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD************
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MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxSVEGEGEGAEEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
P09645324 Tubulin alpha-8 chain (Fr no N/A 0.934 0.919 0.857 1e-156
Q8WQ47450 Tubulin alpha chain OS=Le N/A N/A 0.937 0.664 0.842 1e-155
Q68FR8450 Tubulin alpha-3 chain OS= yes N/A 0.905 0.642 0.871 1e-155
P05214450 Tubulin alpha-3 chain OS= yes N/A 0.905 0.642 0.871 1e-155
Q13748450 Tubulin alpha-3C/D chain yes N/A 0.905 0.642 0.871 1e-155
Q25008451 Tubulin alpha-1 chain OS= N/A N/A 0.937 0.662 0.845 1e-155
P18288450 Tubulin alpha chain, test N/A N/A 0.905 0.642 0.871 1e-155
P06603450 Tubulin alpha-1 chain OS= yes N/A 0.902 0.64 0.88 1e-155
P68373449 Tubulin alpha-1C chain OS yes N/A 0.934 0.663 0.848 1e-155
P68365449 Tubulin alpha-1C chain OS yes N/A 0.934 0.663 0.848 1e-155
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1 Back     alignment and function desciption
 Score =  552 bits (1422), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/336 (85%), Positives = 293/336 (87%), Gaps = 38/336 (11%)

Query: 5   GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
           GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT
Sbjct: 6   GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 65

Query: 65  THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
           THTTLE SDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV               
Sbjct: 66  THTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV--------------- 110

Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
            SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY+P+ISAEKAYHEQLSV EITNA
Sbjct: 111 -SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNA 169

Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
           CFEP+NQMVKCDPRHGKYMACCMLYRGDVVPKDVNA                      VG
Sbjct: 170 CFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVG 229

Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
           INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 230 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 289

Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 319
           EGEFSEAREDLAALEKDYEEVG DS++GE EG EEY
Sbjct: 290 EGEFSEAREDLAALEKDYEEVGTDSMDGEDEG-EEY 324
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Gallus gallus (taxid: 9031)
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2 Back     alignment and function description
>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1 Back     alignment and function description
>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1 Back     alignment and function description
>sp|Q13748|TBA3C_HUMAN Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3 Back     alignment and function description
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1 Back     alignment and function description
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function description
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1 Back     alignment and function description
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
332027696 595 Tubulin alpha-1 chain [Acromyrmex echina 0.937 0.502 0.875 1e-159
322788223 453 hypothetical protein SINV_15229 [Solenop 0.937 0.660 0.875 1e-159
307182561415 Tubulin alpha-1 chain [Camponotus florid 0.937 0.720 0.869 1e-159
388523601 450 tubulin alpha-1 chain [Cryptocercus punc 0.937 0.664 0.875 1e-158
47229230 1029 unnamed protein product [Tetraodon nigro 0.937 0.290 0.824 1e-158
321478016 450 hypothetical protein DAPPUDRAFT_220904 [ 0.937 0.664 0.872 1e-158
321472551 450 hypothetical protein DAPPUDRAFT_301837 [ 0.937 0.664 0.872 1e-158
307208702 463 Tubulin alpha-1 chain [Harpegnathos salt 0.937 0.645 0.869 1e-158
72057634 463 PREDICTED: tubulin alpha chain-like isof 0.937 0.645 0.815 1e-157
72057626 450 PREDICTED: tubulin alpha chain-like isof 0.937 0.664 0.815 1e-157
>gi|332027696|gb|EGI67764.1| Tubulin alpha-1 chain [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/336 (87%), Positives = 296/336 (88%), Gaps = 37/336 (11%)

Query: 5   GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
           GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT
Sbjct: 276 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 335

Query: 65  THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
           THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV               
Sbjct: 336 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV--------------- 380

Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
            SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSV EITNA
Sbjct: 381 -SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 439

Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
           CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA                      VG
Sbjct: 440 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 499

Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
           INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 500 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 559

Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 319
           EGEFSEAREDLAALEKDYEEVGMDS +GEG+GAEEY
Sbjct: 560 EGEFSEAREDLAALEKDYEEVGMDSTDGEGDGAEEY 595

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322788223|gb|EFZ14005.1| hypothetical protein SINV_15229 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307182561|gb|EFN69754.1| Tubulin alpha-1 chain [Camponotus floridanus] Back     alignment and taxonomy information
>gi|388523601|gb|AFK49799.1| tubulin alpha-1 chain [Cryptocercus punctulatus] Back     alignment and taxonomy information
>gi|47229230|emb|CAG03982.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|321478016|gb|EFX88974.1| hypothetical protein DAPPUDRAFT_220904 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321472551|gb|EFX83521.1| hypothetical protein DAPPUDRAFT_301837 [Daphnia pulex] Back     alignment and taxonomy information
>gi|307208702|gb|EFN85992.1| Tubulin alpha-1 chain [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|72057634|ref|XP_802011.1| PREDICTED: tubulin alpha chain-like isoform 5 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|72057626|ref|XP_780117.1| PREDICTED: tubulin alpha chain-like isoform 1 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
FB|FBgn0003884450 alphaTub84B "alpha-Tubulin at 0.633 0.448 0.857 6e-146
ZFIN|ZDB-GENE-051127-7450 zgc:123298 "zgc:123298" [Danio 0.633 0.448 0.848 3.3e-145
FB|FBgn0003885450 alphaTub84D "alpha-Tubulin at 0.633 0.448 0.848 8.8e-145
UNIPROTKB|F1N9J7450 LOC100859737 "Uncharacterized 0.633 0.448 0.857 1.3e-143
UNIPROTKB|F2Z4K0450 TUBA3E "Uncharacterized protei 0.633 0.448 0.853 1.3e-143
UNIPROTKB|F6RP72449 F6RP72 "Uncharacterized protei 0.633 0.449 0.853 1.3e-143
UNIPROTKB|F1PE21450 TUBA3C "Uncharacterized protei 0.633 0.448 0.853 1.3e-143
UNIPROTKB|J9NXT1450 LOC608051 "Uncharacterized pro 0.633 0.448 0.853 1.3e-143
UNIPROTKB|Q13748450 TUBA3C "Tubulin alpha-3C/D cha 0.633 0.448 0.853 1.3e-143
UNIPROTKB|F1RK98450 LOC100510930 "Uncharacterized 0.633 0.448 0.853 1.3e-143
FB|FBgn0003884 alphaTub84B "alpha-Tubulin at 84B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 940 (336.0 bits), Expect = 6.0e-146, Sum P(2) = 6.0e-146
 Identities = 187/218 (85%), Positives = 188/218 (86%)

Query:     5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
             GLQGFLIFH            LLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT
Sbjct:   131 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 190

Query:    65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
             THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR       
Sbjct:   191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR------- 243

Query:   125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
                      FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSV EITNA
Sbjct:   244 ---------FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 294

Query:   185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV 222
             CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA +
Sbjct:   295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
GO:0045298 "tubulin complex" evidence=NAS
GO:0005525 "GTP binding" evidence=IEA;NAS
GO:0005874 "microtubule" evidence=ISS;NAS
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA
GO:0009987 "cellular process" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0019730 "antimicrobial humoral response" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005813 "centrosome" evidence=IDA
GO:0000235 "astral microtubule" evidence=IDA
ZFIN|ZDB-GENE-051127-7 zgc:123298 "zgc:123298" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0003885 alphaTub84D "alpha-Tubulin at 84D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9J7 LOC100859737 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K0 TUBA3E "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6RP72 F6RP72 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PE21 TUBA3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXT1 LOC608051 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13748 TUBA3C "Tubulin alpha-3C/D chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK98 LOC100510930 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.84820.93410.6636yesN/A
P68367TBA4A_MACFANo assigned EC number0.85020.93100.6629N/AN/A
P68366TBA4A_HUMANNo assigned EC number0.85020.93100.6629noN/A
P68361TBA1B_CRIGRNo assigned EC number0.85880.90590.6407yesN/A
P68360TBA1B_MERUNNo assigned EC number0.85880.90590.6407N/AN/A
P68363TBA1B_HUMANNo assigned EC number0.85880.90590.6407yesN/A
P68362TBA1A_CRIGRNo assigned EC number0.86190.90590.6407yesN/A
P18258TBA1_PARLINo assigned EC number0.85840.90280.6371N/AN/A
P05213TBA1B_MOUSENo assigned EC number0.85880.90590.6407yesN/A
P68369TBA1A_MOUSENo assigned EC number0.86190.90590.6407yesN/A
P68368TBA4A_MOUSENo assigned EC number0.85020.93100.6629noN/A
Q71U36TBA1A_HUMANNo assigned EC number0.86190.90590.6407yesN/A
Q6P9V9TBA1B_RATNo assigned EC number0.85880.90590.6407yesN/A
P09645TBA8_CHICKNo assigned EC number0.85710.93410.9197noN/A
Q2HJ86TBA1D_BOVINNo assigned EC number0.86800.90590.6393yesN/A
P52273TBA_BOMMONo assigned EC number0.87690.90280.64N/AN/A
P02552TBA1_CHICKNo assigned EC number0.85580.90590.7014noN/A
P02550TBA1A_PIGNo assigned EC number0.85270.90590.6407yesN/A
P41383TBA2_PATVUNo assigned EC number0.86190.90590.6393N/AN/A
P36220TBA_TORMANo assigned EC number0.85880.90590.6407N/AN/A
Q28IX8TBA_XENTRNo assigned EC number0.85530.90280.6414yesN/A
P08537TBA_XENLANo assigned EC number0.84520.93410.6636N/AN/A
A5A6J1TBA1A_PANTRNo assigned EC number0.86190.90590.6407yesN/A
Q94572TBA3_HOMAMNo assigned EC number0.85360.91220.6452N/AN/A
Q32KN8TBA3_BOVINNo assigned EC number0.86800.90590.6422yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.84430.93100.6614yesN/A
Q13748TBA3C_HUMANNo assigned EC number0.87110.90590.6422yesN/A
Q5XIF6TBA4A_RATNo assigned EC number0.85020.93100.6629noN/A
Q2XVP4TBA1B_PIGNo assigned EC number0.85880.90590.6407yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.84520.93410.6636yesN/A
P68373TBA1C_MOUSENo assigned EC number0.84820.93410.6636yesN/A
P68370TBA1A_RATNo assigned EC number0.86190.90590.6407yesN/A
Q4R538TBA1B_MACFANo assigned EC number0.85880.90590.6407N/AN/A
Q68FR8TBA3_RATNo assigned EC number0.87110.90590.6422yesN/A
P05214TBA3_MOUSENo assigned EC number0.87110.90590.6422yesN/A
P06603TBA1_DROMENo assigned EC number0.880.90280.64yesN/A
Q6PEY2TBA3E_HUMANNo assigned EC number0.85880.90590.6422yesN/A
Q9NY65TBA8_HUMANNo assigned EC number0.85230.90280.6414noN/A
P06604TBA2_DROMENo assigned EC number0.83920.93410.6636yesN/A
P06605TBA3_DROMENo assigned EC number0.87380.90280.64yesN/A
Q8T6A5TBA1_APLCANo assigned EC number0.86190.90590.6407N/AN/A
P81947TBA1B_BOVINNo assigned EC number0.85880.90590.6407yesN/A
P81948TBA4A_BOVINNo assigned EC number0.85020.93100.6629noN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.84520.93410.6636yesN/A
Q25008TBA1_HOMAMNo assigned EC number0.84560.93730.6629N/AN/A
P18288TBAT_ONCMYNo assigned EC number0.87110.90590.6422N/AN/A
Q91060TBA_NOTVINo assigned EC number0.85530.90280.64N/AN/A
Q8WQ47TBA_LEPDSNo assigned EC number0.84220.93730.6644N/AN/A
P30436TBA_ONCKENo assigned EC number0.85580.90590.6422N/AN/A
Q5R1W4TBA1B_PANTRNo assigned EC number0.85580.90590.6407yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-170
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-119
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 7e-95
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 3e-92
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 3e-84
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 6e-82
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 2e-61
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-58
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 2e-52
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 5e-51
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 8e-42
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 7e-39
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 3e-32
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 4e-29
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 2e-17
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  634 bits (1638), Expect = 0.0
 Identities = 265/321 (82%), Positives = 277/321 (86%), Gaps = 37/321 (11%)

Query: 5   GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
           GLQGFLIFHSFGGGTGSGF SLL+ERLSVDYGKKSKLEF +YP+PQVSTAVVEPYNS+LT
Sbjct: 130 GLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLT 189

Query: 65  THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
           TH+ LEHSDC+FMVDNEAIYDICRRNLDIERPTYTNLNRLI                 Q+
Sbjct: 190 THSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLI----------------AQV 233

Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
           VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLV+YAP+ISAEKAYHEQLSV EITNA
Sbjct: 234 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNA 293

Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV---------------------G 223
           CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA V                     G
Sbjct: 294 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVG 353

Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
           INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAW+RLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 354 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 413

Query: 284 EGEFSEAREDLAALEKDYEEV 304
           EGEFSEAREDLAALEKDYEEV
Sbjct: 414 EGEFSEAREDLAALEKDYEEV 434

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1374|consensus448 100.0
KOG1375|consensus369 100.0
KOG1376|consensus407 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.93
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.89
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.89
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.86
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.85
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.79
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.78
PRK13018378 cell division protein FtsZ; Provisional 99.76
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.7
PRK09330384 cell division protein FtsZ; Validated 99.67
PF14881180 Tubulin_3: Tubulin domain 99.33
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 98.93
KOG2530|consensus483 98.88
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 96.92
PF13809345 Tubulin_2: Tubulin like 95.8
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.4e-86  Score=603.94  Aligned_cols=296  Identities=63%  Similarity=1.062  Sum_probs=278.1

Q ss_pred             CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082          2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE   81 (319)
Q Consensus         2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~   81 (319)
                      .||+||||+++||+|||||||+|+.|+|+|++||||+.+.+++|+|.++.+++||||||++|++++|++++|+++++||+
T Consensus       126 ~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNe  205 (443)
T COG5023         126 GCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNE  205 (443)
T ss_pred             cCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082         82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT  161 (319)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~  161 (319)
                      +|+++|.+.+++++|+|.++|++||+.+++                +|.++||||++|.||+++.+||||+|++||+.++
T Consensus       206 al~di~~~~L~i~~P~y~~lN~LIs~VmSs----------------vTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~s  269 (443)
T COG5023         206 ALYDICRRNLRIQNPSYDDLNQLISTVMSS----------------VTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVS  269 (443)
T ss_pred             HHHHHHHHhcCCCCCChHHHHHHHHHHHHh----------------hhheeecCccccchHHHHHhcCCCCCcccccccc
Confidence            999999999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082        162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP--------------------  221 (319)
Q Consensus       162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~--------------------  221 (319)
                      |+|+++..+..+++.++.+++++||+++|||++|+|+.|+|++++.++||++.+++++++                    
T Consensus       270 ytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~  349 (443)
T COG5023         270 YTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGF  349 (443)
T ss_pred             cCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcce
Confidence            999999998999999999999999999999999999999999999999999999988776                    


Q ss_pred             -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082        222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD  300 (319)
Q Consensus       222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~  300 (319)
                       +++|..||     ....+++.++++|+|+|+|.+.|+++.++|++||+||||||||.++||||+||.||++.|.+|+++
T Consensus       350 ~vai~~~~P-----~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~e  424 (443)
T COG5023         350 KVAICKRPP-----SEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEE  424 (443)
T ss_pred             eeeeeccCC-----cccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence             22222222     223457889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCCCCCC
Q psy11082        301 YEEVGMDSVEGEGEGAEE  318 (319)
Q Consensus       301 Y~~~~~~~~~~~~~~~~~  318 (319)
                      |++++++..+++++..||
T Consensus       425 Y~~~~~~s~~~~~~~~~~  442 (443)
T COG5023         425 YEAAEQDSYLDDEEDEEE  442 (443)
T ss_pred             HHHhccccccchhhhhcc
Confidence            999999988777653333

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-156
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-155
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-154
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-154
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-153
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-153
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-153
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-153
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-152
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 1e-152
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 1e-152
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-122
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-54
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-53
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 3e-53
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-53
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 4e-53
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 4e-53
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 4e-53
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 6e-53
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 6e-53
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 7e-53
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 1e-44
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 9e-43
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-25
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-25
2e4h_B36 Solution Structure Of Cytoskeletal Protein In Compl 4e-06
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  548 bits (1413), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/334 (81%), Positives = 278/334 (83%), Gaps = 37/334 (11%)
Query: 5   GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
           GLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65  THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
           THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI            
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
               TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
           CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA                      VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
           INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 317
           EGEFSEARED+AALEKDYEEVG+DS E E EG E
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE 448
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 36 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-179
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-179
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 1e-178
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-178
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  523 bits (1349), Expect = 0.0
 Identities = 289/338 (85%), Positives = 294/338 (86%), Gaps = 38/338 (11%)

Query: 4   MGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 63
            GLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSIL
Sbjct: 130 TGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSIL 189

Query: 64  TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQ 123
           TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI                 Q
Sbjct: 190 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI----------------SQ 233

Query: 124 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITN 183
           IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITN
Sbjct: 234 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITN 293

Query: 184 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA-----------------P----V 222
           ACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA                 P    V
Sbjct: 294 ACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKV 353

Query: 223 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 282
           GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM
Sbjct: 354 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 413

Query: 283 EEGEFSEAREDLAALEKDYEEVGMDSVEGEGEG-AEEY 319
           EEGEFSEARED+AALEKDYEEVG+DSVEGEGE   EEY
Sbjct: 414 EEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.97
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.96
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.96
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.96
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.96
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.96
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.96
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.92
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.9
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.89
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.1
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 98.19
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 97.24
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=9.1e-83  Score=617.95  Aligned_cols=302  Identities=95%  Similarity=1.457  Sum_probs=281.1

Q ss_pred             CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082          2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE   81 (319)
Q Consensus         2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~   81 (319)
                      +||++|||+++||+|||||||+|++|+|+|+++||++.+++++|+|+++.++++++|||++|++++|.+++|+++++||+
T Consensus       128 ~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNe  207 (451)
T 3ryc_A          128 QCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE  207 (451)
T ss_dssp             TCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHH
T ss_pred             cCCCccceEEEeccCCCCCccHHHHHHHHHHHhcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccH
Confidence            69999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082         82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT  161 (319)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~  161 (319)
                      +|+++|.+.+++.+|+|.++|++||+.+++                +|+++||+|++|.|+.++.+||||||++||++++
T Consensus       208 aL~~ic~~~l~i~~p~y~~lN~lIa~~~s~----------------iT~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s  271 (451)
T 3ryc_A          208 AIYDICRRNLDIERPTYTNLNRLISQIVSS----------------ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT  271 (451)
T ss_dssp             HHHHHHHHHHCCSSCCHHHHHHHHHHHHHH----------------HHHHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEE
T ss_pred             HHHHHHHHhccCCCCCchhhHHHHHhcccc----------------cccccccCcccccCHHHHhhccCCCCceeeeccc
Confidence            999999999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082        162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP--------------------  221 (319)
Q Consensus       162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~--------------------  221 (319)
                      ++|+++..+..++.+++.+|++++|++.|||++|+|++|+|+|+++++||++++++++++                    
T Consensus       272 ~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~  351 (451)
T 3ryc_A          272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF  351 (451)
T ss_dssp             EECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEE
T ss_pred             cCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCce
Confidence            999999888889999999999999999999999999999999999999999988877654                    


Q ss_pred             -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082        222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD  300 (319)
Q Consensus       222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~  300 (319)
                       +++|+.||..+|++.+.++++++++++|+|+|.+.|+++.++|++||+||||||||++|||||+||.||+++|.+|+++
T Consensus       352 kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~e  431 (451)
T 3ryc_A          352 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD  431 (451)
T ss_dssp             EEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHhhcceeHhhhcCCccchhhHHHHHHHHHHHHHH
Confidence             5678889999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCC-CCCCCCCC
Q psy11082        301 YEEVGMDSVEG-EGEGAEEY  319 (319)
Q Consensus       301 Y~~~~~~~~~~-~~~~~~~~  319 (319)
                      |++++.+..|+ +++++|||
T Consensus       432 Y~~~~~~~~~~~~~~~~~~~  451 (451)
T 3ryc_A          432 YEEVGVDSVEGEGEEEGEEY  451 (451)
T ss_dssp             HHHHHCC-------------
T ss_pred             HHHHhcCCCcccccccccCC
Confidence            99999988654 46667764
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 2e-98
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 5e-81
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 6e-75
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-60
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 3e-60
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 9e-60
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 0.003
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  286 bits (732), Expect = 2e-98
 Identities = 166/195 (85%), Positives = 170/195 (87%), Gaps = 21/195 (10%)

Query: 136 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKC 195
           GALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNACFEPANQMVKC
Sbjct: 1   GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60

Query: 196 DPRHGKYMACCMLYRGDVVPKDVNAP---------------------VGINYQPPTVVPG 234
           DPRHGKYMACC+LYRGDVVPKDVNA                      VGINY+PPTVVPG
Sbjct: 61  DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120

Query: 235 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 294
           GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180

Query: 295 AALEKDYEEVGMDSV 309
           AALEKDYEEVG+DSV
Sbjct: 181 AALEKDYEEVGVDSV 195
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.17
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.11
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.09
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.07
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7e-44  Score=310.50  Aligned_cols=173  Identities=95%  Similarity=1.502  Sum_probs=157.5

Q ss_pred             CccchhhhhhhhcCcCCCccccCccccccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCc
Q psy11082        136 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP  215 (319)
Q Consensus       136 g~~n~dl~~l~~nLvP~P~l~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~  215 (319)
                      |++|.||++|.+||||||++||++++++|+++..+..++..+..++++++|++++++++++++.|+|+++++++||++.+
T Consensus         1 G~lN~Dl~kl~tNLVPfPrlhFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~~~~~~~~~~~yls~~~~~RG~~~~   80 (195)
T d1tuba2           1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP   80 (195)
T ss_dssp             CSSCCCHHHHHHHHCSSSSCCCCBCCBCCCCCTTCCCSSSCCTTHHHHHHHSTTTCSSCCCTTSSCEEEEEEEEESSCCH
T ss_pred             CCCcchHHHhhccCCCCCcccchhccccccCchhhhhhhcCcHHHHHHHHhchhhhhcccCCCccHHHHHHHHHhCCCCc
Confidence            67999999999999999999999999999998887788889999999999999999999999999999999999999877


Q ss_pred             cCCCcc---------------------ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhcccee
Q psy11082        216 KDVNAP---------------------VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV  274 (319)
Q Consensus       216 ~~i~~~---------------------~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAfl  274 (319)
                      +++++.                     +++|..||..+|.+.+.+.+.++++++|+|+|...|++++++|++||+|||||
T Consensus        81 ~ei~~~i~~ik~~~~~~fv~W~~~~~kv~~~~~~p~~~~~~~l~~~~~s~~~l~N~TsI~~~f~~i~~~Fdkl~~rkAfl  160 (195)
T d1tuba2          81 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV  160 (195)
T ss_dssp             HHHHHHHHHHTTSSTTCCCSSCSSCCEEEEESSCCCCCTGGGCCCCCCCCBEEEEETTHHHHHHHHHHHHHHHTTTTCCT
T ss_pred             chHHHHHHHHHHhCCcchhhhhccceeeeecCCCCccCCCcchhhhhhhhhHhcCChhHHHHHHHHHHHHHHHHhhchHH
Confidence            665543                     44556666666665666778899999999999999999999999999999999


Q ss_pred             eecccCCCCcchHHHHHHHHHHHHHHHHHhccCC
Q psy11082        275 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS  308 (319)
Q Consensus       275 H~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~  308 (319)
                      |||+++||||+||.||+++|++|+++|++++.++
T Consensus       161 h~Y~~egmee~eF~EA~e~l~~li~eY~~~~~~~  194 (195)
T d1tuba2         161 HWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS  194 (195)
T ss_dssp             TTGGGGSCCSSSSHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999998764
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure