Psyllid ID: psy11100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR
Secondary Structure (PSIPRED)
cEEEEEEcEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEcEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEEEEEccccccccccccccccEEEEcccccccEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
MFIYLSKkiaipnntkvnCLAWHqnqgwiavggddglLKVLKldtgkestGQVAAANVNLAMNqslqghsgkVRAIIWNEQyekltssdetGLIIVWMLYKcndddewkr
Flexible Loop (DISEMBL)
MFIYLSkkiaipnnTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEkltssdetglIIVWMLYkcndddewkr
Low Complexity Region (SEG)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAvggddgllkvlkldtgkESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR
Disordered region (IsUnstruct)
*FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN*******
Disordered Region (DISOPRED)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT*************NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN*******
Disordered Region (DISEMBL)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR
Disordered Region (DISPRO)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK***GQVA**NVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9P2L0	1181	WD repeat-containing prot	yes	N/A	0.918	0.085	0.637	6e-33
Q8BND3	1181	WD repeat-containing prot	yes	N/A	0.918	0.085	0.627	9e-33
A6N6J5	1170	WD repeat-containing prot	yes	N/A	0.918	0.086	0.627	1e-32
Q9JIL5	1547	Tubby-related protein 4 O	no	N/A	0.809	0.057	0.313	2e-05
Q9NRJ4	1543	Tubby-related protein 4 O	no	N/A	0.809	0.057	0.313	2e-05

>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 83/102 (81%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MF YLSKKI+IPNN K+ C++W++ QG+IA GG+DGLLKVLKL+T  +    +  AA  N
Sbjct: 1   MFFYLSKKISIPNNVKLQCVSWNKEQGFIACGGEDGLLKVLKLETQTDDAKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SDE GLIIVWMLYK
Sbjct: 61  LSMNQTLEGHSGSVQVVTWNEQYQKLTTSDENGLIIVWMLYK 102

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.
Homo sapiens (taxid: 9606)

>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVN 59
           MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T   +S  +  AA  N
Sbjct: 1   MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

May promote CASP3 activation and TNF-stimulated apoptosis (By similarity). Required for ciliogenesis.

Mus musculus (taxid: 10090)

>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVN 59
           MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T   +S  +  AA  N
Sbjct: 1   MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9JIL5|TULP4_MOUSE Tubby-related protein 4 OS=Mus musculus GN=Tulp4 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 5   LSKKIAIPNNTKVN--CLAWHQNQGWIAVGGDDGLLKVLKLDTG---KESTGQVAAANVN 59
           LS K  +P + K    C   +  +GW+A G   G++ V    +      ST Q       
Sbjct: 20  LSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQ------- 72

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             +N +L+GH+ +V  + WNE Y+KL + D  G I VW+ Y+
Sbjct: 73  -RINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYE 113

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 5   LSKKIAIPNNTKVN--CLAWHQNQGWIAVGGDDGLLKVLKLDTG---KESTGQVAAANVN 59
           LS K  +P + K    C   +  +GW+A G   G++ V    +      ST Q       
Sbjct: 20  LSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQ------- 72

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             +N +L+GH+ +V  + WNE Y+KL + D  G I VW+ Y+
Sbjct: 73  -RINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYE 113

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
242005643	1140	WD-repeat protein, putative [Pediculus h	0.918	0.088	0.702	1e-35
291225001	1176	PREDICTED: WD repeat domain 35-like [Sac	0.918	0.085	0.660	7e-33
156398925	1173	predicted protein [Nematostella vectensi	0.918	0.086	0.650	9e-33
47214245	1222	unnamed protein product [Tetraodon nigro	0.918	0.082	0.647	3e-32
334313579	1042	PREDICTED: WD repeat-containing protein	0.918	0.096	0.647	4e-32
345491192	1120	PREDICTED: WD repeat-containing protein	0.918	0.090	0.577	5e-32
395828621	1169	PREDICTED: WD repeat-containing protein	0.918	0.086	0.656	5e-32
426223182	1181	PREDICTED: WD repeat-containing protein	0.918	0.085	0.637	7e-32
328705678	1163	PREDICTED: WD repeat-containing protein	0.918	0.086	0.650	8e-32
426223180	1170	PREDICTED: WD repeat-containing protein	0.918	0.086	0.637	8e-32

>gi|242005643|ref|XP_002423673.1| WD-repeat protein, putative [Pediculus humanus corporis] gi|212506842|gb|EEB10935.1| WD-repeat protein, putative [Pediculus humanus corporis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 89/101 (88%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNL 60
           MFIYLSKKIAIPNNTK+NCLAW++ QG+IAVGG DGLLK+LKLD+G ++  +  AA  NL
Sbjct: 1   MFIYLSKKIAIPNNTKLNCLAWNKEQGYIAVGGSDGLLKILKLDSGNDNKMKGLAAPSNL 60

Query: 61  AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           +MNQ+L+GHSG+V+ I+WNE Y+KLT+SD+ GLIIVWMLYK
Sbjct: 61  SMNQTLEGHSGEVQVIVWNEIYQKLTTSDQYGLIIVWMLYK 101

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291225001|ref|XP_002732486.1| PREDICTED: WD repeat domain 35-like [Saccoglossus kowalevskii]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 85/103 (82%), Gaps = 2/103 (1%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA--AANV 58
           MFIYLSKKIAIPNNTK+ C++W++ QG+IA GG+DGLLKVLKL+T +    +V   AA  
Sbjct: 1   MFIYLSKKIAIPNNTKLKCVSWNREQGYIACGGEDGLLKVLKLETQQSKDAKVRGLAAPS 60

Query: 59  NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           NL+MNQSL+GHSG V+ + WNE Y+KLT+SD+ GLIIVWMLYK
Sbjct: 61  NLSMNQSLEGHSGAVQVVTWNEHYQKLTTSDQYGLIIVWMLYK 103

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156398925|ref|XP_001638438.1| predicted protein [Nematostella vectensis] gi|156225558|gb|EDO46375.1| predicted protein [Nematostella vectensis]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 88/103 (85%), Gaps = 2/103 (1%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT--GKESTGQVAAANV 58
           MFIYLSKKIAIPNNT++ CLAW++ QG+IA GG++GLLKVLKL+T  GK+S  +  AA  
Sbjct: 1   MFIYLSKKIAIPNNTRLKCLAWNREQGYIACGGEEGLLKVLKLETQQGKDSKLKGLAAPS 60

Query: 59  NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           NL+MNQ+L+GH+G V+ + WNEQ++KLT+SD+ GLIIVW+LYK
Sbjct: 61  NLSMNQTLEGHTGAVQVVTWNEQFQKLTTSDQYGLIIVWILYK 103

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|47214245|emb|CAG12464.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/102 (64%), Positives = 83/102 (81%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MFIYLSKKIAIPNN  + C++W ++QG+I+ GGDDGLL+VLKL+T  +    +  AA  N
Sbjct: 1   MFIYLSKKIAIPNNIHLKCVSWSRDQGFISCGGDDGLLRVLKLETQTDDARLKGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ I WNEQYEKLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQTLEGHSGSVQVITWNEQYEKLTTSDQNGLIIVWMLYK 102

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334313579|ref|XP_001370354.2| PREDICTED: WD repeat-containing protein 35-like [Monodelphis domestica]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MFIYLSKKIAIPNN K+ C++W+++QG+IA GG+DGLLKVLKL+T  +    +  AA  N
Sbjct: 1   MFIYLSKKIAIPNNVKLKCISWNKDQGFIACGGEDGLLKVLKLETQTDDAKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQTLEGHSGSVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345491192|ref|XP_001607766.2| PREDICTED: WD repeat-containing protein 35-like [Nasonia vitripennis]

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/109 (57%), Positives = 85/109 (77%), Gaps = 8/109 (7%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQV------- 53
           MF+YLSKKIAIPNN  +NC+AW+Q QG+IAVGG+DGLLKV++ D+G  +T          
Sbjct: 1   MFVYLSKKIAIPNNVHLNCIAWNQKQGYIAVGGEDGLLKVIRADSGASTTDNTNNSGKTR 60

Query: 54  -AAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
              A+ NL+MNQ+L+GH+G V+ + WNE+++KLTSSD+ G+IIVWMLYK
Sbjct: 61  SMTASSNLSMNQTLEGHNGHVQVVTWNEEHQKLTSSDQNGVIIVWMLYK 109

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395828621|ref|XP_003787468.1| PREDICTED: WD repeat-containing protein 35 [Otolemur garnettii]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MF YLSKKIAIPNN K+ C++W+++QG+IA GG+DGLLKVLKL+T  + T  +  AA  N
Sbjct: 1   MFFYLSKKIAIPNNVKLKCVSWNKDQGFIACGGEDGLLKVLKLETQTDDTKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLTSSD+ GLIIVWMLYK
Sbjct: 61  LSMNQTLEGHSGCVQVVTWNEQYQKLTSSDQNGLIIVWMLYK 102

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426223182|ref|XP_004005756.1| PREDICTED: WD repeat-containing protein 35 isoform 2 [Ovis aries]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MF YLSKK+A+PNN K+ C++W+++QG+IA GGDDGLLKVLKL+T  + T  +  AA  N
Sbjct: 1   MFFYLSKKVAMPNNVKLKCVSWNKDQGFIACGGDDGLLKVLKLETQTDDTKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQALEGHSGSVQIVTWNEQYQKLTTSDQNGLIIVWMLYK 102

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328705678|ref|XP_001948891.2| PREDICTED: WD repeat-containing protein 35-like [Acyrthosiphon pisum]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 83/103 (80%), Gaps = 2/103 (1%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA--AANV 58
           MF+YLSKKIAIPNNTK+NCL W+ +Q  IAVGGDDGLLKVLK+D+G  + G+    A   
Sbjct: 1   MFLYLSKKIAIPNNTKINCLEWNSSQDCIAVGGDDGLLKVLKIDSGTPADGKPRGLAGQA 60

Query: 59  NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           NL++N++L+GHSG V  I+WNE++ KLTSSDE GLIIVW LYK
Sbjct: 61  NLSINKTLEGHSGNVLTIVWNEKHNKLTSSDENGLIIVWTLYK 103

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|426223180|ref|XP_004005755.1| PREDICTED: WD repeat-containing protein 35 isoform 1 [Ovis aries]

 Score =  140 bits (353), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
           MF YLSKK+A+PNN K+ C++W+++QG+IA GGDDGLLKVLKL+T  + T  +  AA  N
Sbjct: 1   MFFYLSKKVAMPNNVKLKCVSWNKDQGFIACGGDDGLLKVLKLETQTDDTKLRGLAAPSN 60

Query: 60  LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
           L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61  LSMNQALEGHSGSVQIVTWNEQYQKLTTSDQNGLIIVWMLYK 102

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
RGD|1564116	1170	Wdr35 "WD repeat domain 35" [R	0.918	0.086	0.519	7.8e-23
MGI|MGI:1921932	1181	Wdr35 "WD repeat domain 35" [M	0.918	0.085	0.519	7.9e-23
ZFIN|ZDB-GENE-060810-148	1203	wdr35 "WD repeat domain 35" [D	0.918	0.083	0.529	8.1e-23
UNIPROTKB|Q9P2L0	1181	WDR35 "WD repeat-containing pr	0.918	0.085	0.519	1.3e-22
UNIPROTKB|F1SCU2	1186	WDR35 "Uncharacterized protein	0.981	0.091	0.467	1.2e-21
FB|FBgn0035264	1205	Oseg4 "Oseg4" [Drosophila mela	0.909	0.082	0.490	5.3e-21
UNIPROTKB|E1BWD7	1180	WDR35 "Uncharacterized protein	0.918	0.085	0.471	2.2e-20
WB|WBGene00016935	1199	ifta-1 [Caenorhabditis elegans	0.936	0.085	0.268	1.8e-07
FB|FBgn0039530	1401	Tusp "Tusp" [Drosophila melano	0.381	0.029	0.452	0.0001
WB|WBGene00022139	869	tub-2 [Caenorhabditis elegans	0.381	0.048	0.391	0.00032

RGD|1564116 Wdr35 "WD repeat domain 35" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/102 (51%), Positives = 71/102 (69%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA-XXXXXXXXXXXXXXXXXESTGQVAAANVN 59
             MF YLSKKIA+PNN K+ C++W+++QG+IA                  +S  +  AA  N
Sbjct:     1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct:    61 LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0030991 "intraflagellar transport particle A" evidence=ISO;ISS

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

MGI|MGI:1921932 Wdr35 "WD repeat domain 35" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 7.9e-23, P = 7.9e-23
 Identities = 53/102 (51%), Positives = 71/102 (69%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA-XXXXXXXXXXXXXXXXXESTGQVAAANVN 59
             MF YLSKKIA+PNN K+ C++W+++QG+IA                  +S  +  AA  N
Sbjct:     1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct:    61 LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

ZFIN|ZDB-GENE-060810-148 wdr35 "WD repeat domain 35" [Danio rerio (taxid:7955)]

 Score = 277 (102.6 bits), Expect = 8.1e-23, P = 8.1e-23
 Identities = 54/102 (52%), Positives = 71/102 (69%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAXXXXXXXXXXXXXXXXXESTG-QVAAANVN 59
             MFIYLSKKIAIPNNT + C++W+++QG+IA                 +    +  AA  N
Sbjct:     1 MFIYLSKKIAIPNNTVLKCVSWNKDQGFIACGGEDGLLKVLKLETYTDDAKLKGLAAPSN 60

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct:    61 LSMNQTLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9P2L0 WDR35 "WD repeat-containing protein 35" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/102 (51%), Positives = 69/102 (67%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAXXXXXXXXXXXXXXXXXESTG-QVAAANVN 59
             MF YLSKKI+IPNN K+ C++W++ QG+IA                 +    +  AA  N
Sbjct:     1 MFFYLSKKISIPNNVKLQCVSWNKEQGFIACGGEDGLLKVLKLETQTDDAKLRGLAAPSN 60

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             L+MNQ+L+GHSG V+ + WNEQY+KLT+SDE GLIIVWMLYK
Sbjct:    61 LSMNQTLEGHSGSVQVVTWNEQYQKLTTSDENGLIIVWMLYK 102

GO:0030991 "intraflagellar transport particle A" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

UNIPROTKB|F1SCU2 WDR35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 51/109 (46%), Positives = 70/109 (64%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAXXXXXXXXXXXXXXXXXESTG-QVAAANVN 59
             MF YLSKKI+IPNN K+ C++W+++QG+IA                 +    +  AA  N
Sbjct:     1 MFFYLSKKISIPNNVKLKCISWNKDQGFIACGGEDGLLKVLKLETQTDDAKLRGLAAPSN 60

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
             L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWML +      W
Sbjct:    61 LSMNQTLEGHSGSVQVVTWNEQYQKLTTSDQNGLIIVWMLCRVVKTGSW 109

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

FB|FBgn0035264 Oseg4 "Oseg4" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 51/104 (49%), Positives = 68/104 (65%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAXXXXXXXXXXXXXXXXX---ESTGQVAAAN 57
             MF+YLSKKIAIPNN K+NC+AW++ +G+IA                    +S G +AA +
Sbjct:     1 MFVYLSKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLKLDQATPNGQSKGGLAAVS 60

Query:    58 VNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
              NL+MNQ+L GH   VR + WN+  +KLTSSD  G+I+VWMLYK
Sbjct:    61 -NLSMNQTLDGHKESVRVVTWNDAQQKLTSSDTDGVIMVWMLYK 103

GO:0003674 "molecular_function" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1BWD7 WDR35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 49/104 (47%), Positives = 69/104 (66%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA---XXXXXXXXXXXXXXXXXESTGQVAAAN 57
             MFIYL KKIAIP N ++ C++W++++G+IA                    E+  +  AA 
Sbjct:     1 MFIYLCKKIAIPGNVRLRCISWNKDEGFIACGGEDGLLKVLKLETQSVLDEAKIKGLAAP 60

Query:    58 VNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
              NL+MNQ+L+GHSG V+ + WNEQY KLT+SD+ GLIIVW++YK
Sbjct:    61 SNLSMNQTLEGHSGSVQVVTWNEQYHKLTTSDQNGLIIVWIIYK 104

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

WB|WBGene00016935 ifta-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 133 (51.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/108 (26%), Positives = 52/108 (48%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAXXXXXXXXXXXXXXXXXESTGQVAAANVNL 60
             M ++    + +P + +++   W+ N  +IA                     +   A   L
Sbjct:     1 MSVFRKFNLGLPEHGQLHFAEWNYNSNYIACGGALGKLKVVKIGTDATDLNKSPNA-ATL 59

Query:    61 AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
              +NQ+L+GH+  V    WNE  +KLT+SD +GLIIVW ++    +++W
Sbjct:    60 VVNQALEGHNATVMNATWNENNQKLTTSDTSGLIIVWGMF----NEQW 103

GO:0035085 "cilium axoneme" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0042073 "intraflagellar transport" evidence=IDA

GO:0006935 "chemotaxis" evidence=IMP

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

FB|FBgn0039530 Tusp "Tusp" [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query:    60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
             L  N +L+GH   V  + WNE Y+KL S D +G+I VW+ Y+
Sbjct:    44 LRTNYNLRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYE 85

GO:0035556 "intracellular signal transduction" evidence=IEA

WB|WBGene00022139 tub-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 101 (40.6 bits), Expect = 0.00032, P = 0.00032
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query:    63 NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
             N +L+GH   +R + WN+   KL S D +G+I VW+     +DD W
Sbjct:    62 NFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWV----RNDDRW 103

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0042597 "periplasmic space" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P2L0	WDR35_HUMAN	No assigned EC number	0.6372	0.9181	0.0855	yes	N/A
A6N6J5	WDR35_RAT	No assigned EC number	0.6274	0.9181	0.0863	yes	N/A
Q8BND3	WDR35_MOUSE	No assigned EC number	0.6274	0.9181	0.0855	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           VN +A+  +   +     DG +K+  L TGK                 +L+GH   V ++
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL--------------GTLRGHENGVNSV 225

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            ++     L S  E G I VW
Sbjct: 226 AFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           V C+A+  +   +A G  DG +KV  L+TG+                 +L+GH+G VR 
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------TLKGHTGPVRD 56

Query: 76 IIWNEQYEKLTSSDETGLIIVW 97
          +  +     L S      I +W
Sbjct: 57 VAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           VN +A+  +   +A G +DG ++V  L TG+                Q+L GH+  V ++
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV--------------QTLSGHTNSVTSL 267

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            W+   ++L S    G I +W
Sbjct: 268 AWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V+ +A+  +   ++    D  +KV  ++TGK                 +L+GH+  V ++
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--------------TTLRGHTDWVNSV 141

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            ++     + SS + G I +W
Sbjct: 142 AFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           VN +A+  +  ++A    DG +K+  L TGK                 +L GH+G+V ++
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--------------VATLTGHTGEVNSV 183

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            ++   EKL SS   G I +W
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 7   KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL 66
            +  +  ++     ++  +   +A G  DG +++  L +                  ++L
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-------------RTL 280

Query: 67  QGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
            GHS  V ++ ++   + L S    G + +W
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 8e-04
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
          V  +A+  +   +A G DDG ++V
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  +A   +  ++A G  D  +++  L+TG+                ++L GH+  V ++
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECV--------------RTLTGHTSYVSSV 99

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            ++     L+SS     I VW
Sbjct: 100 AFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
          V  +A+  +  ++A G DDG +K+
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKL 38

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG0271|consensus	480		99.81
KOG0263|consensus	707		99.77
KOG0272|consensus	459		99.76
KOG0263|consensus	707		99.72
KOG0266|consensus	456		99.67
KOG0266|consensus	456		99.67
KOG0271|consensus	480		99.66
KOG0291|consensus	893		99.65
KOG0265|consensus	338		99.65
KOG0272|consensus	459		99.65
PTZ00421	493	coronin; Provisional	99.63
PTZ00421	493	coronin; Provisional	99.59
KOG0295|consensus	406		99.57
KOG0279|consensus	315		99.57
KOG0318|consensus	603		99.57
KOG0275|consensus	508		99.57
KOG0645|consensus	312		99.55
KOG1273|consensus	405		99.54
KOG0285|consensus	460		99.54
KOG0319|consensus	775		99.54
KOG0286|consensus	343		99.53
KOG0315|consensus	311		99.53
KOG0316|consensus	307		99.53
KOG0289|consensus	506		99.53
KOG0284|consensus	464		99.53
PTZ00420	568	coronin; Provisional	99.53
KOG0264|consensus	422		99.52
PTZ00420	568	coronin; Provisional	99.51
KOG0315|consensus	311		99.51
KOG0279|consensus	315		99.5
KOG0273|consensus	524		99.49
KOG0282|consensus	503		99.48
KOG0275|consensus	508		99.47
KOG2041|consensus	1189		99.47
KOG0285|consensus	460		99.47
KOG0319|consensus	775		99.46
KOG0283|consensus	712		99.45
KOG0292|consensus	1202		99.44
KOG0645|consensus	312		99.44
KOG0286|consensus	343		99.44
KOG0640|consensus	430		99.44
KOG0973|consensus	942		99.44
KOG0318|consensus	603		99.43
KOG0276|consensus	794		99.43
KOG1407|consensus	313		99.43
KOG0284|consensus	464		99.41
KOG0302|consensus	440		99.41
KOG1034|consensus	385		99.41
KOG0273|consensus	524		99.41
KOG0293|consensus	519		99.41
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.41
KOG0296|consensus	399		99.4
KOG0264|consensus	422		99.37
KOG2394|consensus	636		99.36
KOG1445|consensus	1012		99.36
KOG0643|consensus	327		99.35
KOG0282|consensus	503		99.35
KOG0265|consensus	338		99.35
KOG1009|consensus	434		99.34
KOG0647|consensus	347		99.34
KOG0291|consensus	893		99.34
KOG0302|consensus	440		99.34
KOG0772|consensus	641		99.33
KOG0316|consensus	307		99.32
KOG0303|consensus	472		99.32
KOG0305|consensus	484		99.31
KOG0640|consensus	430		99.31
PLN00181	793	protein SPA1-RELATED; Provisional	99.31
KOG0310|consensus	487		99.31
KOG4283|consensus	397		99.31
KOG0295|consensus	406		99.31
KOG0647|consensus	347		99.31
KOG0269|consensus	839		99.31
KOG0973|consensus	942		99.3
KOG0639|consensus	705		99.29
KOG0292|consensus	1202		99.29
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.28
KOG0294|consensus	362		99.28
KOG0303|consensus	472		99.27
KOG0296|consensus	399		99.26
KOG1446|consensus	311		99.25
KOG0267|consensus	825		99.25
KOG1274|consensus	933		99.25
KOG0276|consensus	794		99.24
PLN00181	793	protein SPA1-RELATED; Provisional	99.23
KOG0278|consensus	334		99.23
KOG0772|consensus	641		99.23
KOG1539|consensus	910		99.23
KOG0313|consensus	423		99.22
KOG0293|consensus	519		99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
KOG0277|consensus	311		99.19
KOG0277|consensus	311		99.19
KOG1446|consensus	311		99.19
KOG0646|consensus	476		99.18
KOG0283|consensus	712		99.18
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.17
KOG0771|consensus	398		99.17
KOG0281|consensus	499		99.17
KOG0308|consensus	735		99.16
KOG3914|consensus	390		99.15
KOG2111|consensus	346		99.15
KOG0267|consensus	825		99.15
KOG0274|consensus	537		99.15
KOG2096|consensus	420		99.15
KOG1539|consensus	910		99.15
KOG0299|consensus	479		99.14
KOG2110|consensus	391		99.14
KOG0269|consensus	839		99.13
KOG0306|consensus	888		99.13
KOG0281|consensus	499		99.12
KOG0646|consensus	476		99.12
KOG0288|consensus	459		99.11
KOG0310|consensus	487		99.1
KOG0643|consensus	327		99.1
KOG4283|consensus	397		99.09
KOG2110|consensus	391		99.08
KOG0313|consensus	423		99.07
KOG0274|consensus	537		99.07
KOG0642|consensus	577		99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.06
KOG0322|consensus	323		99.06
KOG1332|consensus	299		99.05
KOG1332|consensus	299		99.04
KOG0650|consensus	733		99.04
KOG0270|consensus	463		99.03
KOG1310|consensus	758		99.03
KOG0306|consensus	888		99.02
KOG0268|consensus	433		99.02
KOG0294|consensus	362		99.02
KOG2445|consensus	361		99.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.0
KOG0278|consensus	334		99.0
KOG1063|consensus	764		99.0
KOG0290|consensus	364		98.99
KOG1274|consensus	933		98.99
KOG0649|consensus	325		98.98
KOG0289|consensus	506		98.98
KOG0641|consensus	350		98.98
KOG0641|consensus	350		98.98
KOG0308|consensus	735		98.97
KOG0639|consensus	705		98.97
KOG1007|consensus	370		98.97
KOG1963|consensus	792		98.97
KOG1407|consensus	313		98.96
KOG0300|consensus	481		98.95
KOG2445|consensus	361		98.95
KOG0642|consensus	577		98.92
KOG0301|consensus	745		98.91
KOG1538|consensus	1081		98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
KOG1009|consensus	434		98.88
KOG0268|consensus	433		98.88
KOG1523|consensus	361		98.87
KOG0321|consensus	720		98.87
KOG0305|consensus	484		98.87
KOG1063|consensus	764		98.86
KOG4328|consensus	498		98.85
KOG2394|consensus	636		98.85
KOG2919|consensus	406		98.83
KOG2048|consensus	691		98.8
KOG1036|consensus	323		98.8
KOG0307|consensus	1049		98.8
KOG0288|consensus	459		98.78
KOG0290|consensus	364		98.77
KOG2106|consensus	626		98.77
KOG2048|consensus	691		98.76
KOG1408|consensus	1080		98.76
KOG0299|consensus	479		98.76
KOG0301|consensus	745		98.75
KOG1408|consensus	1080		98.75
KOG0300|consensus	481		98.74
KOG1007|consensus	370		98.73
COG2319	466	FOG: WD40 repeat [General function prediction only	98.72
KOG1445|consensus	1012		98.69
KOG1273|consensus	405		98.69
KOG0321|consensus	720		98.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.64
KOG2096|consensus	420		98.64
KOG4328|consensus	498		98.64
KOG0307|consensus	1049		98.63
KOG1524|consensus	737		98.63
KOG0644|consensus	1113		98.6
KOG1036|consensus	323		98.58
KOG1272|consensus	545		98.56
KOG2919|consensus	406		98.56
KOG4227|consensus	609		98.55
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.53
KOG1587|consensus	555		98.52
KOG0270|consensus	463		98.5
KOG3881|consensus	412		98.49
KOG0974|consensus	967		98.49
KOG2055|consensus	514		98.48
KOG2055|consensus	514		98.48
KOG4378|consensus	673		98.46
KOG2139|consensus	445		98.46
KOG1310|consensus	758		98.45
KOG0644|consensus	1113		98.43
KOG1523|consensus	361		98.42
KOG1188|consensus	376		98.42
KOG2106|consensus	626		98.4
KOG2111|consensus	346		98.38
KOG4378|consensus	673		98.37
KOG1034|consensus	385		98.35
PRK01742	429	tolB translocation protein TolB; Provisional	98.33
KOG1538|consensus	1081		98.33
PRK05137	435	tolB translocation protein TolB; Provisional	98.32
COG2319	466	FOG: WD40 repeat [General function prediction only	98.32
KOG1587|consensus	555		98.29
KOG1524|consensus	737		98.28
KOG1409|consensus	404		98.27
KOG0771|consensus	398		98.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.21
KOG0649|consensus	325		98.19
KOG1188|consensus	376		98.18
KOG2695|consensus	425		98.16
KOG0650|consensus	733		98.15
KOG4227|consensus	609		98.15
KOG1334|consensus	559		98.14
PRK02889	427	tolB translocation protein TolB; Provisional	98.14
KOG2315|consensus	566		98.13
PRK04922	433	tolB translocation protein TolB; Provisional	98.13
KOG1272|consensus	545		98.12
KOG4714|consensus	319		98.11
KOG1240|consensus	1431		98.1
PRK03629	429	tolB translocation protein TolB; Provisional	98.1
KOG2139|consensus	445		98.1
PRK00178	430	tolB translocation protein TolB; Provisional	98.08
KOG1963|consensus	792		98.08
KOG4547|consensus	541		98.05
KOG2321|consensus	703		98.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.98
KOG0280|consensus	339		97.98
KOG4640|consensus	665		97.96
KOG1645|consensus	463		97.96
PRK03629	429	tolB translocation protein TolB; Provisional	97.93
COG4946	668	Uncharacterized protein related to the periplasmic	97.91
PRK01742	429	tolB translocation protein TolB; Provisional	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.9
PRK04792	448	tolB translocation protein TolB; Provisional	97.87
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.85
KOG4547|consensus	541		97.79
KOG4190|consensus	1034		97.77
KOG1517|consensus	1387		97.75
KOG0974|consensus	967		97.75
PRK01029	428	tolB translocation protein TolB; Provisional	97.72
PRK05137	435	tolB translocation protein TolB; Provisional	97.72
PRK01029	428	tolB translocation protein TolB; Provisional	97.72
PRK11028	330	6-phosphogluconolactonase; Provisional	97.7
PRK04922	433	tolB translocation protein TolB; Provisional	97.7
KOG1064|consensus	2439		97.68
KOG2315|consensus	566		97.67
PRK11028	330	6-phosphogluconolactonase; Provisional	97.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.66
PRK02889	427	tolB translocation protein TolB; Provisional	97.66
KOG4497|consensus	447		97.59
KOG4532|consensus	344		97.59
KOG4532|consensus	344		97.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.54
KOG1334|consensus	559		97.53
PRK00178	430	tolB translocation protein TolB; Provisional	97.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.45
KOG3881|consensus	412		97.42
KOG0882|consensus	558		97.41
KOG2314|consensus	698		97.36
KOG1240|consensus	1431		97.35
PRK04792	448	tolB translocation protein TolB; Provisional	97.34
KOG1064|consensus	2439		97.33
KOG2321|consensus	703		97.32
COG4946	668	Uncharacterized protein related to the periplasmic	97.29
KOG0322|consensus	323		97.27
KOG4497|consensus	447		97.24
KOG0309|consensus	1081		97.16
KOG2079|consensus	1206		97.15
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.15
KOG2041|consensus	1189		97.14
KOG3617|consensus	1416		97.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.12
KOG1517|consensus	1387		97.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.09
KOG1354|consensus	433		97.07
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.04
KOG1275|consensus	1118		97.04
KOG4714|consensus	319		96.99
KOG3621|consensus	726		96.94
KOG2695|consensus	425		96.9
PRK04043	419	tolB translocation protein TolB; Provisional	96.86
KOG0280|consensus	339		96.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.8
KOG1832|consensus	1516		96.7
KOG1409|consensus	404		96.69
KOG4640|consensus	665		96.66
KOG1354|consensus	433		96.62
KOG3914|consensus	390		96.62
PRK04043	419	tolB translocation protein TolB; Provisional	96.6
KOG1912|consensus	1062		96.54
KOG0309|consensus	1081		96.45
KOG2066|consensus	846		96.38
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.98
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.88
KOG2079|consensus	1206		95.6
KOG1920|consensus	1265		95.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.42
KOG2314|consensus	698		95.38
KOG1912|consensus	1062		95.19
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.91
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.84
KOG4190|consensus	1034		94.6
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.44
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.21
KOG0882|consensus	558		94.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.0
KOG4649|consensus	354		93.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.41
PRK02888	635	nitrous-oxide reductase; Validated	93.3
KOG1916|consensus	1283		93.28
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.16
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.11
KOG2444|consensus	238		92.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.85
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.83
KOG2377|consensus	657		91.76
PRK02888	635	nitrous-oxide reductase; Validated	91.68
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	91.63
PRK13616	591	lipoprotein LpqB; Provisional	91.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	91.41
KOG2395|consensus	644		91.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.36
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	90.45
KOG4460|consensus	741		90.16
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.96
KOG3621|consensus	726		89.78
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.77
KOG1275|consensus	1118		89.56
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.26
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	89.14
KOG3617|consensus	1416		88.96
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	88.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	87.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	86.74
KOG2066|consensus	846		86.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.09
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	85.91
KOG1920|consensus	1265		85.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.47
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	84.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.69
PRK10115	686	protease 2; Provisional	84.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.56
COG5167	776	VID27 Protein involved in vacuole import and degra	84.46
KOG1832|consensus	1516		84.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	83.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	83.04
KOG1645|consensus	463		83.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.2
PRK13616	591	lipoprotein LpqB; Provisional	81.18
KOG4499|consensus	310		81.06
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	80.2

>KOG0271|consensus

Probab=99.81  E-value=1.9e-19  Score=115.61  Aligned_cols=80  Identities=19%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.++|.|++|+|+|..|++|+.|.++++||.....              +.++.++|.+.|.+++|+|||..+++++.|
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--------------p~~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--------------cceeecCCccEEEEEEECCCcchhhccccC
Confidence            799999999999999999999999999999999887              789999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCh
Q psy11100         92 GLIIVWMLYKCNDD  105 (110)
Q Consensus        92 ~~i~~w~~~~~~~~  105 (110)
                      |+|++||+.+|..+
T Consensus       179 g~I~lwdpktg~~~  192 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQI  192 (480)
T ss_pred             CeEEEecCCCCCcc
Confidence            99999999987654

>KOG0263|consensus

Probab=99.77  E-value=3e-18  Score=117.02  Aligned_cols=89  Identities=28%  Similarity=0.505  Sum_probs=84.0

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ++..+|.+.|.|+.|+|+..++++|+.|.+|++||+.++.              ..+.+.+|.+.|.+++|||+|..+++
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------------~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------------SVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--------------EEEEecCCCCceEEEEEcCCCceEee
Confidence            5677999999999999999999999999999999999987              67889999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhhhC
Q psy11100         88 SDETGLIIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~~~  110 (110)
                      ++.|+.|.+||+.+++.+.+++.
T Consensus       595 g~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             cccCCcEEEEEcCCCcchhhhhc
Confidence            99999999999999999888763

>KOG0272|consensus

Probab=99.76  E-value=2.3e-18  Score=111.43  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=77.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ||...|.+++|+|||.++++|+.|..-+|||+.+++              .+..+.+|..+|.+++|+|+|..+++|+.|
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------------~im~L~gH~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------------CIMFLAGHIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecccCc--------------EEEEecccccceeeEeECCCceEEeecCCC
Confidence            899999999999999999999999999999999998              788899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      ++++|||++..+.+-.|
T Consensus       367 nt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTI  383 (459)
T ss_pred             CcEEEeeecccccceec
Confidence            99999999987765443

>KOG0263|consensus

Probab=99.72  E-value=4.6e-17  Score=111.37  Aligned_cols=83  Identities=27%  Similarity=0.497  Sum_probs=77.3

Q ss_pred             eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      +.++..||+++|.+++|+|+|++|++|+.|+.|.+||+..+.              ...++.+|++.|.++.||.+|..|
T Consensus       569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--------------~v~~l~~Ht~ti~SlsFS~dg~vL  634 (707)
T KOG0263|consen  569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--------------LVKQLKGHTGTIYSLSFSRDGNVL  634 (707)
T ss_pred             EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--------------chhhhhcccCceeEEEEecCCCEE
Confidence            457778999999999999999999999999999999999987              678889999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCC
Q psy11100         86 TSSDETGLIIVWMLYKC  102 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~  102 (110)
                      ++++.|.+|++||+.+-
T Consensus       635 asgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  635 ASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EecCCCCeEEEEEchhh
Confidence            99999999999998753

>KOG0266|consensus

Probab=99.67  E-value=1.2e-15  Score=102.76  Aligned_cols=82  Identities=24%  Similarity=0.417  Sum_probs=77.0

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|...|++++|+|+|+.+++|+.|+++++||+..+.              +...+..|.+.|.+++|++++..++++
T Consensus       241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--------------~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--------------CVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--------------EEEeeeccCCceEEEEECCCCCEEEEc
Confidence            344999999999999999999999999999999999976              788999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.|+.|++||+.++..
T Consensus       307 s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSK  322 (456)
T ss_pred             CCCccEEEEECCCCce
Confidence            9999999999999983

>KOG0266|consensus

Probab=99.67  E-value=7.9e-16  Score=103.69  Aligned_cols=84  Identities=19%  Similarity=0.347  Sum_probs=76.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|+++++++++.|+.+++||+... .              .+.++.+|...|++++|+|+++.+++++
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~--------------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs  265 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR--------------NLKTLKGHSTYVTSVAFSPDGNLLVSGS  265 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe--------------EEEEecCCCCceEEEEecCCCCEEEEec
Confidence            579999999999999999999999999999999443 4              6788999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|++|++||++++..+..+
T Consensus       266 ~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  266 DDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             CCCcEEEEeccCCeEEEee
Confidence            9999999999997766554

>KOG0271|consensus

Probab=99.66  E-value=3.4e-16  Score=100.83  Aligned_cols=83  Identities=22%  Similarity=0.342  Sum_probs=78.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|+.-|..+.|+||++++++++.|.+|++|+-.++.              .+..+.+|-+.|+.++|+.|.++++|++.|
T Consensus       365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk--------------~lasfRGHv~~VYqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK--------------FLASFRGHVAAVYQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             chhhheeeEEECCCccEEEEeecccceeeeeCCCcc--------------hhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence            899999999999999999999999999999999987              678899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      .+|++|++++.+....|
T Consensus       431 sTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  431 STLKVWDVRTKKLKQDL  447 (480)
T ss_pred             ceEEEEEeeeeeecccC
Confidence            99999999998876655

>KOG0291|consensus

Probab=99.65  E-value=1.5e-15  Score=104.37  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=78.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...+.+++++|||+++++|+.||.|++||...+.              +..++..|++.|..+.|+..|+.+.+++.|
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--------------C~vTFteHts~Vt~v~f~~~g~~llssSLD  413 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLD  413 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce--------------EEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence            789999999999999999999999999999999987              889999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      |+|+.||+...++.+++
T Consensus       414 GtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  414 GTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             CeEEeeeecccceeeee
Confidence            99999999988877654

>KOG0265|consensus

Probab=99.65  E-value=2.2e-15  Score=94.36  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.+.|..+.|+|+|.++++|+.|..|.+|++....             +....+++|++.|..+.|.+++..+++++.
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------------ENFWVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-------------cceeeeccccceeEeeeeccCCCEEEEecC
Confidence            3899999999999999999999999999999987654             134567899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~~  109 (110)
                      |.+++.||.++|+.+..+|
T Consensus       111 Dk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             CceEEEEecccceeeehhc
Confidence            9999999999999987765

>KOG0272|consensus

Probab=99.65  E-value=7.8e-17  Score=104.41  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=77.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...|..++|+|+|++|++++.|.+-++||+.+..              .+....+|+..|.+++|+|+|.++++|+.|
T Consensus       259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             cchhhheeeeecCCCceeeecccccchhhcccccch--------------hhHhhcccccccceeEecCCCceeeccCcc
Confidence            788999999999999999999999999999999886              556778999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      ..-++||+++|+.++.+
T Consensus       325 ~~~RvWDlRtgr~im~L  341 (459)
T KOG0272|consen  325 SLGRVWDLRTGRCIMFL  341 (459)
T ss_pred             chhheeecccCcEEEEe
Confidence            99999999999988754

>PTZ00421 coronin; Provisional

Probab=99.63  E-value=6.1e-15  Score=100.06  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=74.2

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|++ ..|++++.|+.|++||+....              ....+..|...|.+++|+|+|..+++++
T Consensus       122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--------------~~~~l~~h~~~V~sla~spdG~lLatgs  187 (493)
T PTZ00421        122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--------------AVEVIKCHSDQITSLEWNLDGSLLCTTS  187 (493)
T ss_pred             cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------------EEEEEcCCCCceEEEEEECCCCEEEEec
Confidence            4799999999999985 689999999999999999775              5667788999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||+++++.+.+
T Consensus       188 ~Dg~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        188 KDKKLNIIDPRDGTIVSS  205 (493)
T ss_pred             CCCEEEEEECCCCcEEEE
Confidence            999999999998876543

>PTZ00421 coronin; Provisional

Probab=99.59  E-value=1.9e-14  Score=97.64  Aligned_cols=90  Identities=14%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEEe
Q psy11100         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~   88 (110)
                      .+|++.|.+++|+| ++..|++++.|+.|++||+.....    ...   ....+..+.+|...|.+++|+|++ ..++++
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~----~~~---~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg  144 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL----TQN---ISDPIVHLQGHTKKVGIVSFHPSAMNVLASA  144 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc----ccc---cCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence            47999999999999 788999999999999999975420    000   001346678899999999999986 579999


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.|+.|++||+.++.....
T Consensus       145 s~DgtVrIWDl~tg~~~~~  163 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVEV  163 (493)
T ss_pred             eCCCEEEEEECCCCeEEEE
Confidence            9999999999998765443

>KOG0295|consensus

Probab=99.57  E-value=3.6e-14  Score=90.88  Aligned_cols=86  Identities=21%  Similarity=0.334  Sum_probs=76.4

Q ss_pred             ccCCCCCceEEEEEecC---------------CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe
Q psy11100          9 IAIPNNTKVNCLAWHQN---------------QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV   73 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~---------------~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   73 (110)
                      ....|.-+|.|++|.|+               ++.+++++.|+.+++||+..+.              +++++.+|.+.|
T Consensus       272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--------------cL~tL~ghdnwV  337 (406)
T KOG0295|consen  272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--------------CLFTLVGHDNWV  337 (406)
T ss_pred             hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--------------EEEEEeccccee
Confidence            34478889999999661               2589999999999999999997              899999999999


Q ss_pred             EEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         74 RAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        74 ~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ..++|+|.|++++|+.+|+++++||+.+++.+..+
T Consensus       338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             eeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence            99999999999999999999999999998876544

>KOG0279|consensus

Probab=99.57  E-value=2.2e-14  Score=89.24  Aligned_cols=81  Identities=21%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             CCCceEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +.+-|+|+.|+|+  ...+++++.|+.|++||+....              ....+.+|++.++.+++||||.++++++.
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------------l~~~~~gh~~~v~t~~vSpDGslcasGgk  212 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------------LRTTFIGHSGYVNTVTVSPDGSLCASGGK  212 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------------hhhccccccccEEEEEECCCCCEEecCCC
Confidence            4788999999997  6789999999999999999876              56778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhh
Q psy11100         91 TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~  107 (110)
                      ||.+.+||++.++.+..
T Consensus       213 dg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  213 DGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             CceEEEEEccCCceeEe
Confidence            99999999999887543

>KOG0318|consensus

Probab=99.57  E-value=4.5e-14  Score=94.01  Aligned_cols=83  Identities=20%  Similarity=0.435  Sum_probs=75.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee---ccCCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ---GHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .|..-|.|+.|+|||+++++.+.||.+.+||-.++.              ....+.   .|.+.|..++|+||+..++++
T Consensus       188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~  253 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------------KVGELEDSDAHKGSIFALSWSPDSTQFLTV  253 (603)
T ss_pred             ccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------------EEEEecCCCCccccEEEEEECCCCceEEEe
Confidence            577889999999999999999999999999999887              345555   799999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|.++++||+.+++.+.++
T Consensus       254 SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             cCCceEEEEEeeccceEEEe
Confidence            99999999999999887765

>KOG0275|consensus

Probab=99.57  E-value=3e-15  Score=95.31  Aligned_cols=99  Identities=20%  Similarity=0.376  Sum_probs=79.7

Q ss_pred             eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100          5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      +.+.|.++..+.+.|-.|+|||++|++|+.||.+.+|+..+++-. +     +-.++.-..+--+...|.|+.||.|.+.
T Consensus       204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-K-----DLkYQAqd~fMMmd~aVlci~FSRDsEM  277 (508)
T KOG0275|consen  204 LARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-K-----DLKYQAQDNFMMMDDAVLCISFSRDSEM  277 (508)
T ss_pred             hhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhh-h-----hhhhhhhcceeecccceEEEeecccHHH
Confidence            456678888899999999999999999999999999999876411 0     0111112223346789999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         85 LTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +++++.||.|++|.+++|.+++.+-
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhh
Confidence            9999999999999999999988664

>KOG0645|consensus

Probab=99.55  E-value=1.2e-13  Score=85.69  Aligned_cols=81  Identities=17%  Similarity=0.403  Sum_probs=72.9

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|+-.|..++|+|.|++|++++.|.++.+|.-....            +++..++.+|.++|.+++||++|.+|++++
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e------------fecv~~lEGHEnEVK~Vaws~sG~~LATCS  124 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE------------FECVATLEGHENEVKCVAWSASGNYLATCS  124 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc------------eeEEeeeeccccceeEEEEcCCCCEEEEee
Confidence            34799999999999999999999999999999877554            347788999999999999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|.++.+|....+
T Consensus       125 RDKSVWiWe~ded  137 (312)
T KOG0645|consen  125 RDKSVWIWEIDED  137 (312)
T ss_pred             CCCeEEEEEecCC
Confidence            9999999988743

>KOG1273|consensus

Probab=99.54  E-value=2.1e-14  Score=90.88  Aligned_cols=79  Identities=22%  Similarity=0.409  Sum_probs=72.3

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ..|+.|++.|.++|.|+.+|.|.+||..+..              ....+..|..+|.+++||++|+.|++++.|..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l   91 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL   91 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc--------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence            7889999999999999999999999999876              55778899999999999999999999999999999


Q ss_pred             EeCCCCCChhhhh
Q psy11100         97 WMLYKCNDDDEWK  109 (110)
Q Consensus        97 w~~~~~~~~~~~~  109 (110)
                      ||+.+|..+.++|
T Consensus        92 wDl~~gs~l~rir  104 (405)
T KOG1273|consen   92 WDLLKGSPLKRIR  104 (405)
T ss_pred             EeccCCCceeEEE
Confidence            9999998765543

>KOG0285|consensus

Probab=99.54  E-value=7.5e-14  Score=89.66  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=80.1

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|.+-|.|+++.|.++++++|+.|++++|||+.++.              ...++.+|...|..+++|+...++.++
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--------------LkltltGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--------------LKLTLTGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--------------EEEeecchhheeeeeeecccCceEEEe
Confidence            345899999999999999999999999999999999987              678889999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||++.++.+++.
T Consensus       212 gedk~VKCwDLe~nkvIR~Y  231 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHY  231 (460)
T ss_pred             cCCCeeEEEechhhhhHHHh
Confidence            99999999999999988764

>KOG0319|consensus

Probab=99.54  E-value=7.9e-14  Score=95.65  Aligned_cols=85  Identities=19%  Similarity=0.301  Sum_probs=79.9

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|+-+|.|+.|+|..+++++++.|++|++|.+....              ++.++.+|+..|..+.|-.+|..|+|++
T Consensus       501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS--------------ClkT~eGH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS--------------CLKTFEGHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             eeCCccceEEEEeccccceeEeccCCceEEEEEeccce--------------eeeeecCccceeEeeeeeeCCcEEEecc
Confidence            34899999999999999999999999999999999887              8899999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .||.+++|++.++.+...+
T Consensus       567 adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             CCCcEEEEeccchhhhhhh
Confidence            9999999999999887665

>KOG0286|consensus

Probab=99.53  E-value=9e-14  Score=87.14  Aligned_cols=82  Identities=13%  Similarity=0.210  Sum_probs=76.5

Q ss_pred             cCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .-+|++.|.++.++| +++.+++|+.|..-++||++.+.              ..+++.+|..-|+.++|.|+|.-|+++
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------------c~qtF~ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------------CVQTFEGHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------------eeEeecccccccceEEEccCCCeeeec
Confidence            348999999999999 89999999999999999999987              789999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|++.++||++..+.+
T Consensus       248 SDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQEL  264 (343)
T ss_pred             CCCceeEEEeecCCcEE
Confidence            99999999999987654

>KOG0315|consensus

Probab=99.53  E-value=8.3e-14  Score=85.79  Aligned_cols=83  Identities=23%  Similarity=0.391  Sum_probs=73.2

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|+..|+.+.|.-+|+++.+|+.||.++|||++...               .+....+...|+++..+|+...|++++.
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---------------~qR~~~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---------------CQRNYQHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc---------------cchhccCCCCcceEEecCCcceEEeecC
Confidence            3789999999999999999999999999999999854               2334456689999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      +|.|++||+.......++
T Consensus       145 sg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             CCcEEEEEccCCcccccc
Confidence            999999999998877665

>KOG0316|consensus

Probab=99.53  E-value=5.7e-14  Score=86.00  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=81.0

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      +...++++|.++.|+-+|++.++++.|.++++|+...+.              ++.+..+|..+|..++.+.|...|+++
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--------------liktYsghG~EVlD~~~s~Dnskf~s~   77 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--------------LIKTYSGHGHEVLDAALSSDNSKFASC   77 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--------------eeeeecCCCceeeeccccccccccccC
Confidence            345789999999999999999999999999999999887              889999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +.|..+.+||+++|+..+.++
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~r   98 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFR   98 (307)
T ss_pred             CCCceEEEEEcccCeeeeecc
Confidence            999999999999999988775

>KOG0289|consensus

Probab=99.53  E-value=5.2e-14  Score=91.97  Aligned_cols=78  Identities=24%  Similarity=0.413  Sum_probs=71.4

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      -.+++.+|+|||-.+++|..|+.|++||+.+..              ....|.+|++.|..++|+.+|.++++++.|+.|
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--------------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--------------NVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--------------ccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            358899999999999999999999999999886              567788999999999999999999999999999


Q ss_pred             EEEeCCCCCChh
Q psy11100         95 IVWMLYKCNDDD  106 (110)
Q Consensus        95 ~~w~~~~~~~~~  106 (110)
                      ++||+++-+++-
T Consensus       414 ~lwDLRKl~n~k  425 (506)
T KOG0289|consen  414 KLWDLRKLKNFK  425 (506)
T ss_pred             EEEEehhhcccc
Confidence            999999876654

>KOG0284|consensus

Probab=99.53  E-value=1.9e-14  Score=93.36  Aligned_cols=83  Identities=19%  Similarity=0.318  Sum_probs=75.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...|.+++|+|....+++++.||.++|||.....              ....+.+|...|.+++|+|....+++++.|
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------------ee~vL~GHgwdVksvdWHP~kgLiasgskD  243 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------------EERVLRGHGWDVKSVDWHPTKGLIASGSKD  243 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--------------hhheeccCCCCcceeccCCccceeEEccCC
Confidence            455899999999999999999999999999998765              346679999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      ..|++||.++|+.+..+
T Consensus       244 nlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATL  260 (464)
T ss_pred             ceeEeecCCCcchhhhh
Confidence            99999999999988765

>PTZ00420 coronin; Provisional

Probab=99.53  E-value=2.2e-13  Score=93.59  Aligned_cols=89  Identities=20%  Similarity=0.298  Sum_probs=70.5

Q ss_pred             CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      .+|.+.|.+++|+|+ +..|++|+.|+.+++|++......   .....   .....+.+|...|.+++|+|++.. ++++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---~~~i~---~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---VKEIK---DPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---ccccc---cceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            479999999999997 789999999999999999754200   00000   123456789999999999999876 5788


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|+.|++||+++++..
T Consensus       145 S~DgtIrIWDl~tg~~~  161 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRA  161 (568)
T ss_pred             eCCCeEEEEECCCCcEE
Confidence            99999999999988644

>KOG0264|consensus

Probab=99.52  E-value=1.4e-13  Score=89.80  Aligned_cols=79  Identities=24%  Similarity=0.405  Sum_probs=69.7

Q ss_pred             cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      ..+|+++|.|++|+|- +..||+|+.|++|++||++...             +.+.++.+|...|..+.|||... .|++
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------~~lh~~e~H~dev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------KPLHTFEGHEDEVFQVEWSPHNETVLAS  334 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------cCceeccCCCcceEEEEeCCCCCceeEe
Confidence            3479999999999995 5678999999999999999887             25788999999999999999755 5999


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      ++.|+.+.+||+..
T Consensus       335 Sg~D~rl~vWDls~  348 (422)
T KOG0264|consen  335 SGTDRRLNVWDLSR  348 (422)
T ss_pred             cccCCcEEEEeccc
Confidence            99999999999865

>PTZ00420 coronin; Provisional

Probab=99.51  E-value=3.1e-13  Score=92.84  Aligned_cols=83  Identities=12%  Similarity=0.228  Sum_probs=69.7

Q ss_pred             CCCCCceEEEEEecCCCE-EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|++.. +++++.|+.+++||+....              ....+. +...|.+++|+|+|..+++++
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------------~~~~i~-~~~~V~SlswspdG~lLat~s  186 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------------RAFQIN-MPKKLSSLKWNIKGNLLSGTC  186 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--------------EEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence            478999999999999875 5788999999999998775              333443 457899999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|+.|++||++++..+.++
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cCCEEEEEECCCCcEEEEE
Confidence            9999999999998765543

>KOG0315|consensus

Probab=99.51  E-value=3.2e-13  Score=83.27  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|++.+..+.+|||+++|++++.|.+++||+.+...             .....+.+|...+...+||-+|++|++++.
T Consensus       212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-------------kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-------------KLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             ecccceEEEEEECCCCcEEEeecCCceEEEEecCCce-------------eeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            3689999999999999999999999999999998763             145677889899999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhh
Q psy11100         91 TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~  107 (110)
                      |+..++|+++.++.+++
T Consensus       279 d~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  279 DHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             CCceeecccccCceeee
Confidence            99999999999886554

>KOG0279|consensus

Probab=99.50  E-value=3e-13  Score=84.27  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      -..+|.-.|..+..++||++.++++.|+.+++||+..+.              ..+.+.+|..-|.+++|+++...++++
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--------------~t~~f~GH~~dVlsva~s~dn~qivSG  123 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--------------STRRFVGHTKDVLSVAFSTDNRQIVSG  123 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------EEEEEEecCCceEEEEecCCCceeecC
Confidence            344798899999999999999999999999999999986              678899999999999999999999999


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      +.|.+|.+||.-.+
T Consensus       124 SrDkTiklwnt~g~  137 (315)
T KOG0279|consen  124 SRDKTIKLWNTLGV  137 (315)
T ss_pred             CCcceeeeeeeccc
Confidence            99999999997543

>KOG0273|consensus

Probab=99.49  E-value=3.3e-13  Score=88.90  Aligned_cols=98  Identities=18%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc------C--------Cccccc--------------------
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES------T--------GQVAAA--------------------   56 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~------~--------~~~~~~--------------------   56 (110)
                      .+|+++|.++.|+|.|.+|++++.|+++++|+.......      .        .+..+.                    
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~  435 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK  435 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence            379999999999999999999999999999985432110      0        000000                    


Q ss_pred             ---ccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         57 ---NVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        57 ---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                         .....++..+-.|...|.+++|+|+|.++++++.|+.|.+|+.++++.+.+.
T Consensus       436 lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  436 LWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             EEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence               0011136677789999999999999999999999999999999998876654

>KOG0282|consensus

Probab=99.48  E-value=1.4e-14  Score=95.39  Aligned_cols=85  Identities=18%  Similarity=0.310  Sum_probs=77.9

Q ss_pred             CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|+..|+++.|.| .+.++++++.|+.|++|++....             .+++++.+|...|..++|+++|..|+|++
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s  277 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------RCLRTFKGHRKPVRDASFNNCGTSFLSAS  277 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------ceehhhhcchhhhhhhhccccCCeeeeee
Confidence            38999999999999 79999999999999999998743             27899999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|..|++||.++|+.+..+
T Consensus       278 fD~~lKlwDtETG~~~~~f  296 (503)
T KOG0282|consen  278 FDRFLKLWDTETGQVLSRF  296 (503)
T ss_pred             cceeeeeeccccceEEEEE
Confidence            9999999999999987654

>KOG0275|consensus

Probab=99.47  E-value=6e-14  Score=89.46  Aligned_cols=88  Identities=19%  Similarity=0.354  Sum_probs=81.4

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ++...|+..|+|+.|+.|+.-+.+++.|..+++..+.+++              ++..+.+|++.|+...|.++|..+++
T Consensus       300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------------~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------------CLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------------hHHHhcCccccccceEEcCCCCeEEE
Confidence            4555799999999999999999999999999999999987              78889999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ++.||++++|+..++.++.++|
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             ecCCccEEEecCcchhhhhhcc
Confidence            9999999999999998887765

>KOG2041|consensus

Probab=99.47  E-value=4.7e-13  Score=92.57  Aligned_cols=109  Identities=55%  Similarity=0.912  Sum_probs=95.9

Q ss_pred             CceeeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100          1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWN   79 (110)
Q Consensus         1 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s   79 (110)
                      |+.|++|++.++......|+.|+.+..++++|+.||.+++..+.+.... ++..-.+..++.+.+++.+|+..|.-+.|+
T Consensus         1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN   80 (1189)
T KOG2041|consen    1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN   80 (1189)
T ss_pred             CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence            8999999999999999999999999999999999999999888765321 112224566777889999999999999999


Q ss_pred             CCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         80 EQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        80 ~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      .+.+.+-+++.+|.|.+|.+.+|+|..||.
T Consensus        81 e~~QKLTtSDt~GlIiVWmlykgsW~EEMi  110 (1189)
T KOG2041|consen   81 ENNQKLTTSDTSGLIIVWMLYKGSWCEEMI  110 (1189)
T ss_pred             cccccccccCCCceEEEEeeecccHHHHHh
Confidence            999999999999999999999999999984

>KOG0285|consensus

Probab=99.47  E-value=3.6e-13  Score=86.57  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=76.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +-+|-+.|.|++.+|.-..|++++.|..+++||++...              ....+.+|.+.|..+.+.|....+++++
T Consensus       231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--------------~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--------------SVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             hccccceeEEEeccccceeEEecCCcceEEEeeecccc--------------eEEEecCCCCcceeEEeecCCCceEEec
Confidence            34899999999999999999999999999999999876              6788999999999999999888899999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|++|++||++.|+-...
T Consensus       297 ~D~tvrlWDl~agkt~~t  314 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMIT  314 (460)
T ss_pred             CCceEEEeeeccCceeEe
Confidence            999999999998876543

>KOG0319|consensus

Probab=99.46  E-value=2.4e-13  Score=93.34  Aligned_cols=86  Identities=19%  Similarity=0.349  Sum_probs=78.4

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ....|.-.|++++.+|+..++++|+.|.+.++|+++...              ...++.+|+..|.++.|+|.++.++++
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--------------l~~vLsGH~RGvw~V~Fs~~dq~laT~  523 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--------------LLGVLSGHTRGVWCVSFSKNDQLLATC  523 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCce--------------EEEEeeCCccceEEEEeccccceeEec
Confidence            344688899999999999999999999999999999665              788999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|++|++|.+.+.+++.++
T Consensus       524 SgD~TvKIW~is~fSClkT~  543 (775)
T KOG0319|consen  524 SGDKTVKIWSISTFSCLKTF  543 (775)
T ss_pred             cCCceEEEEEeccceeeeee
Confidence            99999999999988876554

>KOG0283|consensus

Probab=99.45  E-value=4.1e-13  Score=92.77  Aligned_cols=80  Identities=13%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~   88 (110)
                      ..||++.|.++.|+.+ .+|++++.|.+|++|++....              ++.+| .|.+.|+|++|+| |.++|++|
T Consensus       365 f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--------------CL~~F-~HndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--------------CLKVF-SHNDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             hhccchhheecccccC-CeeEeccccccEEeecCCCcc--------------eeeEE-ecCCeeEEEEecccCCCcEeec
Confidence            3489999999999974 578899999999999999765              55555 5889999999999 56679999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|+.+++|++...+..
T Consensus       429 SLD~KvRiWsI~d~~Vv  445 (712)
T KOG0283|consen  429 SLDGKVRLWSISDKKVV  445 (712)
T ss_pred             ccccceEEeecCcCeeE
Confidence            99999999999877653

>KOG0292|consensus

Probab=99.44  E-value=4e-13  Score=94.29  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=77.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|.++|..+.|+|.+.++++|+.|..+++|+....+              +++++.+|-+.|..+.|++.-.+++|+++|
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--------------clftL~GHlDYVRt~~FHheyPWIlSASDD  114 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--------------CLFTLLGHLDYVRTVFFHHEYPWILSASDD  114 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccce--------------ehhhhccccceeEEeeccCCCceEEEccCC
Confidence            699999999999999999999999999999999887              889999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      .+|++||..+++.+-
T Consensus       115 QTIrIWNwqsr~~ia  129 (1202)
T KOG0292|consen  115 QTIRIWNWQSRKCIA  129 (1202)
T ss_pred             CeEEEEeccCCceEE
Confidence            999999999887654

>KOG0645|consensus

Probab=99.44  E-value=3.7e-12  Score=79.27  Aligned_cols=82  Identities=21%  Similarity=0.360  Sum_probs=73.0

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ....||.+.|.|++|+++|++||+++.|.+|.+|.+....           -+.+...+..|++-|..+.|+|...+|++
T Consensus        99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-----------Efec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-----------EFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-----------cEEEEeeeccccccccEEEEcCCcceeEE
Confidence            3445899999999999999999999999999999998554           23467788999999999999999999999


Q ss_pred             ecCCCcEEEEeCC
Q psy11100         88 SDETGLIIVWMLY  100 (110)
Q Consensus        88 ~~~~~~i~~w~~~  100 (110)
                      ++.|++|++|+-.
T Consensus       168 ~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  168 CSYDNTIKVYRDE  180 (312)
T ss_pred             eccCCeEEEEeec
Confidence            9999999999766

>KOG0286|consensus

Probab=99.44  E-value=3.3e-12  Score=80.24  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100          5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      -.+++..+|.++|.++.|++|++.+++++.||.+.|||..+..              -...+.-....|...+|+|.|+.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--------------K~haipl~s~WVMtCA~sPSg~~  111 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--------------KVHAIPLPSSWVMTCAYSPSGNF  111 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--------------ceeEEecCceeEEEEEECCCCCe
Confidence            4567888999999999999999999999999999999999876              23455666788999999999999


Q ss_pred             EEEecCCCcEEEEeCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~  102 (110)
                      +++++.|+...+|++.+.
T Consensus       112 VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen  112 VACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             EEecCcCceeEEEecccc
Confidence            999999999999998854

>KOG0640|consensus

Probab=99.44  E-value=5e-13  Score=84.75  Aligned_cols=98  Identities=13%  Similarity=0.256  Sum_probs=79.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC--Ccc--cccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST--GQV--AAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .|++++.+-+|+|||.++++|+.|.+++++|+.......  ...  ...+.....++++..|...|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            589999999999999999999999999999987432111  111  1112222368899999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ++.|++|+++|+.+....+.+|
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K  211 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFK  211 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHH
Confidence            9999999999999887766654

>KOG0973|consensus

Probab=99.44  E-value=1.1e-12  Score=92.81  Aligned_cols=95  Identities=20%  Similarity=0.322  Sum_probs=79.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc--CCc--ccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES--TGQ--VAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .|.+.|.|+.|+|||+++|+|+.|+.+.+|........  .+.  .....++|.....+.+|...|..+.|+|++.++++
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS  146 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS  146 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence            68999999999999999999999999999988741100  111  12446788888899999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChh
Q psy11100         88 SDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~  106 (110)
                      ++.|++|.+||..+...+.
T Consensus       147 ~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ecccceEEEEccccceeee
Confidence            9999999999988765443

>KOG0318|consensus

Probab=99.43  E-value=1.3e-12  Score=87.27  Aligned_cols=83  Identities=10%  Similarity=0.260  Sum_probs=71.6

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ....|.+++++++++||+.+|+++...+.+.+||..+..             ........|+..|++++|+|+..+++++
T Consensus       482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~-------------~~~~~w~FHtakI~~~aWsP~n~~vATG  548 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE-------------VKTNRWAFHTAKINCVAWSPNNKLVATG  548 (603)
T ss_pred             eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc-------------eecceeeeeeeeEEEEEeCCCceEEEec
Confidence            345799999999999999999999999999999999865             0123344589999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.|..|.+|++.+-..
T Consensus       549 SlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  549 SLDTNVIIYSVKKPAK  564 (603)
T ss_pred             cccceEEEEEccChhh
Confidence            9999999999886543

>KOG0276|consensus

Probab=99.43  E-value=1.1e-12  Score=89.18  Aligned_cols=90  Identities=19%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             eeeccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC--
Q psy11100          6 SKKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY--   82 (110)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--   82 (110)
                      ......+|+-.|.+++|+|. .+.+++++.|++|++|.+....              +.+++.+|...|+++.+-+.|  
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------------~nfTl~gHekGVN~Vdyy~~gdk  197 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------------PNFTLEGHEKGVNCVDYYTGGDK  197 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------------CceeeeccccCcceEEeccCCCc
Confidence            34566799999999999994 6789999999999999999876              789999999999999997755  


Q ss_pred             CeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         83 EKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ..++++++|.++++||+.+..++.++.
T Consensus       198 pylIsgaDD~tiKvWDyQtk~CV~TLe  224 (794)
T KOG0276|consen  198 PYLISGADDLTIKVWDYQTKSCVQTLE  224 (794)
T ss_pred             ceEEecCCCceEEEeecchHHHHHHhh
Confidence            469999999999999999999888763

>KOG1407|consensus

Probab=99.43  E-value=5.1e-13  Score=82.75  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|.+...|+.|+|+|+++|+|+.|-.+.+||+....              +.+.+..+..+|..+.||.+|++|++++.|
T Consensus       187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------------C~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------------CERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccccceeeccChhHhh--------------hheeeccccCceEEEEeccCcceeeccCcc
Confidence            688999999999999999999999999999999886              778888899999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhhhh
Q psy11100         92 GLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~~  109 (110)
                      ..|.+=++++|..+.|++
T Consensus       253 h~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             ceEEeEecccCCeEEEee
Confidence            999999999999887763

>KOG0284|consensus

Probab=99.41  E-value=5.3e-13  Score=86.75  Aligned_cols=84  Identities=23%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.-.|.++.|+|...++++|++|+.|++||.+++.              ++.++..|++.|..+.|+|++.+|++++
T Consensus       218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~--------------cl~tlh~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--------------CLATLHGHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             eccCCCCcceeccCCccceeEEccCCceeEeecCCCcc--------------hhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence            35888899999999999999999999999999999987              7888999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|..++++|+++-+-+..
T Consensus       284 kD~~~kv~DiR~mkEl~~  301 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKELFT  301 (464)
T ss_pred             CCceEEEEehhHhHHHHH
Confidence            999999999985544443

>KOG0302|consensus

Probab=99.41  E-value=1.2e-12  Score=84.46  Aligned_cols=85  Identities=22%  Similarity=0.445  Sum_probs=70.2

Q ss_pred             eccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100          8 KIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ....+|+..|..++|+|. ...+++++.|++++|||++.+.+   .         .....+.|.+-|+-+.||.+..+|+
T Consensus       251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~---~---------~~~~~kAh~sDVNVISWnr~~~lLa  318 (440)
T KOG0302|consen  251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK---K---------AAVSTKAHNSDVNVISWNRREPLLA  318 (440)
T ss_pred             ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc---c---------ceeEeeccCCceeeEEccCCcceee
Confidence            344579999999999996 55789999999999999998741   1         1223378888999999999988999


Q ss_pred             EecCCCcEEEEeCCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCND  104 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~  104 (110)
                      +|+.+|++.+||+++-+.
T Consensus       319 sG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  319 SGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             ecCCCceEEEEEhhhccC
Confidence            999999999999986443

>KOG1034|consensus

Probab=99.41  E-value=1.7e-12  Score=82.63  Aligned_cols=84  Identities=12%  Similarity=0.229  Sum_probs=72.4

Q ss_pred             cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe---eccCCCeEEEEEcCCCCeE
Q psy11100         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL---QGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l   85 (110)
                      +.+|...|..+.++|+ .+++++++.|.+|++|++.+..              ++..+   .+|.+.|.++.|+++|..+
T Consensus       131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--------------Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--------------CVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--------------EEEEecccccccCcEEEEEEcCCCCee
Confidence            4489999999999997 5789999999999999999876              44444   4689999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCChhh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      +|++-|.+|.+|++...+....
T Consensus       197 ~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             eccCCcceEEEEecChhHHhhh
Confidence            9999999999999986555443

>KOG0273|consensus

Probab=99.41  E-value=1.1e-12  Score=86.46  Aligned_cols=79  Identities=23%  Similarity=0.440  Sum_probs=71.8

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      +..|++++|+.+|..|++|+.+|.+++|+.....               +.++..|.++|.++.|+.+|.++++++.|++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---------------~~tl~~HkgPI~slKWnk~G~yilS~~vD~t  299 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---------------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGT  299 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---------------hhhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence            4579999999999999999999999999998764               5678889999999999999999999999999


Q ss_pred             EEEEeCCCCCChhh
Q psy11100         94 IIVWMLYKCNDDDE  107 (110)
Q Consensus        94 i~~w~~~~~~~~~~  107 (110)
                      +.+||..+|.....
T Consensus       300 tilwd~~~g~~~q~  313 (524)
T KOG0273|consen  300 TILWDAHTGTVKQQ  313 (524)
T ss_pred             EEEEeccCceEEEe
Confidence            99999988876543

>KOG0293|consensus

Probab=99.41  E-value=2.3e-12  Score=84.12  Aligned_cols=89  Identities=16%  Similarity=0.260  Sum_probs=77.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ...|+.+|..+.|+++|++||+++.|.+.-+|.+....           .+....++.+|...|.-+.||||.+.+++|+
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~-----------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV-----------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc-----------ceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            34699999999999999999999999999999987654           1235678899999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~~  109 (110)
                      .+..+.+||+.+|.....++
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             chHheeeccCCcchhhhhcc
Confidence            99999999999988766543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.41  E-value=6.5e-12  Score=77.88  Aligned_cols=81  Identities=28%  Similarity=0.466  Sum_probs=71.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.++|.++.|+|+++.+++++.++.+++|+.....              ....+..|...+..+.|+|++..+++++.+
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~   72 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--------------LLRTLKGHTGPVRDVAASADGTYLASGSSD   72 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--------------cEEEEecCCcceeEEEECCCCCEEEEEcCC
Confidence            799999999999999999999999999999998765              455667788888999999999999999999


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      +.+.+|++.+++...
T Consensus        73 ~~i~i~~~~~~~~~~   87 (289)
T cd00200          73 KTIRLWDLETGECVR   87 (289)
T ss_pred             CeEEEEEcCcccceE
Confidence            999999998865443

>KOG0296|consensus

Probab=99.40  E-value=4e-12  Score=81.68  Aligned_cols=86  Identities=21%  Similarity=0.341  Sum_probs=78.1

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ....|++.|.+++.+|+.+++++|+.|-.-.+|++..+.              ....+.+|...|.++.||.+|.+|+++
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------------~~~eltgHKDSVt~~~FshdgtlLATG  124 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------------FAGELTGHKDSVTCCSFSHDGTLLATG  124 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------ceeEecCCCCceEEEEEccCceEEEec
Confidence            344799999999999999999999999999999999987              678889999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.+|.|.+|+..++....++
T Consensus       125 dmsG~v~v~~~stg~~~~~~  144 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQWKL  144 (399)
T ss_pred             CCCccEEEEEcccCceEEEe
Confidence            99999999999988765443

>KOG0264|consensus

Probab=99.37  E-value=6.1e-12  Score=82.31  Aligned_cols=90  Identities=21%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      +|...|.++.|+|. ...|++++.|+.+.+||+......+........+.++++...+|+..|..+.|+|...+ ++|++
T Consensus       314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            79999999999997 56789999999999999987654444344445555678999999999999999999998 88999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .|+.+.+|++..
T Consensus       394 eDN~LqIW~~s~  405 (422)
T KOG0264|consen  394 EDNILQIWQMAE  405 (422)
T ss_pred             CCceEEEeeccc
Confidence            999999999864

>KOG2394|consensus

Probab=99.36  E-value=1.2e-12  Score=87.58  Aligned_cols=78  Identities=18%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .+.+...+|+|||+.||+-+.||.++|||.....              .+...+.+-+...|++|||||+++++++.|-.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--------------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL  355 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--------------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL  355 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHH--------------HHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence            3578889999999999999999999999999875              45556667788999999999999999999999


Q ss_pred             EEEEeCCCCCCh
Q psy11100         94 IIVWMLYKCNDD  105 (110)
Q Consensus        94 i~~w~~~~~~~~  105 (110)
                      |.||.+..++.+
T Consensus       356 VtVwSf~erRVV  367 (636)
T KOG2394|consen  356 VTVWSFEERRVV  367 (636)
T ss_pred             EEEEEeccceEE
Confidence            999999877653

>KOG1445|consensus

Probab=99.36  E-value=1.1e-12  Score=89.69  Aligned_cols=81  Identities=20%  Similarity=0.350  Sum_probs=72.1

Q ss_pred             ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...|..+|..+.|+|- ...|++++.|-++++||+....              ....+.+|+++|..++|||+|+.+++
T Consensus       672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--------------~~~~l~gHtdqIf~~AWSpdGr~~At  737 (1012)
T KOG1445|consen  672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--------------LYSRLVGHTDQIFGIAWSPDGRRIAT  737 (1012)
T ss_pred             eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--------------hhheeccCcCceeEEEECCCCcceee
Confidence            34478999999999995 5678999999999999999876              44678899999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      .+.||.|++++.+++.
T Consensus       738 VcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             eecCceEEEeCCCCCC
Confidence            9999999999998754

>KOG0643|consensus

Probab=99.35  E-value=1e-11  Score=77.30  Aligned_cols=87  Identities=13%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      +..+|.-+++.+.++.+|.+|.+++.|....+|-...+.              .+.++.+|++.|.++..+-+...++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--------------rlGty~GHtGavW~~Did~~s~~liTG   70 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--------------RLGTYDGHTGAVWCCDIDWDSKHLITG   70 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--------------eeeeecCCCceEEEEEecCCcceeeec
Confidence            345899999999999999999999999999999887776              789999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +.|.++++||+++|+.+-.++
T Consensus        71 SAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             cccceeEEEEcCCCcEEEEee
Confidence            999999999999998775543

>KOG0282|consensus

Probab=99.35  E-value=2.3e-12  Score=85.08  Aligned_cols=88  Identities=11%  Similarity=0.120  Sum_probs=75.3

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~   86 (110)
                      +.+.+|..+|.+++|+++|..+.+++.|+.+++||..++.              ....+.. ...+.++.|+|++ ..|+
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~--------------~~~~f~~-~~~~~cvkf~pd~~n~fl  316 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ--------------VLSRFHL-DKVPTCVKFHPDNQNIFL  316 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce--------------EEEEEec-CCCceeeecCCCCCcEEE
Confidence            4566899999999999999999999999999999999997              4444432 3457899999998 5589


Q ss_pred             EecCCCcEEEEeCCCCCChhhhhC
Q psy11100         87 SSDETGLIIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~~~~~  110 (110)
                      .|+.|+.|+.||++++..+.|+.+
T Consensus       317 ~G~sd~ki~~wDiRs~kvvqeYd~  340 (503)
T KOG0282|consen  317 VGGSDKKIRQWDIRSGKVVQEYDR  340 (503)
T ss_pred             EecCCCcEEEEeccchHHHHHHHh
Confidence            999999999999999999888753

>KOG0265|consensus

Probab=99.35  E-value=8.5e-12  Score=78.57  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      ..+|.+.|..+.|.+|++.+++++.|..++.||..++.              ..+.++.|...|+.+.-+..|.. +.++
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~--------------~~rk~k~h~~~vNs~~p~rrg~~lv~Sg  151 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK--------------RIRKHKGHTSFVNSLDPSRRGPQLVCSG  151 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccce--------------eeehhccccceeeecCccccCCeEEEec
Confidence            34899999999999999999999999999999999997              67888999999999986666766 7788


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.|+++++||+++...+..
T Consensus       152 sdD~t~kl~D~R~k~~~~t  170 (338)
T KOG0265|consen  152 SDDGTLKLWDIRKKEAIKT  170 (338)
T ss_pred             CCCceEEEEeecccchhhc
Confidence            8999999999997665543

>KOG1009|consensus

Probab=99.34  E-value=8.4e-12  Score=81.11  Aligned_cols=96  Identities=16%  Similarity=0.263  Sum_probs=79.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC--cCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE--STGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..|+..|+++.|+|+|++|++|+.+|.+.+|-...-..  ........++.+.....+.+|...+..++|+|++..++++
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            36889999999999999999999999999998763211  1111223456677788888999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChh
Q psy11100         89 DETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~  106 (110)
                      +.|+++++||++.|+...
T Consensus       142 s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen  142 SVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             eccceEEEEEeccceeEe
Confidence            999999999999988653

>KOG0647|consensus

Probab=99.34  E-value=9.3e-12  Score=78.51  Aligned_cols=81  Identities=21%  Similarity=0.405  Sum_probs=66.6

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +-...|.+++|||. ...+++++-|+.||+|++....    ..        .......|.+.|.+++|+.+|..+.+++.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~--------~~ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QL--------VPKAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCC----cc--------cchhhhccCCCeEEEEEccCCceEEeecc
Confidence            44578999999994 5567799999999999998742    00        11334568899999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      |+.+++||+.+++.
T Consensus        93 Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   93 DKQAKLWDLASGQV  106 (347)
T ss_pred             CCceEEEEccCCCe
Confidence            99999999999865

>KOG0291|consensus

Probab=99.34  E-value=8.7e-12  Score=86.33  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .+..||.++|.+++|+|++..|++++.|.+|++||+....             ....++ .+...+..++|+|+|.-++.
T Consensus       472 DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-------------~~vEtl-~i~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-------------GTVETL-EIRSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC-------------ceeeeE-eeccceeEEEEcCCCCeEEE
Confidence            3556999999999999999999999999999999998764             012222 34567889999999999999


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      ++.||.|.+||...+..
T Consensus       538 aTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             EEecceEEEEEhhhcee
Confidence            99999999999876543

>KOG0302|consensus

Probab=99.34  E-value=1.6e-11  Score=79.46  Aligned_cols=86  Identities=27%  Similarity=0.521  Sum_probs=71.9

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      ..|.+.|..+.|+.+..+|++|+.+|.++|||++....   .        ++..+++.|...|+++.|+|...- |+.++
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~--------~pVA~fk~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---G--------QPVATFKYHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---C--------CcceeEEeccCCeeEEEeccccCceEEecc
Confidence            46889999999999878999999999999999987541   0        256789999999999999997554 88888


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|.+|.+||+.-.+...|
T Consensus       368 ~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  368 EDNQITIWDLSVEADEEE  385 (440)
T ss_pred             CCCcEEEEEeeccCChhh
Confidence            999999999986665443

>KOG0772|consensus

Probab=99.33  E-value=4.6e-12  Score=84.66  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC--CeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG--KVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~   89 (110)
                      +..-.++.++|+|+|.++|+|+.||+|.+|+......   .+        ....-..|..  .|.++.||++|+.|++.+
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p--------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RP--------VMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCccc---cc--------ceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            4456789999999999999999999999999865431   00        1223345655  799999999999999999


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .|.++++||+++-+
T Consensus       384 ~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFK  397 (641)
T ss_pred             CCCceeeeeccccc
Confidence            99999999998643

>KOG0316|consensus

Probab=99.32  E-value=1.3e-11  Score=75.77  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=74.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+.+|..+|...+.+.|+..+++++.|..+.+||+.+++              ..+.+.+|.++|+.++|+.+...++++
T Consensus        54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk--------------v~Rr~rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK--------------VDRRFRGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             eecCCCceeeeccccccccccccCCCCceEEEEEcccCe--------------eeeecccccceeeEEEecCcceEEEec
Confidence            445788899999999999999999999999999999998              789999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCC
Q psy11100         89 DETGLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~  103 (110)
                      +-|.++++||-++.+
T Consensus       120 sfD~s~r~wDCRS~s  134 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSRS  134 (307)
T ss_pred             cccceeEEEEcccCC
Confidence            999999999988754

>KOG0303|consensus

Probab=99.32  E-value=3.4e-12  Score=82.94  Aligned_cols=90  Identities=17%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      +|+++|..+.|+|. .+.+|+|+.|.++.+|.+....    ....   ..++...+.+|...|..++|+|.... |++++
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~----l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG----LTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcc----cccC---cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            89999999999995 6679999999999999998653    1111   11245678899999999999997655 88999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|+.|.+||+.+|..+.++
T Consensus       152 ~Dn~v~iWnv~tgeali~l  170 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITL  170 (472)
T ss_pred             CCceEEEEeccCCceeeec
Confidence            9999999999999877655

>KOG0305|consensus

Probab=99.31  E-value=1e-11  Score=83.51  Aligned_cols=84  Identities=18%  Similarity=0.277  Sum_probs=72.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~   88 (110)
                      ..+|...|..++|++|+..+++|+.|+.+.|||.....              +...+..|...|..++|+|- ..+||+|
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------------p~~~~~~H~aAVKA~awcP~q~~lLAsG  362 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------------PKFTFTEHTAAVKALAWCPWQSGLLATG  362 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------------ccEEEeccceeeeEeeeCCCccCceEEc
Confidence            34699999999999999999999999999999996554              56788999999999999995 4558887


Q ss_pred             c--CCCcEEEEeCCCCCChhh
Q psy11100         89 D--ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~--~~~~i~~w~~~~~~~~~~  107 (110)
                      +  .|+.|++||..+|..+..
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             CCCcccEEEEEEcCCCcEecc
Confidence            6  588999999998887654

>KOG0640|consensus

Probab=99.31  E-value=5.8e-12  Score=80.01  Aligned_cols=90  Identities=11%  Similarity=0.216  Sum_probs=77.6

Q ss_pred             eeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cC-CCeEEEEEcCC
Q psy11100          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HS-GKVRAIIWNEQ   81 (110)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~s~~   81 (110)
                      |++.....+|++.|+++.+++.++.-++++.||.+++||--+.+              ++.++.. |. .+|.+..|..+
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccC
Confidence            45556666899999999999999999999999999999988776              5566643 54 57999999999


Q ss_pred             CCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         82 YEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        82 ~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      |.++++.+.|..+++|++.+++-+.+
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEE
Confidence            99999999999999999999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.31  E-value=2.9e-11  Score=86.44  Aligned_cols=80  Identities=15%  Similarity=0.363  Sum_probs=69.4

Q ss_pred             CCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~   90 (110)
                      +...+.+++|+|. +..+++++.|+.+++||+....              ....+.+|...|.+++|+| ++..|++++.
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--------------LVTEMKEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence            4567889999884 7889999999999999998765              5677889999999999997 6788999999


Q ss_pred             CCcEEEEeCCCCCChh
Q psy11100         91 TGLIIVWMLYKCNDDD  106 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~  106 (110)
                      |+.|++||++++..+.
T Consensus       597 Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        597 DGSVKLWSINQGVSIG  612 (793)
T ss_pred             CCEEEEEECCCCcEEE
Confidence            9999999998876543

>KOG0310|consensus

Probab=99.31  E-value=1.8e-11  Score=80.91  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=71.3

Q ss_pred             CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~   88 (110)
                      .+|+.++..+.|+|+ +..+++|+.|..+++||+.+..              ....+.+|++.|.+.+|+|... .+++|
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------VQAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------EEEEecCCcceeEeeccccCCCeEEEec
Confidence            379999999999996 4568888889999999999875              4457889999999999999755 59999


Q ss_pred             cCCCcEEEEeCCCC-CChhhh
Q psy11100         89 DETGLIIVWMLYKC-NDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~-~~~~~~  108 (110)
                      +.||.|++||.+.. ..+.|+
T Consensus       173 sYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             CCCceEEEEEeccCCceeEEe
Confidence            99999999999875 555554

>KOG4283|consensus

Probab=99.31  E-value=1.1e-11  Score=78.31  Aligned_cols=95  Identities=20%  Similarity=0.410  Sum_probs=72.7

Q ss_pred             eccCCCCCceEEEEEecCCCE-EEEEecCCcEEEEEcCCCCCcCCccc---ccc-cceeeeEEeeccCCCeEEEEEcCCC
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVA---AAN-VNLAMNQSLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~v~~~~~s~~~   82 (110)
                      .+..+|.+.|.++.|+|..++ |++|+.||.+++||+....   +...   ... ...+.+.+-..|.+.|+.++|+.++
T Consensus       182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc---ceeEEeecccCccCccccccccccceeeeeeecccc
Confidence            455689999999999998775 7899999999999998653   1111   000 0001122334578899999999999


Q ss_pred             CeEEEecCCCcEEEEeCCCCCCh
Q psy11100         83 EKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ..+++++.|..+++|+..+|+..
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             hhhhhccCccceEEeecccCccc
Confidence            99999999999999999988763

>KOG0295|consensus

Probab=99.31  E-value=2.6e-11  Score=78.05  Aligned_cols=88  Identities=22%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...+|.-.|.+++|-|.|..+++++.|.++++|+...+-              +..++.+|...|.-++.+.||.++++
T Consensus       187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--------------eEEeccCchHhEEEEEecCCeeEEEe
Confidence            4556899999999999999999999999999999999987              78999999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ++.|.+|++|-+.+++...++|
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR  274 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELR  274 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhh
Confidence            9999999999999998887776

>KOG0647|consensus

Probab=99.31  E-value=3.2e-11  Score=76.14  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC--eEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE--KLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~   89 (110)
                      .|.++|.+++|+.||.++++|+.|+.+++||+.++.               ..+...|...|..+.|-+...  .|++++
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS  134 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGS  134 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---------------eeeeeecccceeEEEEecCCCcceeEecc
Confidence            588999999999999999999999999999999875               466788999999999976544  689999


Q ss_pred             CCCcEEEEeCCCCCChh
Q psy11100         90 ETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~  106 (110)
                      =|.+|++||.+...-+.
T Consensus       135 WDKTlKfWD~R~~~pv~  151 (347)
T KOG0647|consen  135 WDKTLKFWDTRSSNPVA  151 (347)
T ss_pred             cccceeecccCCCCeee
Confidence            99999999999765443

>KOG0269|consensus

Probab=99.31  E-value=6.8e-12  Score=86.84  Aligned_cols=82  Identities=17%  Similarity=0.334  Sum_probs=71.4

Q ss_pred             CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+....|.+++|+|. +..++++...|.|.+||++...             ++...+..|.+.|.++.|+|+..+||+|+
T Consensus       173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------------r~~~k~~AH~GpV~c~nwhPnr~~lATGG  239 (839)
T KOG0269|consen  173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------------RCEKKLTAHNGPVLCLNWHPNREWLATGG  239 (839)
T ss_pred             cccchhhhceeeccCCCceEEEecCCceEEEeeccCch-------------hHHHHhhcccCceEEEeecCCCceeeecC
Confidence            356678999999995 7789999999999999999765             25567888999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCh
Q psy11100         90 ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~  105 (110)
                      .|+.+++||+.+++..
T Consensus       240 RDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAK  255 (839)
T ss_pred             CCccEEEEeccCCCcc
Confidence            9999999999876543

>KOG0973|consensus

Probab=99.30  E-value=1.7e-11  Score=86.96  Aligned_cols=82  Identities=16%  Similarity=0.283  Sum_probs=75.6

Q ss_pred             eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      +..+..+|.+.|.++.|+|++.++++++.|++|.+|+..+..              .+..+.+|.+.|..+.|.|.|++|
T Consensus       121 ~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--------------~~~vl~~H~s~VKGvs~DP~Gky~  186 (942)
T KOG0973|consen  121 VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--------------LLKVLRGHQSLVKGVSWDPIGKYF  186 (942)
T ss_pred             EEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--------------eeeeeecccccccceEECCccCee
Confidence            456677899999999999999999999999999999999876              788999999999999999999999


Q ss_pred             EEecCCCcEEEEeCCC
Q psy11100         86 TSSDETGLIIVWMLYK  101 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~  101 (110)
                      ++-++|.+|++|+..+
T Consensus       187 ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  187 ASQSDDRTLKVWRTSD  202 (942)
T ss_pred             eeecCCceEEEEEccc
Confidence            9999999999999543

>KOG0639|consensus

Probab=99.29  E-value=5.5e-12  Score=84.28  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ..+++.+||.+...+++.||.|.|||+....              ..+++++|.+.+.|+..+++|..|-+++.|++|+.
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~--------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRc  577 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRC  577 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccce--------------eeecccCCCCCceeEEecCCCceeecCCCccceee
Confidence            4558889999999999999999999999876              78899999999999999999999999999999999


Q ss_pred             EeCCCCCChhh
Q psy11100         97 WMLYKCNDDDE  107 (110)
Q Consensus        97 w~~~~~~~~~~  107 (110)
                      ||++.++.+.+
T Consensus       578 WDlregrqlqq  588 (705)
T KOG0639|consen  578 WDLREGRQLQQ  588 (705)
T ss_pred             hhhhhhhhhhh
Confidence            99999876543

>KOG0292|consensus

Probab=99.29  E-value=1.6e-11  Score=86.48  Aligned_cols=94  Identities=22%  Similarity=0.373  Sum_probs=83.4

Q ss_pred             eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100          5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      +.|.+..||.-+|.-++|+|.-.++++|+.|..|++|....-+           - ...-++.+|.+.|+++-|+|...+
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-----------a-WEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-----------A-WEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-----------c-eeehhhhcccCCcceEEecCccce
Confidence            5678888999999999999999999999999999999988654           1 135678899999999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCChhhhhC
Q psy11100         85 LTSSDETGLIIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~~~~~~~~  110 (110)
                      ++|.+.|++|++||+.+...+.++||
T Consensus       265 IlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             eEecCCCccEEEEecccccceeeeec
Confidence            99999999999999999888877764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.28  E-value=1.1e-10  Score=72.29  Aligned_cols=83  Identities=30%  Similarity=0.462  Sum_probs=71.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|.+.+.++.|+|++.++++++.++.+++||+....              ....+..|...+.++.|+|++..++.++.+
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------------cceeEecCccccceEEECCCcCEEEEecCC
Confidence            578889999999999999888889999999998665              455666788899999999999888888889


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      +.+.+||+++++...++
T Consensus       199 ~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         199 GTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CcEEEEECCCCceecch
Confidence            99999999887665544

>KOG0294|consensus

Probab=99.28  E-value=4.2e-11  Score=76.00  Aligned_cols=79  Identities=16%  Similarity=0.290  Sum_probs=71.8

Q ss_pred             CCCCceEEEEEecCCC--EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~--~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .|.+.++++.|.++-.  .|++|+.||.+.+|+.....              ....++.|.++|+.++.+|.+.+-++.+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~~~slK~H~~~Vt~lsiHPS~KLALsVg  146 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------LLKSLKAHKGQVTDLSIHPSGKLALSVG  146 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------EeeeecccccccceeEecCCCceEEEEc
Confidence            6899999999998754  79999999999999999775              7889999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .|+.+++||+=.|+.
T Consensus       147 ~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  147 GDQVLRTWNLVRGRV  161 (362)
T ss_pred             CCceeeeehhhcCcc
Confidence            999999999876654

>KOG0303|consensus

Probab=99.27  E-value=1.6e-11  Score=79.83  Aligned_cols=83  Identities=17%  Similarity=0.244  Sum_probs=73.6

Q ss_pred             cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..+|+-.|..++|+|- .+.|++++.|+.|.+|++.++.              .+.++. |.+.|.++.||.+|..+++.
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------------ali~l~-hpd~i~S~sfn~dGs~l~Tt  191 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------------ALITLD-HPDMVYSMSFNRDGSLLCTT  191 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------------eeeecC-CCCeEEEEEeccCCceeeee
Confidence            3489999999999996 5678899999999999999987              444555 89999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.|..|++||.+++..+.|
T Consensus       192 ckDKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             cccceeEEEcCCCCcEeee
Confidence            9999999999999987765

>KOG0296|consensus

Probab=99.26  E-value=3.9e-11  Score=77.23  Aligned_cols=81  Identities=16%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      +.+.=+.|+|.+..++.|+.||.+.+|.+.+..              ....+.+|...+.+=.|.|+|+.++++..||+|
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcc--------------eeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence            345557899999999999999999999999865              567788999999999999999999999999999


Q ss_pred             EEEeCCCCCChhhhh
Q psy11100         95 IVWMLYKCNDDDEWK  109 (110)
Q Consensus        95 ~~w~~~~~~~~~~~~  109 (110)
                      ++||+.+|+-+..+.
T Consensus       215 ~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEecCCCceeEEec
Confidence            999999998776654

>KOG1446|consensus

Probab=99.25  E-value=1.7e-10  Score=72.93  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc----CCccc----------------cc--ccc--------eee
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES----TGQVA----------------AA--NVN--------LAM   62 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~----~~~~~----------------~~--~~~--------~~~   62 (110)
                      ..+.+.++.|+++|..+++++.|-.+++||...+...    .+...                +.  ...        -..
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            5678999999999999999999999999998766421    00000                00  000        012


Q ss_pred             eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         63 NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        63 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ++.+.+|...|.++..+|.+..++|++.|.+|++||++..+..
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence            7788999999999999999999999999999999999965553

>KOG0267|consensus

Probab=99.25  E-value=1.4e-11  Score=84.89  Aligned_cols=87  Identities=16%  Similarity=0.253  Sum_probs=78.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|...+..+.|+|-+.+.+.|+.|+.+++||+....              +...+.+|...|..++|+|+|.+++++
T Consensus       107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen  107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--------------CSHTYKSHTRVVDVLRLSPDGRWVASG  172 (825)
T ss_pred             hhhccccCcceeeeccceEEeccccccccceehhhhccC--------------ceeeecCCcceeEEEeecCCCceeecc
Confidence            345899999999999999999999999999999999665              678888899999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +.|.++++||...|+...|++
T Consensus       173 ~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             CCcceeeeecccccccccccc
Confidence            999999999999998887664

>KOG1274|consensus

Probab=99.25  E-value=9.2e-11  Score=82.52  Aligned_cols=94  Identities=21%  Similarity=0.369  Sum_probs=69.7

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----------------Cccc--c-------------
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----------------GQVA--A-------------   55 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----------------~~~~--~-------------   55 (110)
                      +...+|.++|.++.|+|++++||+.+.||.|++|++..+.-..                 ..+.  +             
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            4556899999999999999999999999999999987542110                 0000  0             


Q ss_pred             ----cccceeeeEEeec--cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100         56 ----ANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK  101 (110)
Q Consensus        56 ----~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~  101 (110)
                          .+.+|...+.+..  +...+..++|+|.|++||+++.+|.|.+||+.+
T Consensus       212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                0112222333332  234488999999999999999999999999986

>KOG0276|consensus

Probab=99.24  E-value=2e-11  Score=83.30  Aligned_cols=80  Identities=23%  Similarity=0.405  Sum_probs=72.1

Q ss_pred             CCCCCceEEEEEecCC--CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQ--GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~--~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+|..+|.|+.+-+.|  .+|++|+.|..+++||..+..              +.+++.+|.+.|+.+.|+|.-..+++|
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--------------CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--------------CVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--------------HHHHhhcccccceEEEecCCCcEEEEe
Confidence            3899999999997754  689999999999999999876              789999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.||++++|+-.+=+.
T Consensus       246 sEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKL  261 (794)
T ss_pred             cCCccEEEecCcceeh
Confidence            9999999998765443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.23  E-value=2.9e-10  Score=81.44  Aligned_cols=78  Identities=14%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc-CCCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN-EQYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~   88 (110)
                      .+|.+.|.+++|+| ++..+++|+.|+.+++||+....              ....+..+ ..+.++.|+ +++..++++
T Consensus       572 ~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------------~~~~~~~~-~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------------SIGTIKTK-ANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------------EEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence            37999999999997 78899999999999999998765              44555543 578899995 568899999


Q ss_pred             cCCCcEEEEeCCCCC
Q psy11100         89 DETGLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~  103 (110)
                      +.|+.|++||+++++
T Consensus       637 s~dg~I~iwD~~~~~  651 (793)
T PLN00181        637 SADHKVYYYDLRNPK  651 (793)
T ss_pred             eCCCeEEEEECCCCC
Confidence            999999999998764

>KOG0278|consensus

Probab=99.23  E-value=8.9e-11  Score=72.79  Aligned_cols=76  Identities=24%  Similarity=0.376  Sum_probs=65.2

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      .|.+-.++|+...+++|+.|..++.||..++.              .+..+ ++|-++|.++.|+|+|+..++++.||+|
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI  291 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCc--------------eeeecccCCCCceEEEEECCCCceeeccCCCceE
Confidence            46667789998899999999999999999886              34444 7889999999999999999999999999


Q ss_pred             EEEeCCCCCCh
Q psy11100         95 IVWMLYKCNDD  105 (110)
Q Consensus        95 ~~w~~~~~~~~  105 (110)
                      ++|...-++-.
T Consensus       292 rlWQt~~~~~~  302 (334)
T KOG0278|consen  292 RLWQTTPGKTY  302 (334)
T ss_pred             EEEEecCCCch
Confidence            99987765543

>KOG0772|consensus

Probab=99.23  E-value=3.9e-11  Score=80.36  Aligned_cols=82  Identities=20%  Similarity=0.341  Sum_probs=63.1

Q ss_pred             ccCCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeE
Q psy11100          9 IAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l   85 (110)
                      ...||.+.++|-.|+|+. +.+++++.||++++|++.....   +       .+.+....  +..-.+..++|+|+|.+|
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~---q-------~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS---Q-------LQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh---h-------eeEEeeccCCCcccCceeeecCCCcchh
Confidence            455899999999999974 4578889999999999987651   1       11222211  122356899999999999


Q ss_pred             EEecCCCcEEEEeCC
Q psy11100         86 TSSDETGLIIVWMLY  100 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~  100 (110)
                      +.++.||+|++|+..
T Consensus       333 Aagc~DGSIQ~W~~~  347 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKG  347 (641)
T ss_pred             hhcccCCceeeeecC
Confidence            999999999999974

>KOG1539|consensus

Probab=99.23  E-value=5.6e-11  Score=83.01  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCccc--------------------ccc--------cceeee
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA--------------------AAN--------VNLAMN   63 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~--------~~~~~~   63 (110)
                      .|.++|+.++...-++.+++++.+|-+++||.....-. +..+                    -..        ......
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv  569 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV  569 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCccee-eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence            68899999999888899999999999999998765300 0000                    000        011125


Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.+.+|++.+++++|||+|+++++++.|++|++||+.++..++-
T Consensus       570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence            56788999999999999999999999999999999999887653

>KOG0313|consensus

Probab=99.22  E-value=5.6e-11  Score=76.91  Aligned_cols=79  Identities=25%  Similarity=0.484  Sum_probs=68.7

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~   92 (110)
                      ...+.|+.++|...+|++|+.|..+++||.+.+.   +.        ...+++-+|.+.|..+.|+|...+ |++++.|+
T Consensus       300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs--------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GS--------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             CcceeEeecccccceeeecCCCCceeecCCCCCC---Cc--------eeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            3568889999999999999999999999998765   11        256788899999999999998877 99999999


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      ++++||+++.+
T Consensus       369 t~klWDvRS~k  379 (423)
T KOG0313|consen  369 TVKLWDVRSTK  379 (423)
T ss_pred             eEEEEEeccCC
Confidence            99999999765

>KOG0293|consensus

Probab=99.21  E-value=9.2e-11  Score=76.85  Aligned_cols=81  Identities=21%  Similarity=0.403  Sum_probs=68.1

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l   85 (110)
                      ++...+|..+|.-+.|+||.+++++++.+..+.+||+.++.              ..... .++...+.+.+|.|||..+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--------------~~~~y~~~~~~S~~sc~W~pDg~~~  327 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--------------LRHLYPSGLGFSVSSCAWCPDGFRF  327 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--------------hhhhcccCcCCCcceeEEccCCcee
Confidence            34556899999999999999999999989999999999886              22222 2245678999999999999


Q ss_pred             EEecCCCcEEEEeCCC
Q psy11100         86 TSSDETGLIIVWMLYK  101 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~  101 (110)
                      ++|+.|.++..||+..
T Consensus       328 V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  328 VTGSPDRTIIMWDLDG  343 (519)
T ss_pred             EecCCCCcEEEecCCc
Confidence            9999999999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=3.1e-10  Score=68.96  Aligned_cols=76  Identities=12%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +...+..+.|+|+|++++.++.+   |.+.+||.....              .+...  +...+..++|+|+|++++++.
T Consensus        99 ~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--------------~i~~~--~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   99 GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--------------KISTF--EHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--------------Eeecc--ccCcEEEEEEcCCCCEEEEEE
Confidence            45678899999999999887644   569999999765              33332  234478999999999988876


Q ss_pred             ------CCCcEEEEeCCCCCCh
Q psy11100         90 ------ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        90 ------~~~~i~~w~~~~~~~~  105 (110)
                            .|+.+++|++. |+.+
T Consensus       163 t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             eccceeccccEEEEEec-CeEe
Confidence                  36789999985 4433

>KOG0277|consensus

Probab=99.19  E-value=1.5e-10  Score=71.80  Aligned_cols=76  Identities=14%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEec
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~   89 (110)
                      .|..+|.++.|++- ++.+++++-|++|++|+-....              .++++.+|...|...+|||. ...+++++
T Consensus       102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen  102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             hhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------------ceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            68999999999994 5667788999999999998776              67899999999999999996 55699999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .|+++++||++.
T Consensus       168 gd~~l~lwdvr~  179 (311)
T KOG0277|consen  168 GDGTLRLWDVRS  179 (311)
T ss_pred             CCceEEEEEecC
Confidence            999999999874

>KOG0277|consensus

Probab=99.19  E-value=3.2e-10  Score=70.40  Aligned_cols=81  Identities=15%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~   86 (110)
                      ...+|..-|...+|+|. +.++++++.|+.+++||++...              ....+..|..++.++.|+.- ...++
T Consensus       142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------------k~~~i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------------KFMSIEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------------ceeEEEeccceeEeecccccCCcEEE
Confidence            34479999999999995 7889999999999999998764              23448889899999999974 55699


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +++.|+.|++||+++-+
T Consensus       208 Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             ecCCCceEEEEehhhcc
Confidence            99999999999998643

>KOG1446|consensus

Probab=99.19  E-value=6.4e-10  Score=70.39  Aligned_cols=82  Identities=13%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC---eEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK---VRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~   88 (110)
                      +...+.+.+.|+|||+.++.+...+.+.+.|...+.              ...++..+...   -....|+|+++++.++
T Consensus       185 ~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  185 NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--------------EeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            456788999999999999999999999999999887              45555554322   3678899999999999


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.||+|.+|++++|..+..
T Consensus       251 s~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeE
Confidence            9999999999998876543

>KOG0646|consensus

Probab=99.18  E-value=4.4e-10  Score=74.24  Aligned_cols=46  Identities=24%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             EEeeccCC--CeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         64 QSLQGHSG--KVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        64 ~~~~~~~~--~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ..+.+|.+  .|+|++.|-||..|++|+.||.+.+||+.+.+.++.+-
T Consensus       269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            34556666  89999999999999999999999999999888887653

>KOG0283|consensus

Probab=99.18  E-value=1e-10  Score=81.20  Aligned_cols=79  Identities=13%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .|...|+|++|+| |.+++++|+.|+.++||++....               ......-...|+.+++.|+|+..+.|+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---------------Vv~W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---------------VVDWNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---------------eEeehhhhhhheeEEeccCCceEEEEEe
Confidence            6999999999999 68899999999999999999765               2223333478999999999999999999


Q ss_pred             CCcEEEEeCCCCCCh
Q psy11100         91 TGLIIVWMLYKCNDD  105 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~  105 (110)
                      +|..++|+.+..+..
T Consensus       472 ~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  472 NGYCRFYDTEGLKLV  486 (712)
T ss_pred             ccEEEEEEccCCeEE
Confidence            999999998766543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.17  E-value=5.8e-10  Score=67.79  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             CCCCceEEEEEecCCCEEE--EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIA--VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ...++|.+++|+|+|+.++  .|..+..+.+||+.. .              .+..+  ....++.+.|||+|++++.++
T Consensus        57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~--------------~i~~~--~~~~~n~i~wsP~G~~l~~~g  119 (194)
T PF08662_consen   57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-K--------------KIFSF--GTQPRNTISWSPDGRFLVLAG  119 (194)
T ss_pred             cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-c--------------EeEee--cCCCceEEEECCCCCEEEEEE
Confidence            4556799999999998754  345667899999973 2              33444  356778999999999988876


Q ss_pred             C---CCcEEEEeCCCCCChhhh
Q psy11100         90 E---TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~---~~~i~~w~~~~~~~~~~~  108 (110)
                      .   .|.|.+||.++...+.+.
T Consensus       120 ~~n~~G~l~~wd~~~~~~i~~~  141 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRKKKKISTF  141 (194)
T ss_pred             ccCCCcEEEEEECCCCEEeecc
Confidence            4   467999999977665443

>KOG0771|consensus

Probab=99.17  E-value=1.1e-10  Score=76.10  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEE
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW   97 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w   97 (110)
                      .+++|+++|..+++++.||.+|+|+.....              .+.....|...|.++.|+|||+++++.+.+ ..++|
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch--------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence            678999999999999999999999988765              445566788999999999999999999999 99999


Q ss_pred             eCCCCCCh
Q psy11100         98 MLYKCNDD  105 (110)
Q Consensus        98 ~~~~~~~~  105 (110)
                      +..+|..+
T Consensus       213 ~~~~g~~~  220 (398)
T KOG0771|consen  213 SVNTGAAL  220 (398)
T ss_pred             EeccCchh
Confidence            99998543

>KOG0281|consensus

Probab=99.17  E-value=6.1e-11  Score=76.45  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...||.+.|..+.|+  .+++++++.|.++++|+..+..              ...++.+|...|.|++.  .|.++++
T Consensus       314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e--------------fvRtl~gHkRGIAClQY--r~rlvVS  375 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE--------------FVRTLNGHKRGIACLQY--RDRLVVS  375 (499)
T ss_pred             HHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee--------------eehhhhcccccceehhc--cCeEEEe
Confidence            3445788888887764  5588888888888888888776              66777888777777765  6777888


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      |+.|.+|++||++.|..++-+
T Consensus       376 GSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             cCCCceEEEEeccccHHHHHH
Confidence            888888888888888776543

>KOG0308|consensus

Probab=99.16  E-value=2.5e-10  Score=78.18  Aligned_cols=84  Identities=25%  Similarity=0.330  Sum_probs=76.3

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .++...|.+++-++.|..+++|+..+.+++||-....              .++.+.+|+..|..+..+++|..+++++.
T Consensus       168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~--------------kimkLrGHTdNVr~ll~~dDGt~~ls~sS  233 (735)
T KOG0308|consen  168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK--------------KIMKLRGHTDNVRVLLVNDDGTRLLSASS  233 (735)
T ss_pred             CCCccceeeeecCCcceEEEecCcccceEEecccccc--------------ceeeeeccccceEEEEEcCCCCeEeecCC
Confidence            3788899999999999999999999999999999876              56788899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      ||+|++||+...+++.++
T Consensus       234 DgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  234 DGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             CceEEeeeccccceeeeE
Confidence            999999999988776543

>KOG3914|consensus

Probab=99.15  E-value=1.4e-10  Score=75.24  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      +...+|-+-+.+++++||++.++++..|+.|++-......              .+. -+.+|+..|+.++.-++ ..|+
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------------~IesfclGH~eFVS~isl~~~-~~Ll  209 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------------VIESFCLGHKEFVSTISLTDN-YLLL  209 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------------chhhhccccHhheeeeeeccC-ceee
Confidence            4456899999999999999999999999999997766543              222 24579999999998664 4589


Q ss_pred             EecCCCcEEEEeCCCCCChhhh
Q psy11100         87 SSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      |+++|++|++||+.+|+.++++
T Consensus       210 S~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ecCCCCcEEEEecccCCccccc
Confidence            9999999999999999987653

>KOG2111|consensus

Probab=99.15  E-value=1.2e-09  Score=69.51  Aligned_cols=78  Identities=15%  Similarity=0.380  Sum_probs=67.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .|.+.|.|++++.+|..+|+++..|+ +|+||...+.              .+..+..  ....+.+++|||++.+++.+
T Consensus       179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~--------------~l~E~RRG~d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT--------------LLQELRRGVDRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc--------------EeeeeecCCchheEEEEEeCCCccEEEEE
Confidence            79999999999999999999999986 6899999887              4555543  34679999999999999999


Q ss_pred             cCCCcEEEEeCCCCC
Q psy11100         89 DETGLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~  103 (110)
                      +..|+|.++.++...
T Consensus       245 SdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  245 SDKGTLHIFSLRDTE  259 (346)
T ss_pred             cCCCeEEEEEeecCC
Confidence            999999999887644

>KOG0267|consensus

Probab=99.15  E-value=3.6e-11  Score=82.98  Aligned_cols=82  Identities=22%  Similarity=0.432  Sum_probs=73.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+.+|...|.++.|+|+|++++.++.|+.++|||+..+.              .+..+..|.+.+..+.|+|..-++++|
T Consensus       149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--------------~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--------------LSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             eecCCcceeEEEeecCCCceeeccCCcceeeeecccccc--------------cccccccccccccccccCchhhhhccC
Confidence            444688889999999999999999999999999999887              677889999999999999999899999


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.|.++++||+++-..
T Consensus       215 s~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  215 SSDRTVRFWDLETFEV  230 (825)
T ss_pred             CCCceeeeeccceeEE
Confidence            9999999999985443

>KOG0274|consensus

Probab=99.15  E-value=4.1e-10  Score=77.41  Aligned_cols=80  Identities=30%  Similarity=0.434  Sum_probs=71.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|++.|.++..+  +..+++|+.|+.|++||+....              ++..+.+|...|.++.+... ..+++++.|
T Consensus       329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~--------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D  391 (537)
T KOG0274|consen  329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK--------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLD  391 (537)
T ss_pred             cccccEEEEEec--CCEEEEEecCceEEEEEhhhce--------------eeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence            599999999887  8889999999999999999876              88999999999999988554 789999999


Q ss_pred             CcEEEEeCCCC-CChhhh
Q psy11100         92 GLIIVWMLYKC-NDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~-~~~~~~  108 (110)
                      ++|++||+++. +.+..+
T Consensus       392 ~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             cceEeecCCchhhhhhhh
Confidence            99999999998 666554

>KOG2096|consensus

Probab=99.15  E-value=2.4e-10  Score=72.96  Aligned_cols=37  Identities=11%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCC
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~   45 (110)
                      ...+|...|++++|+.||..|++.+.|+.+++|+++.
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D  117 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD  117 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch
Confidence            4458999999999999999999999999999999754

>KOG1539|consensus

Probab=99.15  E-value=4.6e-10  Score=78.62  Aligned_cols=75  Identities=12%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|+++++++.|||||+++++++.|+++++||+.++.              .+-.+. -......+.|||+|.+|+++
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~--------------lID~~~-vd~~~~sls~SPngD~LAT~  635 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT--------------LIDGLL-VDSPCTSLSFSPNGDFLATV  635 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc--------------eeeeEe-cCCcceeeEECCCCCEEEEE
Confidence            445899999999999999999999999999999999886              333332 24667799999999999999


Q ss_pred             cCC-CcEEEEe
Q psy11100         89 DET-GLIIVWM   98 (110)
Q Consensus        89 ~~~-~~i~~w~   98 (110)
                      -.| .-|++|-
T Consensus       636 Hvd~~gIylWs  646 (910)
T KOG1539|consen  636 HVDQNGIYLWS  646 (910)
T ss_pred             EecCceEEEEE
Confidence            887 5688994

>KOG0299|consensus

Probab=99.14  E-value=2.4e-10  Score=75.37  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...+.+++.++||+++++|..|..+.||+..+..              ....+.+|.+.|.+++|-....-+.+++.|
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~D  265 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--------------HVKVFKGHRGAVSSLAFRKGTSELYSASAD  265 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--------------hhhcccccccceeeeeeecCccceeeeecC
Confidence            788899999999999999999999999999999887              667789999999999997766669999999


Q ss_pred             CcEEEEeCCCCCChhh
Q psy11100         92 GLIIVWMLYKCNDDDE  107 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~  107 (110)
                      .++.+|++..-..+.+
T Consensus       266 rsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  266 RSVKVWSIDQLSYVET  281 (479)
T ss_pred             CceEEEehhHhHHHHH
Confidence            9999999887665544

>KOG2110|consensus

Probab=99.14  E-value=7.7e-10  Score=71.48  Aligned_cols=84  Identities=18%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             CCCceEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +..++.+++.++.+.+++.-+  ..|.|.+||.....              ....+..|.+.+.+++|+++|.++|+++.
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------------~v~~I~aH~~~lAalafs~~G~llATASe  193 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------------PVNTINAHKGPLAALAFSPDGTLLATASE  193 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------------eeeEEEecCCceeEEEECCCCCEEEEecc
Confidence            444566666666677877643  35889999999876              67888999999999999999999999999


Q ss_pred             CCc-EEEEeCCCCCChhhhhC
Q psy11100         91 TGL-IIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        91 ~~~-i~~w~~~~~~~~~~~~~  110 (110)
                      .|+ |+|+.+.+|+.+-|+||
T Consensus       194 KGTVIRVf~v~~G~kl~eFRR  214 (391)
T KOG2110|consen  194 KGTVIRVFSVPEGQKLYEFRR  214 (391)
T ss_pred             CceEEEEEEcCCccEeeeeeC
Confidence            987 67999999999999986

>KOG0269|consensus

Probab=99.13  E-value=2.3e-10  Score=79.51  Aligned_cols=76  Identities=24%  Similarity=0.570  Sum_probs=60.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec-
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD-   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~-   89 (110)
                      .|+++|.|+.|+|++.+||+|+.|+.++||+......   .         ...++ .-...|..++|-|.-+. |++++ 
T Consensus       218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~---~---------~~~tI-nTiapv~rVkWRP~~~~hLAtcsm  284 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA---K---------PKHTI-NTIAPVGRVKWRPARSYHLATCSM  284 (839)
T ss_pred             cccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---c---------ceeEE-eecceeeeeeeccCccchhhhhhc
Confidence            7999999999999999999999999999999986540   0         11222 12467899999998665 77776 


Q ss_pred             -CCCcEEEEeCC
Q psy11100         90 -ETGLIIVWMLY  100 (110)
Q Consensus        90 -~~~~i~~w~~~  100 (110)
                       .|..|.|||++
T Consensus       285 v~dtsV~VWDvr  296 (839)
T KOG0269|consen  285 VVDTSVHVWDVR  296 (839)
T ss_pred             cccceEEEEeec
Confidence             58899999986

>KOG0306|consensus

Probab=99.13  E-value=2.9e-10  Score=79.01  Aligned_cols=85  Identities=18%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      -..+|...|.++.|.|+...+.+++.|+.++-||...-.              .++.+.+|...|.+++.+|+|.+++++
T Consensus       587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--------------~iq~L~~H~~ev~cLav~~~G~~vvs~  652 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--------------EIQKLDGHHSEVWCLAVSPNGSFVVSS  652 (888)
T ss_pred             hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh--------------hheeeccchheeeeeEEcCCCCeEEec
Confidence            345799999999999999999999999999999998776              778999999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      ++|.+|++|.-.....+.|
T Consensus       653 shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  653 SHDKSIRLWERTDEILILE  671 (888)
T ss_pred             cCCceeEeeeccCcceeee
Confidence            9999999998776555443

>KOG0281|consensus

Probab=99.12  E-value=3.2e-10  Score=73.20  Aligned_cols=79  Identities=22%  Similarity=0.354  Sum_probs=64.3

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .++..||++.|.|+.|  +.+.+++|+.|.+|++||..++.              ++.++-+|...|..+.|+.  .+++
T Consensus       230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge--------------~l~tlihHceaVLhlrf~n--g~mv  291 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE--------------PLNTLIHHCEAVLHLRFSN--GYMV  291 (499)
T ss_pred             HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc--------------hhhHHhhhcceeEEEEEeC--CEEE
Confidence            3456689999988877  45588999999999999999887              6777778888898998854  4678


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +++.|.++.+||+....
T Consensus       292 tcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  292 TCSKDRSIAVWDMASPT  308 (499)
T ss_pred             EecCCceeEEEeccCch
Confidence            88889999999987665

>KOG0646|consensus

Probab=99.12  E-value=2.3e-10  Score=75.55  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=67.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .++|.+++-+|+|.+++.|...|.+++|.+.++.              .+..+..|...|.++.|+-||.+|++++.||.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~  146 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA  146 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecccc--------------HHHHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence            4679999999999999999899999999999997              67778899999999999999999999999999


Q ss_pred             EEEEeCC
Q psy11100         94 IIVWMLY  100 (110)
Q Consensus        94 i~~w~~~  100 (110)
                      |.+|.+-
T Consensus       147 V~vW~l~  153 (476)
T KOG0646|consen  147 VLVWLLT  153 (476)
T ss_pred             EEEEEEE
Confidence            9999753

>KOG0288|consensus

Probab=99.11  E-value=4e-10  Score=73.68  Aligned_cols=69  Identities=20%  Similarity=0.440  Sum_probs=59.5

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC--CeEEEEEcCCCCeEEEecCCCc
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG--KVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ..+.+.|||++.++++|+.||.|++|++.+++              +...+...+.  .|.+++|+|.|..+++++.++.
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK--------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK--------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCce--------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence            36778999999999999999999999999987              4455554333  6999999999999999999999


Q ss_pred             EEEEe
Q psy11100         94 IIVWM   98 (110)
Q Consensus        94 i~~w~   98 (110)
                      +.+|.
T Consensus       455 v~lW~  459 (459)
T KOG0288|consen  455 VTLWT  459 (459)
T ss_pred             eEecC
Confidence            99984

>KOG0310|consensus

Probab=99.10  E-value=1.3e-09  Score=72.45  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|+.+|.|.+|+|. +..+++|+.||.|++||.....              ....--.|..+|-.+.+=|.|..+++++
T Consensus       150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--------------~~v~elnhg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--------------SRVVELNHGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--------------ceeEEecCCCceeeEEEcCCCCEEEEcC
Confidence            389999999999996 5689999999999999999874              1122346888999999999999999887


Q ss_pred             CCCcEEEEeCCCCCCh
Q psy11100         90 ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~  105 (110)
                       .+.+++||+.+|...
T Consensus       216 -Gn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQL  230 (487)
T ss_pred             -CCeEEEEEecCCcee
Confidence             568999999965543

>KOG0643|consensus

Probab=99.10  E-value=2e-09  Score=67.30  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----Cccc------------------------------
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----GQVA------------------------------   54 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~~~------------------------------   54 (110)
                      +.+|++.|.|+..+-+...+++|+.|.++++||...+....     ...+                              
T Consensus        48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence            45899999999999999999999999999999998774210     0000                              


Q ss_pred             c----cccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100         55 A----ANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        55 ~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +    ....-.+...+..+.+.+..+-|.|.++.++++..+|.|..||.++|..+.
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV  183 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence            0    000111133444456778899999999999999999999999999985443

>KOG4283|consensus

Probab=99.09  E-value=8.1e-10  Score=70.01  Aligned_cols=75  Identities=25%  Similarity=0.432  Sum_probs=64.2

Q ss_pred             CCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         14 NTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        14 ~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      .+.|..-+++|-   -.++++|..+-.|++.|+.++.              ...++.+|.+.|..+.|+|..++ |++++
T Consensus       143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--------------~sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--------------FSHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------------ceeeeccccCceEEEEeccCceeEEEecC
Confidence            356777778883   3357788888899999999987              67889999999999999999888 88999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .||.+++||++.-
T Consensus       209 aDg~irlWDiRra  221 (397)
T KOG4283|consen  209 ADGAIRLWDIRRA  221 (397)
T ss_pred             CCceEEEEEeecc
Confidence            9999999999854

>KOG2110|consensus

Probab=99.08  E-value=3e-09  Score=68.80  Aligned_cols=78  Identities=14%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~   88 (110)
                      .|.+.+.+++|+++|.+||+++..|+ +|++.+..+.              .+..+..-  -..|.+++|+|++++|++.
T Consensus       171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            69999999999999999999999886 6899998876              45555432  2457899999999999999


Q ss_pred             cCCCcEEEEeCCCCC
Q psy11100         89 DETGLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~  103 (110)
                      +..++|.++.+.+-.
T Consensus       237 S~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVS  251 (391)
T ss_pred             cCCCeEEEEEecccc
Confidence            999999999876543

>KOG0313|consensus

Probab=99.07  E-value=1.6e-09  Score=70.31  Aligned_cols=96  Identities=19%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-----CC-----ccc-ccccceeeeEEeeccCCCeEEEEEcC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-----TG-----QVA-AANVNLAMNQSLQGHSGKVRAIIWNE   80 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-----~~-----~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~   80 (110)
                      ||...|.++...++|..+++|+-|..+++|+.......     ..     +.+ ....-..++.++.+|...|..+.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            89999999999999999999999999999993321111     00     000 11112225678899999999999988


Q ss_pred             CCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         81 QYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                       ...+.+++-|.+|+.||+.++..+.++
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeee
Confidence             667889999999999999999877654

>KOG0274|consensus

Probab=99.07  E-value=2.8e-09  Score=73.39  Aligned_cols=82  Identities=23%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.++++...+.++++|+.|.++++||..++.              +...+.+|.+.+.++..  ....+.+++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l~gh~stv~~~~~--~~~~~~sgs  308 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE--------------CTHSLQGHTSSVRCLTI--DPFLLVSGS  308 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc--------------EEEEecCCCceEEEEEc--cCceEeecc
Confidence            45899999999998878899999999999999988775              55666666666655543  334455566


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|.+|++|++.++..+..
T Consensus       309 ~D~tVkVW~v~n~~~l~l  326 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNL  326 (537)
T ss_pred             CCceEEEEeccCcceEEE
Confidence            666666666666655443

>KOG0642|consensus

Probab=99.07  E-value=1.8e-09  Score=72.89  Aligned_cols=89  Identities=18%  Similarity=0.316  Sum_probs=72.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.++|.|+..+++++.+.+|+.||+|+.|++....++....+    ......++.+|.+.|..+++|+....|++++.|
T Consensus       342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d----p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD----PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC----cchhccceeccccceeeeeecccccceeeecCC
Confidence            7999999999999999999999999999998874332111110    111456788999999999999998889999999


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      |+++.|+.....-
T Consensus       418 gTvr~w~~~~~~~  430 (577)
T KOG0642|consen  418 GTVRLWEPTEESP  430 (577)
T ss_pred             ceEEeeccCCcCc
Confidence            9999999876543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.06  E-value=1.9e-09  Score=48.82  Aligned_cols=37  Identities=30%  Similarity=0.585  Sum_probs=35.0

Q ss_pred             eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100         62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM   98 (110)
Q Consensus        62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~   98 (110)
                      +...+.+|.+.|.+++|+|++..+++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0322|consensus

Probab=99.06  E-value=6.1e-10  Score=69.47  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      -.|..+..-||++.+|+++-|+.+++|+-.+..              ++..++.|+..|++++|+|+.+.++.++.|+.|
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--------------pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--------------PLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             CCccceEEccCCcEEeecccCCcEEEEEeccCC--------------chhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence            457778899999999999999999999999887              778899999999999999999999999999999


Q ss_pred             EEEeC
Q psy11100         95 IVWML   99 (110)
Q Consensus        95 ~~w~~   99 (110)
                      -+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG1332|consensus

Probab=99.05  E-value=1.2e-09  Score=67.62  Aligned_cols=88  Identities=19%  Similarity=0.290  Sum_probs=74.5

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCeE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEKL   85 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l   85 (110)
                      ++...|...|......--|..|++++.|+.|+|+......           +...+.++.+|.++|..++|..  .|.+|
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iL   73 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----------QSKLLAELTGHSGPVWKVAWAHPKFGTIL   73 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----------CceeeeEecCCCCCeeEEeecccccCcEe
Confidence            4566788888887777779999999999999999998764           1125778999999999999965  79999


Q ss_pred             EEecCCCcEEEEeCCCCCChh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +|++.|+.+.+|.-.++++..
T Consensus        74 AScsYDgkVIiWke~~g~w~k   94 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTK   94 (299)
T ss_pred             eEeecCceEEEEecCCCchhh
Confidence            999999999999999987643

>KOG1332|consensus

Probab=99.04  E-value=1.7e-09  Score=66.89  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEE-ec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEE
Q psy11100         11 IPNNTKVNCLAW-HQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLT   86 (110)
Q Consensus        11 ~~h~~~v~~~~~-~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~   86 (110)
                      .+|.++|..++| +| -|.+|++++.||.|.+|.-..+.            +.-......|...|++++|.|.  |-.|+
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~------------w~k~~e~~~h~~SVNsV~wapheygl~La  120 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR------------WTKAYEHAAHSASVNSVAWAPHEYGLLLA  120 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc------------hhhhhhhhhhcccceeecccccccceEEE
Confidence            389999999999 55 59999999999999999888764            1123445678899999999986  44599


Q ss_pred             EecCCCcEEEEeCCCC
Q psy11100         87 SSDETGLIIVWMLYKC  102 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~  102 (110)
                      +++.||.|.+.++...
T Consensus       121 casSDG~vsvl~~~~~  136 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSS  136 (299)
T ss_pred             EeeCCCcEEEEEEcCC
Confidence            9999999999988754

>KOG0650|consensus

Probab=99.04  E-value=3.6e-09  Score=72.23  Aligned_cols=80  Identities=16%  Similarity=0.327  Sum_probs=64.4

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~   86 (110)
                      .++.+|++.|.++...|.|.+|++|+.||+|+||.+.++.              ++.++.- .+.|.+++|+|.+.. ++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--------------cvr~~~~-d~~I~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--------------CVRTVQF-DSEIRSVAWNPLSDLCVL  458 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--------------EEEEEee-cceeEEEEecCCCCceeE
Confidence            3456899999999999999999999999999999999987              5555543 468999999998887 55


Q ss_pred             EecCCCcEEEEeCCCC
Q psy11100         87 SSDETGLIIVWMLYKC  102 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~  102 (110)
                      .++....+.+.+..-|
T Consensus       459 AvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  459 AVAVGECVLIVNPIFG  474 (733)
T ss_pred             EEEecCceEEeCcccc
Confidence            5555555766666544

>KOG0270|consensus

Probab=99.03  E-value=4.7e-10  Score=73.81  Aligned_cols=78  Identities=27%  Similarity=0.397  Sum_probs=68.5

Q ss_pred             cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      ..+|+..|..++|+.. ...|++|+.|.+|++||+..+.              +...+..|...|.+++|+|... .+++
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~s~~~~~k~Vq~l~wh~~~p~~LLs  304 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKSSITHHGKKVQTLEWHPYEPSVLLS  304 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cceehhhcCCceeEEEecCCCceEEEe
Confidence            3479999999999886 5679999999999999999987              6677888999999999999754 5999


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      |+.|+++.+.|.+.
T Consensus       305 Gs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  305 GSYDGTVALKDCRD  318 (463)
T ss_pred             ccccceEEeeeccC
Confidence            99999999999984

>KOG1310|consensus

Probab=99.03  E-value=2.2e-09  Score=72.85  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=67.2

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCC--CCeEEE
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQ--YEKLTS   87 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s   87 (110)
                      .||++-|.|+.|+.+|.+|++|+.|-.+.|||....+              .+..+ .+|...|.++.|-|.  .+.+++
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~s  112 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVLS  112 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEEe
Confidence            4899999999999999999999999999999999765              34444 479999999999884  456899


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      +..|..|+++|+..
T Consensus       113 gAgDk~i~lfdl~~  126 (758)
T KOG1310|consen  113 GAGDKLIKLFDLDS  126 (758)
T ss_pred             ccCcceEEEEeccc
Confidence            99999999999874

>KOG0306|consensus

Probab=99.02  E-value=1.2e-09  Score=76.10  Aligned_cols=81  Identities=17%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ||.=+|.|+..+||+..+++|+.|.+|++|-++-+.              +-..+-.|.+.|.++.|-|+...+.+++.|
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccch--------------hhhhhhcccCceeEEEEcccceeEEEecCc
Confidence            899999999999999999999999999999999877              667788899999999999999999999999


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      +.++.||-.+-..+.
T Consensus       614 ~kvKqWDg~kFe~iq  628 (888)
T KOG0306|consen  614 GKVKQWDGEKFEEIQ  628 (888)
T ss_pred             ceEEeechhhhhhhe
Confidence            999999876544443

>KOG0268|consensus

Probab=99.02  E-value=8.1e-10  Score=71.45  Aligned_cols=76  Identities=12%  Similarity=0.248  Sum_probs=64.5

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC---CCeEEEEEcCCCCeE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS---GKVRAIIWNEQYEKL   85 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l   85 (110)
                      ...+|.+.|.++.|+|.|+-+++|+.|.+++||....+.              . ... .|+   +.|.++.||.|.+++
T Consensus       267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~--------------S-Rdi-YhtkRMq~V~~Vk~S~Dskyi  330 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH--------------S-RDI-YHTKRMQHVFCVKYSMDSKYI  330 (433)
T ss_pred             hhcccceeEEEeccCCCcchhccccccceEEEeecCCCc--------------c-hhh-hhHhhhheeeEEEEeccccEE
Confidence            445799999999999999999999999999999998775              1 111 222   568999999999999


Q ss_pred             EEecCCCcEEEEeCC
Q psy11100         86 TSSDETGLIIVWMLY  100 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~  100 (110)
                      +||++|+.|++|...
T Consensus       331 ~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  331 ISGSDDGNVRLWKAK  345 (433)
T ss_pred             EecCCCcceeeeecc
Confidence            999999999999754

>KOG0294|consensus

Probab=99.02  E-value=3.4e-09  Score=67.50  Aligned_cols=74  Identities=22%  Similarity=0.405  Sum_probs=65.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC--eEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE--KLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~   89 (110)
                      .|.+.+++++.  ++.++++|+.|..+++||.....              .+..+..|.+.|+++.|.+.-.  +|+++.
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~--------------qlg~ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK--------------QLGILLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccchh--------------hhcceeccccceEEEEecCCcchhheeeec
Confidence            68899999988  58999999999999999999876              4567788999999999988765  799999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .||.|.+|+..+
T Consensus       105 dDG~i~iw~~~~  116 (362)
T KOG0294|consen  105 DDGHIIIWRVGS  116 (362)
T ss_pred             CCCcEEEEEcCC
Confidence            999999998754

>KOG2445|consensus

Probab=99.01  E-value=3.8e-09  Score=67.17  Aligned_cols=88  Identities=19%  Similarity=0.453  Sum_probs=68.9

Q ss_pred             CCCCceEEEEEecC-CC---EEEEEecCCcEEEEEcCCCCCc---CCcc---cccccceeeeEEeeccCCCeEEEEEcCC
Q psy11100         12 PNNTKVNCLAWHQN-QG---WIAVGGDDGLLKVLKLDTGKES---TGQV---AAANVNLAMNQSLQGHSGKVRAIIWNEQ   81 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~---~l~~~~~~~~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~   81 (110)
                      +|+.+|.+++|.|. |+   .||+++.|| |+||.+......   +...   ....-+++.+..+..|.++|..+.|+-.
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            79999999999996 43   589999999 999999854311   0011   1223445556677889999999999999


Q ss_pred             CCeEEEecCCCcEEEEeCC
Q psy11100         82 YEKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        82 ~~~l~s~~~~~~i~~w~~~  100 (110)
                      |..|+|.+.||.+++|...
T Consensus       300 GtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 GTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEeecCCCceeeehhhh
Confidence            9999999999999999643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.00  E-value=4.4e-09  Score=71.46  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .++..+.+.+++++|+..+++.|+.||++.+||.....                .......-....++|+|+|..++.++
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------------t~~~ka~~~P~~iaWHp~gai~~V~s  318 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------------TLLAKAEFIPTLIAWHPDGAIFVVGS  318 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------------eeeeeecccceEEEEcCCCcEEEEEc
Confidence            34678899999999999999999999999999998764                12222234467899999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      ..|.+.+||..-+....+
T Consensus       319 ~qGelQ~FD~ALspi~~q  336 (545)
T PF11768_consen  319 EQGELQCFDMALSPIKMQ  336 (545)
T ss_pred             CCceEEEEEeecCcccee
Confidence            999999999876655443

>KOG0278|consensus

Probab=99.00  E-value=2e-10  Score=71.28  Aligned_cols=84  Identities=23%  Similarity=0.504  Sum_probs=72.7

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +.|.--|.+++|+.|.+.|++|+.+.-+++||+....             .+...+.+|.+.|..+.|-...+-++|+..
T Consensus        97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-------------App~E~~ghtg~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------------APPKEISGHTGGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             hhhhheeeeEEecccchhhhccchHHHhhhhhccCCC-------------CCchhhcCCCCcceeEEEeccCceEEeecc
Confidence            3577789999999999999999999999999998765             134667889999999999888888888899


Q ss_pred             CCcEEEEeCCCCCChhh
Q psy11100         91 TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~  107 (110)
                      |++|++||.+++..+..
T Consensus       164 d~tVRLWD~rTgt~v~s  180 (334)
T KOG0278|consen  164 DKTVRLWDHRTGTEVQS  180 (334)
T ss_pred             CCceEEEEeccCcEEEE
Confidence            99999999999876544

>KOG1063|consensus

Probab=99.00  E-value=2.4e-09  Score=73.85  Aligned_cols=83  Identities=11%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.-.|+.++|+|||++|++.+.|..+.+|.......   ...       .....+.|+.-|....|+|++..|++++
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~---~e~-------~fa~~k~HtRIIWdcsW~pde~~FaTaS  637 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK---DEF-------RFACLKAHTRIIWDCSWSPDEKYFATAS  637 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc---hhh-------hhccccccceEEEEcccCcccceeEEec
Confidence            347989999999999999999999999999998865430   100       1123567888899999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|.++.+|...++
T Consensus       638 RDK~VkVW~~~~~  650 (764)
T KOG1063|consen  638 RDKKVKVWEEPDL  650 (764)
T ss_pred             CCceEEEEeccCc
Confidence            9999999998877

>KOG0290|consensus

Probab=98.99  E-value=7.1e-09  Score=65.64  Aligned_cols=96  Identities=19%  Similarity=0.328  Sum_probs=72.2

Q ss_pred             eeccCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCc-----CCc-----cc----cc---------------
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKES-----TGQ-----VA----AA---------------   56 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~-----~~~-----~~----~~---------------   56 (110)
                      |.-.+.|..+|..++|..++. .+++.+.||+|++||++....+     ...     ++    ..               
T Consensus       189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V  268 (364)
T KOG0290|consen  189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV  268 (364)
T ss_pred             eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence            566778999999999999754 6788899999999999876433     111     00    00               


Q ss_pred             -----ccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEEEEeCCCC
Q psy11100         57 -----NVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        57 -----~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~~w~~~~~  102 (110)
                           +-...+...+.+|.+.|+.++|.|... ++++++.|....+||+.+-
T Consensus       269 ~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  269 VILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             EEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence                 001112567788999999999999755 5999999999999998764

>KOG1274|consensus

Probab=98.99  E-value=6.1e-09  Score=73.69  Aligned_cols=82  Identities=24%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      .+-++.+++++-+|.+++.|+.|-.|++.+.....              ....+.+|..+|.++.++|.+.+|++.+.||
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccc--------------hheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence            35678899999999999999999999999988776              4578899999999999999999999999999


Q ss_pred             cEEEEeCCCCCChhhh
Q psy11100         93 LIIVWMLYKCNDDDEW  108 (110)
Q Consensus        93 ~i~~w~~~~~~~~~~~  108 (110)
                      .|++|++.++.....|
T Consensus       161 ~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTL  176 (933)
T ss_pred             eEEEEEcccchhhhhc
Confidence            9999999988766554

>KOG0649|consensus

Probab=98.98  E-value=5e-09  Score=64.99  Aligned_cols=78  Identities=19%  Similarity=0.398  Sum_probs=64.5

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      .|+++-..|...-++.++.|+.++-||+..++              .-+.+++|++.+.++.--.....+.+++.||+++
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVR  181 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCE--------------EEEEEcCCcceeeeeeecccCcceeecCCCccEE
Confidence            57888889876656566679999999999998              6688999999999998744444577999999999


Q ss_pred             EEeCCCCCChhh
Q psy11100         96 VWMLYKCNDDDE  107 (110)
Q Consensus        96 ~w~~~~~~~~~~  107 (110)
                      +||.++++.+..
T Consensus       182 vWd~kt~k~v~~  193 (325)
T KOG0649|consen  182 VWDTKTQKHVSM  193 (325)
T ss_pred             EEeccccceeEE
Confidence            999999887543

>KOG0289|consensus

Probab=98.98  E-value=1e-08  Score=67.78  Aligned_cols=83  Identities=12%  Similarity=0.240  Sum_probs=69.2

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~   86 (110)
                      +...|.++|+.+..+|.|.++++++.|+...+.|+..+.              .+......  .-.+.+.+|+|||-.|.
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--------------~lt~vs~~~s~v~~ts~~fHpDgLifg  363 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS--------------QLTVVSDETSDVEYTSAAFHPDGLIFG  363 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc--------------EEEEEeeccccceeEEeeEcCCceEEe
Confidence            445799999999999999999999999999999999886              23322222  23478999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCh
Q psy11100         87 SSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~  105 (110)
                      ++..|+.+++||+.++...
T Consensus       364 tgt~d~~vkiwdlks~~~~  382 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNV  382 (506)
T ss_pred             ccCCCceEEEEEcCCcccc
Confidence            9999999999999887654

>KOG0641|consensus

Probab=98.98  E-value=1.6e-08  Score=62.27  Aligned_cols=90  Identities=16%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..+..|.+++|+|.|.+.+.|+...++++.-.....+. -..+.+...+......-+.|.+.|.|.+|||+|+++++++.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            34567899999999999999999999888765443321 01111111212233444568899999999999999999999


Q ss_pred             CCcEEEEeCCC
Q psy11100         91 TGLIIVWMLYK  101 (110)
Q Consensus        91 ~~~i~~w~~~~  101 (110)
                      |.+|++..++.
T Consensus       110 dk~ik~l~fn~  120 (350)
T KOG0641|consen  110 DKTIKVLPFNA  120 (350)
T ss_pred             CceEEEEeccc
Confidence            99999886654

>KOG0641|consensus

Probab=98.98  E-value=9.9e-09  Score=63.22  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=68.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      +.|.+++..|.|++|++|..|.+-.+||+..++              +++.+..|+..|.++.|||....+++++.|..|
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r--------------~iq~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR--------------MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCc--------------eeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence            578999999999999999999999999999988              889999999999999999999999999999999


Q ss_pred             EEEeCCC
Q psy11100         95 IVWMLYK  101 (110)
Q Consensus        95 ~~w~~~~  101 (110)
                      ++-|+..
T Consensus       298 kltdlqg  304 (350)
T KOG0641|consen  298 KLTDLQG  304 (350)
T ss_pred             EEeeccc
Confidence            9998763

>KOG0308|consensus

Probab=98.97  E-value=7.6e-09  Score=71.13  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=72.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|+..|.++..++||..+++++.||++++||+...+              +++++..|...|..+..+|+=.++.+|+.|
T Consensus       211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr--------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR--------------CLATYIVHKEGVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             ccccceEEEEEcCCCCeEeecCCCceEEeeeccccc--------------eeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence            899999999999999999999999999999999887              788899999999999999998899999999


Q ss_pred             CcEEEEeCCCC
Q psy11100         92 GLIIVWMLYKC  102 (110)
Q Consensus        92 ~~i~~w~~~~~  102 (110)
                      +.|..-|+++-
T Consensus       277 ~~i~~Tdl~n~  287 (735)
T KOG0308|consen  277 GNIYRTDLRNP  287 (735)
T ss_pred             CcEEecccCCc
Confidence            99999998874

>KOG0639|consensus

Probab=98.97  E-value=9.4e-10  Score=73.90  Aligned_cols=103  Identities=16%  Similarity=0.192  Sum_probs=78.0

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----Cccc----cc----------ccceee------
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----GQVA----AA----------NVNLAM------   62 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~~~----~~----------~~~~~~------   62 (110)
                      +-..+|+..+.|+.+++||..|.+|+.|++|+.||+..+....     ++..    -+          ..+.+.      
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence            3445899999999999999999999999999999998775321     0000    00          011111      


Q ss_pred             -eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhhC
Q psy11100         63 -NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        63 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~~  110 (110)
                       ...+.-|...|.++.|++.|+++++.+.|..+..|...-|..+.+.|+
T Consensus       625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE  673 (705)
T KOG0639|consen  625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  673 (705)
T ss_pred             cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence             223444678899999999999999999999999999988888777654

>KOG1007|consensus

Probab=98.97  E-value=3.4e-09  Score=67.02  Aligned_cols=82  Identities=22%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             ccCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~   86 (110)
                      |...|...|..+.|+|+.+ .|++++.||.|++||.+...             .+.+.+.+|...|.+++|+|. .++++
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------------~pv~el~~HsHWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------------FPVQELPGHSHWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------------ccccccCCCceEEEEEEecCccceEEE
Confidence            4457878899999999865 58999999999999999765             256888999999999999997 45588


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +++.|..+.+|...+-.
T Consensus       276 s~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  276 SGGSDSAVNLSCASSVS  292 (370)
T ss_pred             ecCCCceeEEEeccccc
Confidence            99999999999865443

>KOG1963|consensus

Probab=98.97  E-value=5.1e-09  Score=73.49  Aligned_cols=86  Identities=20%  Similarity=0.401  Sum_probs=73.2

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      +++...|+-.++|.++||++++++++..||.|.+|.-... .+   .        ...+.++-|...|.++.|+++|..+
T Consensus       198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~---~--------~t~t~lHWH~~~V~~L~fS~~G~~L  266 (792)
T KOG1963|consen  198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD---S--------ETCTLLHWHHDEVNSLSFSSDGAYL  266 (792)
T ss_pred             chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc---c--------ccceEEEecccccceeEEecCCceE
Confidence            3455678878999999999999999999999999987652 10   1        1356788899999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                      .||+..+-+-+|.+.++.
T Consensus       267 lSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGK  284 (792)
T ss_pred             eecccceEEEEEeecCCC
Confidence            999999999999999887

>KOG1407|consensus

Probab=98.96  E-value=1.4e-09  Score=67.73  Aligned_cols=87  Identities=17%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      -..+|.+++..++|+-+|..+++|+.|+++.+|++...+.            .......+|++.|-.++|.|... .+++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~------------~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF------------RKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh------------hhhhcccCCCcchhhheeCCCCCcceEE
Confidence            3457899999999999999999999999999999987640            01223456888888899988654 5999


Q ss_pred             ecCCCcEEEEeCCCCCChhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ++.|..|++||++.++...+
T Consensus        83 as~dk~ir~wd~r~~k~~~~  102 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTAR  102 (313)
T ss_pred             ecCCceEEEEEeccCcEEEE
Confidence            99999999999998876544

>KOG0300|consensus

Probab=98.95  E-value=4.7e-09  Score=67.32  Aligned_cols=82  Identities=16%  Similarity=0.318  Sum_probs=70.9

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .+..+|...++-++-+|..+++++++.|-+.++||+....             +....+++|...|.+..|+.+.. +++
T Consensus       308 ~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-------------~sV~VFQGHtdtVTS~vF~~dd~-vVS  373 (481)
T KOG0300|consen  308 NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-------------QSVAVFQGHTDTVTSVVFNTDDR-VVS  373 (481)
T ss_pred             ccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-------------ceeeeecccccceeEEEEecCCc-eee
Confidence            4556899999999999999999999999999999999654             35678899999999999988654 779


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      ++.|.+|++||+++-+
T Consensus       374 gSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMR  389 (481)
T ss_pred             cCCCceEEEeeecccc
Confidence            9999999999998754

>KOG2445|consensus

Probab=98.95  E-value=2.2e-08  Score=63.75  Aligned_cols=83  Identities=11%  Similarity=0.225  Sum_probs=70.0

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCe
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEK   84 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~   84 (110)
                      +.|-.+|..-|.++.|.+-|+.+++++.|..++|||.....          ..+.+....+.|.+.|..+.|.+  -|+.
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqv   75 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQV   75 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC----------CceEEeeeEEecCCcEEEEEecCccccce
Confidence            34566899999999999999999999999999999975443          24545667788999999999954  4889


Q ss_pred             EEEecCCCcEEEEeC
Q psy11100         85 LTSSDETGLIIVWML   99 (110)
Q Consensus        85 l~s~~~~~~i~~w~~   99 (110)
                      +++++.|+++.+|.-
T Consensus        76 vA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   76 VATCSYDRTVSIWEE   90 (361)
T ss_pred             EEEEecCCceeeeee
Confidence            999999999999974

>KOG0642|consensus

Probab=98.92  E-value=4.1e-09  Score=71.20  Aligned_cols=84  Identities=23%  Similarity=0.355  Sum_probs=70.1

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|...+..+.|+|-...+++++.++.+++|++....      +.......++.++.+|.++|.|++.++.++.+.+++.
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC------CccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            3688889999999988899999999999999994322      1111223467899999999999999999999999999


Q ss_pred             CCcEEEEeCC
Q psy11100         91 TGLIIVWMLY  100 (110)
Q Consensus        91 ~~~i~~w~~~  100 (110)
                      ||+|+.|++.
T Consensus       365 Dg~I~~w~~p  374 (577)
T KOG0642|consen  365 DGTIRCWNLP  374 (577)
T ss_pred             CceeeeeccC
Confidence            9999999765

>KOG0301|consensus

Probab=98.91  E-value=4.6e-09  Score=72.50  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=61.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|++.|.+++.-|++ .+++|+.|..+++|.-..                .+.++.+|.+.|+.+++-+++ .|+|++
T Consensus       136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~----------------~l~tf~gHtD~VRgL~vl~~~-~flScs  197 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT----------------LLKTFSGHTDCVRGLAVLDDS-HFLSCS  197 (745)
T ss_pred             cCCcchheeeeeecCCC-cEEeccCcceeeeccCCc----------------hhhhhccchhheeeeEEecCC-CeEeec
Confidence            44777888877777766 567777788888886643                357899999999999987754 477999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .||.|+.|++ +|..+.++
T Consensus       198 NDg~Ir~w~~-~ge~l~~~  215 (745)
T KOG0301|consen  198 NDGSIRLWDL-DGEVLLEM  215 (745)
T ss_pred             CCceEEEEec-cCceeeee
Confidence            9999999999 55555443

>KOG1538|consensus

Probab=98.90  E-value=8.3e-09  Score=71.64  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=61.9

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      -|..++|-|||.-++.+. +..+.+||...+.              .++++++|.+.|++++|+.+|+.++||+.|..+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVI   78 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc--------------cccccccccceEEEEEEccCCceeccCCCceeEE
Confidence            788999999998765554 3578999999987              6789999999999999999999999999999999


Q ss_pred             EEeCC
Q psy11100         96 VWMLY  100 (110)
Q Consensus        96 ~w~~~  100 (110)
                      +|+..
T Consensus        79 ~W~~k   83 (1081)
T KOG1538|consen   79 IWTSK   83 (1081)
T ss_pred             Eeccc
Confidence            99854

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=9.7e-09  Score=46.40  Aligned_cols=35  Identities=23%  Similarity=0.583  Sum_probs=32.3

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~   42 (110)
                      ....+|.+.|.+++|+|++..+++++.|+.+++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            44568999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1009|consensus

Probab=98.88  E-value=2.4e-08  Score=65.38  Aligned_cols=86  Identities=17%  Similarity=0.327  Sum_probs=68.8

Q ss_pred             cCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ......++..+.|++++. .+++|+.|..+++|.+......     .....+.....+..|...|+.+.|+|+|++++|+
T Consensus         9 ~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~-----~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg   83 (434)
T KOG1009|consen    9 SWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG-----GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG   83 (434)
T ss_pred             EecCCCceEEEEeccCcccceecccCccceeeeeeeecCCC-----CCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence            333457899999999765 8999999999999998865411     1112334566778899999999999999999999


Q ss_pred             cCCCcEEEEeCC
Q psy11100         89 DETGLIIVWMLY  100 (110)
Q Consensus        89 ~~~~~i~~w~~~  100 (110)
                      +.++.+.+|...
T Consensus        84 ~D~g~v~lWk~~   95 (434)
T KOG1009|consen   84 GDGGEVFLWKQG   95 (434)
T ss_pred             CCCceEEEEEec
Confidence            999999999776

>KOG0268|consensus

Probab=98.88  E-value=2.7e-09  Score=69.10  Aligned_cols=74  Identities=24%  Similarity=0.404  Sum_probs=65.8

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|..+|.|++=+|.. ..+++|+.||.|++||+....              +..++..|.+.|..+++..  ..+.+++
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f~AH~G~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTFKAHEGLVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhheeecccCceeeEEecc--cceEEec
Confidence            5899999999999976 679999999999999999876              6788999999999999866  6688999


Q ss_pred             CCCcEEEEeCC
Q psy11100         90 ETGLIIVWMLY  100 (110)
Q Consensus        90 ~~~~i~~w~~~  100 (110)
                      .|.+|+.|-+.
T Consensus       127 dDKtvK~wk~~  137 (433)
T KOG0268|consen  127 DDKTVKQWKID  137 (433)
T ss_pred             CCcceeeeecc
Confidence            99999999743

>KOG1523|consensus

Probab=98.87  E-value=9.1e-09  Score=65.71  Aligned_cols=99  Identities=17%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             eeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccc----c-ccceeeeEEeeccCCCeEEEEE
Q psy11100          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAA----A-NVNLAMNQSLQGHSGKVRAIIW   78 (110)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~v~~~~~   78 (110)
                      +++|.|..++.+.|.++.|+|++-++++|+.|+..++|...-....+++.++    . +.+. .+..+....+.+..+.|
T Consensus       136 WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~-lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  136 WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ-LMSEASSSGGWVHGVLF  214 (361)
T ss_pred             ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH-HHHhhccCCCceeeeEe
Confidence            5789999999999999999999999999999999999987654322221111    1 1111 12233345678999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100         79 NEQYEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        79 s~~~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                      +|.|..|+-.++|+++.+-|....+
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999998876553

>KOG0321|consensus

Probab=98.87  E-value=6.8e-09  Score=71.23  Aligned_cols=80  Identities=14%  Similarity=0.313  Sum_probs=68.9

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE--EeeccCCCeEEEEEcCCCCe-EE
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ--SLQGHSGKVRAIIWNEQYEK-LT   86 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~-l~   86 (110)
                      ...|.+.|.++.|-|....|++++.|.++++||+....              ...  .+.+|...|.+++|.|.... |+
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~--------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~  161 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR--------------LVGGRLNLGHTGSVKSECFMPTNPAVFC  161 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccce--------------eecceeecccccccchhhhccCCCccee
Confidence            34699999999999976789999999999999999875              333  37789999999999998776 99


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +|+.||.+.+||.+-..
T Consensus       162 tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  162 TGGRDGEILLWDCRCNG  178 (720)
T ss_pred             eccCCCcEEEEEEeccc
Confidence            99999999999987544

>KOG0305|consensus

Probab=98.87  E-value=2.2e-08  Score=67.81  Aligned_cols=79  Identities=23%  Similarity=0.451  Sum_probs=68.9

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEecCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +...|+++.|+++|..|+.|..+|.|.+||.....              ....+.+ |...|.+++|+  +..+.++..+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~  279 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRD  279 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--------------ccccccCCcCceeEEEecc--CceEEEecCC
Confidence            36889999999999999999999999999998776              4456666 88999999997  6678999999


Q ss_pred             CcEEEEeCCCCCChhh
Q psy11100         92 GLIIVWMLYKCNDDDE  107 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~  107 (110)
                      +.|..+|++..+...+
T Consensus       280 ~~I~~~dvR~~~~~~~  295 (484)
T KOG0305|consen  280 GKILNHDVRISQHVVS  295 (484)
T ss_pred             CcEEEEEEecchhhhh
Confidence            9999999998776655

>KOG1063|consensus

Probab=98.86  E-value=1.9e-08  Score=69.65  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCC-----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ||...|.+++.+|+|+++++++...     .+++|+...-.              ....+.+|+-.|..++|||+|++|+
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~--------------~~~~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL--------------QVQELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh--------------hhheecccceEEEEEEECCCCcEEE
Confidence            7989999999999999999998764     47889887765              3456889999999999999999999


Q ss_pred             EecCCCcEEEEeCCC
Q psy11100         87 SSDETGLIIVWMLYK  101 (110)
Q Consensus        87 s~~~~~~i~~w~~~~  101 (110)
                      +++.|.++.+|+...
T Consensus       589 svsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQE  603 (764)
T ss_pred             EeecCceEEeeeeec
Confidence            999999999998744

>KOG4328|consensus

Probab=98.85  E-value=1.7e-08  Score=66.95  Aligned_cols=79  Identities=15%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      -|.-+|..++++|. ..++++++.|++++|||++.......          +......|...|++..|||.+-.+++.+.
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCceEeecc
Confidence            36679999999996 56799999999999999997651100          12334568899999999999888999999


Q ss_pred             CCcEEEEeCC
Q psy11100         91 TGLIIVWMLY  100 (110)
Q Consensus        91 ~~~i~~w~~~  100 (110)
                      |..|++||..
T Consensus       390 D~~IRv~dss  399 (498)
T KOG4328|consen  390 DNEIRVFDSS  399 (498)
T ss_pred             CCceEEeecc
Confidence            9999999983

>KOG2394|consensus

Probab=98.85  E-value=2e-08  Score=68.00  Aligned_cols=53  Identities=23%  Similarity=0.517  Sum_probs=47.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN   79 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s   79 (110)
                      .-+...|++|+|||+++++|+.|--|.||.+...+              ....-++|...|+.++|.
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR--------------VVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR--------------VVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccce--------------EEEeccccccceeeEeec
Confidence            34789999999999999999999999999999887              666778899999999887

>KOG2919|consensus

Probab=98.83  E-value=1.8e-08  Score=64.71  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeecc---CCCeEEEEEcCCCCeEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s   87 (110)
                      +|.+.|+.+.|+++|+.+.+|.. +-.+-.||++...+             ++..+..|   +++-.-+...|++++|++
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-------------pv~~L~rhv~~TNQRI~FDld~~~~~Las  314 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-------------PVYALERHVGDTNQRILFDLDPKGEILAS  314 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-------------hhhhhhhhccCccceEEEecCCCCceeec
Confidence            89999999999999999988865 56788999997651             33334444   344446677899999999


Q ss_pred             ecCCCcEEEEeCCC-CC
Q psy11100         88 SDETGLIIVWMLYK-CN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~-~~  103 (110)
                      ++.+|.|++||+.+ |.
T Consensus       315 G~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  315 GDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             cCCCccEEEEecCCCCC
Confidence            99999999999987 54

>KOG2048|consensus

Probab=98.80  E-value=1.3e-07  Score=65.41  Aligned_cols=83  Identities=22%  Similarity=0.399  Sum_probs=67.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ...+.+.+++.+|.+..++.|+.||.+..++.....            +.....+...++.+.++.|+|++..+++|+.|
T Consensus       108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             CCCcceeEEEeCCccceEEeecCCceEEEEecCCce------------EEEEeecccccceEEEEEecCCccEEEecccC
Confidence            345789999999999999999999977777766553            11233344457899999999999999999999


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      |.|++||..++.-+.
T Consensus       176 g~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLH  190 (691)
T ss_pred             ceEEEEEcCCCceEE
Confidence            999999999887544

>KOG1036|consensus

Probab=98.80  E-value=9.7e-08  Score=60.70  Aligned_cols=78  Identities=21%  Similarity=0.307  Sum_probs=67.5

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +....|.+++.+++|.++ ..+++|+.||.|+++|+..+.               ...+..|...+.++..++....+++
T Consensus        48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~---------------~~~igth~~~i~ci~~~~~~~~vIs  111 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN---------------EDQIGTHDEGIRCIEYSYEVGCVIS  111 (323)
T ss_pred             hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc---------------ceeeccCCCceEEEEeeccCCeEEE
Confidence            344578999999999884 457899999999999999876               3567889999999999998888999


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      ++=|++|++||.+.
T Consensus       112 gsWD~~ik~wD~R~  125 (323)
T KOG1036|consen  112 GSWDKTIKFWDPRN  125 (323)
T ss_pred             cccCccEEEEeccc
Confidence            99999999999985

>KOG0307|consensus

Probab=98.80  E-value=6e-09  Score=74.95  Aligned_cols=83  Identities=20%  Similarity=0.351  Sum_probs=67.0

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCe-EEE
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEK-LTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~-l~s   87 (110)
                      .|++.|..+.|++. +++|++|+.+|.|.|||+....              .-+..  ....+.|.+++||..-++ |++
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS  179 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS  179 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhc
Confidence            59999999999997 5599999999999999999854              11122  123578999999987655 889


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.+|...+||++..+-+.++
T Consensus       180 ~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             cCCCCCceeccccCCCccccc
Confidence            999999999999988766554

>KOG0288|consensus

Probab=98.78  E-value=4e-09  Score=69.12  Aligned_cols=81  Identities=17%  Similarity=0.334  Sum_probs=70.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +..+.++.+.|.+++..+++++.|+.+++|++....              ...++.+|++.|.++.|......+++++.|
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~D  282 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSAD  282 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchh--------------hhhhhcccccceeeehhhccccceeecccc
Confidence            455789999999999999999999999999999887              678899999999999998766669999999


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      .+++.||+.+..+..
T Consensus       283 RtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  283 RTIKLWDLQKAYCSK  297 (459)
T ss_pred             chhhhhhhhhhheec
Confidence            999999998865543

>KOG0290|consensus

Probab=98.77  E-value=8.8e-08  Score=60.81  Aligned_cols=81  Identities=15%  Similarity=0.257  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      ..+.+++++..|+. +.+++.+++.|-+-.+||+..+.   ..        ...+++=.|..+|..++|...+.- |+++
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---~~--------~vkTQLIAHDKEV~DIaf~~~s~~~FASv  215 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---SG--------TVKTQLIAHDKEVYDIAFLKGSRDVFASV  215 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeecc---cc--------ceeeEEEecCcceeEEEeccCccceEEEe
Confidence            35668899999987 57789999999999999999863   00        034566689999999999986654 9999


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      +.||+++++|++.-
T Consensus       216 gaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  216 GADGSVRMFDLRSL  229 (364)
T ss_pred             cCCCcEEEEEeccc
Confidence            99999999999853

>KOG2106|consensus

Probab=98.77  E-value=1.8e-07  Score=63.18  Aligned_cols=79  Identities=14%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ++++++++|+|+|.++|.|+.|+.+.+|.+....          ..  ....-+.+.+.+..+.||+|++++.+-+.|..
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g----------~~--y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG----------RK--YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE  514 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC----------cE--EEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence            6889999999999999999999999999988654          01  12222234488999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy11100         94 IIVWMLYKCND  104 (110)
Q Consensus        94 i~~w~~~~~~~  104 (110)
                      |.+|.....+.
T Consensus       515 iLyW~~~~~~~  525 (626)
T KOG2106|consen  515 ILYWKPSECKQ  525 (626)
T ss_pred             EEEEccccCcc
Confidence            99996554443

>KOG2048|consensus

Probab=98.76  E-value=1.7e-07  Score=64.77  Aligned_cols=81  Identities=19%  Similarity=0.354  Sum_probs=61.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-------Eeec-cCCCeEEEEEcCCCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-------SLQG-HSGKVRAIIWNEQYE   83 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~v~~~~~s~~~~   83 (110)
                      --++++.+++|+|++..++.|+.||.+++||...+.              .+.       .+.. ..--|.++.+=.+ .
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~--------------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~  216 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ--------------TLHIITMQLDRLSKREPTIVWSVLFLRD-S  216 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCc--------------eEEEeeecccccccCCceEEEEEEEeec-C
Confidence            346899999999999999999999999999999876              222       1111 1223556665543 4


Q ss_pred             eEEEecCCCcEEEEeCCCCCChhh
Q psy11100         84 KLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        84 ~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      .+++++..|+|++||...+..+.-
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhh
Confidence            588999999999999998876654

>KOG1408|consensus

Probab=98.76  E-value=2.8e-08  Score=69.54  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+.-++++++|+++|+++++|-  ....+++|++....              ....+..|.-.|.+++|+|.+.++++.+
T Consensus        76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~--------------vVAEfvdHKY~vtcvaFsp~~kyvvSVG  141 (1080)
T KOG1408|consen   76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG--------------VVAEFVDHKYNVTCVAFSPGNKYVVSVG  141 (1080)
T ss_pred             ccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc--------------chhhhhhccccceeeeecCCCcEEEeec
Confidence            4556899999999999999986  45679999998765              4567888999999999999999999887


Q ss_pred             --CCCcEEEEeCCCCC
Q psy11100         90 --ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 --~~~~i~~w~~~~~~  103 (110)
                        +|..|.+||.+.+.
T Consensus       142 sQHDMIVnv~dWr~N~  157 (1080)
T KOG1408|consen  142 SQHDMIVNVNDWRVNS  157 (1080)
T ss_pred             cccceEEEhhhhhhcc
Confidence              57789999877554

>KOG0299|consensus

Probab=98.76  E-value=1e-07  Score=63.35  Aligned_cols=96  Identities=11%  Similarity=0.089  Sum_probs=73.2

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccc--cc-cceeeeEEe-eccCCCeEEEEEcCCCCeE
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAA--AN-VNLAMNQSL-QGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~--~~-~~~~~~~~~-~~~~~~v~~~~~s~~~~~l   85 (110)
                      ..|.-.+.+++++|+..+..+++.++++.-|++..+.+. ..-++.  .. +.. ....- ..|...+.+++.|+||.+|
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~-~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGN-PLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccC-CCCcccccccceeEEEEEcCCCcEE
Confidence            378899999999999999999999999999999887632 000000  01 111 11112 3788999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCChhh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ++++.|..|.+|+..+...+..
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~  239 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKV  239 (479)
T ss_pred             EecCCCceEEEecCcccchhhc
Confidence            9999999999999998776543

>KOG0301|consensus

Probab=98.75  E-value=1.3e-07  Score=65.60  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|+..|..+++-+++. +++++.||.++.|++...               .+....+|++.|+++...+.+..+++++
T Consensus       175 f~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge---------------~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  175 FSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE---------------VLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             hccchhheeeeEEecCCC-eEeecCCceEEEEeccCc---------------eeeeeeccceEEEEEEecCCCCeEEEec
Confidence            347999999999998766 557788999999999654               5778889999999999889999999999


Q ss_pred             CCCcEEEEeCC
Q psy11100         90 ETGLIIVWMLY  100 (110)
Q Consensus        90 ~~~~i~~w~~~  100 (110)
                      .|+++++|+..
T Consensus       239 EDrtlriW~~~  249 (745)
T KOG0301|consen  239 EDRTLRIWKKD  249 (745)
T ss_pred             CCceEEEeecC
Confidence            99999999865

>KOG1408|consensus

Probab=98.75  E-value=5.9e-08  Score=67.96  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=71.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+....+...|.|.++++.+.|.++.++|..++.              +..+-.+|...|..+.|.+|-++|++++.|
T Consensus       639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE--------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE--------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             cCCCceEEEEECCCccEEEEeecCCceEEEEeccch--------------hhhhhcCcchheeeeeecccchhheeecCC
Confidence            566788889999999999999999999999999987              667778999999999999999999999999


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      |.|.+|.+.....
T Consensus       705 gCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  705 GCIFVWKLPLTMI  717 (1080)
T ss_pred             ceEEEEECchhHh
Confidence            9999999876443

>KOG0300|consensus

Probab=98.74  E-value=3.5e-08  Score=63.44  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      ..+.+.+|...|..++.......+++++.|.+-++|.+.++.              ++.++.+|.+.|++++|++.+.++
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~--------------CL~~Y~GH~GSVNsikfh~s~~L~  205 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA--------------CLATYTGHTGSVNSIKFHNSGLLL  205 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc--------------ceeeecccccceeeEEeccccceE
Confidence            345667999999999887777788999999999999999998              888999999999999999999999


Q ss_pred             EEecCCCcEEEEe
Q psy11100         86 TSSDETGLIIVWM   98 (110)
Q Consensus        86 ~s~~~~~~i~~w~   98 (110)
                      ++++.|++-.+|.
T Consensus       206 lTaSGD~taHIW~  218 (481)
T KOG0300|consen  206 LTASGDETAHIWK  218 (481)
T ss_pred             EEccCCcchHHHH
Confidence            9999999988886

>KOG1007|consensus

Probab=98.73  E-value=4.8e-08  Score=61.95  Aligned_cols=78  Identities=23%  Similarity=0.372  Sum_probs=61.0

Q ss_pred             CCCCceEEEEEec--CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCe-EEE
Q psy11100         12 PNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEK-LTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~-l~s   87 (110)
                      +++...+.-+|+|  +|+-+++.+ ++++..||.++..              ....+ ..|...|..+.|+|+-+. |++
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~--------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt  232 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK--------------KNNSIEDAHGQRVRDLDFNPNKQHILVT  232 (370)
T ss_pred             cccceecccccCCCCccceEEEeC-CCcEEEEEccchh--------------hhcchhhhhcceeeeccCCCCceEEEEE
Confidence            3556677788999  576666644 7899999999875              22233 457888999999999877 899


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      ++.||.|++||.++.+.
T Consensus       233 ~gDdgyvriWD~R~tk~  249 (370)
T KOG1007|consen  233 CGDDGYVRIWDTRKTKF  249 (370)
T ss_pred             cCCCccEEEEeccCCCc
Confidence            99999999999987553

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.72  E-value=4.9e-07  Score=58.47  Aligned_cols=84  Identities=25%  Similarity=0.377  Sum_probs=69.2

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KL   85 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l   85 (110)
                      .....|...+..++|+|++..++.++. ++.+++|+.....              ....+..|...+.+++|+|++. .+
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------------PLSTLAGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------------eEEeeccCCCceEEEEEcCCcceEE
Confidence            344578899999999999998888875 9999999999754              4566777999999999999998 56


Q ss_pred             EEecCCCcEEEEeCCCCCCh
Q psy11100         86 TSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ++++.|+.+.+||...+...
T Consensus       215 ~~~~~d~~i~~wd~~~~~~~  234 (466)
T COG2319         215 ASGSSDGTIRLWDLSTGKLL  234 (466)
T ss_pred             EEecCCCcEEEEECCCCcEE
Confidence            66689999999987755543

>KOG1445|consensus

Probab=98.69  E-value=9.4e-08  Score=66.27  Aligned_cols=74  Identities=26%  Similarity=0.395  Sum_probs=64.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      -.|.++.|+|...-|......|.+++||+.+..              .+..+.+|...|.+..|+.||.++++++.|..|
T Consensus       129 ~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk--------------~~~el~~h~d~vQSa~WseDG~llatscKdkqi  194 (1012)
T KOG1445|consen  129 VIVECLRFHPTADGILASGAHGSVYITDISTQK--------------TAVELSGHTDKVQSADWSEDGKLLATSCKDKQI  194 (1012)
T ss_pred             eEEEEeecccCcCceEEeccCceEEEEEcccCc--------------eeecccCCchhhhccccccCCceEeeecCCcce
Confidence            468899999975555555667999999999987              778889999999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy11100         95 IVWMLYKC  102 (110)
Q Consensus        95 ~~w~~~~~  102 (110)
                      ++||.+..
T Consensus       195 rifDPRa~  202 (1012)
T KOG1445|consen  195 RIFDPRAS  202 (1012)
T ss_pred             EEeCCccC
Confidence            99998753

>KOG1273|consensus

Probab=98.69  E-value=3.1e-07  Score=58.97  Aligned_cols=60  Identities=13%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   83 (110)
                      +..+|.-+|.+++||+||++|++++.|..+.+||+..+.              ++..+.- ...|....|+|...
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--------------~l~rirf-~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--------------PLKRIRF-DSPVWGAQWHPRKR  119 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--------------ceeEEEc-cCccceeeeccccC
Confidence            344899999999999999999999999999999999876              3333332 35566666666443

>KOG0321|consensus

Probab=98.68  E-value=9.4e-08  Score=65.83  Aligned_cols=97  Identities=13%  Similarity=0.185  Sum_probs=63.7

Q ss_pred             eccCCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCc-------------CCcccccccceeeeEEeeccCCCe
Q psy11100          8 KIAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKES-------------TGQVAAANVNLAMNQSLQGHSGKV   73 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~v   73 (110)
                      ++.++|++.|..++|.|.. ..+++|+.||.+.+||.......             .+.+.+....-..+...+.+...+
T Consensus       138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence            4678999999999999965 56899999999999998754311             010000000000122233344444


Q ss_pred             EE---EEEcCCCCeEEEecC-CCcEEEEeCCCCCC
Q psy11100         74 RA---IIWNEQYEKLTSSDE-TGLIIVWMLYKCND  104 (110)
Q Consensus        74 ~~---~~~s~~~~~l~s~~~-~~~i~~w~~~~~~~  104 (110)
                      .+   +-+..|...|++++. |+.|+|||+++...
T Consensus       218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             eeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            44   555677788888887 99999999987654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.64  E-value=3.8e-07  Score=57.78  Aligned_cols=76  Identities=11%  Similarity=-0.018  Sum_probs=56.3

Q ss_pred             EEEEEecCCCEEEE-EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-cCCCcEE
Q psy11100         18 NCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-DETGLII   95 (110)
Q Consensus        18 ~~~~~~p~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~~~i~   95 (110)
                      ..+.|+|+++.+.. ...++.+.+||.....              ..... .+...+.+++|+|+|+.++++ ..++.|.
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYE--------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCc--------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence            45788999987544 3456679999998665              22222 234568899999999998776 4689999


Q ss_pred             EEeCCCCCChhhh
Q psy11100         96 VWMLYKCNDDDEW  108 (110)
Q Consensus        96 ~w~~~~~~~~~~~  108 (110)
                      +||+.+++.+.++
T Consensus       275 v~d~~~~~~~~~~  287 (300)
T TIGR03866       275 VIDVAALKVIKSI  287 (300)
T ss_pred             EEECCCCcEEEEE
Confidence            9999998876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096|consensus

Probab=98.64  E-value=3.3e-07  Score=58.97  Aligned_cols=92  Identities=12%  Similarity=0.085  Sum_probs=65.6

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC--CcCCc-ccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK--ESTGQ-VAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .+|++.|...+|+|+.+.+++.+.||+.++||.+-.-  ++++. ++...      ..+....+.-..++++|.|..|+.
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS------APLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC------cchhhcCCCceEEEeCCCCcEEEe
Confidence            4899999999999999999999999999999987432  11111 11100      011222334447899999998765


Q ss_pred             ecCCCcEEEEeCCCCCChhhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      + ....|.++..++|+...+++
T Consensus       349 s-~gs~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  349 S-FGSDLKVFASEDGKDYPELE  369 (420)
T ss_pred             e-cCCceEEEEcccCccchhHH
Confidence            5 36689999999998887765

>KOG4328|consensus

Probab=98.64  E-value=3.7e-07  Score=60.82  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             CCCCceEEEEEecCC--CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         12 PNNTKVNCLAWHQNQ--GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~--~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      .+.++|++++|+|..  ..+++|+..|.|=+||+.....   .       ......+..|+..|.++.|+|...- +++.
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---d-------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---D-------KDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---c-------cCceEEeccCCccccceEecCCChhheeee
Confidence            477899999999964  4689999999999999962210   0       0124567789999999999997554 9999


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.||+|++-|++++..
T Consensus       254 SyDGtiR~~D~~~~i~  269 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNIS  269 (498)
T ss_pred             ccCceeeeeeecchhh
Confidence            9999999999987654

>KOG0307|consensus

Probab=98.63  E-value=7.5e-08  Score=69.53  Aligned_cols=80  Identities=25%  Similarity=0.351  Sum_probs=64.0

Q ss_pred             CCceEEEEEecCCCE----EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100         14 NTKVNCLAWHQNQGW----IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS   88 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~----l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~   88 (110)
                      ..+...++|.+.|..    |+.|..||.|-+||.......        .....+.++..|++.|..+.||+.+. ++++|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccC--------cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            357888999986654    888899999999998864100        01124667788999999999999866 79999


Q ss_pred             cCCCcEEEEeCCC
Q psy11100         89 DETGLIIVWMLYK  101 (110)
Q Consensus        89 ~~~~~i~~w~~~~  101 (110)
                      +++|.|.+||+.+
T Consensus       136 a~~geI~iWDlnn  148 (1049)
T KOG0307|consen  136 ADDGEILIWDLNK  148 (1049)
T ss_pred             CCCCcEEEeccCC
Confidence            9999999999986

>KOG1524|consensus

Probab=98.63  E-value=9.7e-08  Score=64.95  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=67.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc----C--------------Cc---------ccccccceeeeE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES----T--------------GQ---------VAAANVNLAMNQ   64 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~----~--------------~~---------~~~~~~~~~~~~   64 (110)
                      .|.+.+.+-.|+|||.-|++.+.||.+++|.-....-+    .              +-         .++-..+. ..-
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-k~i  180 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANS-KII  180 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccc-cee
Confidence            68899999999999999999999999999975432100    0              00         00111111 134


Q ss_pred             EeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100         65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK  101 (110)
Q Consensus        65 ~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~  101 (110)
                      ..+.|.+-|.++.||+....+++++.|-..++||-..
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence            5678999999999999999999999999999999643

>KOG0644|consensus

Probab=98.60  E-value=4.7e-08  Score=69.26  Aligned_cols=85  Identities=21%  Similarity=0.416  Sum_probs=76.2

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.+.|.|..|...|.++++|+.|..++||...+..              ++..+.+|.+.+..++.+.+..++++++.
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------~lAs~rGhs~ditdlavs~~n~~iaaaS~  252 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------CLASCRGHSGDITDLAVSSNNTMIAAASN  252 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchh--------------hhccCCCCccccchhccchhhhhhhhccc
Confidence            3799999999999999999999999999999988776              67888999999999999998888999999


Q ss_pred             CCcEEEEeCCCCCChhhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~~  109 (110)
                      |..|++|.+..+.-+.-|+
T Consensus       253 D~vIrvWrl~~~~pvsvLr  271 (1113)
T KOG0644|consen  253 DKVIRVWRLPDGAPVSVLR  271 (1113)
T ss_pred             CceEEEEecCCCchHHHHh
Confidence            9999999999887665443

>KOG1036|consensus

Probab=98.58  E-value=6.6e-07  Score=57.01  Aligned_cols=81  Identities=11%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ++..+-...|+.+.|+|.+..|+.++.||++++|++....               +.....|..++.+.+|.+ ...+++
T Consensus         7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------l~~~~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------LKLKFKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------hhhheecCCceeeeeccC-CceEEE
Confidence            3445556889999999988888888899999999998764               233345788999999977 445789


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      ++.||.|+.+|+.+++.
T Consensus        71 G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             eccCceEEEEEecCCcc
Confidence            99999999999988764

>KOG1272|consensus

Probab=98.56  E-value=9.7e-08  Score=63.75  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .+.+..++-+|-+..+-.|...|.|.+|......              ++..+..|.+.|+++++.+.|.+.++.+.|..
T Consensus       251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske--------------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~  316 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--------------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRK  316 (545)
T ss_pred             CCccchhhcCCccceEEEcCCCceEEecCCCCcc--------------hHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence            3566777788888888899999999999888765              66777889999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy11100         94 IIVWMLYKCND  104 (110)
Q Consensus        94 i~~w~~~~~~~  104 (110)
                      +++||+++-..
T Consensus       317 ~kIWDlR~~~q  327 (545)
T KOG1272|consen  317 VKIWDLRNFYQ  327 (545)
T ss_pred             eeEeeeccccc
Confidence            99999987543

>KOG2919|consensus

Probab=98.56  E-value=7.9e-07  Score=57.32  Aligned_cols=78  Identities=24%  Similarity=0.367  Sum_probs=64.7

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +..+-+.|++|+|- ...++.|+....+=++.-....              +++.+.+|.+.|..++|.++|+.|.++..
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------------pl~llggh~gGvThL~~~edGn~lfsGaR  270 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------------PLQLLGGHGGGVTHLQWCEDGNKLFSGAR  270 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------------ceeeecccCCCeeeEEeccCcCeeccccc
Confidence            34677999999996 4578999888887777777665              67888899999999999999999888875


Q ss_pred             -CCcEEEEeCCCCC
Q psy11100         91 -TGLIIVWMLYKCN  103 (110)
Q Consensus        91 -~~~i~~w~~~~~~  103 (110)
                       +..|.+||++.-+
T Consensus       271 k~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  271 KDDKILCWDIRYSR  284 (406)
T ss_pred             CCCeEEEEeehhcc
Confidence             6789999998643

>KOG4227|consensus

Probab=98.55  E-value=1.9e-07  Score=61.65  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..+|++-|.++.|+.++++|++|+.|..+++|+....-....     +.   ++.... .|...|.+++|+-...++.++
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-----~K---PI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-----PK---PIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-----CC---CceeccCccccceEEEEEccCCeeEecC
Confidence            347999999999999999999999999999999875421100     00   233333 355889999999988899999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.+++|...|+++.+.+
T Consensus       124 ~~~~~VI~HDiEt~qsi  140 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSI  140 (609)
T ss_pred             CCcceeEeeecccceee
Confidence            99999999999877654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.53  E-value=1.3e-06  Score=55.30  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             CceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-EecCCC
Q psy11100         15 TKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SSDETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~~~   92 (110)
                      ..+..++|+|++..+ +++..++.+++||.....              ....+..+ ..+..++|+|+++.++ ++..++
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------------~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE--------------VIGTLPSG-PDPELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------------EEEeccCC-CCccEEEECCCCCEEEEEcCCCC
Confidence            346679999999876 566778999999998765              23333333 2345789999998754 555689


Q ss_pred             cEEEEeCCCCCChh
Q psy11100         93 LIIVWMLYKCNDDD  106 (110)
Q Consensus        93 ~i~~w~~~~~~~~~  106 (110)
                      .+.+||+.+++.+.
T Consensus        96 ~l~~~d~~~~~~~~  109 (300)
T TIGR03866        96 LVTVIDIETRKVLA  109 (300)
T ss_pred             eEEEEECCCCeEEe
Confidence            99999998765443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1587|consensus

Probab=98.52  E-value=3.5e-07  Score=63.29  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcC-CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD-TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      ..|.++|.++.++|-+..+...+.|..+++|... ...              ++..+..+...|.+++|||.-.- |+++
T Consensus       395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--------------Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--------------PLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccCcceEeeecCCCccceeeeeccceeEeccccCCCC--------------cchhhhhccceeeeeEEcCcCceEEEEE
Confidence            4678999999999988776665669999999888 333              45666667778999999997665 8899


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      +.+|.|.+||+...
T Consensus       461 d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQD  474 (555)
T ss_pred             cCCCceehhhhhcc
Confidence            99999999998653

>KOG0270|consensus

Probab=98.50  E-value=1.3e-06  Score=57.99  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      .|..+|.++.|+|. .+.|++|+.|++|.+.|.+...              ....-..-.+.|-.++|.|.... +.++.
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------------~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------------NSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------------ccCceEEeccceEEEEecCCCceeEEEec
Confidence            47889999999995 7789999999999999998532              11111223578889999998777 77888


Q ss_pred             CCCcEEEEeCCCC-CChhhh
Q psy11100         90 ETGLIIVWMLYKC-NDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~-~~~~~~  108 (110)
                      .||+|+-+|.++. +.+.++
T Consensus       350 ddG~v~~~D~R~~~~~vwt~  369 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTL  369 (463)
T ss_pred             CCceEEeeecCCCCCceeEE
Confidence            9999999999874 544443

>KOG3881|consensus

Probab=98.49  E-value=1.2e-06  Score=57.39  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-eeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      ..+++++...|+++.+.+|...+.+..||...+.              .... +++-.+.++++..+|.++++++++.|.
T Consensus       247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k--------------l~g~~~kg~tGsirsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK--------------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             cCcceeeeecCCCcEEEEecccchhheecccCce--------------eeccccCCccCCcceEEEcCCCceEEeeccce
Confidence            4678888899999999999999999999999886              4444 677889999999999999999999999


Q ss_pred             cEEEEeCCCCCCh
Q psy11100         93 LIIVWMLYKCNDD  105 (110)
Q Consensus        93 ~i~~w~~~~~~~~  105 (110)
                      .|+++|..+.+.+
T Consensus       313 yvRIhD~ktrkll  325 (412)
T KOG3881|consen  313 YVRIHDIKTRKLL  325 (412)
T ss_pred             eEEEeecccchhh
Confidence            9999999985543

>KOG0974|consensus

Probab=98.49  E-value=1.6e-06  Score=62.43  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=66.1

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.+..+.++.+|.++++.+.|.++++|++.+..             ......-+|+..|..+.|.|.  .+++++
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-------------~~~~~~fgHsaRvw~~~~~~n--~i~t~g  235 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-------------VLGCTGFGHSARVWACCFLPN--RIITVG  235 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc-------------ccCcccccccceeEEEEeccc--eeEEec
Confidence            45899999999999999999999999999999999876             122355689999999999988  899999


Q ss_pred             CCCcEEEEeCC
Q psy11100         90 ETGLIIVWMLY  100 (110)
Q Consensus        90 ~~~~i~~w~~~  100 (110)
                      .|-+.++|+..
T Consensus       236 edctcrvW~~~  246 (967)
T KOG0974|consen  236 EDCTCRVWGVN  246 (967)
T ss_pred             cceEEEEEecc
Confidence            99999999544

>KOG2055|consensus

Probab=98.48  E-value=2.1e-06  Score=57.41  Aligned_cols=80  Identities=14%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDET   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~   91 (110)
                      ..+.|+++.|+|.-+.+.+++.|+.+++|.+.....            ..++.+.-...++.+..|.|+|+ .+++++..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr  279 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR  279 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC------------hhheeeeeccCccceeeecCCCceEEEecccc
Confidence            457999999999999999999999999999886540            02344444567899999999999 68899999


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      ..++.||+.+.+.
T Consensus       280 ky~ysyDle~ak~  292 (514)
T KOG2055|consen  280 KYLYSYDLETAKV  292 (514)
T ss_pred             eEEEEeecccccc
Confidence            9999999987664

>KOG2055|consensus

Probab=98.48  E-value=3.2e-06  Score=56.62  Aligned_cols=76  Identities=11%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC-CeEEEEEcCCCCeEEEecCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG-KVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ..+.|..+.|+.+++.|...+.+|.|.+||+....              ++..+....+ .-.+++.|+++.+|++|+..
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~--------------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS--------------CLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc--------------eEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            35789999999999988888889999999999876              5565654322 23577888999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11100         92 GLIIVWMLYKC  102 (110)
Q Consensus        92 ~~i~~w~~~~~  102 (110)
                      |.|.+||..+.
T Consensus       409 GiVNIYd~~s~  419 (514)
T KOG2055|consen  409 GIVNIYDGNSC  419 (514)
T ss_pred             ceEEEeccchh
Confidence            99999996653

>KOG4378|consensus

Probab=98.46  E-value=1.9e-06  Score=58.37  Aligned_cols=90  Identities=13%  Similarity=0.231  Sum_probs=70.9

Q ss_pred             ceeeee---eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-CCCeEEEE
Q psy11100          2 FIYLSK---KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-SGKVRAII   77 (110)
Q Consensus         2 ~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~   77 (110)
                      |++.+|   +...+|++.|+++.++-..++|++++..|.+.+..+.+..              ....+... .+.|..+.
T Consensus       106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--------------~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen  106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--------------KTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--------------cccceecCCCCeEEEee
Confidence            455444   3455899999999999999999999999999999988765              23445544 34567999


Q ss_pred             EcCCCCe-EEEecCCCcEEEEeCCCCCCh
Q psy11100         78 WNEQYEK-LTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        78 ~s~~~~~-l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ++|..++ |.+++.+|.|.+||+...+-+
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~  200 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPI  200 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcc
Confidence            9998887 778889999999998765543

>KOG2139|consensus

Probab=98.46  E-value=2.3e-06  Score=55.94  Aligned_cols=73  Identities=12%  Similarity=0.276  Sum_probs=57.6

Q ss_pred             CCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      ..+|+.+.|++||..+++++. +..+.+||...+.              ......-.-+.++-+.||||+.++..+.-|+
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~--------------~~pL~~~glgg~slLkwSPdgd~lfaAt~da  260 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ--------------KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA  260 (445)
T ss_pred             CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC--------------cccccccCCCceeeEEEcCCCCEEEEecccc
Confidence            378999999999998888775 5689999999875              1111222346678899999999999999999


Q ss_pred             cEEEEeCC
Q psy11100         93 LIIVWMLY  100 (110)
Q Consensus        93 ~i~~w~~~  100 (110)
                      ..++|+..
T Consensus       261 vfrlw~e~  268 (445)
T KOG2139|consen  261 VFRLWQEN  268 (445)
T ss_pred             eeeeehhc
Confidence            99999644

>KOG1310|consensus

Probab=98.45  E-value=6.3e-07  Score=61.32  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=68.5

Q ss_pred             ccCCCCCceEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-E
Q psy11100          9 IAIPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-L   85 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l   85 (110)
                      |..+|++.|.++.|-|.  .+.+++|..|..|+++|+.....    ......-......+..|...|..++-.|++.. +
T Consensus        88 I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~----~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen   88 ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE----GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF  163 (758)
T ss_pred             eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc----cccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence            55599999999999994  56789999999999999986420    00000011134556778899999999999955 9


Q ss_pred             EEecCCCcEEEEeCCC
Q psy11100         86 TSSDETGLIIVWMLYK  101 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~  101 (110)
                      .+++.||+++-+|++.
T Consensus       164 wsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  164 WSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEecCCcceeeecccC
Confidence            9999999999999986

>KOG0644|consensus

Probab=98.43  E-value=8.2e-08  Score=68.08  Aligned_cols=71  Identities=28%  Similarity=0.448  Sum_probs=64.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ||.+.++.++.+-+...+++++.|..+++|.+..+.              ++..+.+|++.|..++|+|.-    +.+.|
T Consensus       230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--------------pvsvLrghtgavtaiafsP~~----sss~d  291 (1113)
T KOG0644|consen  230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--------------PVSVLRGHTGAVTAIAFSPRA----SSSDD  291 (1113)
T ss_pred             CCccccchhccchhhhhhhhcccCceEEEEecCCCc--------------hHHHHhccccceeeeccCccc----cCCCC
Confidence            799999999998888889999999999999999876              677889999999999999964    77889


Q ss_pred             CcEEEEeCC
Q psy11100         92 GLIIVWMLY  100 (110)
Q Consensus        92 ~~i~~w~~~  100 (110)
                      |++++||.+
T Consensus       292 gt~~~wd~r  300 (1113)
T KOG0644|consen  292 GTCRIWDAR  300 (1113)
T ss_pred             CceEecccc
Confidence            999999987

>KOG1523|consensus

Probab=98.42  E-value=2.2e-06  Score=55.15  Aligned_cols=80  Identities=15%  Similarity=0.302  Sum_probs=68.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      .+|+|.+|++|+.-++.+.....+.|+......           .++...++..|...|+.+.|+|.+..|++++.|..-
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna   79 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA   79 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEccCCCCc
Confidence            689999999999999998888899998777553           244678889999999999999999999999999999


Q ss_pred             EEEeC-CCCCCh
Q psy11100         95 IVWML-YKCNDD  105 (110)
Q Consensus        95 ~~w~~-~~~~~~  105 (110)
                      ++|.. ..+.+.
T Consensus        80 yVw~~~~~~~Wk   91 (361)
T KOG1523|consen   80 YVWTQPSGGTWK   91 (361)
T ss_pred             cccccCCCCeec
Confidence            99998 555543

>KOG1188|consensus

Probab=98.42  E-value=1.8e-06  Score=55.81  Aligned_cols=84  Identities=17%  Similarity=0.280  Sum_probs=65.7

Q ss_pred             cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEE
Q psy11100         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s   87 (110)
                      ...|...|+++.|+|. .+.|++|+.||.+.+||+....+.+           .+...-.+...|.++.|...+.. +.+
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-----------aL~~viN~~sSI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-----------ALLHVINHGSSIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-----------hHHHhhcccceeeeeeeecCCcceEEE
Confidence            3479999999999995 6789999999999999998654111           12223346677999999887743 778


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      .++..++.+|+++.+..
T Consensus       230 lTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGSE  246 (376)
T ss_pred             EEccCceeEEEccCCCh
Confidence            88999999999988773

>KOG2106|consensus

Probab=98.40  E-value=6.8e-06  Score=55.81  Aligned_cols=91  Identities=8%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC------CcCCcccccccceee-----------------eEEeec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK------ESTGQVAAANVNLAM-----------------NQSLQG   68 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~-----------------~~~~~~   68 (110)
                      +|......++.+|+.+.+++++.|+.+++|+-....      ++.......+.+...                 +.+++.
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~  445 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT  445 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe
Confidence            788888888888888888888888888888833211      010000111111000                 122233


Q ss_pred             cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         69 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        69 ~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                      ...+++.++++|+|..|+-++.|+.|++|.+..+
T Consensus       446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            3678999999999999999999999999988643

>KOG2111|consensus

Probab=98.38  E-value=1.7e-06  Score=55.52  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc-EEEEeCCCCCChhhhhC
Q psy11100         32 GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL-IIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        32 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~-i~~w~~~~~~~~~~~~~  110 (110)
                      |...|.|.+-|+.....            .....+..|...|.+++.+.+|..+|+++..|+ |++||..+|..+.|+||
T Consensus       155 g~k~GqvQi~dL~~~~~------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKP------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCccceEEEEEhhhcCc------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            44567888888876540            012567889999999999999999999999887 77999999999999986

>KOG4378|consensus

Probab=98.37  E-value=2.9e-06  Score=57.57  Aligned_cols=78  Identities=9%  Similarity=0.173  Sum_probs=64.1

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .|.++...++|+|..+ ++++.+.|..+.+||.....               ....-.+..+...++|+++|..|+.|..
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---------------s~~~l~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---------------STDRLTYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeeccccc---------------ccceeeecCCcceeeecCCceEEEeecC
Confidence            6889999999999754 67888999999999998654               1222234567889999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      .|.|..||++..+.
T Consensus       271 ~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  271 KGELIAYDMRSTKA  284 (673)
T ss_pred             CceEEEEecccCCC
Confidence            99999999986543

>KOG1034|consensus

Probab=98.35  E-value=3.7e-06  Score=54.32  Aligned_cols=79  Identities=16%  Similarity=0.412  Sum_probs=66.1

Q ss_pred             CCCceEEEEEecC----CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEE
Q psy11100         13 NNTKVNCLAWHQN----QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTS   87 (110)
Q Consensus        13 h~~~v~~~~~~p~----~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s   87 (110)
                      |......++|+-+    ..+++.++.-|.+++.|.....              ....+.+|.+.|+.+.+.|+. +++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--------------~~~~~~ghG~sINeik~~p~~~qlvls  153 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--------------CSKNYRGHGGSINEIKFHPDRPQLVLS  153 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--------------hccceeccCccchhhhcCCCCCcEEEE
Confidence            6667778888764    3468888899999999998876              567788999999999999975 56899


Q ss_pred             ecCCCcEEEEeCCCCCCh
Q psy11100         88 SDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~  105 (110)
                      ++.|.+|++||+++...+
T Consensus       154 ~SkD~svRlwnI~~~~Cv  171 (385)
T KOG1034|consen  154 ASKDHSVRLWNIQTDVCV  171 (385)
T ss_pred             ecCCceEEEEeccCCeEE
Confidence            999999999999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=1e-05  Score=54.78  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .|...+...+|+|||+.++..+.+   ..+++||+..+..            ..+..+.+   ....++|+|+|..++.+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------------~~l~~~~g---~~~~~~wSPDG~~La~~  265 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------------KVVASFRG---HNGAPAFSPDGSRLAFA  265 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------------EEEecCCC---ccCceeECCCCCEEEEE
Confidence            456678999999999998877643   3699999976540            01222222   23468999999987765


Q ss_pred             -cCCCcEEE--EeCCCCC
Q psy11100         89 -DETGLIIV--WMLYKCN  103 (110)
Q Consensus        89 -~~~~~i~~--w~~~~~~  103 (110)
                       +.++.+.+  ||+.++.
T Consensus       266 ~~~~g~~~Iy~~d~~~~~  283 (429)
T PRK01742        266 SSKDGVLNIYVMGANGGT  283 (429)
T ss_pred             EecCCcEEEEEEECCCCC
Confidence             45676554  5665543

>KOG1538|consensus

Probab=98.33  E-value=7.2e-07  Score=62.41  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC---Cc------CCcccccccceee----eEEe----------
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK---ES------TGQVAAANVNLAM----NQSL----------   66 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~---~~------~~~~~~~~~~~~~----~~~~----------   66 (110)
                      ..+|...|.|++|+.||+.+++|+.|..|.+|......   ++      +-...+..+.+..    .+.+          
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K  128 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK  128 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh
Confidence            34899999999999999999999999999999865321   00      0000000000000    0000          


Q ss_pred             eccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100         67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM   98 (110)
Q Consensus        67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~   98 (110)
                      ......+.+.+|+.||+.++.|-.+|+|.+=|
T Consensus       129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen  129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             hhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            00124567778888888888888888877643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=1.6e-05  Score=53.86  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s   87 (110)
                      .|...+...+|+|||+.|+..+.   +..+.+||+..+.               ...+..+.+.+...+|+|+|..++ +
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------------~~~l~~~~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------------RELVGNFPGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------------EEEeecCCCcccCcEECCCCCEEEEE
Confidence            45678999999999998887653   3579999998765               123344455667889999999865 4


Q ss_pred             ecCCC--cEEEEeCCCCC
Q psy11100         88 SDETG--LIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~--~i~~w~~~~~~  103 (110)
                      .+.++  .|.+||+.++.
T Consensus       264 ~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             EecCCCceEEEEECCCCc
Confidence            44444  47778887664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.32  E-value=2e-05  Score=50.94  Aligned_cols=78  Identities=31%  Similarity=0.513  Sum_probs=61.8

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +|...+.+++|+|++. .+++++.|+.+++||.....              ... .+..|.... ...|+|++..+++++
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  260 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--------------LLRSTLSGHSDSV-VSSFSPDGSLLASGS  260 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--------------EEeeecCCCCcce-eEeECCCCCEEEEec
Confidence            5889999999999987 55555889999999877444              334 566776665 448999998888999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .++.+++|+......
T Consensus       261 ~d~~~~~~~~~~~~~  275 (466)
T COG2319         261 SDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCCcEEEeeecCCCc
Confidence            999999999886553

>KOG1587|consensus

Probab=98.29  E-value=1.2e-05  Score=55.84  Aligned_cols=81  Identities=21%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             CCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEEec
Q psy11100         13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~   89 (110)
                      -...|.|+.|+|. ...++.|..+|.|.+||+..........        .......|...+..+.|-.+...  |++++
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG--------LSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc--------cccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            4578999999995 6788999999999999999875211000        12334567888999999665443  99999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .||.|..|+++.
T Consensus       313 sDG~i~~W~~~~  324 (555)
T KOG1587|consen  313 SDGSICSWDTDM  324 (555)
T ss_pred             cCCcEeeeeccc
Confidence            999999997654

>KOG1524|consensus

Probab=98.28  E-value=2.5e-06  Score=58.34  Aligned_cols=85  Identities=21%  Similarity=0.304  Sum_probs=59.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC--------cCCccc--c----cccceeeeEEeeccCCCeEEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE--------STGQVA--A----ANVNLAMNQSLQGHSGKVRAII   77 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~--------~~~~~~--~----~~~~~~~~~~~~~~~~~v~~~~   77 (110)
                      .|.+-|.++.|+|....+++|+.|...++||.....-        ......  +    ....+...+.-+...+.|..++
T Consensus       184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnls  263 (737)
T KOG1524|consen  184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLS  263 (737)
T ss_pred             ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEE
Confidence            6999999999999999999999999999999864320        000000  0    0111111222223457788899


Q ss_pred             EcCCCCeEEEecCCCcEEE
Q psy11100         78 WNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~   96 (110)
                      ||+||..+++++..|.+.+
T Consensus       264 WS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  264 WSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EcCCCceeeccccCceEEE
Confidence            9999999998888888765

>KOG1409|consensus

Probab=98.27  E-value=3.4e-06  Score=54.79  Aligned_cols=79  Identities=28%  Similarity=0.492  Sum_probs=67.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.+.+++|.|....+.+|..|..+.+||+....             .....+.+|.+.|..+...+....+++++.|
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------------g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed  261 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------------GTAYELQGHNDKVQALSYAQHTRQLISCGED  261 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------------ceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence            899999999999999999999999999999998765             1345667888888887777777779999999


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      |.|-+||....+
T Consensus       262 g~i~~w~mn~~r  273 (404)
T KOG1409|consen  262 GGIVVWNMNVKR  273 (404)
T ss_pred             CeEEEEecccee
Confidence            999999986543

>KOG0771|consensus

Probab=98.24  E-value=1e-05  Score=53.41  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      ...+++++.+++|++++.|..+|.|-+++..+..              .++.. +.|...|..+.|+|+.+.+++.+.+.
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCcEEEEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            3578999999999999999999999999999875              44433 46888999999999999988888888


Q ss_pred             cEEEEeCC
Q psy11100         93 LIIVWMLY  100 (110)
Q Consensus        93 ~i~~w~~~  100 (110)
                      ...+..+.
T Consensus       347 ~~~v~~l~  354 (398)
T KOG0771|consen  347 EAAVTKLA  354 (398)
T ss_pred             ceeEEEEe
Confidence            77776554

>smart00320 WD40 WD40 repeats

Probab=98.21  E-value=1.2e-05  Score=34.60  Aligned_cols=37  Identities=27%  Similarity=0.598  Sum_probs=31.9

Q ss_pred             eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100         62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM   98 (110)
Q Consensus        62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~   98 (110)
                      ....+..|...+.++.|++.+..+++++.++.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0649|consensus

Probab=98.19  E-value=2.9e-05  Score=48.68  Aligned_cols=81  Identities=16%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee---------ccC-CCeEEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ---------GHS-GKVRAII   77 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~v~~~~   77 (110)
                      +.+.+|+.++.++.--....-+.+|+.||++++||.++.+              ....+.         .|. ..|-+++
T Consensus       150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k--------------~v~~ie~yk~~~~lRp~~g~wigala  215 (325)
T KOG0649|consen  150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK--------------HVSMIEPYKNPNLLRPDWGKWIGALA  215 (325)
T ss_pred             EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc--------------eeEEeccccChhhcCcccCceeEEEe
Confidence            4556999999999874444457899999999999999875              222222         222 2244444


Q ss_pred             EcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      -  +..++++++ ...+.+|+++.....
T Consensus       216 ~--~edWlvCGg-Gp~lslwhLrsse~t  240 (325)
T KOG0649|consen  216 V--NEDWLVCGG-GPKLSLWHLRSSEST  240 (325)
T ss_pred             c--cCceEEecC-CCceeEEeccCCCce
Confidence            4  455666655 567889998876543

>KOG1188|consensus

Probab=98.18  E-value=8.6e-06  Score=52.81  Aligned_cols=64  Identities=14%  Similarity=0.289  Sum_probs=52.9

Q ss_pred             CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEEEecCCCcEEEEeCCCCCC
Q psy11100         27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ..++++...|.+++||..++.              .+..++++...++.++|..+  ...+.+++.||+|++||++....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~--------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ--------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh--------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence            347888889999999999876              67788888888888888763  34489999999999999987543

>KOG2695|consensus

Probab=98.16  E-value=5.1e-06  Score=54.13  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC--eEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK--VRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~   88 (110)
                      .|.+.|+++..-. ++++|.+.+.+|.+++||.+.-+  ++.         ..++..+|.+.  -.-+...+....++++
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K--~~~---------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK--CKK---------SVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh--ccc---------ceeeeecccccccccccccccccceEEEc
Confidence            4777787776655 78899999999999999998643  000         25677777543  2334556677778889


Q ss_pred             cCCCcEEEEeCCCCCChhhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +.|...++|.++.|..+.+++
T Consensus       365 GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cCeeEEEEEecccCceeeccC
Confidence            999999999999998887764

>KOG0650|consensus

Probab=98.15  E-value=3.4e-06  Score=58.23  Aligned_cols=73  Identities=21%  Similarity=0.389  Sum_probs=63.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ...-.|..++.+|.|..|+.|+.|+.++.+|+.-..+             +..++..|...+..++|++.-.++++++.|
T Consensus       605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-------------hhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            3445788999999999999999999999999986541             346778899999999999999999999999


Q ss_pred             CcEEEE
Q psy11100         92 GLIIVW   97 (110)
Q Consensus        92 ~~i~~w   97 (110)
                      +++.|+
T Consensus       672 gtv~Vf  677 (733)
T KOG0650|consen  672 GTVIVF  677 (733)
T ss_pred             CcEEEE
Confidence            999887

>KOG4227|consensus

Probab=98.15  E-value=3.6e-05  Score=51.18  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +|.+.|.|++|.....++.+|..++.|...|+.+..              .+..+..  ..+.|+.+.-+|....|++.+
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t  168 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVT  168 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEe
Confidence            577899999999999999999999999999999875              3444432  245899999999999999999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .++.|.+||.+..+.
T Consensus       169 ~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  169 RAKLVSFIDNRDRQN  183 (609)
T ss_pred             cCceEEEEeccCCCC
Confidence            999999999987663

>KOG1334|consensus

Probab=98.14  E-value=2.5e-06  Score=57.54  Aligned_cols=81  Identities=16%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             eeccCCCCC--ceEEEE-EecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100          7 KKIAIPNNT--KVNCLA-WHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus         7 ~~~~~~h~~--~v~~~~-~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   83 (110)
                      +..+++|..  .|..+- |.|..+++++|+..|.|.+|+-....              .++...+....|+|+.-+|--.
T Consensus       384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e--------------ii~~MegDr~VVNCLEpHP~~P  449 (559)
T KOG1334|consen  384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE--------------IIRFMEGDRHVVNCLEPHPHLP  449 (559)
T ss_pred             chhhcccccccccceeeeccCccceEEecCccceEEEEecchhH--------------HHHHhhcccceEeccCCCCCCc
Confidence            445677764  344443 57888999999999999999998876              5666666666899999999999


Q ss_pred             eEEEecCCCcEEEEeCCC
Q psy11100         84 KLTSSDETGLIIVWMLYK  101 (110)
Q Consensus        84 ~l~s~~~~~~i~~w~~~~  101 (110)
                      .|++++-|..|++|.+-.
T Consensus       450 vLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  450 VLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             hhhccCCccceeeecCCc
Confidence            999999999999998844

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=3.6e-05  Score=52.12  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s   87 (110)
                      .+...+.+.+|+|||+.++..+..   ..+.+||+..+.              . ..+....+.....+|+|+|..++ +
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--------------~-~~l~~~~g~~~~~~~SPDG~~la~~  257 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--------------R-RVVANFKGSNSAPAWSPDGRTLAVA  257 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--------------E-EEeecCCCCccceEECCCCCEEEEE
Confidence            455678899999999988876643   358899998765              1 22332334556899999999866 5


Q ss_pred             ecCCCcEEEE--eCCCC
Q psy11100         88 SDETGLIIVW--MLYKC  102 (110)
Q Consensus        88 ~~~~~~i~~w--~~~~~  102 (110)
                      .+.++...+|  |...+
T Consensus       258 ~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        258 LSRDGNSQIYTVNADGS  274 (427)
T ss_pred             EccCCCceEEEEECCCC
Confidence            5667765555  44433

>KOG2315|consensus

Probab=98.13  E-value=2.5e-05  Score=53.47  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             CCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..++-.++-|+|.|++++.++.   .|.+-+||+....              .+..+...  ...-+.|+|+|++|.++.
T Consensus       310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------------~i~~~~a~--~tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------------LIAKFKAA--NTTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--------------hccccccC--CceEEEEcCCCcEEEEEe
Confidence            4577788999999998776654   4689999999855              33333332  234589999999988876


Q ss_pred             ------CCCcEEEEeCCCC
Q psy11100         90 ------ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ------~~~~i~~w~~~~~  102 (110)
                            -|+.+++|++...
T Consensus       374 TaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  374 TAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccccEEecCCeEEEEecCc
Confidence                  3677889987543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=3.1e-05  Score=52.48  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s   87 (110)
                      .+...+...+|+|||+.++..+..   ..+.+|++..+.               ...+....+.....+|+|+|..++ +
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------------~~~l~~~~g~~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------------RELVASFRGINGAPSFSPDGRRLALT  265 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------------EEEeccCCCCccCceECCCCCEEEEE
Confidence            345578889999999988877643   358899987664               122223334445789999999764 4


Q ss_pred             ecCCC--cEEEEeCCCCCC
Q psy11100         88 SDETG--LIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~--~i~~w~~~~~~~  104 (110)
                      .+.++  .|++||+.++..
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             EeCCCCceEEEEECCCCCe
Confidence            44444  699999987753

>KOG1272|consensus

Probab=98.12  E-value=9.3e-06  Score=54.63  Aligned_cols=69  Identities=12%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      -|.++|.++++.++|+++++.+.|..++|||+..-.              -+.+... .-....+++|..|.+  .++..
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--------------ql~t~~t-p~~a~~ls~SqkglL--A~~~G  353 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--------------QLHTYRT-PHPASNLSLSQKGLL--ALSYG  353 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeecccc--------------ccceeec-CCCccccccccccce--eeecC
Confidence            599999999999999999999999999999999754              1122211 133456677666543  33334


Q ss_pred             CcEEEE
Q psy11100         92 GLIIVW   97 (110)
Q Consensus        92 ~~i~~w   97 (110)
                      ..+.+|
T Consensus       354 ~~v~iw  359 (545)
T KOG1272|consen  354 DHVQIW  359 (545)
T ss_pred             Ceeeee
Confidence            577788

>KOG4714|consensus

Probab=98.11  E-value=2.7e-06  Score=53.53  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=60.1

Q ss_pred             ceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEecCCCc
Q psy11100         16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSDETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~~~~   93 (110)
                      .|.+++-+|. .+.+++|..+|.+-+||.+....             +...++.|..+++.+.|+|. +..|.+++.||.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs  247 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS  247 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccc-------------hHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence            4888888896 56788999999999999987641             33456789999999999995 566999999999


Q ss_pred             EEEEeCCC
Q psy11100         94 IIVWMLYK  101 (110)
Q Consensus        94 i~~w~~~~  101 (110)
                      +..||..+
T Consensus       248 lw~wdas~  255 (319)
T KOG4714|consen  248 LWHWDAST  255 (319)
T ss_pred             EEEEcCCC
Confidence            99999774

>KOG1240|consensus

Probab=98.10  E-value=5.7e-05  Score=56.11  Aligned_cols=83  Identities=17%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .|.+.+..++.+++ +.++++|+.||+|++|+..+....   .    .......++......+..+.+-+.+..++.++.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~----~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---G----GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---c----ceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            36777778888776 589999999999999999875411   0    111122334435677888888888999999999


Q ss_pred             CCcEEEEeCCC
Q psy11100         91 TGLIIVWMLYK  101 (110)
Q Consensus        91 ~~~i~~w~~~~  101 (110)
                      ||.|.+.++..
T Consensus      1119 DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1119 DGSVRVLRIDH 1129 (1431)
T ss_pred             CCeEEEEEccc
Confidence            99999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=8.5e-05  Score=50.41  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             CCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-   88 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-   88 (110)
                      +...+...+|+|||+.++..+.   +..+.++++..+.               ...+......+...+|+|+|..++.. 
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---------------~~~l~~~~~~~~~~~~SPDG~~La~~~  261 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---------------VRQVASFPRHNGAPAFSPDGSKLAFAL  261 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---------------eEEccCCCCCcCCeEECCCCCEEEEEE
Confidence            4457889999999998876542   3468888887654               11222222334468999999987654 


Q ss_pred             cCCC--cEEEEeCCCCCC
Q psy11100         89 DETG--LIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~--~i~~w~~~~~~~  104 (110)
                      +.++  .|.+||+.++..
T Consensus       262 ~~~g~~~I~~~d~~tg~~  279 (429)
T PRK03629        262 SKTGSLNLYVMDLASGQI  279 (429)
T ss_pred             cCCCCcEEEEEECCCCCE
Confidence            3344  588899987653

>KOG2139|consensus

Probab=98.10  E-value=6.9e-05  Score=49.29  Aligned_cols=89  Identities=20%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             CCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCccc-ccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-C
Q psy11100         14 NTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVA-AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-E   90 (110)
Q Consensus        14 ~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~   90 (110)
                      +-.|.|++|-|.+ ..++.|+. +-+++|............+ -..... .+....+| ..|.+++|++||..+++++ .
T Consensus       140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~-qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHL-QVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccch-hheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            4579999999964 45666665 4589998764320000000 000000 11222333 7899999999999998887 4


Q ss_pred             CCcEEEEeCCCCCCh
Q psy11100         91 TGLIIVWMLYKCNDD  105 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~  105 (110)
                      +..|.+||+.++..+
T Consensus       217 sssi~iWdpdtg~~~  231 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKI  231 (445)
T ss_pred             cceEEEEcCCCCCcc
Confidence            678999999988754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.08  E-value=9.3e-05  Score=50.02  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s   87 (110)
                      .+...+....|+|||+.|+..+..   ..+.+|++..+.               ...+....+.+...+|+|+|+.++ +
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------------~~~l~~~~g~~~~~~~SpDG~~la~~  260 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------------REQITNFEGLNGAPAWSPDGSKLAFV  260 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------------EEEccCCCCCcCCeEECCCCCEEEEE
Confidence            345677889999999988776543   358888887664               122222233445689999999866 4


Q ss_pred             ecCCC--cEEEEeCCCCCC
Q psy11100         88 SDETG--LIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~--~i~~w~~~~~~~  104 (110)
                      ...++  .|.++|+.++..
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             EccCCCceEEEEECCCCCe
Confidence            44444  688889887653

>KOG1963|consensus

Probab=98.08  E-value=4e-05  Score=54.65  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=61.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      |..+|.+++|+++|.+|.+|+..|.+.+|...++.               .+-+..-.+.|..+.+|||+...+....|+
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCC---------------cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence            66899999999999999999999999999998875               112233467889999999999988888899


Q ss_pred             cEEEEeCCC
Q psy11100         93 LIIVWMLYK  101 (110)
Q Consensus        93 ~i~~w~~~~  101 (110)
                      .|.+....+
T Consensus       315 qI~li~~~d  323 (792)
T KOG1963|consen  315 QIHLIKASD  323 (792)
T ss_pred             eEEEEeccc
Confidence            988776543

>KOG4547|consensus

Probab=98.05  E-value=4.7e-05  Score=52.24  Aligned_cols=82  Identities=13%  Similarity=-0.026  Sum_probs=70.9

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|.+.|.++.++.+-.++-+++.|+.+..|+.....              .+...+.....+.+++.+|||..+++++ 
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--------------~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--------------IIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccce--------------eeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            4789999999999988889999999999999999876              6677777888899999999999888775 


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                       ++|.+||++++..++.+
T Consensus       164 -~~ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  164 -RQIKVLDIETKEVVITF  180 (541)
T ss_pred             -ceEEEEEccCceEEEEe
Confidence             78999999998876643

>KOG2321|consensus

Probab=98.05  E-value=4.6e-05  Score=52.66  Aligned_cols=83  Identities=17%  Similarity=0.378  Sum_probs=61.9

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-----CCCeEEEEEcCCCCeEEE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-----SGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s   87 (110)
                      ..+.+.++..++...++++|..+|.|..||..... .++...       .......|     .-.|+.+.|+.+|-.++.
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~-------~~~~v~s~pg~~~~~svTal~F~d~gL~~aV  245 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLD-------AASSVNSHPGGDAAPSVTALKFRDDGLHVAV  245 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhh-hheeee-------cccccCCCccccccCcceEEEecCCceeEEe
Confidence            34789999999999999999999999999987643 011110       11111112     234899999999989999


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      |..+|.+.++|++..+
T Consensus       246 Gts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASK  261 (703)
T ss_pred             eccCCcEEEEEcccCC
Confidence            9999999999998754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.98  E-value=0.00018  Score=48.27  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-Ee
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SS   88 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~   88 (110)
                      +...+....|+|+|+.++.....   ..+++|++..+.               ...+..+...+..++|+|+|..++ +.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------------~~~~~~~~~~~~~~~~spDg~~l~~~~  252 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------------REKVASFPGMNGAPAFSPDGSKLAVSL  252 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------------EEEeecCCCCccceEECCCCCEEEEEE
Confidence            44567788999999998877643   368899988764               122333445566789999998765 44


Q ss_pred             cCC--CcEEEEeCCCCC
Q psy11100         89 DET--GLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~--~~i~~w~~~~~~  103 (110)
                      +.+  ..|++|++.++.
T Consensus       253 ~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CCCCCccEEEEECCCCC
Confidence            433  458889988764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280|consensus

Probab=97.98  E-value=8.3e-05  Score=47.65  Aligned_cols=78  Identities=15%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-eeccCCCeEEEEEcCC-CCeEEE
Q psy11100         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQGHSGKVRAIIWNEQ-YEKLTS   87 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~s   87 (110)
                      .+|.-+....+|+-. .+.+.+|+.|+.+..||++...             ..+.. .+.|...|.++.-||- +..+++
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-------------~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-------------TFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-------------ceeeecceeeecceEEEecCCCCCceEEE
Confidence            367778888888764 5678999999999999999432             02222 4557788888888764 556999


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      |+.|-.|++||.++
T Consensus       229 GsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  229 GSYDECIRVLDTRN  242 (339)
T ss_pred             eccccceeeeehhc
Confidence            99999999999884

>KOG4640|consensus

Probab=97.96  E-value=8.5e-05  Score=51.77  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeE-EEEEcCCCCeEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR-AIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~~~~i   94 (110)
                      .+.-+.|+|.-.++|.+..+|.+-+.++...+               +-++.-+...+. +++|.|||..++-+-.||+|
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---------------lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I   86 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQR---------------LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTI   86 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEeccce---------------eEeccCCCCccceeeeecCCCCEEEEEecCCeE
Confidence            56678999999999999999999888888543               455555555555 99999999999999999999


Q ss_pred             EEEeCCCCCChhh
Q psy11100         95 IVWMLYKCNDDDE  107 (110)
Q Consensus        95 ~~w~~~~~~~~~~  107 (110)
                      .+.|++++-.+..
T Consensus        87 ~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   87 RLHDVEKGGRLVS   99 (665)
T ss_pred             EEEEccCCCceec
Confidence            9999998876543

>KOG1645|consensus

Probab=97.96  E-value=4.7e-05  Score=50.56  Aligned_cols=77  Identities=12%  Similarity=0.250  Sum_probs=61.9

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      .+...|..++|+|..+ ++..++.+..+++.|+.+..              ....+..+ ..+.+++|.-+..+ +..|.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------------~vssy~a~-~~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------------VVSSYIAY-NQIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccce--------------eeeheecc-CCceeeeeccCCcceeEEec
Confidence            4666799999999877 68888999999999999876              34444444 78899999988777 66677


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .+|.|.++|++...
T Consensus       256 ~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  256 QNGMVLVYDMRQPE  269 (463)
T ss_pred             cCceEEEEEccCCC
Confidence            89999999998643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.00021  Score=48.57  Aligned_cols=74  Identities=14%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             CceEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-
Q psy11100         15 TKVNCLAWHQNQGWIAVG-GDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-   90 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-   90 (110)
                      +.+....|+|||+.|+.. +.++  .+.+||+..+.               ...+..+...+....|+|+|+.++..+. 
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------------EEEccCCCCCcCceEECCCCCEEEEEeCC
Confidence            345568999999987754 4444  48888887654               2233333345678999999998765554 


Q ss_pred             CCc--EEEEeCCCCC
Q psy11100         91 TGL--IIVWMLYKCN  103 (110)
Q Consensus        91 ~~~--i~~w~~~~~~  103 (110)
                      ++.  |..+|+.++.
T Consensus       308 ~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        308 AGRPQVYKVNINGGA  322 (429)
T ss_pred             CCCceEEEEECCCCC
Confidence            344  5555666553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.91  E-value=0.00029  Score=48.12  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +.-+.|.++..+|+|.+++.+.....+.+.|+.++.              ....-+...+.|..+.|+|++++++-+--+
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn--------------v~~idkS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN--------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--------------eeEecccccceeEEEEEcCCceeEEEecCc
Confidence            345789999999999999999988899999999887              333334556889999999999999988765


Q ss_pred             C----cEEEEeCCCCCCh
Q psy11100         92 G----LIIVWMLYKCNDD  105 (110)
Q Consensus        92 ~----~i~~w~~~~~~~~  105 (110)
                      |    .|+++|+..++..
T Consensus       465 gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         465 GYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             ceeeeeEEEEecCCCeEE
Confidence            5    4889998877653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.00015  Score=49.20  Aligned_cols=70  Identities=17%  Similarity=0.320  Sum_probs=47.5

Q ss_pred             ceEEEEEecCCCEEEEEe-cCCcEEEE--EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-cCC
Q psy11100         16 KVNCLAWHQNQGWIAVGG-DDGLLKVL--KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-DET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~   91 (110)
                      ....++|+|||+.|+.+. .++...+|  |+....               ...+..+...+....|+|+|+.++.+ +.+
T Consensus       249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~  313 (429)
T PRK01742        249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRS  313 (429)
T ss_pred             ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---------------eEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence            344689999999887764 67776665  444432               23344455567789999999986644 456


Q ss_pred             CcEEEEeCC
Q psy11100         92 GLIIVWMLY  100 (110)
Q Consensus        92 ~~i~~w~~~  100 (110)
                      +...+|++.
T Consensus       314 g~~~I~~~~  322 (429)
T PRK01742        314 GSPQVYRMS  322 (429)
T ss_pred             CCceEEEEE
Confidence            777777654

>smart00320 WD40 WD40 repeats

Probab=97.90  E-value=3.6e-05  Score=32.94  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=28.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~   42 (110)
                      .|...+.++.|++++..+++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            6788999999999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.87  E-value=0.00025  Score=48.49  Aligned_cols=75  Identities=16%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             CCceEEEEEecCCCEEEEEec-CC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE-ec
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGD-DG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS-SD   89 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~   89 (110)
                      ...+....|+|||+.++..+. ++  .+.++|+..+.              . ..+....+.....+|+|+|+.++. .+
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--------------~-~~lt~~~g~~~~~~wSPDG~~La~~~~  281 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--------------R-EKVTSFPGINGAPRFSPDGKKLALVLS  281 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--------------e-EEecCCCCCcCCeeECCCCCEEEEEEe
Confidence            345678899999998877653 33  47778887654              1 112222223346899999998664 44


Q ss_pred             CCC--cEEEEeCCCCC
Q psy11100         90 ETG--LIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~--~i~~w~~~~~~  103 (110)
                      .++  .|+++|+.++.
T Consensus       282 ~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        282 KDGQPEIYVVDIATKA  297 (448)
T ss_pred             CCCCeEEEEEECCCCC
Confidence            455  47788887665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.85  E-value=0.00027  Score=47.19  Aligned_cols=74  Identities=20%  Similarity=0.279  Sum_probs=52.9

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCcEEE
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGLIIV   96 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~i~~   96 (110)
                      ..+.++|||+++...+.|+.+.++|+.+..              ...++.. ......+++|++|++++.++ .++.+.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------------~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK--------------VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSS--------------EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCccc--------------EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeE
Confidence            346789999998888999999999999886              5555543 23457899999999976555 6889999


Q ss_pred             EeCCCCCChh
Q psy11100         97 WMLYKCNDDD  106 (110)
Q Consensus        97 w~~~~~~~~~  106 (110)
                      +|.++.+.+.
T Consensus       105 ~D~~tle~v~  114 (369)
T PF02239_consen  105 IDAETLEPVK  114 (369)
T ss_dssp             EETTT--EEE
T ss_pred             ecccccccee
Confidence            9988765543

...

>KOG4547|consensus

Probab=97.79  E-value=0.00039  Score=47.94  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-----CCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-----YEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~   86 (110)
                      ..+..+..++.+|||..+++++  +.+++||+.+..              ...++.+|.+.|++++|--.     |.++.
T Consensus       142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke--------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE--------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             cCCCccceEEEcCCCCEEEecc--ceEEEEEccCce--------------EEEEecCCCcceEEEEEEEeccccccceee
Confidence            4556788899999999888876  689999999987              78999999999999999766     66654


Q ss_pred             E-ecCCCcEEEEeCCCC
Q psy11100         87 S-SDETGLIIVWMLYKC  102 (110)
Q Consensus        87 s-~~~~~~i~~w~~~~~  102 (110)
                      + ...+.-+.+|-..+.
T Consensus       206 ssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEKE  222 (541)
T ss_pred             eccccccceeEEEEEcc
Confidence            4 445666778876653

>KOG4190|consensus

Probab=97.77  E-value=4.4e-05  Score=52.94  Aligned_cols=90  Identities=16%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|+..|..++--.+.+-+++++.|.+|++|.++...+..+..       .+-.+...|+..|.++.|-.+-+.++++ 
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------aCQfTY~aHkk~i~~igfL~~lr~i~Sc-  802 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------ACQFTYQAHKKPIHDIGFLADLRSIASC-  802 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------eeeeEhhhccCcccceeeeeccceeeec-
Confidence            34888888887665566668899999999999998654221110       1446677899999999998877777766 


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                       |+-|.+||+--|+.+.+|
T Consensus       803 -D~giHlWDPFigr~Laq~  820 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQM  820 (1034)
T ss_pred             -cCcceeecccccchhHhh
Confidence             688999998877766544

>KOG1517|consensus

Probab=97.75  E-value=0.00043  Score=51.22  Aligned_cols=83  Identities=20%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             ccCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC--eEEEEEcCCCCe-
Q psy11100          9 IAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK--VRAIIWNEQYEK-   84 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~-   84 (110)
                      ++.+-..-++++.-+. .|+.+++|..||.|++||.+-..    .     .  ......+.|+..  |..+.+.+.|-. 
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~----~-----d--s~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP----P-----D--SLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCC----c-----c--ccceeecccCCcccceeEEeecCCCcc
Confidence            4444445566665544 47889999999999999987543    0     0  134566777766  999999887776 


Q ss_pred             EEEecCCCcEEEEeCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~  102 (110)
                      +++++.+|.|++||++..
T Consensus      1272 lvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             eeeeccCCeEEEEecccC
Confidence            999999999999999874

>KOG0974|consensus

Probab=97.75  E-value=0.00022  Score=51.94  Aligned_cols=69  Identities=20%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                      +++.-++++|+.-+.+.+|+.....              ....+.+|.+.+..+.|+.+|..+++++.|.++++|++.+.
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn--------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDN--------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccC--------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence            5555578899999999999988443              11257899999999999999999999999999999999987


Q ss_pred             CCh
Q psy11100        103 NDD  105 (110)
Q Consensus       103 ~~~  105 (110)
                      +..
T Consensus       208 ~~~  210 (967)
T KOG0974|consen  208 EVL  210 (967)
T ss_pred             ccc
Confidence            754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.00058  Score=46.47  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=47.7

Q ss_pred             ceEEEEEecCCCEEEEEe-cCCcEEEEEc--CCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC-
Q psy11100         16 KVNCLAWHQNQGWIAVGG-DDGLLKVLKL--DTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET-   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~-~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~-   91 (110)
                      .....+|+|||+.|+..+ .++...+|..  ....   +          ....+......+....|||+|+.++....+ 
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~----------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~  348 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---Q----------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK  348 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---c----------ceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence            345679999999877655 4565555543  3211   0          112233334456788999999987765432 


Q ss_pred             --CcEEEEeCCCCCC
Q psy11100         92 --GLIIVWMLYKCND  104 (110)
Q Consensus        92 --~~i~~w~~~~~~~  104 (110)
                        ..|.+||+.++..
T Consensus       349 g~~~I~v~dl~~g~~  363 (428)
T PRK01029        349 GVRQICVYDLATGRD  363 (428)
T ss_pred             CCcEEEEEECCCCCe
Confidence              4688999887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.00053  Score=46.61  Aligned_cols=76  Identities=8%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             CCCceEEEEEecCCCEEE-EEecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIA-VGGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +.+.+...+|+|||+.++ +.+.++.  +.++|+....               ...+..+........|+|+|+.++..+
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~Lt~~~~~~~~~~~spDG~~i~f~s  308 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------------TTRLTDSPAIDTSPSYSPDGSQIVFES  308 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------------eEEccCCCCccCceeEcCCCCEEEEEE
Confidence            445667889999998765 4455555  6666776654               233444444556789999999876554


Q ss_pred             -CC--CcEEEEeCCCCC
Q psy11100         90 -ET--GLIIVWMLYKCN  103 (110)
Q Consensus        90 -~~--~~i~~w~~~~~~  103 (110)
                       .+  ..|+++|+..+.
T Consensus       309 ~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        309 DRSGSPQLYVMNADGSN  325 (435)
T ss_pred             CCCCCCeEEEEECCCCC
Confidence             33  357888876553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.00079  Score=45.83  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             CceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-c-
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-D-   89 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~-   89 (110)
                      ..+....|+|||+.++.....   ..+.+||+..+.              . ..+......+....|+|+|+.++.. . 
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~--------------~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR--------------D-YQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC--------------e-EEccCCCCCccceEECCCCCEEEEEECC
Confidence            456778999999988766543   358888887765              1 2222222345678999999986643 3 


Q ss_pred             -CCCcEEEEeCCCCCC
Q psy11100         90 -ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 -~~~~i~~w~~~~~~~  104 (110)
                       ....|.++|+..+..
T Consensus       392 ~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        392 SNESELYLISLITKKT  407 (428)
T ss_pred             CCCceEEEEECCCCCE
Confidence             235688888876653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.70  E-value=0.00069  Score=44.23  Aligned_cols=79  Identities=10%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             CceEEEEEecCCCEEEEE-ecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-CC
Q psy11100         15 TKVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-TG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~~   92 (110)
                      .....++++|+++++.++ ..++.|.+||+....    .......   ...... .......++|+|+|+++..++. ++
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g----~l~~~~~---~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~  197 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG----HLVAQEP---AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNS  197 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC----cccccCC---CceecC-CCCCCceEEECCCCCEEEEEecCCC
Confidence            345678899999887544 456899999997632    0000000   000111 1234567999999999766664 89


Q ss_pred             cEEEEeCCC
Q psy11100         93 LIIVWMLYK  101 (110)
Q Consensus        93 ~i~~w~~~~  101 (110)
                      .|.+|++..
T Consensus       198 ~v~v~~~~~  206 (330)
T PRK11028        198 SVDVWQLKD  206 (330)
T ss_pred             EEEEEEEeC
Confidence            999999873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.00097  Score=45.34  Aligned_cols=75  Identities=12%  Similarity=0.002  Sum_probs=47.0

Q ss_pred             CceEEEEEecCCCEEEEEe-cCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGG-DDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +.....+|+|||+.++..+ .++.  +.++++..+.               ...+..........+|+|+|+.++....+
T Consensus       292 ~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~  356 (433)
T PRK04922        292 GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---------------AERLTFQGNYNARASVSPDGKKIAMVHGS  356 (433)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------------eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence            3446689999999877665 3444  5555655443               11122222334468999999997765433


Q ss_pred             ---CcEEEEeCCCCCC
Q psy11100         92 ---GLIIVWMLYKCND  104 (110)
Q Consensus        92 ---~~i~~w~~~~~~~  104 (110)
                         ..|.+||+.++..
T Consensus       357 ~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        357 GGQYRIAVMDLSTGSV  372 (433)
T ss_pred             CCceeEEEEECCCCCe
Confidence               2588999877653

>KOG1064|consensus

Probab=97.68  E-value=4.6e-05  Score=58.65  Aligned_cols=71  Identities=15%  Similarity=0.307  Sum_probs=56.1

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .-|.+.++++++-|..+.+++|+.+|.|++||+....              ..++++.         +. ....|.+++.
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq--------------l~h~~~~---------~~-~~~~f~~~ss 2388 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ--------------LRHTFQA---------LD-TREYFVTGSS 2388 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH--------------HHHHhhh---------hh-hhheeeccCc
Confidence            5688999999999999999999999999999998754              2233322         33 3455889999


Q ss_pred             CCcEEEEeCCCCCCh
Q psy11100         91 TGLIIVWMLYKCNDD  105 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~  105 (110)
                      .|.+++|++..-..+
T Consensus      2389 ~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             ccceEEEEccccchh
Confidence            999999998765443

>KOG2315|consensus

Probab=97.67  E-value=0.00093  Score=46.11  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             eccCCCCCceEEEEEecCCCE--EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGW--IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~--l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      .......++|.++.|+|+++-  ++.|-+--.+-++|++...               .+.+  -.+.-+++-|||.|+.+
T Consensus       264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---------------v~df--~egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---------------VFDF--PEGPRNTAFFNPHGNII  326 (566)
T ss_pred             EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---------------eEeC--CCCCccceEECCCCCEE
Confidence            455566899999999999864  4555666678899888643               3333  34666789999999997


Q ss_pred             EEec---CCCcEEEEeCCCCCChhh
Q psy11100         86 TSSD---ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        86 ~s~~---~~~~i~~w~~~~~~~~~~  107 (110)
                      +.++   ..|.+-+||+.+.+.+..
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccc
Confidence            7666   457899999988665543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.67  E-value=0.00078  Score=44.00  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             EEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCcEE
Q psy11100         18 NCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGLII   95 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~i~   95 (110)
                      ..+.++|+++++.++.. ++.+.+|++.....   .       ......... ......++++|+|++++.+. .+++|.
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~---~-------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~  299 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGS---V-------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHIS  299 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCC---e-------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEE
Confidence            35889999998888754 67899999865320   0       001111111 12345789999999977655 488999


Q ss_pred             EEeCC
Q psy11100         96 VWMLY  100 (110)
Q Consensus        96 ~w~~~  100 (110)
                      +|++.
T Consensus       300 v~~~~  304 (330)
T PRK11028        300 VYEID  304 (330)
T ss_pred             EEEEc
Confidence            99764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.66  E-value=0.0023  Score=40.92  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             CCCceEEEEEecCCCEEEEEec-CC----------cEEEEEcCCCCCcCCccc---------ccccceeeeEEe------
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD-DG----------LLKVLKLDTGKESTGQVA---------AANVNLAMNQSL------   66 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~-~~----------~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~------   66 (110)
                      +...|.+..++|.-++|..|+. ..          -+..|++-...--.++..         ....++..+..+      
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            4568999999999887666543 11          255666543320001000         111122111111      


Q ss_pred             eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ......|..+..||+|+.|++...+|.|.+|++.+-+...+++
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            1134678999999999999999999999999999877777665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.001  Score=45.14  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=47.5

Q ss_pred             CCCceEEEEEecCCCEEEEEec-CCcEEEEEcC--CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLD--TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +.+......|+|||+.++..+. ++...+|...  ...               ...+..........+|||+|+.++..+
T Consensus       282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---------------AQRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---------------eEEEecCCCCcCceEECCCCCEEEEEE
Confidence            3344566889999998775543 4566666554  222               111111222234578999999987665


Q ss_pred             CCC---cEEEEeCCCCC
Q psy11100         90 ETG---LIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~---~i~~w~~~~~~  103 (110)
                      .++   .|.+||+.++.
T Consensus       347 ~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             ccCCcEEEEEEECCCCC
Confidence            443   59999988765

>KOG4497|consensus

Probab=97.59  E-value=0.00066  Score=44.46  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             ceEEEEEecCCCEEEE-EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCCc
Q psy11100         16 KVNCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~~   93 (110)
                      +|.-+.|..|...+.+ ...++.|.+|++....              ....+......+..+.|||+|++ +.+..-+-.
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lr  115 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR  115 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecce--------------eEEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence            4555778888766544 4678899999998765              34455555677889999999977 556667889


Q ss_pred             EEEEeCCCCC
Q psy11100         94 IIVWMLYKCN  103 (110)
Q Consensus        94 i~~w~~~~~~  103 (110)
                      |.+|.+.+.+
T Consensus       116 iTVWSL~t~~  125 (447)
T KOG4497|consen  116 ITVWSLNTQK  125 (447)
T ss_pred             EEEEEeccce
Confidence            9999987654

>KOG4532|consensus

Probab=97.59  E-value=0.0018  Score=41.46  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      +..++++|+++++++-+....|..|.++...+          .+ .......-++.-.+..|+.....+|.+..||++.+
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----------y~-~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----------YI-ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccc----------ee-eeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence            77789999999999998888899888875431          00 11123333455668899999999999999999999


Q ss_pred             EeCCCCC
Q psy11100         97 WMLYKCN  103 (110)
Q Consensus        97 w~~~~~~  103 (110)
                      ||++.-.
T Consensus       230 ~DVR~~~  236 (344)
T KOG4532|consen  230 YDVRNMA  236 (344)
T ss_pred             EEecccc
Confidence            9998644

>KOG4532|consensus

Probab=97.57  E-value=0.0016  Score=41.60  Aligned_cols=83  Identities=14%  Similarity=0.040  Sum_probs=59.7

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEEecCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTSSDET   91 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~~~   91 (110)
                      +..-.+..|+.....+|++..||++.+||++....   +....      ..+-..|.+.+..+.|++-|..  |....+-
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t---pm~~~------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf  273 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT---PMAEI------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHF  273 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEeccccc---chhhh------cccCCCCCCceEEEEecCCCcceEEEEecCc
Confidence            34556788888888899999999999999997651   11000      1122347899999999987765  4455567


Q ss_pred             CcEEEEeCCCCCCh
Q psy11100         92 GLIIVWMLYKCNDD  105 (110)
Q Consensus        92 ~~i~~w~~~~~~~~  105 (110)
                      +.+.+.|++++...
T Consensus       274 s~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  274 SRVHVVDTRNYVNH  287 (344)
T ss_pred             ceEEEEEcccCcee
Confidence            78889999887654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.56  E-value=0.00054  Score=32.19  Aligned_cols=32  Identities=31%  Similarity=0.709  Sum_probs=28.8

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~   45 (110)
                      .+.|.++.|+|...++|.+..+|.|.++++..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            35799999999999999999999999999853

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.54  E-value=0.002  Score=43.32  Aligned_cols=74  Identities=19%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             CceEEEEEecCCCEEEEEec-CC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGD-DG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +......|+|+|+.++..+. ++  .+.++++....               ...+..+........|+|+|..++....+
T Consensus       278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~  342 (417)
T TIGR02800       278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------------VRRLTFRGGYNASPSWSPDGDLIAFVHRE  342 (417)
T ss_pred             CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------------EEEeecCCCCccCeEECCCCCEEEEEEcc
Confidence            33446789999998766543 33  46666766543               12233344556678999999998777665


Q ss_pred             C---cEEEEeCCCCC
Q psy11100         92 G---LIIVWMLYKCN  103 (110)
Q Consensus        92 ~---~i~~w~~~~~~  103 (110)
                      +   .|.+||+.++.
T Consensus       343 ~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       343 GGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCceEEEEEeCCCCC
Confidence            4   68888887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334|consensus

Probab=97.53  E-value=0.0004  Score=47.31  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-------------CCccc----------cccc----------
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-------------TGQVA----------AANV----------   58 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-------------~~~~~----------~~~~----------   58 (110)
                      +|.+-|..+.|+..|..+++|+.|..+.+||.....-.             .+..+          ....          
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            69999999999999999999999999999996543211             01100          0000          


Q ss_pred             -ceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCCcEEEEeCCCCCC
Q psy11100         59 -NLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        59 -~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~~~  104 (110)
                       ...-...+..|.+.|..++.-|.... |.+++.|+.+.-.|++.+.-
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence             11112334457888999999998887 99999999999999887653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.52  E-value=0.0018  Score=43.89  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             CceEEEEEecCCCEEEE-EecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-C
Q psy11100         15 TKVNCLAWHQNQGWIAV-GGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-E   90 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~   90 (110)
                      +.+....|+|||+.++. ...++  .+.++|+..+.               ...+..+........|+|+|..++..+ .
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~  307 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDR  307 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------------eEEcccCCCCcCCeEECCCCCEEEEEECC
Confidence            34556899999998764 44455  47777877654               122333444455688999999865444 3


Q ss_pred             CC--cEEEEeCCCCC
Q psy11100         91 TG--LIIVWMLYKCN  103 (110)
Q Consensus        91 ~~--~i~~w~~~~~~  103 (110)
                      ++  .|+.+++.+++
T Consensus       308 ~g~~~iy~~d~~~g~  322 (430)
T PRK00178        308 GGKPQIYKVNVNGGR  322 (430)
T ss_pred             CCCceEEEEECCCCC
Confidence            33  57777877665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.45  E-value=0.00082  Score=31.58  Aligned_cols=34  Identities=18%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         70 SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        70 ~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ...|..++|+|...+++.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356889999999999999999999999999 4443

>KOG3881|consensus

Probab=97.42  E-value=0.0014  Score=43.54  Aligned_cols=77  Identities=4%  Similarity=-0.069  Sum_probs=63.4

Q ss_pred             eEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         17 VNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ++++.|-|.  ...++++..-+.|++||....+             .+..++......++++..-|.+..++.+...+.+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccC-------------cceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence            455677665  6678999999999999999776             2445666667889999999999999999999999


Q ss_pred             EEEeCCCCCChh
Q psy11100         95 IVWMLYKCNDDD  106 (110)
Q Consensus        95 ~~w~~~~~~~~~  106 (110)
                      ..+|.++++...
T Consensus       272 ~~FD~r~~kl~g  283 (412)
T KOG3881|consen  272 AKFDLRGGKLLG  283 (412)
T ss_pred             heecccCceeec
Confidence            999999887543

>KOG0882|consensus

Probab=97.41  E-value=0.0014  Score=44.54  Aligned_cols=98  Identities=4%  Similarity=-0.056  Sum_probs=69.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC-CcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK-ESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      -|.++|.++.+.|-+....+....|.|.-|.....- .+..........-.-+..+........++.|+|+|..+..-+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            488999999999999999999999999999888511 0001110000000001122223456678999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~~  109 (110)
                      |-.|+++++.+|+..+++-
T Consensus       222 DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccEEEEEEeccchhhhhhh
Confidence            9999999999999998874

>KOG2314|consensus

Probab=97.36  E-value=0.00073  Score=46.89  Aligned_cols=74  Identities=12%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec--------
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD--------   89 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--------   89 (110)
                      +-+.|||.|.+|++....| |.+|.-..-.              .++.+  ....|..+.|||....|++-+        
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~--------------r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD--------------RIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHH--------------HHHhc--cCCCceeeecCCccceEEEecCCccccCc
Confidence            3478999999999987655 7778666543              22333  235677889999999888765        


Q ss_pred             ---CCCcEEEEeCCCCCChhhh
Q psy11100         90 ---ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ---~~~~i~~w~~~~~~~~~~~  108 (110)
                         ....+++||+++|...+.+
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF  298 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSF  298 (698)
T ss_pred             ccCCCceEEEEEccccchhcce
Confidence               2246999999999877654

>KOG1240|consensus

Probab=97.35  E-value=0.0037  Score=47.10  Aligned_cols=93  Identities=23%  Similarity=0.246  Sum_probs=63.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc---CCccc-----------------ccccc-eee---------
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES---TGQVA-----------------AANVN-LAM---------   62 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~~-----------------~~~~~-~~~---------   62 (110)
                      ..+.+.++...+.+..+|.++.||.|.+.+++.....   ..+.+                 ..... +..         
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            4567888888999999999999999999998762111   00000                 00011 000         


Q ss_pred             -----------eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         63 -----------NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        63 -----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                                 ........+.|++++.+|.+.+++.|+..|.+.+||++-+--+
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence                       0011122478999999999999999999999999999865433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.0037  Score=42.85  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=46.4

Q ss_pred             ceEEEEEecCCCEEEE-EecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC
Q psy11100         16 KVNCLAWHQNQGWIAV-GGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~   91 (110)
                      ......|+|||+.++. .+.++.  +.++|+..+.               ...+..+.......+|+|+|..++..+ .+
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------------LTRITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------------eEECccCCCCccceEECCCCCEEEEEECCC
Confidence            3446799999997764 455665  6666776553               223333344556789999999865543 33


Q ss_pred             C--cEEEEeCCCCC
Q psy11100         92 G--LIIVWMLYKCN  103 (110)
Q Consensus        92 ~--~i~~w~~~~~~  103 (110)
                      +  .|.++|+.+++
T Consensus       328 g~~~Iy~~dl~~g~  341 (448)
T PRK04792        328 GKPQIYRVNLASGK  341 (448)
T ss_pred             CCceEEEEECCCCC
Confidence            3  46666776654

>KOG1064|consensus

Probab=97.33  E-value=0.00066  Score=52.78  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc---CC--c--------------cc-cccccee---------eeEE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES---TG--Q--------------VA-AANVNLA---------MNQS   65 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~---~~--~--------------~~-~~~~~~~---------~~~~   65 (110)
                      ++|+.+.|+-+|.....+..||.+.+|.+....+.   +.  .              .. +...+.-         ....
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence            66777888888998888899999999987643221   10  0              00 0000000         0111


Q ss_pred             eeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        66 ~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ...|.+.+.++++.|..+.+++|+.+|.+++||++..+....+.
T Consensus      2332 ~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2332 HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            25678889999999999999999999999999999877666553

>KOG2321|consensus

Probab=97.32  E-value=0.00091  Score=46.58  Aligned_cols=64  Identities=19%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100         29 IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        29 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      |..++....|+-+++..+.              .+..+....+.++++..++...+|++|+.+|.+.+||.+..+.+.
T Consensus       148 ly~~gsg~evYRlNLEqGr--------------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~  211 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGR--------------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG  211 (703)
T ss_pred             EEEeecCcceEEEEccccc--------------cccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence            3444445567777887776              455666677899999999999999999999999999998776543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.29  E-value=0.01  Score=40.87  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCC-cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG-LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +.++|.+.|.=..+..+++.++.|..|| .+-++|...+.               ...+...-+.|..+..+++|..++.
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------~kr~e~~lg~I~av~vs~dGK~~vv  418 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------VKRIEKDLGNIEAVKVSPDGKKVVV  418 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------EEEeeCCccceEEEEEcCCCcEEEE
Confidence            4557888888888888888888899888 89999998875               3455566688999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      +.+...|.+.|+.+|+.
T Consensus       419 aNdr~el~vididngnv  435 (668)
T COG4946         419 ANDRFELWVIDIDNGNV  435 (668)
T ss_pred             EcCceEEEEEEecCCCe
Confidence            99999999999998875

>KOG0322|consensus

Probab=97.27  E-value=0.0016  Score=41.50  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|..+|.++.+.+.-..=++|+.+-.+.+|.+....   +.       ++......-..-.|..+..-||++.+++++=|
T Consensus       203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~---gs-------lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD  272 (323)
T KOG0322|consen  203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST---GS-------LQIRKEITLKNPGVSGVRIRPDGKILATAGWD  272 (323)
T ss_pred             hccCcceeeeechhhcCCcCCCccccceeeeecccc---Cc-------ccccceEEecCCCccceEEccCCcEEeecccC
Confidence            588899999987743333566666678888887653   01       11111222234567788999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      +.|++|..++.+-+--+
T Consensus       273 ~RiRVyswrtl~pLAVL  289 (323)
T KOG0322|consen  273 HRIRVYSWRTLNPLAVL  289 (323)
T ss_pred             CcEEEEEeccCCchhhh
Confidence            99999999988765443

>KOG4497|consensus

Probab=97.24  E-value=0.0019  Score=42.41  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             CceEEEEEecCCCEEEEEecC--CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDD--GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      -.+.-++|++|..++++....  +.+.+||+...+               +.....+...|..+.|.|.-..++.+....
T Consensus       319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------l~avLiQk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             cccceeeecCCceEEeeecCCCCceEEEEechhhh---------------hhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence            457779999999999987653  578899998765               344455677899999999888888887788


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      .+++|.+....
T Consensus       384 rLY~W~psg~~  394 (447)
T KOG4497|consen  384 RLYFWAPSGPR  394 (447)
T ss_pred             eEEEEcCCCce
Confidence            89999876543

>KOG0309|consensus

Probab=97.16  E-value=0.0015  Score=46.98  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             CCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +|+..++.+.|+|.. ..+++.+.|-.+..||..+..             .+......-......++|+.....+...++
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-------------~p~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-------------RPFYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCC-------------cceeeeecccccCceeeecccCcchhhhcc
Confidence            899999999999974 578999999999999999875             123333333455678999988777777777


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      ...+.+||.+.|.-
T Consensus       179 g~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGST  192 (1081)
T ss_pred             CCceEEEeccCCCc
Confidence            88999999998753

>KOG2079|consensus

Probab=97.15  E-value=0.0044  Score=46.15  Aligned_cols=67  Identities=24%  Similarity=0.317  Sum_probs=51.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC---CCeEEEEEcCCCCeEEEecC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS---GKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +++|++++|+.+|..++.|-.+|.|.+||...++              .++.+..+.   ..|..+.+..++..+++++.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k--------------~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK--------------ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCc--------------ceeeeeecCCccceEEEEEEeCCCcEEEEccC
Confidence            5799999999999999999999999999999876              444444443   34555666666667888888


Q ss_pred             CCcE
Q psy11100         91 TGLI   94 (110)
Q Consensus        91 ~~~i   94 (110)
                      .|.+
T Consensus       196 ~Gsf  199 (1206)
T KOG2079|consen  196 GGSF  199 (1206)
T ss_pred             CCce
Confidence            8873

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.15  E-value=0.0039  Score=41.76  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         30 AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        30 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ++-..++.|.+.|..+..              ....+......-..+.++|||+++..++.|+.|.++|+.+++.+.+++
T Consensus        10 V~~~~~~~v~viD~~t~~--------------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~   75 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNK--------------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK   75 (369)
T ss_dssp             EEEGGGTEEEEEETTT-S--------------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred             EEecCCCEEEEEECCCCe--------------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence            455668999999998876              556666543333457899999998878889999999999998776653

...

>KOG2041|consensus

Probab=97.14  E-value=0.0018  Score=46.52  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=63.1

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..||.+.|..+.|+.+.+.|.++..+|-+.+|-+..+.            | ...-+.. ..+.|.++.|+-+|+.++.+
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs------------W-~EEMiNnRnKSvV~SmsWn~dG~kIcIv  133 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS------------W-CEEMINNRNKSVVVSMSWNLDGTKICIV  133 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeeccc------------H-HHHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence            44899999999999999999999999999999998764            1 1111222 34678999999999999888


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      =.||.|.+=.+..+
T Consensus       134 YeDGavIVGsvdGN  147 (1189)
T KOG2041|consen  134 YEDGAVIVGSVDGN  147 (1189)
T ss_pred             EccCCEEEEeeccc
Confidence            88988877555433

>KOG3617|consensus

Probab=97.14  E-value=0.00053  Score=49.93  Aligned_cols=70  Identities=21%  Similarity=0.428  Sum_probs=56.9

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      +++++|+|..-.|+.|-..|.+-+|......              .-.....|...+..+.||++|..+.+++.-|.+.+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~l  127 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--------------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHL  127 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCce--------------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEE
Confidence            4568888887778888888888888777654              23344568889999999999999999999999999


Q ss_pred             EeCC
Q psy11100         97 WMLY  100 (110)
Q Consensus        97 w~~~  100 (110)
                      |...
T Consensus       128 wr~d  131 (1416)
T KOG3617|consen  128 WRYD  131 (1416)
T ss_pred             EEee
Confidence            9765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.12  E-value=0.02  Score=38.20  Aligned_cols=78  Identities=14%  Similarity=0.131  Sum_probs=55.4

Q ss_pred             ceEEEEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-e
Q psy11100         16 KVNCLAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-K   84 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~   84 (110)
                      ...-++++|++..+.....          .+.|.++|..+..              .+..+.- ...+..++++|++. .
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--------------vi~~i~v-G~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--------------RLRKIEL-GHEIDSINVSQDAKPL  313 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--------------EEEEEeC-CCceeeEEECCCCCeE
Confidence            3344889999887666421          1468888887765              4444442 35788999999999 7


Q ss_pred             EEEec-CCCcEEEEeCCCCCChhhh
Q psy11100         85 LTSSD-ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        85 l~s~~-~~~~i~~w~~~~~~~~~~~  108 (110)
                      +...+ .++.|.+.|..+++.+..+
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEeee
Confidence            66555 6788999999998876654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.12  E-value=0.011  Score=44.68  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ...++++++|...++-..++.|++||........... .......--......-.....++++++|+.+++-..++.|++
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            3568889999887777888899999987654100000 000000000001112235678999999998888888999999


Q ss_pred             EeCCCCCC
Q psy11100         97 WMLYKCND  104 (110)
Q Consensus        97 w~~~~~~~  104 (110)
                      ||+.++..
T Consensus       885 id~~~~~~  892 (1057)
T PLN02919        885 LDLNKGEA  892 (1057)
T ss_pred             EECCCCcc
Confidence            99988764

>KOG1517|consensus

Probab=97.11  E-value=0.0071  Score=45.26  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             CCCCc--eEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc---CCCeEEEEEcCCCCeE
Q psy11100         12 PNNTK--VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQYEKL   85 (110)
Q Consensus        12 ~h~~~--v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l   85 (110)
                      .|+..  |..+.+.+.|- .|++|+.+|.|++||++....+            ...++..|   .+..+++..++....+
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------------~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------------TFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------------ccceeeeccccCccceeeeeccCCCee
Confidence            57766  88999988664 4999999999999999874210            11222222   3358899999999999


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                      ++|+. +.|.+|++...+
T Consensus      1320 AsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             eecCc-ceEEEEecChhh
Confidence            99988 999999986543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.09  E-value=0.011  Score=37.95  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100         20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~   99 (110)
                      ++.+.+|+.||.- .|..+.+...+..-.      ....   ..+..+...-+-..++||||+..++.+...|+|+++|+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~------si~~---kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl   72 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS------SIIG---KCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDL   72 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCch------heeE---EEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEec
Confidence            4567788877664 355666655543320      0000   01112222345678999999999999999999999998


Q ss_pred             CC
Q psy11100        100 YK  101 (110)
Q Consensus       100 ~~  101 (110)
                      -.
T Consensus        73 ~g   74 (282)
T PF15492_consen   73 MG   74 (282)
T ss_pred             cc
Confidence            64

>KOG1354|consensus

Probab=97.07  E-value=0.0041  Score=41.10  Aligned_cols=77  Identities=9%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCe---EEEE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKV---RAII   77 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~   77 (110)
                      ..+.|..+.|++.|+++++.+. .+|++||+.-...             +..+...|            .+.|   ..++
T Consensus       271 iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-------------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  271 IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-------------PVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC-------------cceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence            3467889999999999988653 5899999964331             11222222            2222   4578


Q ss_pred             EcCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                      ||-++..+.+|+....+++++...|.
T Consensus       337 ~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  337 WSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EcCCcceEecccccceEEEecCCCCc
Confidence            99999999999999999999966554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.04  E-value=0.042  Score=36.41  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             ceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCc
Q psy11100         16 KVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~   93 (110)
                      ....++++|||++|..+.. .+.|.+|++....   +.       +...............++++|+|++++.++ .++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~---g~-------l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPAT---GT-------LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT---TT-------EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCC---Cc-------eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence            5788999999998877654 5679999995432   01       112333333345578999999999976665 5678


Q ss_pred             EEEEeC--CCCC
Q psy11100         94 IIVWML--YKCN  103 (110)
Q Consensus        94 i~~w~~--~~~~  103 (110)
                      |.+|++  .+|.
T Consensus       316 v~vf~~d~~tG~  327 (345)
T PF10282_consen  316 VSVFDIDPDTGK  327 (345)
T ss_dssp             EEEEEEETTTTE
T ss_pred             EEEEEEeCCCCc
Confidence            988865  4554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275|consensus

Probab=97.04  E-value=0.0029  Score=46.39  Aligned_cols=68  Identities=15%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec---------CCCc
Q psy11100         23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD---------ETGL   93 (110)
Q Consensus        23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---------~~~~   93 (110)
                      ..+++.+.+|...|+|.+.|..+..              .+.++..|++.++.+..  .|+.|++++         .|..
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~--------------~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~F  247 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFE--------------TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPF  247 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCc--------------eeeeeeccccceeeeec--cCCeEEEeecccccccccccch
Confidence            3467889999999999999999876              78999999999977755  889999987         3556


Q ss_pred             EEEEeCCCCCChh
Q psy11100         94 IIVWMLYKCNDDD  106 (110)
Q Consensus        94 i~~w~~~~~~~~~  106 (110)
                      |.|||++.-+.+.
T Consensus       248 vkVYDLRmmral~  260 (1118)
T KOG1275|consen  248 VKVYDLRMMRALS  260 (1118)
T ss_pred             hhhhhhhhhhccC
Confidence            8899988765543

>KOG4714|consensus

Probab=96.99  E-value=0.0024  Score=40.65  Aligned_cols=88  Identities=11%  Similarity=0.067  Sum_probs=54.4

Q ss_pred             ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcc----------cccccceeeeEEeeccCCCeEEEE
Q psy11100          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQV----------AAANVNLAMNQSLQGHSGKVRAII   77 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~   77 (110)
                      ++..|+.++..+.|+|. +..|.+++.||++..||.....-..+..          ++....+..-..+......|+++.
T Consensus       218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD  297 (319)
T KOG4714|consen  218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD  297 (319)
T ss_pred             HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeee
Confidence            34479999999999994 7789999999999999987421000000          011111111112222333444443


Q ss_pred             EcCCCCeEEEecCCCcEEEEe
Q psy11100         78 WNEQYEKLTSSDETGLIIVWM   98 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~   98 (110)
                      .  .|.-+++++.-+.|++++
T Consensus       298 V--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  298 V--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             c--cCceEEeccccceEEEec
Confidence            3  677888998888888764

>KOG3621|consensus

Probab=96.94  E-value=0.0039  Score=44.38  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      +.+..+..+++..++|.|+..|.|.++-+....        ++.+......-+.|...|.+++|++++..+.+|++.|.|
T Consensus        77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~--------p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv  148 (726)
T KOG3621|consen   77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL--------PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV  148 (726)
T ss_pred             ceEEEEEecchhHhhhhhcCCceEEeehhhccC--------CCcceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence            455567778888888999999999988776532        111111111123367899999999999999999999998


Q ss_pred             EEEeCCC
Q psy11100         95 IVWMLYK  101 (110)
Q Consensus        95 ~~w~~~~  101 (110)
                      -...+.+
T Consensus       149 ~~~~L~s  155 (726)
T KOG3621|consen  149 VLTELDS  155 (726)
T ss_pred             EEEEech
Confidence            8876665

>KOG2695|consensus

Probab=96.90  E-value=0.0013  Score=43.32  Aligned_cols=81  Identities=23%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~~   92 (110)
                      .+.|.++.|.-.++++..|+..|.|...|++...    +     .+..+.+. -.|...|.+++.=. +++.|...+-+|
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn----q-----G~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g  321 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN----Q-----GNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTG  321 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecc----c-----CCCcceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence            3567778888888999999999999999998653    0     11112233 34677777776544 678888999999


Q ss_pred             cEEEEeCCCCCC
Q psy11100         93 LIIVWMLYKCND  104 (110)
Q Consensus        93 ~i~~w~~~~~~~  104 (110)
                      .|.+||.+-.+.
T Consensus       322 kikLyD~R~~K~  333 (425)
T KOG2695|consen  322 KIKLYDLRATKC  333 (425)
T ss_pred             ceeEeeehhhhc
Confidence            999999886554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.86  E-value=0.069  Score=36.53  Aligned_cols=73  Identities=14%  Similarity=0.047  Sum_probs=47.1

Q ss_pred             ceEEEEEecCCCE-EEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-Eec-
Q psy11100         16 KVNCLAWHQNQGW-IAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SSD-   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~-l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~-   89 (110)
                      ......|+|||+. ++..+..   ..+.++|+..+.               ...+....+......|+|||..++ +.+ 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------------~~~lt~~~g~~~~~~~SPDG~~la~~~~~  253 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------------KEKIASSQGMLVVSDVSKDGSKLLLTMAP  253 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------------EEEEecCCCcEEeeEECCCCCEEEEEEcc
Confidence            5678999999984 5543333   457788887664               122333344556788999998754 333 


Q ss_pred             -CCCcEEEEeCCCCC
Q psy11100         90 -ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 -~~~~i~~w~~~~~~  103 (110)
                       .+..|.++|+.++.
T Consensus       254 ~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        254 KGQPDIYLYDTNTKT  268 (419)
T ss_pred             CCCcEEEEEECCCCc
Confidence             34568788877664

>KOG0280|consensus

Probab=96.85  E-value=0.012  Score=38.21  Aligned_cols=72  Identities=13%  Similarity=0.104  Sum_probs=53.4

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLII   95 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~   95 (110)
                      ..++.|++.+..++++..+|.+.+-+.....            ++..+..+.|.-+.....|+.... .+.+|+.|+.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~  191 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS  191 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee------------eeecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence            4567778878888888888887754444433            123346788888888888877555 588999999999


Q ss_pred             EEeCC
Q psy11100         96 VWMLY  100 (110)
Q Consensus        96 ~w~~~  100 (110)
                      .||++
T Consensus       192 ~~D~R  196 (339)
T KOG0280|consen  192 CWDIR  196 (339)
T ss_pred             EEEec
Confidence            99998

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.84  E-value=0.021  Score=42.77  Aligned_cols=71  Identities=13%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEE----EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVL----KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..+.|..+.+-++...++.+..+|.+-+.    +.....               ......-...|.+++||||++.++-+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---------------~E~VG~vd~GI~a~~WSPD~Ella~v  138 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---------------IEIVGSVDSGILAASWSPDEELLALV  138 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---------------eEEEEEEcCcEEEEEECCCcCEEEEE
Confidence            34678889999988878888888888887    333222               22233346789999999999999999


Q ss_pred             cCCCcEEEEe
Q psy11100         89 DETGLIIVWM   98 (110)
Q Consensus        89 ~~~~~i~~w~   98 (110)
                      +.++++.+.+
T Consensus       139 T~~~~l~~mt  148 (928)
T PF04762_consen  139 TGEGNLLLMT  148 (928)
T ss_pred             eCCCEEEEEe
Confidence            8888887764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.80  E-value=0.021  Score=38.18  Aligned_cols=73  Identities=8%  Similarity=-0.101  Sum_probs=52.7

Q ss_pred             EecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------CCCeEEEEEcCCCCe
Q psy11100         22 WHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------SGKVRAIIWNEQYEK   84 (110)
Q Consensus        22 ~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~   84 (110)
                      ++|||+.+..+..          +..|.+||..+..              ....+..-       ......++++|+|++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--------------PIADIELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--------------EEeEEccCCCchhhccCccceEEECCCCCE
Confidence            8999987765554          6789999999876              33333321       122347899999998


Q ss_pred             EEEec-C-CCcEEEEeCCCCCChhhh
Q psy11100         85 LTSSD-E-TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        85 l~s~~-~-~~~i~~w~~~~~~~~~~~  108 (110)
                      +.... . +..+.+.|+.+++.+.|+
T Consensus       119 l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658       119 LLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             EEEecCCCCCEEEEEECCCCcEEEEE
Confidence            76555 3 789999999999887664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832|consensus

Probab=96.70  E-value=0.0035  Score=46.23  Aligned_cols=75  Identities=20%  Similarity=0.370  Sum_probs=58.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|++..+|++|+-+.+.|+.|...|.++++++.++.              .......|...|..+.=+.+|...++.+..
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------------~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------------MEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------------ccccccccccccccccccCCcceeeeeccc
Confidence            577889999999999999999999999999999886              445567788888888888888874444322


Q ss_pred             --CcEEEEeCC
Q psy11100         92 --GLIIVWMLY  100 (110)
Q Consensus        92 --~~i~~w~~~  100 (110)
                        ....+|+..
T Consensus      1165 S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1165 SSPLSALWDAS 1175 (1516)
T ss_pred             cCchHHHhccc
Confidence              235577664

>KOG1409|consensus

Probab=96.69  E-value=0.057  Score=35.88  Aligned_cols=94  Identities=17%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC------------------------cCCc---cccccccee
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE------------------------STGQ---VAAANVNLA   61 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~------------------------~~~~---~~~~~~~~~   61 (110)
                      .+..|.+.+..+-|+...+++++.+.|..+.-.-.+.+..                        ...+   .+..+..+.
T Consensus       109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~  188 (404)
T KOG1409|consen  109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ  188 (404)
T ss_pred             hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCc
Confidence            3446888898888888777777776665432111100000                        0000   112234455


Q ss_pred             eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                      ++.++.+|.+.+.+..|.+....+.++..|..+.+||+--+
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence            68889999999999999999999999999999999998643

>KOG4640|consensus

Probab=96.66  E-value=0.0084  Score=42.32  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             CCCceE-EEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100         13 NNTKVN-CLAWHQNQGWIAVGGDDGLLKVLKLDTGK   47 (110)
Q Consensus        13 h~~~v~-~~~~~p~~~~l~~~~~~~~v~~~~~~~~~   47 (110)
                      +...++ +++|.|||+.++.|-.||++++.|+..+.
T Consensus        60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            334454 99999999999999999999999999875

>KOG1354|consensus

Probab=96.62  E-value=0.02  Score=38.00  Aligned_cols=79  Identities=15%  Similarity=0.331  Sum_probs=55.2

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCeEEEEEcCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKVRAIIWNEQ   81 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~s~~   81 (110)
                      ..-+.++.|.-.|++|++|..+|.|.++.-....+  +.       +.....++.|            ...|+.++|-++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~e-------y~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GE-------YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc--cc-------eeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            35688899999999999999999998875443321  00       0011222222            245788999887


Q ss_pred             CCe--EEEecCCCcEEEEeCCC
Q psy11100         82 YEK--LTSSDETGLIIVWMLYK  101 (110)
Q Consensus        82 ~~~--l~s~~~~~~i~~w~~~~  101 (110)
                      +..  ++..+.|.+|++|.+..
T Consensus        96 ~n~a~FLlstNdktiKlWKi~e  117 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRE  117 (433)
T ss_pred             CCccEEEEecCCcceeeeeeec
Confidence            664  77888899999998764

>KOG3914|consensus

Probab=96.62  E-value=0.018  Score=38.54  Aligned_cols=41  Identities=12%  Similarity=0.013  Sum_probs=34.2

Q ss_pred             EeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        65 ~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ..-+|-..+..++|+||++++++++.|..|++-.+.....+
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I  186 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI  186 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence            34567788999999999999999999999999877655443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.60  E-value=0.067  Score=36.60  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=45.1

Q ss_pred             CCceEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-
Q psy11100         14 NTKVNCLAWHQNQGWIAVG-GDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-   89 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-   89 (110)
                      .+......|+|||+.++.. +.++  .+.++++..+.               ...+..+........|+|||+.++-.+ 
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---------------LTQITNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---------------EEEcccCCCccCccEECCCCCEEEEEEC
Confidence            3445667899999876543 3343  46666766553               122222222233568999999855444 


Q ss_pred             CCC--cEEEEeCCCCCC
Q psy11100         90 ETG--LIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~--~i~~w~~~~~~~  104 (110)
                      ..+  .|.++|+.++..
T Consensus       297 r~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        297 RLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             CCCCceEEEEECCCCCe
Confidence            233  577778876654

>KOG1912|consensus

Probab=96.54  E-value=0.013  Score=42.59  Aligned_cols=81  Identities=21%  Similarity=0.310  Sum_probs=60.0

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-----------
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-----------   81 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------   81 (110)
                      |.....++.|+|.| +++.|+ ...|.+-|.....              .++.+..|...|..+.|.|.           
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q--------------~iqsie~h~s~V~~VrWap~~~p~~llS~~~   77 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQ--------------LIQSIELHQSAVTSVRWAPAPSPRDLLSPSS   77 (1062)
T ss_pred             CcccccccccCccc-eEEEec-CceEEEEehhhhh--------------hhhccccCccceeEEEeccCCCchhccCccc
Confidence            33446677888877 455655 4567777877765              67888889999999999872           


Q ss_pred             CC-eEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         82 YE-KLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        82 ~~-~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      .. .+++++..|.|.+||+..+..+.++.
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~  106 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASVINWLS  106 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhhhhhhc
Confidence            22 37788899999999999887766553

>KOG0309|consensus

Probab=96.45  E-value=0.0026  Score=45.81  Aligned_cols=75  Identities=23%  Similarity=0.371  Sum_probs=56.9

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEecCCCc
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~~~~   93 (110)
                      .....++|+-....+.+.+..+.+++||...+.             .++..+++|...|+.++|+.- ...+.+++.|++
T Consensus       159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             ccCceeeecccCcchhhhccCCceEEEeccCCC-------------cceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            455668887754444455667789999999875             256778889999999999874 334778889999


Q ss_pred             EEEEeCCCC
Q psy11100         94 IIVWMLYKC  102 (110)
Q Consensus        94 i~~w~~~~~  102 (110)
                      |.+||..+.
T Consensus       226 vkfw~y~kS  234 (1081)
T KOG0309|consen  226 VKFWDYSKS  234 (1081)
T ss_pred             eeeeccccc
Confidence            999998754

>KOG2066|consensus

Probab=96.38  E-value=0.035  Score=40.38  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCCCceEEEEEecC-------------CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE
Q psy11100         12 PNNTKVNCLAWHQN-------------QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW   78 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-------------~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (110)
                      +|.+.|....+.-.             |+++++++.||++.+..+.+..              ..+++ .-...+.++++
T Consensus        56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~--------------~~~~~-df~rpiksial  120 (846)
T KOG2066|consen   56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDD--------------EITQY-DFKRPIKSIAL  120 (846)
T ss_pred             cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCc--------------cceeE-ecCCcceeEEe
Confidence            57777666655444             9999999999999998887765              22222 23466778888


Q ss_pred             cCC-----CCeEEEecCCCcEEEE
Q psy11100         79 NEQ-----YEKLTSSDETGLIIVW   97 (110)
Q Consensus        79 s~~-----~~~l~s~~~~~~i~~w   97 (110)
                      +|+     ...+++|+..| +.++
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEe
Confidence            886     44577887776 5544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.30  E-value=0.03  Score=41.08  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ...+|++-..+|. +|.|+.+|.||+||-...+              +-..+.+-..+|.++..+.||.+++..+ +..|
T Consensus       578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~--------------AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyL  641 (794)
T PF08553_consen  578 NNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKR--------------AKTALPGLGDPIIGIDVTADGKWILATC-KTYL  641 (794)
T ss_pred             CCceEEEecCCce-EEEEeCCCcEEeecccchh--------------hhhcCCCCCCCeeEEEecCCCcEEEEee-cceE
Confidence            4566666555664 8889999999999854332              3355666678999999999999976665 3455


Q ss_pred             EEEeC
Q psy11100         95 IVWML   99 (110)
Q Consensus        95 ~~w~~   99 (110)
                      .+++.
T Consensus       642 lLi~t  646 (794)
T PF08553_consen  642 LLIDT  646 (794)
T ss_pred             EEEEE
Confidence            55553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.14  E-value=0.041  Score=25.27  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCC---eEEEecCCCcEEEEeCCCC
Q psy11100         71 GKVRAIIWNEQYE---KLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        71 ~~v~~~~~s~~~~---~l~s~~~~~~i~~w~~~~~  102 (110)
                      +.+.++.|||...   +++-+...+.+-++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4678999998544   7888888999999999964

It contains a characteristic DLL sequence motif.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.13  E-value=0.11  Score=35.57  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC-eEEEEEcCC------------
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK-VRAIIWNEQ------------   81 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~------------   81 (110)
                      -.+.++..+|++++.++...-|.|.++|+....              .++.++++.+. +.-+.....            
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~--------------vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGI--------------VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh--------------hhhhhccCccceEEEEEeecccccccccccccC
Confidence            457889999999999988888999999998875              44555554332 111111111            


Q ss_pred             -----CC-eEEEecCCCcEEEEeCCCCCChh
Q psy11100         82 -----YE-KLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        82 -----~~-~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                           .. +++-+-..|.|.+|.+++|+.+-
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~  404 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVA  404 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCEEE
Confidence                 11 25566778999999999998754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.98  E-value=0.12  Score=28.86  Aligned_cols=64  Identities=20%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             eEEEEEec---CC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         17 VNCLAWHQ---NQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        17 v~~~~~~p---~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      |+++++..   +| ..|+.|+.|..+++|+-...                +..+... +.|..+.-... ..|+.+-.+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------------~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------------VAEITET-DKVTSLCSLGG-GRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------------EEEEecc-cceEEEEEcCC-CEEEEEecCC
Confidence            55666654   43 46999999999999977643                3444433 44444443333 4477777777


Q ss_pred             cEEEEe
Q psy11100         93 LIIVWM   98 (110)
Q Consensus        93 ~i~~w~   98 (110)
                      +|-+|+
T Consensus        64 TVGvY~   69 (111)
T PF14783_consen   64 TVGVYD   69 (111)
T ss_pred             EEEEEe
Confidence            765554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.97  E-value=0.12  Score=34.28  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             eEEEEEecCCCEEEEEecCC-cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE-ecCCCcE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDG-LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS-SDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~~~~i   94 (110)
                      +....+.|+++++++.+..- .+.+|++..+.    ..+...      ..+ .....-+.+.|+|++++... .-.+++|
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~----L~~~~~------~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV  215 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK----LTPADP------AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTV  215 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCc----cccccc------ccc-CCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence            78888999999887765422 58888888553    110000      011 23455678999999999544 4579999


Q ss_pred             EEEeCCCC
Q psy11100         95 IVWMLYKC  102 (110)
Q Consensus        95 ~~w~~~~~  102 (110)
                      .+|.....
T Consensus       216 ~v~~y~~~  223 (346)
T COG2706         216 DVLEYNPA  223 (346)
T ss_pred             EEEEEcCC
Confidence            99988763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.88  E-value=0.19  Score=38.45  Aligned_cols=87  Identities=6%  Similarity=-0.084  Sum_probs=51.1

Q ss_pred             eEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--------cCCCeEEEEEcCCCCeEEE
Q psy11100         17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--------HSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        17 v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s   87 (110)
                      ...++++|++..+ ++-..++.|++||...+....... ..+..-.....+..        .-.....++++++|..+++
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            4568999998744 455556899999987643100000 00000000001100        0112357899999998888


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      -..++.|++||..++..
T Consensus       821 Ds~N~rIrviD~~tg~v  837 (1057)
T PLN02919        821 DSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             ECCCCEEEEEECCCCeE
Confidence            88899999999876543

>KOG2079|consensus

Probab=95.60  E-value=0.022  Score=42.67  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      +.+++.|+..|.+-..|....-             .....-..-.++|.+++|+.+|..++.|-.+|.|.+||...++.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL-------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNL-------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhccc-------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            4456667666766665555422             011111223578999999999999999999999999999987765


Q ss_pred             hh
Q psy11100        106 DE  107 (110)
Q Consensus       106 ~~  107 (110)
                      ..
T Consensus       166 ~~  167 (1206)
T KOG2079|consen  166 KV  167 (1206)
T ss_pred             ee
Confidence            54

>KOG1920|consensus

Probab=95.53  E-value=0.43  Score=36.69  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ...|..+.|..++.-++.+..+|.+.+-|..+..               ......-.+.|.+++||||++.++-.+...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aaswS~Dee~l~liT~~~t  132 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASWSPDEELLALITGRQT  132 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEeecCCCcEEEEEeCCcE
Confidence            3678888888888777777788888887666553               2223334678999999999999888888888


Q ss_pred             EEEEeC
Q psy11100         94 IIVWML   99 (110)
Q Consensus        94 i~~w~~   99 (110)
                      +.+.+.
T Consensus       133 ll~mT~  138 (1265)
T KOG1920|consen  133 LLFMTK  138 (1265)
T ss_pred             EEEEec
Confidence            877643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.45  E-value=0.03  Score=38.77  Aligned_cols=77  Identities=6%  Similarity=-0.031  Sum_probs=54.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC---
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET---   91 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~---   91 (110)
                      -++....+||.|.++++... ..|.+|......              .+..+  ....|..+.|||.+..|.+=...   
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~--------------~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~   95 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA--------------KLVRF--RHPDVKYLDFSPNEKYLVTWSREPII   95 (561)
T ss_pred             cchhheeecCcchheehhhc-cceEEccccchh--------------heeee--ecCCceecccCcccceeeeeccCCcc
Confidence            46777899999999887654 457788777654              22223  34667888899988887765432   


Q ss_pred             ------------CcEEEEeCCCCCChhhh
Q psy11100         92 ------------GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ------------~~i~~w~~~~~~~~~~~  108 (110)
                                  ..+.+||..+|..+..+
T Consensus        96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf  124 (561)
T COG5354          96 EPEIEISPFTSKNNVFVWDIASGMIVFSF  124 (561)
T ss_pred             ChhhccCCccccCceeEEeccCceeEeec
Confidence                        34899999998876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.42  E-value=0.11  Score=39.05  Aligned_cols=74  Identities=18%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             eEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         17 VNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      -.+++|.|.|+++|+...   ...|.+|.-+..+             .-.+.+.  .....|..++||+++..|+....+
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-------------hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~  325 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-------------HGEFTLRFDPEEEKVIELAWNSDSEILAVWLED  325 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-------------eeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence            446899999999888764   1234444433322             0113333  234578999999999998886644


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      . |++|...+-.|
T Consensus       326 ~-vqLWt~~NYHW  337 (928)
T PF04762_consen  326 R-VQLWTRSNYHW  337 (928)
T ss_pred             C-ceEEEeeCCEE
Confidence            4 99997766554

>KOG2314|consensus

Probab=95.38  E-value=0.11  Score=36.69  Aligned_cols=74  Identities=11%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             ceEEEEEecCCCEEEEEe---cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec---
Q psy11100         16 KVNCLAWHQNQGWIAVGG---DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD---   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---   89 (110)
                      ..+.+.|+|.|++++.+.   ..|.+.++|..-..              +..+-....-..+.+.|.|.|+.+.+++   
T Consensus       494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~--------------~k~~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD--------------LKDTASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ccceEEEcCCCcEEEEEEecccccceEEEecchhh--------------hhhccCccccccccceECCCCCEEEEeeehh
Confidence            456789999999976654   46788898887533              1111111223456789999999988776   


Q ss_pred             ---CCCcEEEEeCCCCC
Q psy11100         90 ---ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ---~~~~i~~w~~~~~~  103 (110)
                         .|.--++|++...-
T Consensus       560 rhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  560 RHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             hhccccceEEEEeecHH
Confidence               34446677766443

>KOG1912|consensus

Probab=95.19  E-value=0.13  Score=37.87  Aligned_cols=81  Identities=12%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             CCCCceEEEEEecC------C-----C-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100         12 PNNTKVNCLAWHQN------Q-----G-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN   79 (110)
Q Consensus        12 ~h~~~v~~~~~~p~------~-----~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s   79 (110)
                      .|...|+.+.|.|.      +     + .++++...|.+.+||.....              ...-+..+.+.+..++|=
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s--------------~~~~l~~~~~~~qdl~W~  118 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS--------------VINWLSHSNDSVQDLCWV  118 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh--------------hhhhhcCCCcchhheeee
Confidence            47789999999772      1     1 36788888999999998765              334566677788888885


Q ss_pred             C---CC-CeEEEecCCCcEEEEeCCCCCChh
Q psy11100         80 E---QY-EKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        80 ~---~~-~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +   +. ..++.-...+++-+||..+|..+.
T Consensus       119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen  119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             eccCcchheeEEecCCcEEEEEEccCCceee
Confidence            4   34 235555667889999988887543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.12  E-value=0.45  Score=29.83  Aligned_cols=85  Identities=14%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             CceEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         15 TKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .....++|+|+++.|. +-+..+.|..+++.....   ..    ........+....+..-.+++..+|.++++....+.
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~---~~----~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG---EL----SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC---CE----EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             ccccceEECCcchheeecccccceeEEEecccccc---ce----eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            4466799999998765 445567788888764330   00    000011112222234667999999998888778889


Q ss_pred             EEEEeCCCCCChhh
Q psy11100         94 IIVWMLYKCNDDDE  107 (110)
Q Consensus        94 i~~w~~~~~~~~~~  107 (110)
                      |.+++.. |+.+.+
T Consensus       207 I~~~~p~-G~~~~~  219 (246)
T PF08450_consen  207 IVVFDPD-GKLLRE  219 (246)
T ss_dssp             EEEEETT-SCEEEE
T ss_pred             EEEECCC-ccEEEE
Confidence            9999987 665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.08  E-value=0.13  Score=23.58  Aligned_cols=32  Identities=13%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             CceEEEEEecC-C--CEEEEEecCCcEEEEEcCCC
Q psy11100         15 TKVNCLAWHQN-Q--GWIAVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        15 ~~v~~~~~~p~-~--~~l~~~~~~~~v~~~~~~~~   46 (110)
                      +.+.+++|+|+ +  .+|+.+-..+.+.++|+...
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46889999985 4  58888888899999999853

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.91  E-value=0.52  Score=29.48  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=47.4

Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100         22 WHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        22 ~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~   99 (110)
                      +..++.++.+-..+|.+++||+...+-.-+.  ....++......  ......|..+.++.+|..+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4557888988899999999999976511000  000000000000  03446678888888888877665 466777776


Q ss_pred             CCCCC
Q psy11100        100 YKCND  104 (110)
Q Consensus       100 ~~~~~  104 (110)
                      .=+.|
T Consensus        95 ~L~~W   99 (219)
T PF07569_consen   95 DLGCW   99 (219)
T ss_pred             cccee
Confidence            54433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.84  E-value=0.15  Score=33.67  Aligned_cols=81  Identities=19%  Similarity=0.398  Sum_probs=54.5

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCeEEEEEcC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKVRAIIWNE   80 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~s~   80 (110)
                      ....|+++.|.-.|.++++|...|.|.++.-....   +..      +.....+++|            ...|..+.|-.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ce------ykf~teFQshe~EFDYLkSleieEKin~I~w~~   95 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCE------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD   95 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccc---ccc------hhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence            34578899999999999999999999888654432   000      0011222232            23467788876


Q ss_pred             CCCe--EEEecCCCcEEEEeCCCC
Q psy11100         81 QYEK--LTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        81 ~~~~--l~s~~~~~~i~~w~~~~~  102 (110)
                      ++..  ++-.+.|.+|++|.+...
T Consensus        96 ~t~r~hFLlstNdktiKlWKiyek  119 (460)
T COG5170          96 DTGRNHFLLSTNDKTIKLWKIYEK  119 (460)
T ss_pred             CCCcceEEEecCCceeeeeeeecc
Confidence            6443  777788999999988754

>KOG4190|consensus

Probab=94.60  E-value=0.11  Score=36.82  Aligned_cols=98  Identities=16%  Similarity=0.194  Sum_probs=61.3

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc--------CCc------cccccc-----------------
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES--------TGQ------VAAANV-----------------   58 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~--------~~~------~~~~~~-----------------   58 (110)
                      +..|+.+|.++.|-.+.+.+++  .|+.+.+||...++--        .+.      ......                 
T Consensus       780 Y~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  780 YQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             hhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence            3468888888888777766654  5788999996543210        000      000000                 


Q ss_pred             --ceeeeEEe-----eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         59 --NLAMNQSL-----QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        59 --~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                        .......+     .+....+.+++..+.|++++.+-.+|.|-+.|.++|+.+-.||
T Consensus       858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence              00001111     1123457788999999999999999999999999998766543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.44  E-value=0.86  Score=30.89  Aligned_cols=73  Identities=16%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             ceEEEEEecCCCEEEEE-ecCC----cEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         16 KVNCLAWHQNQGWIAVG-GDDG----LLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~-~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+....++|+|++++.+ +..|    .++++|+.++.              .+. .+..  .....+.|.+++..|....
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--------------~l~d~i~~--~~~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--------------FLPDGIEN--PKFSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--------------EEEEEEEE--EESEEEEECTTSSEEEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--------------CcCCcccc--cccceEEEeCCCCEEEEEE
Confidence            34467889999987765 4444    48999998875              111 1121  1112399999988865554


Q ss_pred             CC-----------CcEEEEeCCCCCC
Q psy11100         90 ET-----------GLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~-----------~~i~~w~~~~~~~  104 (110)
                      .+           ..|..|++.++..
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~~~  214 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTPQS  214 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred             eCcccccccCCCCcEEEEEECCCChH
Confidence            22           2366777665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.37  E-value=1.5  Score=32.40  Aligned_cols=88  Identities=13%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE------Ee-eccCCCeEEEEEcCC---CCe
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ------SL-QGHSGKVRAIIWNEQ---YEK   84 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~v~~~~~s~~---~~~   84 (110)
                      -.|..+.++|+|..++..+..| |.|..+.......+........+.+..      .+ ......|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3678899999999888777654 444455431100010100011111100      11 123457889999996   467


Q ss_pred             EEEecCCCcEEEEeCCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~  103 (110)
                      |+--..|+.+++||+.+.+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.27  E-value=0.072  Score=35.14  Aligned_cols=85  Identities=8%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             ceEEEEEecC-CCEEEEEecCCcEEEEEcCCCC--CcCCcccc-cccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGK--ESTGQVAA-ANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        16 ~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      -|++..|+|. ...+...+..|.+++.|++...  +-...+.. ...+. -..-+.+-...|+.+.|++.|+.+++.+ -
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v-~~~ff~eivsSISD~kFs~ngryIlsRd-y  300 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGV-DVDFFEEIVSSISDFKFSDNGRYILSRD-Y  300 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcc-cchhHHHHhhhhcceEEcCCCcEEEEec-c
Confidence            4566778886 4456777778999999887321  00011100 00000 0011222346688999999999988876 4


Q ss_pred             CcEEEEeCCCC
Q psy11100         92 GLIIVWMLYKC  102 (110)
Q Consensus        92 ~~i~~w~~~~~  102 (110)
                      -++++||++..
T Consensus       301 ltvkiwDvnm~  311 (460)
T COG5170         301 LTVKIWDVNMA  311 (460)
T ss_pred             ceEEEEecccc
Confidence            58999998643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.21  E-value=0.26  Score=32.80  Aligned_cols=64  Identities=11%  Similarity=0.183  Sum_probs=41.5

Q ss_pred             ecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         23 HQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        23 ~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      |||++.++....         .+.+.++|+.+..               ...+......+....|||+|..++... ++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---------------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n   64 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---------------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN   64 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---------------EEESS-EETTBSEEEE-SSSTEEEEEE-TTE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---------------eEECcCCccccccceeecCCCeeEEEe-cCc
Confidence            567776554321         2457788888764               222332256778899999999988776 568


Q ss_pred             EEEEeCCCC
Q psy11100         94 IIVWMLYKC  102 (110)
Q Consensus        94 i~~w~~~~~  102 (110)
                      |.+.+..++
T Consensus        65 ly~~~~~~~   73 (353)
T PF00930_consen   65 LYLRDLATG   73 (353)
T ss_dssp             EEEESSTTS
T ss_pred             eEEEECCCC
Confidence            888887665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0882|consensus

Probab=94.15  E-value=0.032  Score=38.30  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=58.0

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-C
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-T   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~   91 (110)
                      |...|+.+. .....++.+++.||.++.|.-....           .......+..|-..+.+++.+.++..+.|++. |
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~is-----------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D   75 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRIS-----------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD   75 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCcc-----------ceeehhhhHHHHHHHHhhhccccceeEeeccCcc
Confidence            556666543 3346788999999999999766522           11234455667788889999999999999777 9


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      ..++++|+.+-.
T Consensus        76 hs~KvfDvEn~D   87 (558)
T KOG0882|consen   76 HSVKVFDVENFD   87 (558)
T ss_pred             cceeEEEeeccc
Confidence            999999887543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.00  E-value=0.12  Score=36.45  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         69 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        69 ~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                      ....|.+.++||+...++.|+.||+|.+||...+
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~  291 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG  291 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCC
Confidence            3567889999999999999999999999998765

>KOG4649|consensus

Probab=93.51  E-value=0.64  Score=30.21  Aligned_cols=65  Identities=12%  Similarity=0.005  Sum_probs=43.7

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      |..++.|+..|.+++.+.+++.           +++......   ..-......+++..+.++++|+.++..|+++-..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs-----------~~w~f~~~~---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGS-----------QIWNFVILE---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchh-----------heeeeeehh---hhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence            5667788888888888888774           111111111   1112345577899999999999999999876544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.41  E-value=1.5  Score=29.14  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             eEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEee----------ccCCCeEEEEEcCCCCeE
Q psy11100         17 VNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ----------GHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l   85 (110)
                      ...++++|++++++.+.. ++.+.++++....    ....      ......          ........+.++|+++++
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g----~l~~------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG----SLGE------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTS----EEEE------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCc----ccce------eeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence            345788999998888764 7899999998642    1100      000110          112457889999999986


Q ss_pred             EEec-CCCcEEEEeCCCCC
Q psy11100         86 TSSD-ETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~-~~~~i~~w~~~~~~  103 (110)
                      +..+ ....|.++++....
T Consensus       159 ~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS
T ss_pred             EEEecCCCEEEEEEEeCCC
Confidence            6554 45578888886554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.30  E-value=1.4  Score=31.93  Aligned_cols=33  Identities=6%  Similarity=-0.016  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCe-EEEecCCCcEEEEeCCCCC
Q psy11100         71 GKVRAIIWNEQYEK-LTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        71 ~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~~  103 (110)
                      .....+.++|||++ ++++..++++.+.|+.+.+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            44567899999999 4455678999999998755

>KOG1916|consensus

Probab=93.28  E-value=0.07  Score=39.81  Aligned_cols=74  Identities=16%  Similarity=0.344  Sum_probs=48.3

Q ss_pred             CCCCceEEEEEec---CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe-----------EEEE
Q psy11100         12 PNNTKVNCLAWHQ---NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV-----------RAII   77 (110)
Q Consensus        12 ~h~~~v~~~~~~p---~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------~~~~   77 (110)
                      +....+.-+.|+|   +..++.++..++.+++.+.....               ...+.+|+..+           .--.
T Consensus       178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---------------~~l~rsHs~~~~d~a~~~~g~~~l~~  242 (1283)
T KOG1916|consen  178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---------------RSLFRSHSQRVTDMAFFAEGVLKLAS  242 (1283)
T ss_pred             cCCCCcceeeecccccccceeeeccCCCceeEeeechHH---------------HHHHHhcCCCcccHHHHhhchhhhee
Confidence            3344556667766   45667788888999988776543               01122232222           1234


Q ss_pred             EcCCCCeEEEecCCCcEEEEeCC
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~  100 (110)
                      .||||..|+.+..||.+.+|.+.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeee
Confidence            79999999999999998888753

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.16  E-value=0.86  Score=30.53  Aligned_cols=39  Identities=10%  Similarity=0.032  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCe-EEEe-cCCCcEEEEeCCCCCChhhhhC
Q psy11100         72 KVRAIIWNEQYEK-LTSS-DETGLIIVWMLYKCNDDDEWKR  110 (110)
Q Consensus        72 ~v~~~~~s~~~~~-l~s~-~~~~~i~~w~~~~~~~~~~~~~  110 (110)
                      .+.+++.+.+..- |... ..++.|.++|..+|+.++.+++
T Consensus       290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            4668888888764 4443 4578999999999998887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.11  E-value=0.65  Score=31.95  Aligned_cols=51  Identities=16%  Similarity=0.151  Sum_probs=40.8

Q ss_pred             ceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         59 NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        59 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      .+.+...+......+.++..+|.+.+.+..+.-|.|.++|+.++..++-||
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            333455555556678899999999998888888999999999998887665

>KOG2444|consensus

Probab=92.93  E-value=0.42  Score=30.12  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC-CCeEEEEEcCCCCeEEEe--cCCCcEEEEeCCC
Q psy11100         25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-GKVRAIIWNEQYEKLTSS--DETGLIIVWMLYK  101 (110)
Q Consensus        25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~~~~i~~w~~~~  101 (110)
                      ++.+..+++.++.++.|++...+              .+.....|. ..+.....+..++.+.++  +.+..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k--------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNK--------------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCc--------------eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            34577788889999999888765              333344444 334444445555555555  5666677776654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.85  E-value=1.2  Score=26.61  Aligned_cols=31  Identities=13%  Similarity=0.108  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCC------CeEEEecCCCcEEEEeCCCC
Q psy11100         72 KVRAIIWNEQY------EKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        72 ~v~~~~~s~~~------~~l~s~~~~~~i~~w~~~~~  102 (110)
                      .+..++|||.|      -.|+..+.++.|.+|....+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            78899999943      24778889999999987754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.53  E-value=2.3  Score=30.18  Aligned_cols=35  Identities=9%  Similarity=0.032  Sum_probs=25.8

Q ss_pred             CCeEEEEEcC----CCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100         71 GKVRAIIWNE----QYEKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        71 ~~v~~~~~s~----~~~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ..+...+++.    +..++++.+.|+.|++||+.++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            3455666666    6677889999999999999999873

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.46  E-value=0.61  Score=32.18  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             ceEEEEEecCCCEEEE-EecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC
Q psy11100         16 KVNCLAWHQNQGWIAV-GGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~   91 (110)
                      .....+|+|||++++. ...++.  +.+.|+....               ...+....+.-..-.|+|+|+.++-.+ ..
T Consensus       239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~  303 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRG  303 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---------------ceecccCCccccCccCCCCCCEEEEEeCCC
Confidence            3445789999987654 455665  4555555543               112222222223678999999966554 44


Q ss_pred             Cc--EEEEeCCCCC
Q psy11100         92 GL--IIVWMLYKCN  103 (110)
Q Consensus        92 ~~--i~~w~~~~~~  103 (110)
                      |.  |.+.+...+.
T Consensus       304 G~p~I~~~~~~g~~  317 (425)
T COG0823         304 GRPQIYLYDLEGSQ  317 (425)
T ss_pred             CCcceEEECCCCCc
Confidence            44  5555655443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.25  E-value=1.8  Score=27.09  Aligned_cols=72  Identities=17%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             CCceEEEEEecCCCEEEEEecC--------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDD--------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      ......+++.|+|++.++....        +.+..++.. ..               .......-...+.++|+|++..+
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------VTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------EEEEEEEESSEEEEEEETTSSEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------EEEEecCcccccceEECCcchhe
Confidence            3467778888888865554432        234444444 22               12222234557899999999875


Q ss_pred             E-EecCCCcEEEEeCCC
Q psy11100         86 T-SSDETGLIIVWMLYK  101 (110)
Q Consensus        86 ~-s~~~~~~i~~w~~~~  101 (110)
                      . +-+..+.|..+++..
T Consensus       149 yv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEETTTTEEEEEEEET
T ss_pred             eecccccceeEEEeccc
Confidence            4 556677888888763

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.22  E-value=1.1  Score=31.19  Aligned_cols=56  Identities=16%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~   99 (110)
                      |.+|+..+. +.+.+||.....              .+..+..  ..|..+.||+++++++-.+.+ .+.+.+.
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~--------------~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGK--------------LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT----------------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcc--------------eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            666655543 368888888766              4555543  238899999999998888744 5666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.83  E-value=1.1  Score=30.92  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             EEEEecCCCEEEEEe-cCCcEEEE--EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-CCc-
Q psy11100         19 CLAWHQNQGWIAVGG-DDGLLKVL--KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-TGL-   93 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~~~-   93 (110)
                      .-.|+|||+.++..+ ..|.-.+|  +.....              . ..+......-....|||+|..++..+. +|. 
T Consensus       286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--------------~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~  350 (425)
T COG0823         286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--------------V-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW  350 (425)
T ss_pred             CccCCCCCCEEEEEeCCCCCcceEEECCCCCc--------------e-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence            578899999876654 44544444  444432              1 222222222227889999999776663 233 


Q ss_pred             -EEEEeCCCCC
Q psy11100         94 -IIVWMLYKCN  103 (110)
Q Consensus        94 -i~~w~~~~~~  103 (110)
                       |.+.++.++.
T Consensus       351 ~i~~~~~~~~~  361 (425)
T COG0823         351 DIDKNDLASGG  361 (425)
T ss_pred             eeEEeccCCCC
Confidence             5555665544

>KOG2377|consensus

Probab=91.76  E-value=1.7  Score=30.62  Aligned_cols=62  Identities=11%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   83 (110)
                      ...|++.++.|++|.+.+|....++++.+++.....   ++       .+....++..+..|..+.|+..-+
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~---~~-------l~~~~~ck~k~~~IlGF~W~~s~e  125 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN---SQ-------LEYTQECKTKNANILGFCWTSSTE  125 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCc---hh-------hHHHHHhccCcceeEEEEEecCee
Confidence            356799999999999999999999999998875432   00       011222333344577778866533

>PRK02888 nitrous-oxide reductase; Validated

Probab=91.68  E-value=1.8  Score=31.50  Aligned_cols=81  Identities=6%  Similarity=0.033  Sum_probs=51.0

Q ss_pred             eEEEEEecCCCEEEEE-ecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         17 VNCLAWHQNQGWIAVG-GDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~-~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ...+.++|||+++..+ ..+..+.+.|+....+- ....+  .... ...... -...-...+|.++|....|.-.|+.|
T Consensus       323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~--~~~~-vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK--PRDA-VVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC--ccce-EEEeec-cCCCcceEEECCCCCEEEeEeeccee
Confidence            4457889999986554 55889999999875410 00000  0000 011111 12334578899998878888889999


Q ss_pred             EEEeCCC
Q psy11100         95 IVWMLYK  101 (110)
Q Consensus        95 ~~w~~~~  101 (110)
                      -.||+.+
T Consensus       399 ~kwn~~~  405 (635)
T PRK02888        399 VKWNIEA  405 (635)
T ss_pred             EEEehHH
Confidence            9999875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=91.63  E-value=1.7  Score=30.60  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=24.8

Q ss_pred             CCCceEEEEEecCCCEE--EEEecCCcEEEEEcCCC
Q psy11100         13 NNTKVNCLAWHQNQGWI--AVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l--~~~~~~~~v~~~~~~~~   46 (110)
                      -.++|...+|.|.++.+  ++|-..-.+.++|++..
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc
Confidence            36899999999987654  44456667777877754

>PRK13616 lipoprotein LpqB; Provisional

Probab=91.61  E-value=1.3  Score=32.00  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=37.7

Q ss_pred             eEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCccc--ccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVA--AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .....|+|+|..+.+...... +++.+.....    +.-  .....  ....  ...+.|..++|||||..++-.. ++.
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g----ql~~~~vd~g--e~~~--~~~g~Issl~wSpDG~RiA~i~-~g~  469 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATG----QLARTPVDAS--AVAS--RVPGPISELQLSRDGVRAAMII-GGK  469 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCc----eEEEEeccCc--hhhh--ccCCCcCeEEECCCCCEEEEEE-CCE
Confidence            677899999887777654322 2222211110    000  00000  0011  2245699999999999866544 456


Q ss_pred             EEE
Q psy11100         94 IIV   96 (110)
Q Consensus        94 i~~   96 (110)
                      |++
T Consensus       470 v~V  472 (591)
T PRK13616        470 VYL  472 (591)
T ss_pred             EEE
Confidence            665

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=91.41  E-value=3.3  Score=28.39  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC-c----CCc---------------------cc---ccccceeeeEEe
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-S----TGQ---------------------VA---AANVNLAMNQSL   66 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~-~----~~~---------------------~~---~~~~~~~~~~~~   66 (110)
                      .|+.+.|+++.--++.+...|.|-+|....... .    ...                     .+   .-.+++.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            578899999877788888899988876542210 0    000                     00   112355566666


Q ss_pred             eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ....+.|..++.|.- -+++.+-.+|.+.+.|++....
T Consensus        83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPav  119 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAV  119 (395)
T ss_dssp             ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEE
T ss_pred             eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeE
Confidence            667899999998744 4677777899999999975543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395|consensus

Probab=91.38  E-value=0.7  Score=32.77  Aligned_cols=66  Identities=14%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ..|.+-..+| +++.|+.+|.+++||--...              .-..+.+-..+|..+..+.+|.+++..+.. .|.+
T Consensus       433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~--------------AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlL  496 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRR--------------AKTALPGLGDAIKHVDVTADGKWILATCKT-YLLL  496 (644)
T ss_pred             cceeeecCCc-eEEEeecCCcEEeehhhhhh--------------hhhcccccCCceeeEEeeccCcEEEEeccc-EEEE
Confidence            3343333333 58889999999999874332              335566777899999999999997766644 4444


Q ss_pred             Ee
Q psy11100         97 WM   98 (110)
Q Consensus        97 w~   98 (110)
                      .+
T Consensus       497 i~  498 (644)
T KOG2395|consen  497 ID  498 (644)
T ss_pred             EE
Confidence            44

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.36  E-value=2.9  Score=27.61  Aligned_cols=70  Identities=9%  Similarity=0.100  Sum_probs=39.0

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .+.+..+.-+++|++++.+.....+.-|+.-...              ....-......+..+.|+|++.+...+ ..+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--------------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~  208 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--------------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ  208 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---------------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCcc--------------ceEEccCccceehhceecCCCCEEEEe-CCcE
Confidence            3567777788999988888765555566554332              112222345789999999998875544 6777


Q ss_pred             EEEEe
Q psy11100         94 IIVWM   98 (110)
Q Consensus        94 i~~w~   98 (110)
                      |++-+
T Consensus       209 ~~~s~  213 (302)
T PF14870_consen  209 IQFSD  213 (302)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            77665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.14  E-value=1.4  Score=29.40  Aligned_cols=27  Identities=11%  Similarity=-0.177  Sum_probs=21.1

Q ss_pred             CCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         81 QYEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      .+..++.++.+|.|.++|..+|+.+.+
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~  345 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDGSFVAR  345 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            355677788899999999988877544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.11  E-value=3.3  Score=27.81  Aligned_cols=76  Identities=12%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             CCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC-
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET-   91 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~-   91 (110)
                      .....+++.+|||++|.++.. ...+.+|.+....   +.       +........+...-+.+.+++.+.+|+.+..+ 
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---g~-------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---GK-------LELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---CE-------EEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            456778999999999887764 2367777777543   01       11222233344446789999999998777654 


Q ss_pred             CcEEEEeC
Q psy11100         92 GLIIVWML   99 (110)
Q Consensus        92 ~~i~~w~~   99 (110)
                      ..|.++..
T Consensus       313 d~i~vf~~  320 (346)
T COG2706         313 DNITVFER  320 (346)
T ss_pred             CcEEEEEE
Confidence            45777754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.11  E-value=0.72  Score=30.75  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~   46 (110)
                      ...+....|+|+|+.++... ++.|.+.+...+
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~   73 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG   73 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence            35688899999999988865 578988877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=90.45  E-value=2.7  Score=28.15  Aligned_cols=26  Identities=4%  Similarity=-0.174  Sum_probs=18.4

Q ss_pred             CCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         82 YEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        82 ~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      +..++.+..++.|..+|.++|+.+.+
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~  170 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWT  170 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeE
Confidence            34455566788899999988876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4460|consensus

Probab=90.16  E-value=4.7  Score=29.01  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCC-CC---CcCCccccc--ccceeeeEEeeccCCCeEEEEEcCCC---CeEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GK---ESTGQVAAA--NVNLAMNQSLQGHSGKVRAIIWNEQY---EKLT   86 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~-~~---~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~   86 (110)
                      .|..+..++.|..++-.+.+|-+.+.-.+. +.   ++++..-..  ..++....-.....-.+.-++|+|+.   .++.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            466677899999888888888655532111 11   011110000  00000000011122346678999975   5576


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      .-..|..+++||..+..
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            77779999999987654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.96  E-value=3.4  Score=29.90  Aligned_cols=31  Identities=16%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCeEEEe-cCCCcEEEEeCC
Q psy11100         70 SGKVRAIIWNEQYEKLTSS-DETGLIIVWMLY  100 (110)
Q Consensus        70 ~~~v~~~~~s~~~~~l~s~-~~~~~i~~w~~~  100 (110)
                      .+.|.|.+|.+||+.++-+ +..=.-++||-.
T Consensus       155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            5789999999999985544 444456788754

>KOG3621|consensus

Probab=89.78  E-value=1.6  Score=31.86  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +...|.-.+++-.+.+++.|+..|.|++++-..+.             .......+..+.+.....|++..+++.++..|
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-------------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g   98 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-------------MRKLKNEGATGITCVRSVSSVEYLVAAGTASG   98 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchh-------------hhcccccCccceEEEEEecchhHhhhhhcCCc
Confidence            44445545566678999999999999999877654             01111222345556677788888888888889


Q ss_pred             cEEEEeCCC
Q psy11100         93 LIIVWMLYK  101 (110)
Q Consensus        93 ~i~~w~~~~  101 (110)
                      .|-++.+.+
T Consensus        99 ~V~v~ql~~  107 (726)
T KOG3621|consen   99 RVSVFQLNK  107 (726)
T ss_pred             eEEeehhhc
Confidence            888887665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.77  E-value=6.3  Score=28.87  Aligned_cols=69  Identities=10%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE--cCCCCeEEEecCCCcE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW--NEQYEKLTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~~~~i   94 (110)
                      ...+.-+.-+...+.-+....+.|||.....            ++....+ ...+.|.++.|  .|+++.+++.+-...|
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v   98 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV------------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHV   98 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcE------------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence            3334444444443444445578999998764            1122222 34678899999  4689999999988888


Q ss_pred             EEEe
Q psy11100         95 IVWM   98 (110)
Q Consensus        95 ~~w~   98 (110)
                      .++.
T Consensus        99 ~l~~  102 (631)
T PF12234_consen   99 LLYT  102 (631)
T ss_pred             EEEE
Confidence            8874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1275|consensus

Probab=89.56  E-value=3.3  Score=31.52  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             EEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         18 NCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        18 ~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      .-+.|+|. ...++..+..|...+-|.....-       ++   .....+..-...+..+.+|+.+..++.+..+|.|.+
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-------P~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-------PP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCC-------Cc---cceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            44677886 34566777778777766332210       00   012223334556889999999999999999999999


Q ss_pred             EeCCCC
Q psy11100         97 WMLYKC  102 (110)
Q Consensus        97 w~~~~~  102 (110)
                      |.-...
T Consensus       339 wa~~~~  344 (1118)
T KOG1275|consen  339 WADRPQ  344 (1118)
T ss_pred             ecCCCC
Confidence            974433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.26  E-value=0.76  Score=28.75  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=23.9

Q ss_pred             EcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +...+.++...+.+|.+++||+.+++...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            34578888899999999999999887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.14  E-value=4.9  Score=26.68  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=27.6

Q ss_pred             CCceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGK   47 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~   47 (110)
                      .+++-++++++++..++..+ ..+.+.+||..++.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence            47899999999998765554 56789999999876

>KOG3617|consensus

Probab=88.96  E-value=0.93  Score=34.20  Aligned_cols=36  Identities=11%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~   44 (110)
                      ...+|..++.-+.||++|..+.++..-|.|.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            344799999999999999999999999999999876

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.72  E-value=1.2  Score=19.32  Aligned_cols=28  Identities=11%  Similarity=0.261  Sum_probs=17.8

Q ss_pred             CCCeEEEEEcCCCCeEEEec-CC--CcEEEE
Q psy11100         70 SGKVRAIIWNEQYEKLTSSD-ET--GLIIVW   97 (110)
Q Consensus        70 ~~~v~~~~~s~~~~~l~s~~-~~--~~i~~w   97 (110)
                      ...-....|||+|+.|+-++ .+  |...+|
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556889999999866444 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.49  E-value=5.5  Score=26.45  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCeE-EEecCCCcEEEEeCCCCCChhh
Q psy11100         70 SGKVRAIIWNEQYEKL-TSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        70 ~~~v~~~~~s~~~~~l-~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      .+.+-++++++++..+ +|+-..+.+.+||..+++.+..
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            4778899999999875 5666788999999999987654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.17  E-value=4.5  Score=26.85  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=37.9

Q ss_pred             EEecCCCEEEEEecC-----CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         21 AWHQNQGWIAVGGDD-----GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        21 ~~~p~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .|||||.+|...-.|     |.+=+||.....             +....+..|.-....+.|.+||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-------------qrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-------------QRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccccc-------------ceecccccCCcCcceeEEecCCcEEEEeC
Confidence            468888887654333     456778877543             23455566666667889999999877664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=86.74  E-value=3.9  Score=22.89  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE---cCCCCe-EEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW---NEQYEK-LTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~-l~s   87 (110)
                      ..++.|+.+.-... ..++.+..+|+|-+|+-....                =..+.. ..+.++++   +.+|.. |++
T Consensus        40 ~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl----------------WRiKSK-~~~~~~~~~D~~gdG~~eLI~  101 (111)
T PF14783_consen   40 TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL----------------WRIKSK-NQVTSMAFYDINGDGVPELIV  101 (111)
T ss_pred             ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----------------eeeccC-CCeEEEEEEcCCCCCceEEEE
Confidence            34567777765554 557888888988887654321                111221 22334433   345555 888


Q ss_pred             ecCCCcEE
Q psy11100         88 SDETGLII   95 (110)
Q Consensus        88 ~~~~~~i~   95 (110)
                      +..+|.|-
T Consensus       102 GwsnGkve  109 (111)
T PF14783_consen  102 GWSNGKVE  109 (111)
T ss_pred             EecCCeEE
Confidence            88888774

>KOG2066|consensus

Probab=86.53  E-value=3.3  Score=30.88  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=43.1

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ++|++++  +..++.|..+|.+++.+.....                .+...|+..      ..+|+.+++|+.||.+.+
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------------~~~~~~s~~------~~~Gey~asCS~DGkv~I   97 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------------KTNFDHSSS------ILEGEYVASCSDDGKVVI   97 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCCcc----------------ccccccccc------ccCCceEEEecCCCcEEE
Confidence            4444443  5678888888888888766442                112222221      557899999999999888


Q ss_pred             EeCCCCCChh
Q psy11100         97 WMLYKCNDDD  106 (110)
Q Consensus        97 w~~~~~~~~~  106 (110)
                      .-+-+++...
T Consensus        98 ~sl~~~~~~~  107 (846)
T KOG2066|consen   98 GSLFTDDEIT  107 (846)
T ss_pred             eeccCCccce
Confidence            7776665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.09  E-value=9  Score=26.41  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=26.5

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCC
Q psy11100         64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~  100 (110)
                      ..+.-..+.+.++.|+.+. .|+....+|.++++|+.
T Consensus        74 ~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   74 SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            3343334788999998854 45567789999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=85.91  E-value=9.2  Score=26.33  Aligned_cols=73  Identities=19%  Similarity=0.291  Sum_probs=45.7

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE--eec------cCCCeEEEEEcC----
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS--LQG------HSGKVRAIIWNE----   80 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~v~~~~~s~----   80 (110)
                      .+++|++++.| |=-+++.|..+|.+.+.|++...              .+..  +..      ....+.++.|+.    
T Consensus        85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa--------------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA--------------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE--------------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe--------------EEeeccccccccccccccCeeEEEEEEEecC
Confidence            47899999987 44478999999999999997654              2222  111      234566777752    


Q ss_pred             -CC---CeEEEecCCCcEEEEeCC
Q psy11100         81 -QY---EKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        81 -~~---~~l~s~~~~~~i~~w~~~  100 (110)
                       |+   -.+..+...|.+.+|.+-
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEe
Confidence             33   236677778888888653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920|consensus

Probab=85.87  E-value=5.3  Score=31.26  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEE-
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTS-   87 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s-   87 (110)
                      .+.-.+++|-|.|.++++...   +..|.++.-+....             -.+.+.  .....+..++|+.++..|+. 
T Consensus       241 ~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  241 EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-------------GEFVLPFPLDEKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-------------cccccCCcccccchheeeecCCCCceeee
Confidence            344567899999998887644   34566665443320             011111  12233789999999999877 


Q ss_pred             --ecCCCcEEEEeCCCCCCh
Q psy11100         88 --SDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        88 --~~~~~~i~~w~~~~~~~~  105 (110)
                        ......|++|...+-.|.
T Consensus       308 ~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  308 TSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ecccccceEEEEEecCeEEE
Confidence              334445999987765543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.47  E-value=8.5  Score=25.54  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=22.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC-CcEEEEEcC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD-GLLKVLKLD   44 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~-~~v~~~~~~   44 (110)
                      .+-..-+.++||||++.+...... +.+..++..
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            344455669999999877666543 566666665

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.11  E-value=3.2  Score=27.12  Aligned_cols=56  Identities=14%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec------CCCcEEEEeCCCCCC
Q psy11100         35 DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD------ETGLIIVWMLYKCND  104 (110)
Q Consensus        35 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~~~~i~~w~~~~~~~  104 (110)
                      +..+++||.....              ....-.+-.+.|..+.|..+.++++.+.      ....+-.||+.+..+
T Consensus        15 C~~lC~yd~~~~q--------------W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   15 CPGLCLYDTDNSQ--------------WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             CCEEEEEECCCCE--------------eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            4568999987654              2222233457899999987777777775      344577888877655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=84.84  E-value=4.3  Score=24.96  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=36.8

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ++..+.++..++.+..+|..++.              .+-..... ..+.... ...+..++.+..++.+..+|..+|+.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~--------------~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGK--------------VLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSE--------------EEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--------------EEEEeecc-cccccee-eecccccccccceeeeEecccCCcce
Confidence            45556666788999999998775              22222211 1100001 11233444444566888888887776


Q ss_pred             hhh
Q psy11100        105 DDE  107 (110)
Q Consensus       105 ~~~  107 (110)
                      +.+
T Consensus        99 ~W~  101 (238)
T PF13360_consen   99 LWS  101 (238)
T ss_dssp             EEE
T ss_pred             eee
Confidence            544

...

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.69  E-value=4.5  Score=27.71  Aligned_cols=70  Identities=14%  Similarity=0.036  Sum_probs=31.5

Q ss_pred             EEEEecCCCEEEE-EecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccC-CCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         19 CLAWHQNQGWIAV-GGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-GKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        19 ~~~~~p~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      .-+|.++|+.|+. +..+|  .+...|+.+..               +.++.... .......++|++..++-......|
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l  104 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSL  104 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCE---------------EEECccCCCCCccceEEecCCCeEEEEECCCeE
Confidence            3466788876544 44455  45566776664               23333221 212235556777766555555566


Q ss_pred             EEEeCCCCC
Q psy11100         95 IVWMLYKCN  103 (110)
Q Consensus        95 ~~w~~~~~~  103 (110)
                      +-.|+.+..
T Consensus       105 ~~vdL~T~e  113 (386)
T PF14583_consen  105 RRVDLDTLE  113 (386)
T ss_dssp             EEEETTT--
T ss_pred             EEEECCcCc
Confidence            666766543

>PRK10115 protease 2; Provisional

Probab=84.65  E-value=14  Score=27.38  Aligned_cols=72  Identities=11%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             ceEEEEEecCCCEEEEEecC-C----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-c
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD-G----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-D   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~   89 (110)
                      .+....++|+|++++.+... |    .+++.|+.++..             ....+..   .-..++|.+++..|+-. .
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-------------l~~~i~~---~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-------------YPELLDN---VEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-------------CCccccC---cceEEEEeeCCCEEEEEEe
Confidence            46668889999987766432 3    466777765430             0111111   11458999988764433 2


Q ss_pred             CC-----CcEEEEeCCCCC
Q psy11100         90 ET-----GLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~-----~~i~~w~~~~~~  103 (110)
                      .+     ..++.+++.++.
T Consensus       192 ~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        192 HPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             cCCCCCCCEEEEEECCCCh
Confidence            22     356677777663

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.56  E-value=5.4  Score=28.33  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             CceEEEEEec----CCCEEEEEecCCcEEEEEcCCCC
Q psy11100         15 TKVNCLAWHQ----NQGWIAVGGDDGLLKVLKLDTGK   47 (110)
Q Consensus        15 ~~v~~~~~~p----~~~~l~~~~~~~~v~~~~~~~~~   47 (110)
                      +.+...+.++    +..++++.+.|+.+|+||+.+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence            3455566666    67789999999999999999875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.46  E-value=5.2  Score=28.75  Aligned_cols=60  Identities=12%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~  100 (110)
                      .-+++.++..|-+++||--..+              .-..+.+-...|..+..+.+|.++++.+ ...|.+.|++
T Consensus       573 sGyIa~as~kGDirLyDRig~r--------------AKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKR--------------AKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcch--------------hhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            3468888999999999865544              3344556677888999999999966555 3456666653

>KOG1832|consensus

Probab=84.07  E-value=2.3  Score=32.45  Aligned_cols=41  Identities=12%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ..+..++....+++|+-+.++++-|...|.|+++++.+|.-
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~ 1135 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM 1135 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc
Confidence            45666778889999999999999999999999999998864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=83.86  E-value=7.8  Score=23.80  Aligned_cols=68  Identities=21%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-ecc---CCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGH---SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK  101 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~  101 (110)
                      +..+..+..++.+..+|..++.              .+-.. ...   ............+..++.+..++.|..+|+++
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred             ccccccccceeeeEecccCCcc--------------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC
Confidence            3334455566778888877765              22221 111   01112222222366677777789999999998


Q ss_pred             CCChhh
Q psy11100        102 CNDDDE  107 (110)
Q Consensus       102 ~~~~~~  107 (110)
                      |+.+.+
T Consensus       142 G~~~w~  147 (238)
T PF13360_consen  142 GKLLWK  147 (238)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            876543

...

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=83.04  E-value=13  Score=25.68  Aligned_cols=31  Identities=29%  Similarity=0.266  Sum_probs=26.5

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~   44 (110)
                      .+++..++.||+|+++|....+|.+.+....
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            3689999999999999999888998887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645|consensus

Probab=83.04  E-value=1.3  Score=30.43  Aligned_cols=44  Identities=18%  Similarity=0.089  Sum_probs=34.9

Q ss_pred             eeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEEEEeCCCCCCh
Q psy11100         62 MNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        62 ~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      .+..+..+...|.+++|||..+ ++..++.+..|.+.|+++...+
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v  229 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV  229 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee
Confidence            3445666778899999999887 4777888999999999876544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.20  E-value=2.1  Score=18.68  Aligned_cols=26  Identities=8%  Similarity=-0.112  Sum_probs=15.1

Q ss_pred             CCCCe-EEEecCCCcEEEEeCCCCCCh
Q psy11100         80 EQYEK-LTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        80 ~~~~~-l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      |+++. +++...++.|.++|..++..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~   27 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVI   27 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            34554 344445677777777665544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.18  E-value=18  Score=26.42  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      .+.|..+.|+|||..++... ++.|.+--+....  .+.. ...    ....+. .-...+..+.|..++.+++. ..++
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~--~G~~-~l~----~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~~  517 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE--DGQY-ALT----NPREVGPGLGDTAVSLDWRTGDSLVVG-RSDP  517 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC--CCce-eec----ccEEeecccCCccccceEecCCEEEEE-ecCC
Confidence            45799999999999877765 4667663332211  0000 000    011122 22334578899999886533 3333


Q ss_pred             cEEEEe
Q psy11100         93 LIIVWM   98 (110)
Q Consensus        93 ~i~~w~   98 (110)
                      .-.+|.
T Consensus       518 ~~~v~~  523 (591)
T PRK13616        518 EHPVWY  523 (591)
T ss_pred             CCceEE
Confidence            333444

>KOG4499|consensus

Probab=81.06  E-value=8.6  Score=24.88  Aligned_cols=34  Identities=9%  Similarity=-0.157  Sum_probs=27.8

Q ss_pred             EEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100         76 IIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        76 ~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      ++..-+|.+++.+-..+++...|+.+|+.+.|+|
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence            4445578888888889999999999999988765

>smart00564 PQQ beta-propeller repeat

Probab=80.68  E-value=3  Score=17.15  Aligned_cols=24  Identities=4%  Similarity=-0.188  Sum_probs=17.7

Q ss_pred             eEEEecCCCcEEEEeCCCCCChhh
Q psy11100         84 KLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        84 ~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      .+..++.++.+..+|.++|+...+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            455666788999999888876544

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=80.20  E-value=15  Score=24.46  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=23.2

Q ss_pred             eeccCCCeEEEEEcCCCCeEEEecC-CCcEEEEeCC
Q psy11100         66 LQGHSGKVRAIIWNEQYEKLTSSDE-TGLIIVWMLY  100 (110)
Q Consensus        66 ~~~~~~~v~~~~~s~~~~~l~s~~~-~~~i~~w~~~  100 (110)
                      ...+-..-+.++|||+++.+..+.. .+.|.-+++.
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            3333445578999999987666654 4667766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-07
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	5e-07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-05
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-05
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	7e-06
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	7e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-05
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	6e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-04
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-04
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-04
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	4e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	5e-04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	5e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	9e-04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	9e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	9e-04

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 10  AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH 69
           ++  ++K N L W  N   IA   D+G L++   +    +   +               H
Sbjct: 63  SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM----------ARFSNH 112

Query: 70  SGKVRAIIWN 79
           S  V+ + +N
Sbjct: 113 SSSVKTVKFN 122

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 17  VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           V  + ++  Q   +A GG++G + +  ++   ES      +N              +V +
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES-----PSNYTPLTPGQSMSSVDEVIS 170

Query: 76  IIWNEQYEK-LTSSDETGLIIVW 97
           + WN+       S+  +    +W
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIW 193

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 17  VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           V  LAW+Q+     A  G      +  L   KE          +L+      G   ++  
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI--------HLSYTSPNSGIKQQLSV 219

Query: 76  IIWN--EQYEKLTSS--DETGLIIVW 97
           + W+        T++  D    I++W
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIW 245

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 15  TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
            K+  +    +  W+ +G  +G + V  +D  + S+ ++   +     +         + 
Sbjct: 99  GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL---DNLQKSSFFPAARLSPIV 155

Query: 75  AIIWNEQYEKLTSSDETGLIIVW 97
           +I WN +           + + +
Sbjct: 156 SIQWNPRDIGTVLISYEYVTLTY 178

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 17  VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           +  + W  +   I A  G D  L V  L    E      A +    +     GH+ K+  
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383

Query: 76  IIWNEQYEKL---TSSDETGLIIVW 97
             WN     +    S D    + VW
Sbjct: 384 FSWNPNEPWIICSVSEDNI--MQVW 406

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 17  VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           VNCL+++    +I A G  D  + +  L   K                 S + H  ++  
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL-------------HSFESHKDEIFQ 326

Query: 76  IIWNEQYEK-LTSSDETGLIIVWMLYKCNDDDE 107
           + W+   E  L SS     + VW L K  ++  
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 5   LSKKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN 63
           +  +I I +  +VN   +  QN   IA       + V                  +L   
Sbjct: 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL--- 175

Query: 64  QSLQGHSGKVRAIIWNEQYEK-LTSSDETGLIIVW 97
             L+GH  +   + WN      L S+ +   I +W
Sbjct: 176 -RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 15/84 (17%)

Query: 17  VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           V  +AWH     +     DD  L +   DT   +T + +          ++  H+ +V  
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIW--DTRNNNTSKPS---------HTVDAHTAEVNC 282

Query: 76  IIWNEQYEKL--TSSDETGLIIVW 97
           + +N   E +  T S +   + +W
Sbjct: 283 LSFNPYSEFILATGSAD-KTVALW 305

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 11  IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
             ++ + +    H++   +A+   DG+L V  L +  +            A ++      
Sbjct: 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ------------ASSRFPVDEE 214

Query: 71  GKVRAIIWNEQ-YEKLTSSDETGLIIVWMLYK 101
            K++ + + +  Y  +   D+T  ++ + L K
Sbjct: 215 AKIKEVKFADNGYWMVVECDQT--VVCFDLRK 244

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 16/81 (19%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + W  +  +++VG  +GL+ +  +++  +               +++ GH  +V  +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTK--------------LRTMAGHQARVGCL 182

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            WN     L+S   +G I   
Sbjct: 183 SWNRHV--LSSGSRSGAIHHH 201

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 17/93 (18%)

Query: 7   KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL 66
           K   +P +   +C+A   ++ ++AVGG D  + V KL     S  +              
Sbjct: 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK-------------T 487

Query: 67  QGHSGKVRAIIW--NEQYEKLTSSDETGLIIVW 97
             H  ++ ++ +  N  +  L ++D++  +I +
Sbjct: 488 IVHPAEITSVAFSNNGAF--LVATDQSRKVIPY 518

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 15/83 (18%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           +  +A+  N  ++        +    +    E           LA   S   H+ KV  +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----------LAHTNSWTFHTAKVACV 542

Query: 77  IWNEQYEKL--TSSDETGLIIVW 97
            W+    +L   S D +  +IVW
Sbjct: 543 SWSPDNVRLATGSLDNS--VIVW 563

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
              L     +  +     +G +  +  + G                 Q   GH+  + A+
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPELGSID--------------QVRYGHNKAITAL 330

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
             +   + L S+D  G I  W
Sbjct: 331 SSSADGKTLFSADAEGHINSW 351

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           +  +AW Q  G +A    D  ++V + D   +      +           Q HS  V  +
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA-----HLHQAHSQDVNCV 309

Query: 77  IWNEQYEKL---TSSDETGLIIVW 97
            WN +   L    S D    +  W
Sbjct: 310 AWNPKEPGLLASCSDDGE--VAFW 331

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
          +++   LAW+     +A  G D  +++   +               +  +   +GH   V
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----------ICKSVLSEGHQRTV 64

Query: 74 RAIIW 78
          R + W
Sbjct: 65 RKVAW 69

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + WH +Q  +A    D  +K+ + +                     L+GH   V ++
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT------------LEGHESTVWSL 200

Query: 77  IWN 79
            ++
Sbjct: 201 AFD 203

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 18/83 (21%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V    +   + WI VG DD  ++V   +TG++                  + H   +R+I
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--------------VVDFEAHPDYIRSI 103

Query: 77  IWNEQYEKLTSS--DETGLIIVW 97
             +     + S   D T  + +W
Sbjct: 104 AVHPTKPYVLSGSDDLT--VKLW 124

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 18/84 (21%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           +  +A H  + ++  G DD  +K+   +                 + Q+ +GH   V  +
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-------------LEQTFEGHEHFVMCV 146

Query: 77  IWNEQYEKL---TSSDETGLIIVW 97
            +N +          D T  + VW
Sbjct: 147 AFNPKDPSTFASGCLDRT--VKVW 168

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 14/60 (23%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
          V  + +H  + W+      G +++   +T                  +S+Q     VRA 
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------------EVRSIQVTETPVRAG 61

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 16/83 (19%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V C A+  +  +IA    D  +K+    TGK                 +   HS +V   
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKL--------------VHTYDEHSEQVNCC 705

Query: 77  IW--NEQYEKLTSSDETGLIIVW 97
            +     +  L +      + +W
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLW 728

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           VN   +  +   +A    DG L++  + +  E    +      L+     +     V+  
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANE-RKSINVKRFFLSSEDPPEDVEVIVKCC 804

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            W+   +K+  + +  +++  
Sbjct: 805 SWSADGDKIIVAAKNKVLLFD 825

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 17   VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
            V+C     +  ++A G +DG +K+++L   +                 S  GH   VR I
Sbjct: 964  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--------------SSGVGHKKAVRHI 1009

Query: 77   IWNEQYEKLTSSDETGLIIVW 97
             +    + L SS E  +I VW
Sbjct: 1010 QFTADGKTLISSSEDSVIQVW 1030

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V    + Q+   IA  G D  L+V K +TG++                 ++ H  +V   
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKL--------------LDIKAHEDEVLCC 663

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            ++     + +      + +W
Sbjct: 664 AFSSDDSYIATCSADKKVKIW 684

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%)

Query: 17   VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
            V   A   +    +    D   K+   D                     L+GH+G VR  
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------HELKGHNGCVRCS 1133

Query: 77   IWNEQYEKLTSSDETGLIIVW 97
             ++     L + D+ G I +W
Sbjct: 1134 AFSLDGILLATGDDNGEIRIW 1154

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 15/81 (18%)

Query: 17   VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
            V      Q+   +     DG +KV  + TG+                +    H G V + 
Sbjct: 1047 VKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIE--------------RDFTCHQGTVLSC 1091

Query: 77   IWNEQYEKLTSSDETGLIIVW 97
              +    K +S+       +W
Sbjct: 1092 AISSDATKFSSTSADKTAKIW 1112

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 14  NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG--QVAAANVNLAMNQSLQGHSG 71
           ++ V  +    N    AV   DG + VLK++  ++ +    +    +     ++   +  
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170

Query: 72  KVRAIIWN-EQYEKLTSSDETGLIIVW 97
            VR   +  E+   L +      +I++
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIF 197

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 23/90 (25%)

Query: 17  VNCLAWHQNQGW---IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
             CL+W  ++     +AV   +  +   +   GK                  L GH   +
Sbjct: 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK------------LPGHKSLI 217

Query: 74  RAIIW--NEQYEKLT----SSDETGLIIVW 97
           R+I W  +             D    I ++
Sbjct: 218 RSISWAPSIGRWYQLIATGCKDGR--IRIF 245

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)

Query: 17  VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
           +  + W     G  IA    D  +K+ +     E   Q   +        +L    G + 
Sbjct: 60  IVAIDWASPEYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCTLNDSKGSLY 114

Query: 75  AIIWNEQYEKLTSSDETGLIIV 96
           ++ +        +    GL + 
Sbjct: 115 SVKF--------APAHLGLKLA 128

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 5   LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ 64
           +S  +  P   K + ++   ++ +IA G   G + +  L + +  T +            
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------------ 526

Query: 65  SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96
                + K+ AI W    +     +    ++ 
Sbjct: 527 -WAFRTSKINAISWKPAEKGANEEEIEEDLVA 557

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 17  VNCLAWHQNQG----WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
           V  +AW  + G     IA    DG + +   D    +T             + L   +  
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP----------KLLHKFNDV 264

Query: 73  VRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109
           V  + W+     L  S     + +W   K + D +W 
Sbjct: 265 VWHVSWSITANILAVSGGDNKVTLW---KESVDGQWV 298

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
          ++C AW++++  IA+  ++  + + +    K                  L+ H+G+V  +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------LKEHNGQVTGV 58

Query: 77 IW 78
           W
Sbjct: 59 DW 60

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 8/93 (8%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V+ + +  +   +A  G D  + +      ++    +           +++     +R++
Sbjct: 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL----------ITVKLSQLPLRSL 257

Query: 77  IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109
           +W  +   + +      I++       ++  W 
Sbjct: 258 LWANESAIVAAGYNYSPILLQ-----GNESGWA 285

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 4   YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST---GQVAAANVNL 60
           ++SK +  P  + +  L WH N   +A G  D    VL              V  + +  
Sbjct: 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195

Query: 61  AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
               +     G V A+ ++     L  +     + + 
Sbjct: 196 NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 15/64 (23%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + W  +   +     D   K+  L + +                  +  H   V+ I
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ---------------IAQHDAPVKTI 133

Query: 77  IWNE 80
            W +
Sbjct: 134 HWIK 137

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 17  VNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           V  +AW   N   IA G +D  + V ++  G                  +L+GH+ +V  
Sbjct: 84  VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV-------ITLEGHTKRVGI 136

Query: 76  IIWNEQYEKL---TSSDETGLIIVW 97
           + W+   + +      D    I+VW
Sbjct: 137 VAWHPTAQNVLLSAGCDNV--ILVW 159

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 3/41 (7%)

Query: 12  PNNTKVNCLAWHQNQ---GWIAVGGDDGLLKVLKLDTGKES 49
            +   + C  W++        A     GLL +  L      
Sbjct: 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHHH 521

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
              +   +  G IA G ++G +++ +L T +           N     S+  +S  +R++
Sbjct: 189 ATSVDISER-GLIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSV 239

Query: 77  IW 78
            +
Sbjct: 240 KF 241

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%)

Query: 11  IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
           +P+   V  + W      +AVG  +G +        ++                    H 
Sbjct: 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKV--------IPCPPFYESDHP 240

Query: 71  GKVRAIIWNEQYE 83
            +V  ++W   Y 
Sbjct: 241 VRVLDVLWIGTYV 253

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + W  +   +AV  D   L V ++   +++        +N+   QS         ++
Sbjct: 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV 302

Query: 77  IWNEQYEKLTSSDETGLIIVW------MLYKCNDDDE 107
             + +  K+    E+ L++VW        +K   DDE
Sbjct: 303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 36.1 bits (84), Expect = 9e-04
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 23/88 (26%)

Query: 17  VNCLAW----HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
               AW    + +   +AV G  G+++++   T +                +   GH   
Sbjct: 72  FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--------------KHYVGHGNA 117

Query: 73  VRAIIWNEQYEKL---TSSDETGLIIVW 97
           +  + ++ +   L    S D    + +W
Sbjct: 118 INELKFHPRDPNLLLSVSKDHA--LRLW 143

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 13/82 (15%)

Query: 17  VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
           +  + ++Q     + V    G   +           QV                      
Sbjct: 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVF---------AKTDSWDYWYCC 168

Query: 76  IIWNEQYEKLTSSDETGLIIVW 97
           +  +   + L + D TG +++ 
Sbjct: 169 VDVSVSRQMLATGDSTGRLLLL 190

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 19/84 (22%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKL---DTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
           +N + +   +  +  GG D ++  + L                        +L GH G V
Sbjct: 62  LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL--------------YTLIGHQGNV 107

Query: 74  RAIIWNEQYEKLTSSDETGLIIVW 97
            ++ + +      S D+T    VW
Sbjct: 108 CSLSFQDGVVISGSWDKT--AKVW 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.79
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.73
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.72
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.71
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.71
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.7
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.7
2pm7_B	297	Protein transport protein SEC13, protein transport	99.68
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.68
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.67
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.67
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.67
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.66
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.66
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.66
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.66
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.66
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.65
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.65
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.65
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.65
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.64
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.64
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.64
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.64
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.63
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.63
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.63
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.62
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.62
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.61
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.61
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.61
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.61
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.6
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.6
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.6
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.59
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.59
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.59
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.59
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.59
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.59
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.58
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.58
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.58
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.58
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.58
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.56
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.56
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.55
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.55
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.55
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.55
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.54
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.54
2pm7_B	297	Protein transport protein SEC13, protein transport	99.54
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.54
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.53
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.53
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.53
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.53
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.53
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.53
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.53
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.52
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.52
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.52
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.52
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.52
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.52
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.52
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.51
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.51
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.51
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.5
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.5
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.49
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.49
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.49
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.49
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.49
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.49
3jro_A	753	Fusion protein of protein transport protein SEC13	99.49
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.49
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.48
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.48
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.48
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.46
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.46
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.45
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.45
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.45
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.44
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.44
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.43
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.43
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.43
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.42
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.4
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.39
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.38
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.38
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.38
3jro_A	753	Fusion protein of protein transport protein SEC13	99.37
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.35
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.31
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.31
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.26
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.25
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.22
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.21
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.18
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.11
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.04
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.98
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.71
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.7
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.65
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.6
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.59
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.57
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.52
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.48
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.47
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.42
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.42
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.41
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.4
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.39
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.24
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.2
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.13
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.11
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.06
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.02
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.02
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.0
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.0
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.96
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.86
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.84
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.84
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.73
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.69
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.36
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.32
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.3
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.27
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.17
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.11
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.01
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.98
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.97
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.94
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.9
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.78
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.4
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.21
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.48
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.32
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.29
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.8
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	94.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.52
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.28
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	90.82
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	89.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	88.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	86.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	86.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.44
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	86.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.91
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	84.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	83.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	83.28
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	82.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	80.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	80.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.69

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.79  E-value=3.1e-18  Score=110.99  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|+|++|++|+.|+.|++||+....              .+..+ .+|...|.+++|||+|+.|++++
T Consensus       266 ~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--------------~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          266 TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--------------MSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--------------EEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc--------------EEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            4688999999999999999999999999999999876              55554 68999999999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|++|++|++..+
T Consensus       332 ~D~tvrvw~ip~~  344 (365)
T 4h5i_A          332 AANTIHIIKLPLN  344 (365)
T ss_dssp             TTSEEEEEECCTT
T ss_pred             CCCeEEEEEcCCC
Confidence            9999999998643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.73  E-value=8.2e-17  Score=103.82  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~   88 (110)
                      ..+|.+.|.+++|+|+|+.|++++.|+.|++||+..+.              .+..+.+|...|.+++|+|++. .++++
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--------------VLSSYRAHAAQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEcCcCCceEEEEecCCCCCceeee
Confidence            34799999999999999999999999999999999876              6788899999999999999986 58899


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||+++++...++
T Consensus       189 s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          189 SEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             ETTSCEEEEETTSSSCEEEC
T ss_pred             ccccccccccccccceeeee
Confidence            99999999999988765543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.72  E-value=5.1e-17  Score=102.75  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...+|.+.|.+++|+|+++.+++++.|+.+++||+....              ....+..|...|.+++|+|++..+++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s   72 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--------------EVRSIQVTETPVRAGKFIARKNWIIV   72 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------------EEEEEECCSSCEEEEEEEGGGTEEEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------------eeEEeeccCCcEEEEEEeCCCCEEEE
Confidence            4455899999999999999999999999999999998876              56778889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||+.+++.+.++
T Consensus        73 ~s~d~~i~vwd~~~~~~~~~~   93 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGEKVVDF   93 (304)
T ss_dssp             EETTSEEEEEETTTCCEEEEE
T ss_pred             ECCCCEEEEEECCCCcEEEEE
Confidence            999999999999998766544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.71  E-value=8.7e-17  Score=108.39  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=69.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|++.|++++|+|||++|++++.|+.|++||.. ..              .+..+.+|...|.+++|+|++++|++++
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~--------------~~~~l~gh~~~V~~l~fspdg~~las~~   76 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASAS   76 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC--------------EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC--------------EEEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            46899999999999999999999999999999964 33              5678899999999999999999999999


Q ss_pred             CCCcEEEEeCC
Q psy11100         90 ETGLIIVWMLY  100 (110)
Q Consensus        90 ~~~~i~~w~~~  100 (110)
                      .|+.|++||..
T Consensus        77 ~d~~i~vWd~~   87 (577)
T 2ymu_A           77 DDKTVKLWNRN   87 (577)
T ss_dssp             TTSCEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            99999999964

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.71  E-value=3.2e-16  Score=101.14  Aligned_cols=81  Identities=15%  Similarity=0.356  Sum_probs=73.1

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCcccccccceeeeEEee-c-cCCCeEEEEEcCCCCeE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVAAANVNLAMNQSLQ-G-HSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l   85 (110)
                      ...+|.+.|.+++|+|+|+++++++.|+. +++||+..+.              .+..+. + |...|.+++|+|++..+
T Consensus       190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--------------~~~~~~~g~h~~~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--------------LVREFRRGLDRADVVDMKWSTDGSKL  255 (355)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--------------EEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred             EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--------------EEEEEEcCCCCCcEEEEEECCCCCEE
Confidence            34589999999999999999999999998 9999999876              566776 4 88999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                      ++++.|++|++||++.+.
T Consensus       256 ~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          256 AVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEETTCEEEEEESSCCS
T ss_pred             EEEECCCEEEEEEccCCC
Confidence            999999999999997653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.71  E-value=9.5e-17  Score=105.30  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=76.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.++|.+++|+|++..+++|+.|+.|++||...+.              ....+.+|...|.+++|+|++..+++++.
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------FERTLKGHTDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence            4799999999999999999999999999999999876              56788899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      |++|++||+.+++.+.++
T Consensus       171 D~~i~iwd~~~~~~~~~~  188 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTM  188 (410)
T ss_dssp             TSCCCEEETTSSCEEECC
T ss_pred             CCeEEEEeCCCCceeEEE
Confidence            999999999887765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=101.53  Aligned_cols=84  Identities=15%  Similarity=0.299  Sum_probs=76.3

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|...|.+++|+|++++|++++.|+.+++||+....              ....+.+|...|.+++|+|++..+++++.
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--------------LAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--------------eeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            4788999999999999999999999999999998876              56778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      |+.|++||+.++..+.++
T Consensus       269 D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             TSCEEEEETTTTEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEE
Confidence            999999999988765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.70  E-value=4.3e-16  Score=98.34  Aligned_cols=86  Identities=17%  Similarity=0.373  Sum_probs=76.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|.+.|.+++|+|+++++++++.|+.+++|+.....              ....+..|...|.+++|+|++..++++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------------FEKTISGHKLGISDVAWSSDSNLLVSA   83 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--------------cchhhccCCCceEEEEEcCCCCEEEEE
Confidence            345899999999999999999999999999999998776              566788899999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||+.+++.+..+
T Consensus        84 ~~d~~i~vwd~~~~~~~~~~  103 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKCLKTL  103 (312)
T ss_dssp             ETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEE
Confidence            99999999999988765443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.68  E-value=8.9e-16  Score=96.75  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEEE
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s   87 (110)
                      ..+|.+.|.+++|+|+|+.|++++.|+.+++|++....            ......+.+|.+.|.+++|++.  +..|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------------BCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------------cEEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence            45899999999999999999999999999999997432            0145678899999999999864  889999


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      ++.|++|++||+++++
T Consensus        73 ~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGR   88 (297)
T ss_dssp             EETTTEEEEEEBSSSC
T ss_pred             EcCCCEEEEEEcCCCc
Confidence            9999999999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=7.7e-16  Score=98.12  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=76.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.+++|+|+++++++++.|+.+++||+....              ....+..|...|.+++|+|++..+++++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--------------RLGTLDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--------------hhhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence            44899999999999999999999999999999998876              6678888999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||+.+++.+..
T Consensus        94 ~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             TTTEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCcEEEE
Confidence            999999999998876543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.68  E-value=7.8e-16  Score=98.62  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=74.4

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.+.|.+++|+|++..+++++.|+.+++||+....              ....+..|...|.+++|+|++..+++++.
T Consensus       181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------------CRQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            4799999999999999999999999999999999876              66778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCh
Q psy11100         91 TGLIIVWMLYKCNDD  105 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~  105 (110)
                      |+.|++||+++++.+
T Consensus       247 d~~v~iwd~~~~~~~  261 (340)
T 1got_B          247 DATCRLFDLRADQEL  261 (340)
T ss_dssp             TSCEEEEETTTTEEE
T ss_pred             CCcEEEEECCCCcEE
Confidence            999999999876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.67  E-value=2.2e-15  Score=96.73  Aligned_cols=82  Identities=17%  Similarity=0.345  Sum_probs=72.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|...|.+++|+|++++|++++.|+.+++|+.....            ......+.+|...|.+++|+|++..|++++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD------------FECVTTLEGHENEVKSVAWAPSGNLLATCS  124 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-------------EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC------------eEEEEEccCCCCCceEEEEeCCCCEEEEEE
Confidence            45899999999999999999999999999999987653            124567889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .|+.|++||+.++.
T Consensus       125 ~D~~v~iwd~~~~~  138 (345)
T 3fm0_A          125 RDKSVWVWEVDEED  138 (345)
T ss_dssp             TTSCEEEEEECTTS
T ss_pred             CCCeEEEEECCCCC
Confidence            99999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.67  E-value=3.4e-15  Score=94.51  Aligned_cols=88  Identities=18%  Similarity=0.161  Sum_probs=73.7

Q ss_pred             ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ...+|++.|++++|+|+ +++|++|+.|+.|++||+......         .......+.+|...|.+++|+|++..+++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------YGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------SEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------cceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            34589999999999997 689999999999999999865310         01135667889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCCh
Q psy11100         88 SDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~  105 (110)
                      ++.|+.|++|+.......
T Consensus       104 ~~~d~~i~~~~~~~~~~~  121 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTT  121 (340)
T ss_dssp             EETTSEEEEEETTTTEEE
T ss_pred             EcccccceEEeeccccee
Confidence            999999999998876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.67  E-value=2.8e-15  Score=96.07  Aligned_cols=79  Identities=20%  Similarity=0.294  Sum_probs=72.8

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|...|.+++|+|++.++++++.|+.+++||+..+.              ....+.+|...|.+++|+|++..++++
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~~~~h~~~v~~v~~sp~~~~l~s~  136 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--------------TYKRFVGHQSEVYSVAFSPDNRQILSA  136 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--------------EEEEEECCCSCEEEEEECSSTTEEEEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------------EEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            345899999999999999999999999999999999876              667788999999999999999999999


Q ss_pred             cCCCcEEEEeCCC
Q psy11100         89 DETGLIIVWMLYK  101 (110)
Q Consensus        89 ~~~~~i~~w~~~~  101 (110)
                      +.|+.|++||+..
T Consensus       137 ~~d~~i~~wd~~~  149 (343)
T 2xzm_R          137 GAEREIKLWNILG  149 (343)
T ss_dssp             ETTSCEEEEESSS
T ss_pred             cCCCEEEEEeccC
Confidence            9999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.66  E-value=4.7e-16  Score=102.00  Aligned_cols=84  Identities=12%  Similarity=0.164  Sum_probs=76.2

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|++.|.+++|+|+++.+++|+.|+.+++||+....              .+..+.+|...|.+++|+|++..+++++
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            34799999999999999999999999999999998776              6677889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|++|++||++++..+.+
T Consensus       212 ~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             TTSEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCcEEEE
Confidence            999999999998876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.66  E-value=1e-15  Score=97.26  Aligned_cols=85  Identities=16%  Similarity=0.284  Sum_probs=68.0

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCe
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEK   84 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~   84 (110)
                      +.+..+|.+.|.+++|+|+|+.|++++.|+.+++||+....            ......+.+|...|.+++|++  ++..
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~~~   73 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------------QILIADLRGHEGPVWQVAWAHPMYGNI   73 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------------EEEEEEEECCSSCEEEEEECCGGGSSC
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------------cEEEEEEcCCCccEEEEEeCCCCCCCE
Confidence            34556899999999999999999999999999999998653            013567889999999999986  4889


Q ss_pred             EEEecCCCcEEEEeCCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~  103 (110)
                      |++++.|++|++||++++.
T Consensus        74 l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             EEEEETTSCEEEECCSSSC
T ss_pred             EEEEECCCEEEEEECCCCc
Confidence            9999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.66  E-value=2.4e-15  Score=95.71  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|...|.+++|+|++.++++++.|+.+++||+..+.              ....+.+|...|.+++|+|++..+++++
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s  126 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--------------TYQRFVGHKSDVMSVDIDKKASMIISGS  126 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------------eeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence            34899999999999999999999999999999999876              6678889999999999999999999999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .|++|++||++.
T Consensus       127 ~D~~i~vwd~~~  138 (319)
T 3frx_A          127 RDKTIKVWTIKG  138 (319)
T ss_dssp             TTSCEEEEETTS
T ss_pred             CCCeEEEEECCC
Confidence            999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.66  E-value=2.1e-15  Score=96.18  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.+.|.+++|+|++..+++++.|+.+++||+....              .+..+..|...|.+++|+|++..|++++.
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT--------------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE--------------EEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            4799999999999999999999999999999999876              67788899999999999999999999999


Q ss_pred             CCcEEEEeCC
Q psy11100         91 TGLIIVWMLY  100 (110)
Q Consensus        91 ~~~i~~w~~~  100 (110)
                      |+.|++||..
T Consensus       311 d~~i~vwd~p  320 (321)
T 3ow8_A          311 DQEIHIYDCP  320 (321)
T ss_dssp             TCCEEEEECC
T ss_pred             CCeEEEEeCC
Confidence            9999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.66  E-value=1.4e-15  Score=99.03  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=76.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.+++|+|+++.+++++.|+.+++||+....              ....+..|...|.+++|+|++..+++++
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--------------NPRTLIGHRATVTDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------CCEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--------------CceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence            34799999999999999999999999999999999876              5567888999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|+.|++||+++++....+
T Consensus       201 ~d~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          201 LDGTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             TTSCEEEEETTTTEEEEEE
T ss_pred             CCCcEEEeECCCCceeEEe
Confidence            9999999999988765443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.66  E-value=2.6e-15  Score=94.77  Aligned_cols=84  Identities=20%  Similarity=0.307  Sum_probs=76.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|...|.+++|+|+++.+++++.|+.+++||+....              ....+..|...|.+++|+|++..+++++
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~  126 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------------CLKTLKGHSNYVFCCNFNPQSNLIVSGS  126 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            34789999999999999999999999999999999876              6678889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||+++++.+..
T Consensus       127 ~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             TTSCEEEEETTTCCEEEE
T ss_pred             CCCcEEEEECCCCEEEEE
Confidence            999999999998876544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.66  E-value=2.4e-15  Score=95.02  Aligned_cols=78  Identities=21%  Similarity=0.323  Sum_probs=72.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...|.+++|+|+++.+++++.|+.+++||+..+.              ....+.+|...|.+++|+|++..+++++.|
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCC
Confidence            688899999999999999999999999999999876              667888999999999999999999999999


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      ++|++||++++.
T Consensus       119 ~~v~lWd~~~~~  130 (304)
T 2ynn_A          119 LTVKLWNWENNW  130 (304)
T ss_dssp             SCEEEEEGGGTT
T ss_pred             CeEEEEECCCCc
Confidence            999999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.66  E-value=2.5e-15  Score=94.72  Aligned_cols=87  Identities=18%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCe
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEK   84 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~   84 (110)
                      +.+..+|.+.|.+++|+|+++++++++.|+.+++|++....          ........+..|...|.+++|+|  ++..
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----------SNWELSDSWRAHDSSIVAIDWASPEYGRI   73 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----------CCEEEEEEEECCSSCEEEEEECCGGGCSE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----------CcceecceeccCCCcEEEEEEcCCCCCCE
Confidence            45667999999999999999999999999999999998653          01124566778999999999999  5899


Q ss_pred             EEEecCCCcEEEEeCCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~  103 (110)
                      +++++.|+.|++||+.++.
T Consensus        74 l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             EEEEETTSCEEEEEECTTS
T ss_pred             EEEEcCCCeEEEEecCCCc
Confidence            9999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.65  E-value=1.1e-15  Score=97.17  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             eeccCCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      .....+|++.|.+++|+|++ +++++++.|+.+++|++.....   .      .......+.+|...|.+++|+|++..+
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~------~~~~~~~~~~h~~~v~~~~~s~dg~~l   80 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---K------FGVPVRSFKGHSHIVQDCTLTADGAYA   80 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---E------EEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---c------ccccceEEeCCcccEEEEEECCCCCEE
Confidence            33456899999999999964 8999999999999999874320   0      001356788999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCChhhh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++++.|++|++||+.+++.+.++
T Consensus        81 ~s~s~D~~v~~wd~~~~~~~~~~  103 (319)
T 3frx_A           81 LSASWDKTLRLWDVATGETYQRF  103 (319)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCEEEEEECCCCCeeEEE
Confidence            99999999999999988765443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.65  E-value=1.4e-15  Score=104.12  Aligned_cols=83  Identities=18%  Similarity=0.319  Sum_probs=73.0

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-------ccCCCeEEEEEcCCC
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-------GHSGKVRAIIWNEQY   82 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~   82 (110)
                      ..+|.+.|.+++|+|+|+.+++++.|+.+++||...+.              ....+.       +|.+.|.+++|+|++
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--------------~~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--------------KTGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--------------EeeeeccccccccccCCCEEEEEECCCC
Confidence            34799999999999999999999999999999998765              334442       689999999999999


Q ss_pred             CeEEEecCCCcEEEEeCCCCCChh
Q psy11100         83 EKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      ..|++++.|++|++||+.+++...
T Consensus       252 ~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          252 TKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceee
Confidence            999999999999999999876544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.65  E-value=9.4e-16  Score=99.59  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=73.4

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...+|.+.|.+++|+|++++|++++.|+.|++||.....              ....+..|...|.+++|+|++..+++
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--------------~~~~~~~h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--------------KTHAIKLHCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------------EEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------cceEEecCCCCEEEEEECCCCCEEEE
Confidence            4456899999999999999999999999999999998876              56778889999999999999999999


Q ss_pred             ecCCCcEEEEeCCC
Q psy11100         88 SDETGLIIVWMLYK  101 (110)
Q Consensus        88 ~~~~~~i~~w~~~~  101 (110)
                      ++.|+.+++|++.+
T Consensus       126 ~~~d~~v~iw~~~~  139 (380)
T 3iz6_a          126 GGLDSACSIFNLSS  139 (380)
T ss_dssp             CCSSSCCEEEECCC
T ss_pred             eeCCCcEEEEECCC
Confidence            99999999999865

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.65  E-value=6.4e-15  Score=94.36  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ....+|.+.|.+++|+|+++++++++.|+.+++||.....              ....+..|...|.+++|+|++..+++
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~s  114 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--------------KVHAIPLRSSWVMTCAYAPSGNYVAC  114 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--------------EEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--------------cceEeecCCccEEEEEECCCCCEEEE
Confidence            3455899999999999999999999999999999998876              56777889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      ++.|+.+++|++.++.
T Consensus       115 ~~~d~~v~iw~~~~~~  130 (340)
T 1got_B          115 GGLDNICSIYNLKTRE  130 (340)
T ss_dssp             EETTCEEEEEETTTCS
T ss_pred             EeCCCeEEEEECccCC
Confidence            9999999999997653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.64  E-value=1e-15  Score=99.95  Aligned_cols=84  Identities=17%  Similarity=0.086  Sum_probs=71.2

Q ss_pred             cCCCCCceEEEEEec--------CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC
Q psy11100         10 AIPNNTKVNCLAWHQ--------NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ   81 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p--------~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~   81 (110)
                      ..+|++.|.+++|+|        ++++|++++.|+++++||+....              .......|...|.+++|+|+
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--------------~~~~~~~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--------------PILAGYPLSSPGISVQFRPS  197 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--------------EEEEEEECSSCEEEEEEETT
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--------------eeeeecCCCCCcEEEEECCC
Confidence            458999999999998        78999999999999999998765              45566778899999999998


Q ss_pred             CC-eEEEecCCCcEEEEeCCCCCChhh
Q psy11100         82 YE-KLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        82 ~~-~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      +. .+++++.|++|++||+++++...+
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC----
T ss_pred             CCceEEecCCCCEEEEEECCCCccccc
Confidence            75 699999999999999998876544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.64  E-value=5.2e-15  Score=94.82  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             eccCCCCCceEEEEE-----ec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC
Q psy11100          8 KIAIPNNTKVNCLAW-----HQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ   81 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~-----~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~   81 (110)
                      ....+|++.|.+++|     ++ ++++|++|+.|+.+++||+......       .........+.+|...|.+++|+|+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-------~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-------GYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-------SBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-------cccccccchhccCCCceEEEEECCC
Confidence            345589999999999     76 8999999999999999998754300       0001134567889999999999999


Q ss_pred             CCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         82 YEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        82 ~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +..+++++.|++|++||+++++.+..+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~  114 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRF  114 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999999999999999988765443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.5e-15  Score=94.83  Aligned_cols=83  Identities=22%  Similarity=0.341  Sum_probs=67.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.+++|+|++++|++++.|+.+++||+....          ........+..|...|.+++|+|++..|++++
T Consensus       103 ~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~----------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  172 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG----------EEYECISVLQEHSQDVKHVIWHPSEALLASSS  172 (330)
T ss_dssp             EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC----------CCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC----------CCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence            35799999999999999999999999999999995321          00124567788999999999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|++|++||..++
T Consensus       173 ~D~~i~iW~~~~~  185 (330)
T 2hes_X          173 YDDTVRIWKDYDD  185 (330)
T ss_dssp             TTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCC
Confidence            9999999998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.64  E-value=3.5e-15  Score=96.24  Aligned_cols=79  Identities=18%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~   88 (110)
                      .+|.+.|.+++|+|++ .+|++++.|+.|++||+....               +..+.+|.+.|.+++|+|++.. ++++
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------~~~~~~H~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------LFRSQAHRDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------EEEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------EEEEcCCCCCEEEEEEeCCCCeEEEEE
Confidence            3799999999999997 579999999999999998764               3457789999999999999875 7799


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      +.|++|++|++.+...
T Consensus       319 s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          319 GWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             ETTSCEEEEECCC---
T ss_pred             cCCCeEEEEECCCCCC
Confidence            9999999999987543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.63  E-value=6.3e-15  Score=94.13  Aligned_cols=83  Identities=13%  Similarity=0.399  Sum_probs=63.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.|.+++|+|+++.+++++.|+.+++|+.......       .........+.+|...|.+++|+|++..|++++.|
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D  128 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD  128 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence            39999999999999999999999999999998643200       00112456778899999999999999999999999


Q ss_pred             CcEEEEeCCC
Q psy11100         92 GLIIVWMLYK  101 (110)
Q Consensus        92 ~~i~~w~~~~  101 (110)
                      ++|++||+..
T Consensus       129 ~~v~iwd~~~  138 (330)
T 2hes_X          129 KSVWIWETDE  138 (330)
T ss_dssp             SCEEEEECCT
T ss_pred             CEEEEEeccC
Confidence            9999999953

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.63  E-value=3.9e-15  Score=96.18  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~   88 (110)
                      .+|...|.+++|+|++ ++|++++.|+.|++||+....              .. ...+|.+.|.+++|+| ++..|+++
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--------------~~-~~~~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--------------VF-RDLSHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--------------EE-EECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--------------Ee-EECCCCCCEEEEEEeCCCCCEEEEE
Confidence            3788999999999987 579999999999999998765              33 3457999999999998 78899999


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      +.|++|++|++.+.
T Consensus       331 s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          331 GWDHKVLHHHLPSE  344 (357)
T ss_dssp             ETTSCEEEEECC--
T ss_pred             cCCCeEEEEECCCC
Confidence            99999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.63  E-value=2.4e-15  Score=99.13  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~   89 (110)
                      +|...|++++|+| ++.+|++|+.||.|++||+.....            .....+.+|.+.|.+++|+| ++..|++++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------------PTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------------CEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------------eeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            6788999999999 567899999999999999986540            12344567999999999998 678899999


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .|++|++||++++.
T Consensus       185 ~D~~v~iwd~~~~~  198 (435)
T 4e54_B          185 MEGTTRLQDFKGNI  198 (435)
T ss_dssp             SSSCEEEEETTSCE
T ss_pred             CCCEEEEeeccCCc
Confidence            99999999997653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.63  E-value=4e-15  Score=97.02  Aligned_cols=77  Identities=18%  Similarity=0.375  Sum_probs=70.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ..|.+++|+|+|+++++++.|+.+++||+....              ....+.+|...|.+++|+|++..+++++.|++|
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v  189 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  189 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcE
Confidence            359999999999999999999999999998876              567788999999999999999999999999999


Q ss_pred             EEEeCCCCCCh
Q psy11100         95 IVWMLYKCNDD  105 (110)
Q Consensus        95 ~~w~~~~~~~~  105 (110)
                      ++||+++++..
T Consensus       190 ~iwd~~~~~~~  200 (393)
T 1erj_A          190 RIWDLRTGQCS  200 (393)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCeeE
Confidence            99999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.62  E-value=5.6e-15  Score=95.43  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=74.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~   89 (110)
                      .+|.+.|.+++|+|+++.+++++.|+.|++||.....              ....+..|...|.+++|+|++. .+++++
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--------------VLKSYNAHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEcCCCCCEEEEEEccCCCceeeeec
Confidence            3789999999999999999999999999999999876              6778889999999999999886 588999


Q ss_pred             CCCcEEEEeCCCCCChh
Q psy11100         90 ETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~  106 (110)
                      .|+.|++||+++++...
T Consensus       202 ~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          202 EDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             TTSCEEECCTTSSSCBC
T ss_pred             cCCceEEEECCCCceee
Confidence            99999999999876544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.62  E-value=4e-15  Score=93.80  Aligned_cols=97  Identities=19%  Similarity=0.376  Sum_probs=74.8

Q ss_pred             CCCCCceEEEEEecCC----CEEEEEecCCcEEEEEcCCCCCcCCccc--------------------------------
Q psy11100         11 IPNNTKVNCLAWHQNQ----GWIAVGGDDGLLKVLKLDTGKESTGQVA--------------------------------   54 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~----~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------------------------------   54 (110)
                      .+|.+.|.+++|+|++    .++++++.|+.+++||+...........                                
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence            3689999999999998    7899999999999999976421100000                                


Q ss_pred             ccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         55 AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ........+..+.+|...|.+++|+|++..|++++.|+.|++|++.+++....
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            00111235667788999999999999999999999999999999998865543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=92.42  Aligned_cols=85  Identities=13%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             ccCCCCCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          9 IAIPNNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      ...+|.+.|.+++|+|+   |.++++++.|+.+++|++.....            .....+..|...|.+++|+|++..+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------TIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------EEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------eeEEEeccccCCEEEEEECcCCCEE
Confidence            44589999999999999   59999999999999999987320            1336677899999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCh
Q psy11100         86 TSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ++++.|+.|++||+.+++..
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~  121 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAI  121 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEE
T ss_pred             EEEcCCCcEEEEEcCCCCce
Confidence            99999999999999887643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.61  E-value=8.3e-15  Score=95.40  Aligned_cols=91  Identities=22%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEEe
Q psy11100         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~   88 (110)
                      .+|.+.|.+++|+| ++..+++++.|+.|++|++......    ...   ......+.+|...|.+++|+|++ ..++++
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~----~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV----LPL---REPVITLEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS----SCB---CSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc----ccc---CCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence            37999999999999 8999999999999999999876300    000   01356778899999999999998 589999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||+++++....+
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEECCCCCccEEE
Confidence            99999999999988765443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.61  E-value=8.2e-15  Score=95.15  Aligned_cols=83  Identities=12%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             cCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..+|...|.++.|+| ++..+++|+.|+.+++||+....             .....+.+|...|.+++|+|++..++++
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~  267 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------------RAVRTYHGHEGDINSVKFFPDGQRFGTG  267 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-------------CCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-------------cceEEECCcCCCeEEEEEecCCCeEEEE
Confidence            357999999999987 78999999999999999997432             1456788899999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|++|++||++++..+
T Consensus       268 s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             CSSSCEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCcEE
Confidence            99999999999987644

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.61  E-value=9.5e-15  Score=99.98  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             CCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|++. .+++++.|+.+++||.....              ....+.+|...|.+++|+|++..+++++
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------------FKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------------EeeeeccccCceEEEEECCCCCEEEEEE
Confidence            47999999999999986 59999999999999987654              5677889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|++|++||+.+++...+
T Consensus       210 ~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             TTSCEEEEETTTCCEEEE
T ss_pred             CCCcEEEEECCCCcEeee
Confidence            999999999988765443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.60  E-value=3e-14  Score=91.44  Aligned_cols=83  Identities=17%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.+++|+|++++|++++.|+.+++||+....           .......+..|...|.+++|+|++..+++++
T Consensus       101 ~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A          101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-----------EYECVSVLNSHTQDVKHVVWHPSQELLASAS  169 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-----------CEEEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred             ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-----------CeEEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence            44799999999999999999999999999999998653           1124556778999999999999999999999


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .|+.|++||.+++.
T Consensus       170 ~d~~i~~w~~~~~~  183 (345)
T 3fm0_A          170 YDDTVKLYREEEDD  183 (345)
T ss_dssp             TTSCEEEEEEETTE
T ss_pred             CCCcEEEEEecCCC
Confidence            99999999987764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.60  E-value=8.3e-15  Score=98.74  Aligned_cols=73  Identities=22%  Similarity=0.394  Sum_probs=67.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.+.|.+++|+|+|++|++++.|+.|++||.. +.              .+..+.+|...|.+++|+|+++.|++++.
T Consensus       505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~--------------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~  569 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASASS  569 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC--------------EEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            4799999999999999999999999999999964 33              56778899999999999999999999999


Q ss_pred             CCcEEEEe
Q psy11100         91 TGLIIVWM   98 (110)
Q Consensus        91 ~~~i~~w~   98 (110)
                      |++|++||
T Consensus       570 D~~i~~Wd  577 (577)
T 2ymu_A          570 DKTVKLWN  577 (577)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.6e-14  Score=92.47  Aligned_cols=80  Identities=13%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeee-EEeec-cCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN-QSLQG-HSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .|...+.+++|+|++.++++|+.|+.|++||+....              .. ..+.. |...|.+++|+|++..+++++
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--------------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD--------------QASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT--------------SCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC--------------CCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            455689999999999999999999999999999876              33 45666 899999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChh
Q psy11100         90 ETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~  106 (110)
                       ++.|++||+++++...
T Consensus       234 -~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             -SSBEEEEETTSSTTCB
T ss_pred             -CCeEEEEEcCCCCcce
Confidence             4599999999887653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.59  E-value=1.4e-14  Score=105.00  Aligned_cols=85  Identities=18%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|.+.|.+++|+|+|+++++++.|+.+++||.....              ....+.+|...|.+++|+|++..+++++
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--------------KLLDIKAHEDEVLCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--------------EEEEeccCCCCEEEEEEecCCCEEEEEe
Confidence            34799999999999999999999999999999999876              6678889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .|+.|++||+.+++.+..+
T Consensus       677 ~d~~v~vwd~~~~~~~~~~  695 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHTY  695 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCceEEEE
Confidence            9999999999988765543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=8.1e-15  Score=93.78  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=72.7

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~   86 (110)
                      +..+|.+.|.+++|+|+++++++++.|+.+++|++....            ......+..|...|.+++|+++  +..++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------------ceeeeEecCCCCcEEEEEeCCCCCCCEEE
Confidence            445899999999999999999999999999999998432            1145677889999999999987  89999


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +++.|+.|++||+.+++
T Consensus        74 s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             EEETTSCEEEEEEETTE
T ss_pred             EeccCCEEEEEEcCCCc
Confidence            99999999999998875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.59  E-value=2.6e-14  Score=98.85  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|...|.+++|+|+++++++++.|+.|++||+....              ....+.+|...|.+++|+|++..++++
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~  490 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV--------------STRRFVGHTKDVLSVAFSLDNRQIVSA  490 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--------------ceeEEeCCCCCEEEEEEeCCCCEEEEE
Confidence            345899999999999999999999999999999999876              567788999999999999999999999


Q ss_pred             cCCCcEEEEeCCCC
Q psy11100         89 DETGLIIVWMLYKC  102 (110)
Q Consensus        89 ~~~~~i~~w~~~~~  102 (110)
                      +.|++|++||....
T Consensus       491 s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          491 SRDRTIKLWNTLGE  504 (694)
T ss_dssp             ETTSCEEEECTTSC
T ss_pred             eCCCEEEEEECCCC
Confidence            99999999997543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.59  E-value=8e-15  Score=102.17  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +...+|.+.|.+++|+|+++++++++.+|.|++||...+.              ....+..|...|.+++|+|++..+++
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~   72 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------------EVRSIQVTETPVRAGKFIARKNWIIV   72 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------------EEEEEECCSSCEEEEEEEGGGTEEEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------------eEEEEecCCCcEEEEEEeCCCCEEEE
Confidence            3446799999999999999999999999999999998876              56778889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||+.+++.+.++
T Consensus        73 ~~~dg~i~vw~~~~~~~~~~~   93 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGEKVVDF   93 (814)
T ss_dssp             EETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEE
Confidence            999999999999988765543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.59  E-value=2.5e-14  Score=91.13  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe---eccCCCeEEEEEcCCCCeEEE
Q psy11100         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL---QGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      +|...|.+++|+| ++..+++++.|+.|++||+....              ....+   ..|...|.+++|+|++..+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  178 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--------------LVAIFGGVEGHRDEVLSADYDLLGEKIMS  178 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE--------------EEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe--------------EEEEecccccccCceeEEEECCCCCEEEE
Confidence            6999999999999 89999999999999999998775              44555   578899999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||+++++....+
T Consensus       179 ~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          179 CGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             EETTSCEEEEESCSHHHHHHH
T ss_pred             ecCCCCEEEEECCCCcccccc
Confidence            999999999999987665544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.59  E-value=2.4e-14  Score=90.58  Aligned_cols=94  Identities=18%  Similarity=0.305  Sum_probs=67.2

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----Cc---cc-ccc---------cce--------eee
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----GQ---VA-AAN---------VNL--------AMN   63 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~---~~-~~~---------~~~--------~~~   63 (110)
                      ..+|.+.|.+++|+|+++++++++.|+.+++||+.......     ..   .. .+.         ..+        ...
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~  290 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV  290 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEE
Confidence            34799999999999999999999999999999987653110     00   00 000         000        001


Q ss_pred             ---------EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100         64 ---------QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        64 ---------~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                               .....|...|.+++|+|+++.|++++.|+.|++||+++|.
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                     1123467789999999999999999999999999999885

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3.2e-14  Score=91.07  Aligned_cols=84  Identities=10%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             eccCCCCCceEEEEEec--CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCe
Q psy11100          8 KIAIPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~   84 (110)
                      .+..+|.+.|.+++|+|  +++++++++.|+.+++||+....              ..... ..+...+.+++|+|++..
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--------------QYIVHSAKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--------------EEEEECCCSSCCCCEEEECTTSCE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEEecCCCCceEEEEECCCCCE
Confidence            34457778999999999  99999999999999999999876              33333 334557999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCCh
Q psy11100         85 LTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      +++++.|+.|++||+++++..
T Consensus       185 lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTSC
T ss_pred             EEEEcCCCEEEEEECCCCCCC
Confidence            999999999999999988765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.58  E-value=4.2e-14  Score=91.19  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=72.3

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ....+|.+.|.+++|+|+++.+++++.|+.+++||.....              ....+..|...|.+++|+|++..+++
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~~~~v~~~~~sp~g~~las  123 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--------------KEHAVTMPCTWVMACAYAPSGCAIAC  123 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--------------cceEEecCCCCEEEEEECCCCCEEEE
Confidence            3445899999999999999999999999999999998776              45667778889999999999999999


Q ss_pred             ecCCCcEEEEeCCCC
Q psy11100         88 SDETGLIIVWMLYKC  102 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~  102 (110)
                      ++.|+.+.+|++...
T Consensus       124 g~~d~~i~v~~~~~~  138 (354)
T 2pbi_B          124 GGLDNKCSVYPLTFD  138 (354)
T ss_dssp             ESTTSEEEEEECCCC
T ss_pred             eeCCCCEEEEEEecc
Confidence            999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.58  E-value=2.9e-14  Score=91.92  Aligned_cols=82  Identities=15%  Similarity=0.226  Sum_probs=74.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~   89 (110)
                      +|.+.|.+++|+|++..+++++.|+.+++||+..+.              ....+.+|...|.+++|+|  ++..+++++
T Consensus       152 ~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ--------------LLQSFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence            689999999999999999999999999999999876              6778889999999999987  467899999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||+++++.+..
T Consensus       218 ~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          218 CDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             TTSCEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCcEEEE
Confidence            999999999998876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.58  E-value=1.7e-14  Score=93.98  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeEEE
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      .+|...|.+++|+|++ ..+++++.|+.+++||+....              ....+  ..|...|.+++|+|++..+++
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--------------AVLTLGPDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--------------EEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--------------ccEEEecCCCCCceEEEEECCCCCEEEE
Confidence            3799999999999997 699999999999999999876              55667  678999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||+++++.+.++
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEE
T ss_pred             EecCCcEEEEeCCCCceeeee
Confidence            999999999999987765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.58  E-value=5.6e-14  Score=88.19  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             CCCCceEEEEEecCCCEEEEE--ecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVG--GDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+...+..+.|+|++..++++  +.|+.+++||+....              .+..+.+|.+.|.+++|+|++..|++++
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--------------~~~~l~gH~~~V~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--------------KVAELKGHTSRVLSLTMSPDGATVASAA  303 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            456788999999998876654  478999999999876              6788999999999999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|++|++||+.+.
T Consensus       304 ~D~~v~iWd~~~~  316 (318)
T 4ggc_A          304 ADETLRLWRCFEL  316 (318)
T ss_dssp             TTTEEEEECCSCC
T ss_pred             cCCeEEEEECCCC
Confidence            9999999998753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.56  E-value=9e-14  Score=91.18  Aligned_cols=77  Identities=16%  Similarity=0.305  Sum_probs=67.7

Q ss_pred             CCCceEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +...+.++.|+|++..+++++  .|+.|++||.....              .+..+.+|.+.|.+++|+|+|..|++++.
T Consensus       319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--------------~v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--------------KVAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            446788999999998877654  78999999999876              67888999999999999999999999999


Q ss_pred             CCcEEEEeCCCCC
Q psy11100         91 TGLIIVWMLYKCN  103 (110)
Q Consensus        91 ~~~i~~w~~~~~~  103 (110)
                      |++|++||+....
T Consensus       385 D~tvriWdv~~~~  397 (420)
T 4gga_A          385 DETLRLWRCFELD  397 (420)
T ss_dssp             TTEEEEECCSCSS
T ss_pred             CCeEEEEECCCCC
Confidence            9999999987543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.56  E-value=3.9e-14  Score=92.36  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|...|.+++|+|+++.+++++.|+.+++||+.........  ...........+.+|...|.+++|+|++..+++++.
T Consensus       253 ~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~  330 (393)
T 1erj_A          253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS--KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  330 (393)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc--cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC
Confidence            478899999999999999999999999999999764310000  000111134567789999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhh
Q psy11100         91 TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~  107 (110)
                      |+.|++||+.+++.+..
T Consensus       331 D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          331 DRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             TSEEEEEETTTCCEEEE
T ss_pred             CCeEEEEECCCCeEEEE
Confidence            99999999998876543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3e-14  Score=101.49  Aligned_cols=92  Identities=11%  Similarity=0.056  Sum_probs=72.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC-------c--C---------------C-------cccccccce
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-------S--T---------------G-------QVAAANVNL   60 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~-------~--~---------------~-------~~~~~~~~~   60 (110)
                      +|...|.+++|+|+++.|++|+.|+.|++|++.....       .  .               .       ........+
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            7889999999999999999999999999999975420       0  0               0       000001123


Q ss_pred             eeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         61 AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        61 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      +++..+..|.+.|.+++|||+| +|++++.|++|++||++++..
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence            4567788899999999999999 999999999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.55  E-value=4e-14  Score=93.84  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ...+|.+.|.+++|+|+ +..+++++.|+.+++||+....              .......|...|.+++|+|+|..|++
T Consensus       144 ~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--------------~~~~~~~~~~~v~~v~wspdg~~las  209 (434)
T 2oit_A          144 LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--------------KVCATLPSTVAVTSVCWSPKGKQLAV  209 (434)
T ss_dssp             CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--------------EEEEEECGGGCEEEEEECTTSSCEEE
T ss_pred             ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--------------ceeeccCCCCceeEEEEcCCCCEEEE
Confidence            34468899999999998 8899999999999999998765              34445668889999999999999999


Q ss_pred             ecCCCcEEEEeCC
Q psy11100         88 SDETGLIIVWMLY  100 (110)
Q Consensus        88 ~~~~~~i~~w~~~  100 (110)
                      ++.|+.|++||++
T Consensus       210 gs~dg~v~iwd~~  222 (434)
T 2oit_A          210 GKQNGTVVQYLPT  222 (434)
T ss_dssp             EETTSCEEEECTT
T ss_pred             EcCCCcEEEEccC
Confidence            9999999999988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.55  E-value=6.9e-14  Score=89.09  Aligned_cols=82  Identities=15%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             CCCCceEEEEEecC----CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEE
Q psy11100         12 PNNTKVNCLAWHQN----QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~----~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~   86 (110)
                      .|...|.+++|+|+    +.++++++.|+.+++||+....              ....+..|...|.+++|+| ++..++
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--------------CIKHYVGHGNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--------------EEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--------------EeeeecCCCCcEEEEEECCCCCCEEE
Confidence            37788999999998    6789999999999999998876              5677888999999999999 899999


Q ss_pred             EecCCCcEEEEeCCCCCChhh
Q psy11100         87 SSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      +++.|+.|++||+++++....
T Consensus       133 s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             EEETTSCEEEEETTTTEEEEE
T ss_pred             EEeCCCeEEEEEeecCeEEEE
Confidence            999999999999998766544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.55  E-value=5.6e-14  Score=89.47  Aligned_cols=84  Identities=14%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE--cCCCCeEEE
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW--NEQYEKLTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s   87 (110)
                      ..+|.+.|.+++|+|+++.+++++.|+.+++||+....              . .....|...|.+++|  +|++..+++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------~-~~~~~~~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ--------------A-IQIAQHDAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------E-EEEEECSSCEEEEEEEECSSCEEEEE
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC--------------c-eeeccccCceEEEEEEeCCCCCEEEE
Confidence            34799999999999999999999999999999999775              2 335668899999999  899999999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||+++++.+..+
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEE
T ss_pred             ccCCCcEEEEECCCCcEEEEE
Confidence            999999999999988765443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.55  E-value=1.3e-13  Score=88.24  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcc----cccccceeeeEEeeccCCCeEEEEEcCCC
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQV----AAANVNLAMNQSLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~   82 (110)
                      +.+..+|...|.+++|+|++..+++++.|+.+++||+..........    ............+..|...+.+++|+|++
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  214 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence            34456789999999999999999999999999999975321100000    00000112456677888999999999999


Q ss_pred             CeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         83 EKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ..+++++.|+.|++||+++++.+.+
T Consensus       215 ~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          215 SRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             SEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCceeEE
Confidence            9999999999999999998876544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.54  E-value=6.6e-14  Score=96.87  Aligned_cols=83  Identities=22%  Similarity=0.325  Sum_probs=74.4

Q ss_pred             CCCCCceEEEEEecCC--CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQ--GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~--~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+|...|.+++|+|++  ..+++++.|+.|++||+....              ....+.+|...|.+++|+|++..++++
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--------------~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--------------LRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--------------EEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            3688899999999986  579999999999999998876              567788999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.|+.|++||+++++.+..
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             ETTSBCEEEETTTTEEEEC
T ss_pred             eCCCeEEEEECCCCceEEE
Confidence            9999999999998876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.54  E-value=9.8e-14  Score=89.62  Aligned_cols=77  Identities=16%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee------cc---------------CC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ------GH---------------SG   71 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~   71 (110)
                      |.+.|.+++|+|+++++++++.|+.+++||+....              ....+.      .|               ..
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  355 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE--------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEP  355 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--------------eeEEEecccCcccchhhhhccccccccccCC
Confidence            88999999999999999999999999999998875              556666      66               88


Q ss_pred             CeEEEEEcCCC----------CeEEEecCCCcEEEEeCCCCC
Q psy11100         72 KVRAIIWNEQY----------EKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        72 ~v~~~~~s~~~----------~~l~s~~~~~~i~~w~~~~~~  103 (110)
                      .|.+++|+|++          ..+++++.|+.|++|++.+|+
T Consensus       356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999999998          789999999999999998864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.54  E-value=1.3e-13  Score=86.86  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=69.4

Q ss_pred             cCCCCCceEEEEEec--CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeE
Q psy11100         10 AIPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKL   85 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l   85 (110)
                      ..+|.+.|.+++|+|  +++.|++++.|+.+++||+..+.            +.....+..|...|.+++|+|+  +..+
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l  116 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPML  116 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC------------BCCCEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc------------eEEEEEeecCCCceeEEEeCcCCCCcEE
Confidence            348999999999976  38999999999999999998653            0134556778999999999997  8899


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                      ++++.|+.|++||++++.
T Consensus       117 ~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B          117 LVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEEETTSEEEEEEBCSSS
T ss_pred             EEEECCCcEEEEEecCCC
Confidence            999999999999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.54  E-value=3e-14  Score=91.67  Aligned_cols=95  Identities=16%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCccc----ccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA----AANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      +..+|.+.|.+++|+|+++.+++++.|+.+++||+...........    ...........+ .|...|.+++|+|++..
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            3334999999999999999999999999999999864321100000    000111233444 88899999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCC
Q psy11100         85 LTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~~  104 (110)
                      +++++.|+.|++||+.++..
T Consensus       220 l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTS
T ss_pred             EEEEeCCCcEEEEECCCCCC
Confidence            99999999999999998876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.6e-13  Score=84.87  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ....+|.+.|.+++| |++..+++++.||.+++||+....              ....+..|...|.+++|+|++..+++
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~   76 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--------------LGTVVYTGQGFLNSVCYDSEKELLLF   76 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE--------------EEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--------------EEEEeecCCccEEEEEECCCCCEEEE
Confidence            344589999999999 999999999999999999998765              55677788999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCC
Q psy11100         88 SDETGLIIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~  103 (110)
                      ++.++.+++|++....
T Consensus        77 ~~~dg~i~~~~~~~~~   92 (313)
T 3odt_A           77 GGKDTMINGVPLFATS   92 (313)
T ss_dssp             EETTSCEEEEETTCCT
T ss_pred             ecCCCeEEEEEeeecC
Confidence            9999999999987653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.53  E-value=6.5e-14  Score=95.45  Aligned_cols=78  Identities=18%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC-----CeEEEEEcCCCC
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG-----KVRAIIWNEQYE   83 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~   83 (110)
                      +..+|...|.+++|+|+|..|++++.||.+++|+...                .+..+. |..     .+.+++|||+|+
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~~~~~~~~sv~svafSPDG~  142 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-SKGNLSSRTYHCFEWNPIES  142 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------EEEECC-CSSCSTTTCEEEEEECSSSS
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------eeeecc-CCCccccccEEEEEEcCCCC
Confidence            3446788999999999999999999999999999543                233444 443     599999999999


Q ss_pred             eEEEecCCCcEEEEeCCCCC
Q psy11100         84 KLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        84 ~l~s~~~~~~i~~w~~~~~~  103 (110)
                      .|++++.||+|++||+.++.
T Consensus       143 ~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          143 SIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             CEEEEETTSEEEEEECCCCT
T ss_pred             EEEEEcCCCEEEEEECCCCc
Confidence            99999999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.53  E-value=1.5e-13  Score=92.86  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcC--------
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNE--------   80 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--------   80 (110)
                      ..+|...|.+++|+|+++++++++.|+.+++|++....              ....+.. |...|.+++|+|        
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--------------VKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEECCSCCCSSCEEEEEECCCC------
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc--------------ceeEeecCCCCceeEEEEcCcccccccc
Confidence            44788999999999999999999999999999999876              5566666 899999999999        


Q ss_pred             --CCCeEEEecCCCcEEEEeCCCC-CChh
Q psy11100         81 --QYEKLTSSDETGLIIVWMLYKC-NDDD  106 (110)
Q Consensus        81 --~~~~l~s~~~~~~i~~w~~~~~-~~~~  106 (110)
                        ++..+++++.|+.|++||+.++ +.+.
T Consensus       550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  578 (615)
T 1pgu_A          550 EIEEDLVATGSLDTNIFIYSVKRPMKIIK  578 (615)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred             ccCCCEEEEEcCCCcEEEEECCCCceech
Confidence              9999999999999999999987 4443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.53  E-value=9.6e-14  Score=89.55  Aligned_cols=98  Identities=18%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             eccCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeE
Q psy11100          8 KIAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKL   85 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l   85 (110)
                      .+..+|.+.|.+++|+| +++++++++.||.+++|++............. ...........|...|.+++|+| ++..+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-VCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-EEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-cccccccccccCCCcEEEEEEccCCCcEE
Confidence            34557999999999999 99999999999999999998765110000000 00000001124889999999999 67789


Q ss_pred             EEecCCCcEEEEeCCCCCChh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      ++++.|+.|++||+.+++...
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~  136 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTAD  136 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccce
Confidence            999999999999998876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.53  E-value=8.4e-14  Score=92.02  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             cCCCCCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-eeccCCCeEEEEEcCCCCeE
Q psy11100         10 AIPNNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l   85 (110)
                      ..+|.+.|.+++|+|+   ++++++++.|+.|++||+....              .... +.+|...|.+++|+ ++..+
T Consensus       191 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--------------~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          191 ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--------------IVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--------------CEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--------------eeeeeecCCCCceEEEEEC-CCCEE
Confidence            3468899999999999   9999999999999999998765              3444 55789999999999 99999


Q ss_pred             EEecCCCcEEEEeCCCCCChhh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ++++.|+.|++||+.+++.+..
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~  277 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLST  277 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeee
Confidence            9999999999999999876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.53  E-value=3.2e-13  Score=85.58  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=71.9

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~   86 (110)
                      .+..+|.+.|.+++|+|++..+++++.|+.+++|++.....   .        ........|...|.+++|+|++. .++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~---~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~   73 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK---N--------VDLLQSLRYKHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT---E--------EEEEEEEECSSCEEEEEEEESSSEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc---c--------ccceeeeecCCceEEEEECCCCCcEEE
Confidence            45568999999999999999999999999999999986530   0        12344557889999999999999 999


Q ss_pred             EecCCCcEEEEeC-CCCC
Q psy11100         87 SSDETGLIIVWML-YKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~-~~~~  103 (110)
                      +++.++.|++||+ .++.
T Consensus        74 ~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             EEETTSCEEEECSSSSSS
T ss_pred             EEcCCCeEEEEEeccCCc
Confidence            9999999999999 7664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.53  E-value=1.2e-13  Score=88.27  Aligned_cols=81  Identities=17%  Similarity=0.357  Sum_probs=71.6

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|.++|.+++|+|+++++++++.++.+++|++....            +.....+..|...|.+++|+|++..+++++.
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence            3588999999999999999999999999999998762            1145677789999999999999999999999


Q ss_pred             CCcEEEEeCCCCC
Q psy11100         91 TGLIIVWMLYKCN  103 (110)
Q Consensus        91 ~~~i~~w~~~~~~  103 (110)
                      |+.|++||+.+++
T Consensus        73 dg~i~vwd~~~~~   85 (372)
T 1k8k_C           73 DRNAYVWTLKGRT   85 (372)
T ss_dssp             TSCEEEEEEETTE
T ss_pred             CCeEEEEECCCCe
Confidence            9999999998775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.52  E-value=8.1e-14  Score=90.02  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=72.7

Q ss_pred             CCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeec-------------cCCCeEEEE
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-------------HSGKVRAII   77 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~   77 (110)
                      ...+.+++|+|++..+++++.|   +.+++||+....              ....+..             |...|.+++
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--------------EEEEECBC--------CCBSBSSCEEEEE
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--------------ccceeccCcccccccccccccCCcEEEEE
Confidence            8999999999999999999999   999999998776              5566666             889999999


Q ss_pred             EcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      |+|++..+++++.|+.|++||+++++.+.++
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            9999999999999999999999988765544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.52  E-value=1.3e-13  Score=89.27  Aligned_cols=89  Identities=7%  Similarity=0.063  Sum_probs=72.3

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCC----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      ...+|...|.+++|+|++..+++++.++    .++.|++.....          .......+..|...|.+++|+|+|++
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------SVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------EEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee----------cceeeeeecCCCCCeEeEEECCCCCc
Confidence            3446888999999999999999998877    577888776530          01123456778899999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCChhh
Q psy11100         85 LTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        85 l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      |++++.|++|++||+++++.+.+
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~  306 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKI  306 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE
T ss_pred             eEEEcCCCEEEEEECCCCcEEEE
Confidence            99999999999999999887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.1e-13  Score=89.73  Aligned_cols=79  Identities=9%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEEec
Q psy11100         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~   89 (110)
                      +|...|.+++|+| ++.++++++.|+.+++||+....              ....+..|...|.+++|+|++ ..+++++
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE--------------QLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC--------------EEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc--------------cceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            6889999999999 89999999999999999999876              667788899999999999999 7899999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .|+.|++|++.++..
T Consensus       326 ~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          326 FDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSSEEEEEESCCCCC
T ss_pred             cCCcEEEEEccCCCC
Confidence            999999999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.52  E-value=8.2e-14  Score=87.44  Aligned_cols=76  Identities=14%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ++.+++||+++ +|++| .|++|++||+.++.              ....+  ..|...|.+++|+|+++.+++++.|+.
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~--------------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGD--------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCC--------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCC--------------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            46789999976 66665 48999999999876              44444  467788999999999999999999999


Q ss_pred             EEEEeCCCCCChhh
Q psy11100         94 IIVWMLYKCNDDDE  107 (110)
Q Consensus        94 i~~w~~~~~~~~~~  107 (110)
                      |++|++++++.+.+
T Consensus        91 v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           91 VQLWDVQQQKRLRN  104 (318)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEeecCCceeEEE
Confidence            99999998876544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.52  E-value=2.8e-13  Score=86.12  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcC-----CcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKEST-----GQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      +|...|.+++|+|++. ++++++.|+.+++||+.......     +...........+..+..|...|.+++|+|++..+
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            7899999999999988 89999999999999998654210     01111122334567788899999999999999998


Q ss_pred             E-EecCCCcEEEEeCCCCCC
Q psy11100         86 T-SSDETGLIIVWMLYKCND  104 (110)
Q Consensus        86 ~-s~~~~~~i~~w~~~~~~~  104 (110)
                      + +++.|+.|++||+.+...
T Consensus       337 ~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          337 CVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEETTSEEEEEEECC---
T ss_pred             EEEecCCCcEEEEECCCccc
Confidence            8 899999999999987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.52  E-value=1.9e-13  Score=88.21  Aligned_cols=85  Identities=21%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~   89 (110)
                      +|.+.|.+++|+|+++ .+++++.|+.+++||+......  .        .....+ .|...|.+++|+| ++..+++++
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~--------~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--N--------SYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--T--------CEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--c--------ceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            6889999999999998 8999999999999999873200  0        023333 6889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||++++....+
T Consensus       271 ~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             SSSEEEEEETTBTTSCSE
T ss_pred             CCCcEEEEECCCCccccc
Confidence            999999999998776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.52  E-value=9.7e-15  Score=93.95  Aligned_cols=80  Identities=8%  Similarity=0.083  Sum_probs=65.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .+.+.|.+++|+|+++++++++.|+.+++|++....            ......+..|...|.+++|+|++..|++++.|
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------EEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence            466789999999999999999999999999998762            01456677899999999999999999999999


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      +.|++||+.++.
T Consensus        77 ~~v~vwd~~~~~   88 (377)
T 3dwl_C           77 RNAYVYEKRPDG   88 (377)
T ss_dssp             SSEEEC------
T ss_pred             CeEEEEEcCCCC
Confidence            999999998876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.9e-13  Score=88.52  Aligned_cols=79  Identities=23%  Similarity=0.471  Sum_probs=69.4

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      |.+.|.+++|+|++.++++++.++.+++|+.. ..              ....+..|...|.+++|+|++..+++++.++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA--------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVEN  171 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC--------------EEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC--------------eeeeccCCCccEEEEEECCCCCEEEEEecCC
Confidence            67799999999999999999999999999933 33              4567788999999999999999999999999


Q ss_pred             cEEEEeCCCCCChh
Q psy11100         93 LIIVWMLYKCNDDD  106 (110)
Q Consensus        93 ~i~~w~~~~~~~~~  106 (110)
                      .|++||+.+++...
T Consensus       172 ~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          172 VTILWNVISGTVMQ  185 (425)
T ss_dssp             CEEEEETTTTEEEE
T ss_pred             eEEEEECCCCcEEE
Confidence            99999998876544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.51  E-value=1.5e-13  Score=87.27  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             cCCCCCceEEEEEec--CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeE
Q psy11100         10 AIPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKL   85 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l   85 (110)
                      ..+|.+.|.+++|+|  +++.|++++.|+.+++||+....            +.....+.+|...|.+++|+|+  +..+
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~------------~~~~~~~~~h~~~V~~v~~~p~~~g~~l  120 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT------------WEKSHEHAGHDSSVNSVCWAPHDYGLIL  120 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC------------CCEEEEECCCSSCCCEEEECCTTTCSCE
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc------------ceEEEEccCCCCceEEEEECCCCCCcEE
Confidence            348999999999975  48899999999999999998652            0134567789999999999998  7789


Q ss_pred             EEecCCCcEEEEeCCCC
Q psy11100         86 TSSDETGLIIVWMLYKC  102 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~  102 (110)
                      ++++.|+.|++||++++
T Consensus       121 asgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A          121 ACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             EEECSSSCEEEEEECSS
T ss_pred             EEEcCCCCEEEEecCCC
Confidence            99999999999998865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.51  E-value=2.4e-13  Score=85.02  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.+.+++|+|++ .+++++.|+.+++||+....              ....+..|...|.+++|+|++. +++++.|
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  286 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS--------------LKQVITLPAISIWSVDCMSNGD-IIVGSSD  286 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC--------------EEEEEECSSSCEEEEEECTTSC-EEEEETT
T ss_pred             cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc--------------eeEEEeccCceEEEEEEccCCC-EEEEeCC
Confidence            688999999999999 58899999999999999876              6677888889999999999998 5678889


Q ss_pred             CcEEEEeCCCCCChhh
Q psy11100         92 GLIIVWMLYKCNDDDE  107 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~  107 (110)
                      +.|++|++++++...+
T Consensus       287 g~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          287 NLVRIFSQEKSRWASE  302 (313)
T ss_dssp             SCEEEEESCGGGCCC-
T ss_pred             CcEEEEeCCCCceeeh
Confidence            9999999998776543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.51  E-value=5.3e-13  Score=86.08  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCccc--------cc-------------------------c
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA--------AA-------------------------N   57 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------~~-------------------------~   57 (110)
                      .+|.+.|.+++|+|+++.+++++.|+.+++||+...........        ..                         .
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~  321 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV  321 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence            46889999999999999999999999999999986532100000        00                         0


Q ss_pred             cceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         58 VNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        58 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ........+.+|...|.+++|+|++..|++++.|+.|++|++.+++.+.+
T Consensus       322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            11124566778999999999999999999999999999999998776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.50  E-value=2.8e-13  Score=85.41  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|...+.+++|+|+++.+++++.++.+++||+....              ....+..|...+.+++|+|++..+++++.
T Consensus       138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--------------LVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--------------eeeeeecccCceEEEEECCCCCEEEEEec
Confidence            3688899999999999999999999999999998876              56777889999999999999999999999


Q ss_pred             CCcEEEEeCCCCCChh
Q psy11100         91 TGLIIVWMLYKCNDDD  106 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~  106 (110)
                      ++.|++||+++++...
T Consensus       204 dg~i~~~d~~~~~~~~  219 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQ  219 (337)
T ss_dssp             TSEEEEEETTTTEEEE
T ss_pred             CCcEEEEECCCCceEe
Confidence            9999999998876543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.50  E-value=6e-14  Score=92.44  Aligned_cols=84  Identities=18%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             CCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .+|...|.+++|+|++. ++++++.|+.|++||+......           ........|...|.+++|+|+|..|++++
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-----------ASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----------SCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----------ceEEEeeeccccccceeECCCCCeeEEEc
Confidence            37899999999999875 7889999999999999875410           01223456889999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCh
Q psy11100         90 ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~  105 (110)
                      .|+.|++||+.++...
T Consensus       316 ~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          316 QKSEIRVYSASQWDCP  331 (435)
T ss_dssp             SSSCEEEEESSSSSSE
T ss_pred             CCCEEEEEECCCCccc
Confidence            9999999999887654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.6e-13  Score=88.91  Aligned_cols=84  Identities=17%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             eccCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100          8 KIAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .+..+|.+.|.+++|+| ++.++++++.|+.|++||+......  .      .......+ .|...|.+++|+|++..++
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~--~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG--E------VYSSSLTY-DCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT--C------CCSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC--c------ccceeeec-cCCCCEEEEEEeCCCCEEE
Confidence            34467999999999999 9999999999999999998762100  0      00011222 4889999999999999999


Q ss_pred             EecCCCcEEEEeCC
Q psy11100         87 SSDETGLIIVWMLY  100 (110)
Q Consensus        87 s~~~~~~i~~w~~~  100 (110)
                      +++.|+.|++||+.
T Consensus       128 s~s~dg~i~vwd~~  141 (437)
T 3gre_A          128 VSSKDGQIIVLKVN  141 (437)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEEec
Confidence            99999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.49  E-value=3.6e-13  Score=93.88  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=72.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.|.+++|+|+++++++++.|+.+++|++..+.              ....+..|...|.+++|+|++..+++++.|
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  118 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD  118 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCC
Confidence            689999999999999999999999999999999876              667788899999999999999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11100         92 GLIIVWMLYKC  102 (110)
Q Consensus        92 ~~i~~w~~~~~  102 (110)
                      +.|++||+.++
T Consensus       119 g~i~vw~~~~~  129 (814)
T 3mkq_A          119 LTVKLWNWENN  129 (814)
T ss_dssp             SEEEEEEGGGT
T ss_pred             CEEEEEECCCC
Confidence            99999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.49  E-value=3e-13  Score=85.71  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             ccCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC---------CeEEEEE
Q psy11100          9 IAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG---------KVRAIIW   78 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~   78 (110)
                      ....|...+.+++|+| ++..+++++.++.+++|++.........        .....+..|..         .|.+++|
T Consensus       188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (342)
T 1yfq_A          188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS--------SKRFAFRCHRLNLKDTNLAYPVNSIEF  259 (342)
T ss_dssp             EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC--------TTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred             eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc--------ccceeeecccccccccccceeEEEEEE
Confidence            3446888999999999 9999999999999999999865100000        03345555544         8999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         79 NEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        79 s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +|++..+++++.|+.|++||+.+++.+.++
T Consensus       260 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             cCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence            999999999999999999999988765543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.49  E-value=3e-13  Score=88.50  Aligned_cols=81  Identities=11%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-------EeeccCCCeEEEEEcCCC
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-------SLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~   82 (110)
                      ..+|...|.+++|+|+++.++++ .|+.+++||+....             ....       .+..|...|.+++|+|++
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  238 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD-------------RSFNIVDIKPANMEELTEVITAAEFHPNS  238 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE-------------EEEEEEECCCSSGGGCCCCEEEEEECSSC
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC-------------ceeeeeecccccccccCcceEEEEECCCC
Confidence            45899999999999999999998 79999999998432             0112       245788999999999998


Q ss_pred             -CeEEEecCCCcEEEEeCCCCCC
Q psy11100         83 -EKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        83 -~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                       ..+++++.|+.|++||++++..
T Consensus       239 ~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          239 CNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSS
T ss_pred             CcEEEEEeCCCeEEEEECcCCcc
Confidence             8999999999999999998775

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.4e-13  Score=98.14  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=69.6

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-----Eee-ccCCCeEEEEEc---
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-----SLQ-GHSGKVRAIIWN---   79 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~v~~~~~s---   79 (110)
                      ...+|.+.|.+++|+|+| +|++|+.|+.|++||+....              .+.     .+. +|...|.+++|+   
T Consensus       570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~--------------~~~~~~~~~~~~gh~~~V~sv~Fs~~~  634 (902)
T 2oaj_A          570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA--------------IIYMENIREISGAQSACVTCIEFVIME  634 (902)
T ss_dssp             EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE--------------EEEEEEGGGTCSSCCCCEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe--------------EEEEeehhHhccccccceEEEEEEEEe
Confidence            344699999999999999 99999999999999987654              211     232 788999999999   


Q ss_pred             --CCC---CeEEEecCCCcEEEEeC---CCCCChhh
Q psy11100         80 --EQY---EKLTSSDETGLIIVWML---YKCNDDDE  107 (110)
Q Consensus        80 --~~~---~~l~s~~~~~~i~~w~~---~~~~~~~~  107 (110)
                        |||   ..+++++.|++|++||+   .+|+...+
T Consensus       635 ~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          635 YGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             CTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred             cCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence              886   78999999999999998   67765443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.49  E-value=4e-13  Score=87.96  Aligned_cols=86  Identities=8%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC------------CeEEEE
Q psy11100         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG------------KVRAII   77 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~   77 (110)
                      .+|...|.+++|+|++ ..+++++.|+.+++||+........          ....+..|..            .|.+++
T Consensus       223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (447)
T 3dw8_B          223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR----------HSKLFEEPEDPSNRSFFSEIISSISDVK  292 (447)
T ss_dssp             GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT----------TCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred             cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc----------eeeEeccCCCccccccccccCceEEEEE
Confidence            3789999999999998 9999999999999999987650000          0344555554            899999


Q ss_pred             EcCCCCeEEEecCCCcEEEEeCCC-CCChhh
Q psy11100         78 WNEQYEKLTSSDETGLIIVWMLYK-CNDDDE  107 (110)
Q Consensus        78 ~s~~~~~l~s~~~~~~i~~w~~~~-~~~~~~  107 (110)
                      |+|++..+++++. +.|++||+++ ++.+..
T Consensus       293 ~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          293 FSHSGRYMMTRDY-LSVKVWDLNMENRPVET  322 (447)
T ss_dssp             ECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred             ECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence            9999999999998 9999999987 654433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.49  E-value=2.6e-13  Score=91.67  Aligned_cols=76  Identities=20%  Similarity=0.410  Sum_probs=68.1

Q ss_pred             CCCceEEEEEec----------CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC
Q psy11100         13 NNTKVNCLAWHQ----------NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus        13 h~~~v~~~~~~p----------~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~   82 (110)
                      |...|.+++|+|          +++++++++.|+.|++|++....             .....+.+|...|.+++|+|++
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~h~~~v~~l~~s~~~  596 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-------------KIIKALNAHKDGVNNLLWETPS  596 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-------------CCEEETTSSTTCEEEEEEEETT
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-------------eechhhhcCccceEEEEEcCCC
Confidence            999999999999          99999999999999999998862             1456778899999999999999


Q ss_pred             CeEEEecCCCcEEEEeCCCC
Q psy11100         83 EKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~  102 (110)
                      . +++++.|+.|++|++..+
T Consensus       597 ~-l~s~~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          597 T-LVSSGADACIKRWNVVLE  615 (615)
T ss_dssp             E-EEEEETTSCEEEEEEC--
T ss_pred             C-eEEecCCceEEEEeeecC
Confidence            9 999999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.1e-13  Score=96.94  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=70.7

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~   86 (110)
                      +..+|.+.|.+++|+|+++++++|+.||.|++|++....            ......+.+|.+.|.+++|+|+  +..++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence            456899999999999999999999999999999998442            1255678889999999999988  89999


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      +++.||.|++||+.+++
T Consensus        72 s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             EEETTSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEECCCCc
Confidence            99999999999998875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.1e-13  Score=92.17  Aligned_cols=80  Identities=21%  Similarity=0.437  Sum_probs=63.7

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe----eccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL----QGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .+.+++|+|||++|++|+.||.|++|++..+...+.      . +-.+.++    .+|.+.|.+++|+|+|  +++++.|
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~------~-~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D  201 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP------E-FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN  201 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC------C-CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc------c-ceeeeeeecccccccccEEEEEEcCCc--EEEEeCC
Confidence            599999999999999999999999999987630000      0 0023444    5577899999999999  7888889


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      +++++|++.++..
T Consensus       202 ~tVrlWd~~~~~~  214 (588)
T 2j04_A          202 NSVFSMTVSASSH  214 (588)
T ss_dssp             CCEEEECCCSSSS
T ss_pred             CeEEEEECCCCcc
Confidence            9999999987763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.48  E-value=5.7e-13  Score=86.17  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe-EEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV-RAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~   89 (110)
                      .+|.+.+.+..+  ++.++++++.|++|++||+..+.              .+.++.+|...+ ..++|+|+|+.|++++
T Consensus       282 ~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk--------------~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          282 PGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ--------------CTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS--------------EEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCc--------------EEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            355555433333  36688999999999999999987              778888887765 4689999999999999


Q ss_pred             CCCcEEEEeCC
Q psy11100         90 ETGLIIVWMLY  100 (110)
Q Consensus        90 ~~~~i~~w~~~  100 (110)
                      .|++|++||+.
T Consensus       346 ~D~TIklWd~~  356 (356)
T 2w18_A          346 KDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEecCC
Confidence            99999999963

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.48  E-value=1.2e-12  Score=84.55  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=68.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~   90 (110)
                      +|...|.+++|+|+++.+++++.|+.+++||+. ..              ....+..|...|.+++|+|++. .+++++.
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------EEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------EEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence            355789999999999999999999999999995 33              4677888999999999999999 8999999


Q ss_pred             CCcEEEEeCCCC
Q psy11100         91 TGLIIVWMLYKC  102 (110)
Q Consensus        91 ~~~i~~w~~~~~  102 (110)
                      |+.|++||++++
T Consensus       226 d~~i~iwd~~~~  237 (383)
T 3ei3_B          226 DATVKLWDLRNI  237 (383)
T ss_dssp             TSEEEEEEGGGC
T ss_pred             CCEEEEEeCCCC
Confidence            999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.1e-13  Score=87.66  Aligned_cols=83  Identities=25%  Similarity=0.483  Sum_probs=71.1

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~   89 (110)
                      ..|.+.|.+++|+|++.++++++.|+.+++|++.....          .......+..|...|.+++|+|+ +..+++++
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  133 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN----------AINSMARFSNHSSSVKTVKFNAKQDNVLASGG  133 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS----------CCCEEEECCCSSSCCCEEEECSSSTTBEEEEC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc----------cccchhhccCCccceEEEEEcCCCCCEEEEEc
Confidence            36888999999999999999999999999999987210          00145677889999999999998 88899999


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .|+.|++||+.++.
T Consensus       134 ~dg~v~iwd~~~~~  147 (416)
T 2pm9_A          134 NNGEIFIWDMNKCT  147 (416)
T ss_dssp             SSSCEEBCBTTTTS
T ss_pred             CCCeEEEEECCCCc
Confidence            99999999998876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.46  E-value=1.3e-12  Score=82.28  Aligned_cols=84  Identities=15%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...+.+++|+|+++.+++++.++.+++|++....            ......+..|...+.+++|+|++..+++++.+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC------------cceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            688999999999999999999999999999998754            01345667788999999999999999999999


Q ss_pred             CcEEEEeCCCCCChhh
Q psy11100         92 GLIIVWMLYKCNDDDE  107 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~  107 (110)
                      +.|++||+++++....
T Consensus       163 g~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             SCEEEEETTTTEEEEE
T ss_pred             CcEEEEeCCCCceeee
Confidence            9999999998765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.46  E-value=9.1e-13  Score=83.86  Aligned_cols=79  Identities=10%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      .+.+++|+|+++.+++++.++.+++||+....             .....+..|...|.+++|+|++..+++++.|+.|+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  243 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF  243 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTT-------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-------------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence            89999999999999999999999999998732             15677788999999999999999999999999999


Q ss_pred             EEeCCCCCChhh
Q psy11100         96 VWMLYKCNDDDE  107 (110)
Q Consensus        96 ~w~~~~~~~~~~  107 (110)
                      +||+++++....
T Consensus       244 v~d~~~~~~~~~  255 (369)
T 3zwl_B          244 LVDVSTLQVLKK  255 (369)
T ss_dssp             EEETTTCCEEEE
T ss_pred             EEECCCCceeee
Confidence            999998776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.45  E-value=7.7e-13  Score=86.21  Aligned_cols=83  Identities=18%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      .+|.+.|.+++|+|++..+++++.|+.+++||+....              ....+..|...|.+++|+|++.. +++++
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------------PKFTKTNHNAAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------------EEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------------ccEEecCCcceEEEEEECCCCCCEEEEec
Confidence            3789999999999999999999999999999999876              56677889999999999998765 66654


Q ss_pred             --CCCcEEEEeCCCCCChhh
Q psy11100         90 --ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 --~~~~i~~w~~~~~~~~~~  107 (110)
                        .|+.|++||+.+++.+..
T Consensus       280 gs~d~~i~i~d~~~~~~~~~  299 (401)
T 4aez_A          280 GTMDKQIHFWNAATGARVNT  299 (401)
T ss_dssp             CTTTCEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEE
Confidence              699999999998876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.45  E-value=7.3e-13  Score=84.19  Aligned_cols=83  Identities=14%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             eccCCCCCceEEEEEecCCCE-EEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGW-IAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--   81 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~-l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--   81 (110)
                      .+..+|.+.|.+++|+|++.. +++++.   |+.+++|++....             ........|...|.+++|+|+  
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~   78 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------------LKLLREIEKAKPIKCGTFGATSL   78 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------------EEEEEEEEESSCEEEEECTTCCT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------------ccceeeecccCcEEEEEEcCCCC
Confidence            445579999999999999864 566665   8999999999765             011223368899999999998  


Q ss_pred             -CCeEEEecCCCcEEEEeCCCCC
Q psy11100         82 -YEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        82 -~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                       +..+++++.|+.|++||+.++.
T Consensus        79 ~~~~l~~~~~dg~i~iwd~~~~~  101 (357)
T 3i2n_A           79 QQRYLATGDFGGNLHIWNLEAPE  101 (357)
T ss_dssp             TTCCEEEEETTSCEEEECTTSCS
T ss_pred             CCceEEEecCCCeEEEEeCCCCC
Confidence             6889999999999999999876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3e-13  Score=91.65  Aligned_cols=80  Identities=8%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEE--EEcCCC-CeEEE
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI--IWNEQY-EKLTS   87 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~s   87 (110)
                      .+|.+.|.+++|+|++ .|++|+.||.|++||+....             .....+..|...|.++  +|+|++ ..|++
T Consensus       263 ~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          263 SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-------------VPSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-------------SCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-------------CceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence            4688999999999864 79999999999999998653             0345678899999999  578887 88999


Q ss_pred             ecCCCcEEEEeCCCCCC
Q psy11100         88 SDETGLIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~  104 (110)
                      ++.|++|++||+++++.
T Consensus       329 ~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EETTSEEEEECGGGHHH
T ss_pred             eccCCeEEEEECCCCCc
Confidence            99999999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.1e-12  Score=81.78  Aligned_cols=83  Identities=24%  Similarity=0.450  Sum_probs=70.7

Q ss_pred             CCCCCceEEEEEec-------------CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEE
Q psy11100         11 IPNNTKVNCLAWHQ-------------NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII   77 (110)
Q Consensus        11 ~~h~~~v~~~~~~p-------------~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   77 (110)
                      .+|...|.+++|+|             ++..+++++.|+.+++||+....          ........+..|...|.+++
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT----------TEEEEEEEECCCSSCEEEEE
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC----------cceeeEEEEecccCcEeEEE
Confidence            37889999999999             68999999999999999998653          01123456778999999999


Q ss_pred             EcCC---CCeEEEecCCCcEEEEeCCCCC
Q psy11100         78 WNEQ---YEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        78 ~s~~---~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                      |+|+   +..+++++.|+.|++||+.++.
T Consensus       214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          214 WSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            9999   8889999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.44  E-value=1.6e-12  Score=94.31  Aligned_cols=82  Identities=20%  Similarity=0.340  Sum_probs=73.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~   89 (110)
                      +|.+.|.+++|+|+++++++++.|+.+++||+..+.              ....+..|...|.+++|+|+  +..+++++
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~  720 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGS  720 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--------------eEEEEcCCCCcEEEEEEecCCCceEEEEEe
Confidence            799999999999999999999999999999999876              67788899999999999994  55799999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .|+.|++||+.++.....
T Consensus       721 ~d~~v~vwd~~~~~~~~~  738 (1249)
T 3sfz_A          721 NDFFLKLWDLNQKECRNT  738 (1249)
T ss_dssp             TTSCEEEEETTSSSEEEE
T ss_pred             CCCeEEEEECCCcchhhe
Confidence            999999999998875543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.43  E-value=1.4e-12  Score=84.87  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ..+....++|+++.+++++.|+.+++||+....              ....+..|...|.+++|+|++..+++++.|+.|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i  163 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQL  163 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--------------eeeecccccCccEEEEECCCCCEEEEEeCCCeE
Confidence            445556789999999999999999999998765              455667899999999999999999999999999


Q ss_pred             EEEeCCCCCChhhh
Q psy11100         95 IVWMLYKCNDDDEW  108 (110)
Q Consensus        95 ~~w~~~~~~~~~~~  108 (110)
                      ++||+.+++...++
T Consensus       164 ~iwd~~~~~~~~~~  177 (420)
T 3vl1_A          164 KIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEETTTCCCCEEE
T ss_pred             EEEeCCCCcCceEE
Confidence            99999988766544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.3e-12  Score=84.53  Aligned_cols=81  Identities=19%  Similarity=0.334  Sum_probs=72.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...|.+++|+|+++.+++++.++.+++||+....              ....+..|...+.+++|+|++ .+++++.+
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d  309 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--------------SQNCFYGHSQSIVSASWVGDD-KVISCSMD  309 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS--------------CSEEECCCSSCEEEEEEETTT-EEEEEETT
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--------------cceEecCCCccEEEEEECCCC-EEEEEeCC
Confidence            688999999999999999999999999999998765              456677889999999999999 99999999


Q ss_pred             CcEEEEeCCCCCChhh
Q psy11100         92 GLIIVWMLYKCNDDDE  107 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~  107 (110)
                      +.|++||+.+++.+..
T Consensus       310 ~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          310 GSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             SEEEEEETTTTEEEEE
T ss_pred             CcEEEEECCCCcEeEe
Confidence            9999999988765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.43  E-value=3.2e-12  Score=84.31  Aligned_cols=80  Identities=18%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc--CCCCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN--EQYEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~   88 (110)
                      .+|.+.|.+++|+|++ .+++++.|+.+++||+..+.              ....+..|...|.+++|+  +++..++++
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~  223 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC--------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTG  223 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc--------------EEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence            3799999999999988 89999999999999999876              667788899999999998  567889999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|+.|++||++++...
T Consensus       224 s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          224 SRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             ETTSCEEEEECCCCCCC
T ss_pred             cCCCcEEEeeCCCCccc
Confidence            99999999999887643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2e-12  Score=84.74  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             CCCceEEEE--EecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEe
Q psy11100         13 NNTKVNCLA--WHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        13 h~~~v~~~~--~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~   88 (110)
                      +...+.++.  ++|++..+++++.|+.+++||+....              ....+..  |...|.+++|+|++..++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  232 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--------------RLQIIENSPRHGAVSSICIDEECCVLILG  232 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--------------EEEEEECCGGGCCEEEEEECTTSCEEEEE
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--------------eeEEEccCCCCCceEEEEECCCCCEEEEE
Confidence            567777777  56789999999999999999999876              5667776  88999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||++++..+.++
T Consensus       233 ~~dg~i~iwd~~~~~~~~~~  252 (437)
T 3gre_A          233 TTRGIIDIWDIRFNVLIRSW  252 (437)
T ss_dssp             ETTSCEEEEETTTTEEEEEE
T ss_pred             cCCCeEEEEEcCCccEEEEE
Confidence            99999999999987765543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.42  E-value=4.9e-13  Score=90.62  Aligned_cols=73  Identities=8%  Similarity=0.003  Sum_probs=65.7

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      .|.+++|+|+++.+++++.|+.+++||+....              ....+.+|.+.|.+++|+|+|+.+++++.|++|+
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--------------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--------------AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTT--------------CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccc--------------cceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence            47889999999999999999999999998865              4566778999999999999999999999999999


Q ss_pred             EEeCCCC
Q psy11100         96 VWMLYKC  102 (110)
Q Consensus        96 ~w~~~~~  102 (110)
                      +||+..+
T Consensus       423 lwd~~~~  429 (524)
T 2j04_B          423 ITNAARR  429 (524)
T ss_dssp             CCBSCSS
T ss_pred             EEechHh
Confidence            9998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.41  E-value=5.5e-12  Score=83.23  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=71.1

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|...|.+++|+|+++.+++++.|+.+++||+..+.              ....+..|...|.+++|+  +..+++++.
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------------LMYTLQGHTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEEC--SSEEEEEET
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEEeCCCCcEEEEEEc--CCEEEEEeC
Confidence            3689999999999999999999999999999999876              677888999999999997  578999999


Q ss_pred             CCcEEEEeCCCCCCh
Q psy11100         91 TGLIIVWMLYKCNDD  105 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~  105 (110)
                      |+.|++||+.++...
T Consensus       371 dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          371 DGSIRGWDANDYSRK  385 (464)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCcee
Confidence            999999999886543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.41  E-value=7e-12  Score=82.55  Aligned_cols=82  Identities=17%  Similarity=0.305  Sum_probs=69.0

Q ss_pred             cCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100         10 AIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      ..+|.+.|.+++|+| ++..+++++.++.|++||+.....           ......+..|...|.+++|+|++. .+++
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-----------SSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-----------CcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence            347999999999999 678899999999999999986520           013456678899999999999988 5889


Q ss_pred             ecCCCcEEEEeCCCC
Q psy11100         88 SDETGLIIVWMLYKC  102 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~  102 (110)
                      ++.|+.|++||+++.
T Consensus       296 g~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          296 GSADKTVALWDLRNL  310 (430)
T ss_dssp             EETTSEEEEEETTCT
T ss_pred             EeCCCeEEEEeCCCC
Confidence            999999999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.40  E-value=4.7e-12  Score=83.36  Aligned_cols=77  Identities=26%  Similarity=0.438  Sum_probs=68.0

Q ss_pred             CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEec
Q psy11100         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~   89 (110)
                      .|.+.|.+++|+|++. .+++++.|+.|++||+....             ..+..+..|...|.+++|+|++. ++++++
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence            7889999999999987 78999999999999998743             14567788999999999999986 589999


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      .|+.|++||+.+
T Consensus       342 ~d~~i~iwd~~~  353 (430)
T 2xyi_A          342 TDRRLHVWDLSK  353 (430)
T ss_dssp             TTSCCEEEEGGG
T ss_pred             CCCcEEEEeCCC
Confidence            999999999987

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.39  E-value=6.6e-12  Score=82.95  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=67.8

Q ss_pred             CCCCceEEEEEecCCCEE-EEEecCCcEEEEEcC--CCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLD--TGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~   86 (110)
                      +|.+.|.+++|+|+++.| ++++.|+.+++|++.  .+.              ....+.  .+...|.+++|+|++..++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~~~~~~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--------------VLKLRKRFCFSKRPNAISIAEDDTTVI  165 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--------------CEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--------------eeeeeecccCCCCceEEEEcCCCCEEE
Confidence            566789999999999986 899999999999998  554              334444  4568899999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCh
Q psy11100         87 SSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~  105 (110)
                      +++.++.+++|++.++...
T Consensus       166 ~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEETTSEEEEEETTSCCCS
T ss_pred             EEeCCCcEEEEecCCcccc
Confidence            9999999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.38  E-value=9.4e-13  Score=87.30  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CCCCceEEEEEecCCCEEE----EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIA----VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~   86 (110)
                      ++.+.|.+++|+|+|++|+    +++.|+.+++||+........   .....+.....+.+|...|.+++|+|+ +..++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  166 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA  166 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc---CCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence            4567799999999999998    788899999999865310000   000011123455678999999999998 78899


Q ss_pred             EecCCCcEEEEeCCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCND  104 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~  104 (110)
                      +++.|++|++||++++..
T Consensus       167 s~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             EEETTSCEEEEEESSSEE
T ss_pred             EEECCCeEEEEEcCCCcc
Confidence            999999999999988743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.38  E-value=1.6e-11  Score=80.03  Aligned_cols=77  Identities=19%  Similarity=0.445  Sum_probs=68.6

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ...|.+.|.+++|+|++..+++++.||.+++||+....              ....+..|...|.+++|  ++..+++++
T Consensus       130 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT--------------KLRTMAGHQARVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe--------------EEEEecCCCCceEEEEE--CCCEEEEEc
Confidence            33588999999999999999999999999999998876              56778899999999999  457899999


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .|+.|.+||++..
T Consensus       194 ~dg~i~i~d~~~~  206 (401)
T 4aez_A          194 RSGAIHHHDVRIA  206 (401)
T ss_dssp             TTSEEEEEETTSS
T ss_pred             CCCCEEEEecccC
Confidence            9999999999843

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.38  E-value=1.1e-11  Score=81.31  Aligned_cols=76  Identities=18%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...|++++|+|+|+++++|+.|+.|++||+....              .+..+.+|...+.+++|  ++..+++++.|
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--------------~~~~~~~h~~~v~~~s~--~~~~l~sgs~d  208 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--------------RLRNMTSHSARVGSLSW--NSYILSSGSRS  208 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--------------EEEEEeCCCCceEEEee--CCCEEEEEeCC
Confidence            577889999999999999999999999999999876              67788899999988877  46789999999


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      +.+.+||.....
T Consensus       209 ~~i~~~d~~~~~  220 (420)
T 4gga_A          209 GHIHHHDVRVAE  220 (420)
T ss_dssp             SEEEEEETTSSS
T ss_pred             CceeEeeecccc
Confidence            999999987644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.37  E-value=9.4e-12  Score=87.18  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             cCCCCCceEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeE
Q psy11100         10 AIPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKL   85 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l   85 (110)
                      ..+|.+.|.+++|+|+  ++.+++++.||.|++||+....            ......+..|...|.+++|+|+  +..+
T Consensus        49 l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc------------ccccccccCCCCCeEEEEECCCCCCCEE
Confidence            3479999999999988  9999999999999999998763            1135566779999999999999  9999


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                      ++++.|+.|++||++++.
T Consensus       117 ~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEETTSEEEEEECCSSS
T ss_pred             EEEeCCCcEEEEEeecCC
Confidence            999999999999998773

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.35  E-value=5e-12  Score=81.81  Aligned_cols=80  Identities=11%  Similarity=-0.024  Sum_probs=61.3

Q ss_pred             CCCCceEEEEEec---CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC---CCeEEEEEcCCCCeE
Q psy11100         12 PNNTKVNCLAWHQ---NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS---GKVRAIIWNEQYEKL   85 (110)
Q Consensus        12 ~h~~~v~~~~~~p---~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l   85 (110)
                      .|...+..++|+|   ++..+++++.|++|++||+.++.              .+.++.+|.   ..+.+++|+|+|..+
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--------------~l~tL~g~~~~v~~v~~vafSpdG~~l  241 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--------------LLKKMHIDDSYQASVCHKAYSEMGLLF  241 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--------------EEEEEECCC---CCCEEEEEEETTEEE
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--------------EEEEEcCCCcceeeeEEEEECCCCCEE
Confidence            4666677777777   56889999999999999999887              667776543   467788999999876


Q ss_pred             ------------EEecCCCcEEEEeCCCCCCh
Q psy11100         86 ------------TSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        86 ------------~s~~~~~~i~~w~~~~~~~~  105 (110)
                                  ++++.|+++++||+.+++.+
T Consensus       242 vs~s~~~~~w~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          242 IVLSHPCAKESESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             EEEC------------CCEEEEEEETTTTEEE
T ss_pred             EEeccCCCcceeeccCCCcEEEEEECCCCEEE
Confidence                        56778999999999887643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.31  E-value=5.8e-13  Score=86.90  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=59.1

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--------CCCeEEEe
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--------QYEKLTSS   88 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~~~~l~s~   88 (110)
                      .....+++++..+++++.|+++++||......    .     ....+..+.+|.+.|++++|+|        +++.|+++
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~----~-----~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI----I-----TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEE----E-----EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCcc----c-----eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            33344455677899999999999999987640    0     0012334678999999999998        78899999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|++|++||++++...
T Consensus       163 s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             ETTSEEEEEEEETTEEE
T ss_pred             ECCCeEEEEECCCCcee
Confidence            99999999999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.31  E-value=2.6e-11  Score=79.78  Aligned_cols=79  Identities=19%  Similarity=0.331  Sum_probs=67.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...|.++++  +++.+++|+.|+.+++||.....              ....+.+|...|.+++|  ++..+++++.|
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~l~~--~~~~l~sg~~d  192 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--------------CKRILTGHTGSVLCLQY--DERVIITGSSD  192 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--------------EEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe--------------EEEEEcCCCCcEEEEEE--CCCEEEEEcCC
Confidence            45667887765  89999999999999999998876              66778889999999988  78899999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      +.|++||+.+++.+.++
T Consensus       193 g~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          193 STVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             SCEEEEESSSCCEEEEE
T ss_pred             CeEEEEECCCCcEEEEE
Confidence            99999999988765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.28  E-value=3.2e-11  Score=79.41  Aligned_cols=82  Identities=23%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|.+.+.. +++++|+.+++|+.|+.+++||+..+.              ....+.+|...|.+++|+  +..++++
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~--~~~l~s~  175 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK--------------CLRTLVGHTGGVWSSQMR--DNIIISG  175 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC--------------EEEECCCCSSCEEEEEEE--TTEEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc--------------EEEEEcCCCCCEEEEEec--CCEEEEE
Confidence            34478887543 356679999999999999999998876              567778888899999886  5688899


Q ss_pred             cCCCcEEEEeCCCCCChhh
Q psy11100         89 DETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~  107 (110)
                      +.|+.|++||+.+++.+.+
T Consensus       176 ~~dg~i~vwd~~~~~~~~~  194 (445)
T 2ovr_B          176 STDRTLKVWNAETGECIHT  194 (445)
T ss_dssp             ETTSCEEEEETTTTEEEEE
T ss_pred             eCCCeEEEEECCcCcEEEE
Confidence            9999999999888765443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.26  E-value=8.4e-11  Score=77.33  Aligned_cols=83  Identities=16%  Similarity=0.281  Sum_probs=70.3

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ....+|.+.|.++++  ++..+++++.|+.+++||+....              ....+..|...|.+++|  ++..+++
T Consensus       250 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~--------------~~~~~~~~~~~v~~~~~--~~~~l~~  311 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE--------------FVRTLNGHKRGIACLQY--RDRLVVS  311 (435)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEE--ETTEEEE
T ss_pred             eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc--------------EEEEEcCCCCcEEEEEe--CCCEEEE
Confidence            344578899999988  78899999999999999999876              66778889999999988  4678999


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|+.|++||++++..+.++
T Consensus       312 g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          312 GSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EETTSCEEEEETTTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEE
Confidence            999999999999988765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.25  E-value=7.1e-11  Score=77.13  Aligned_cols=81  Identities=9%  Similarity=-0.037  Sum_probs=70.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~   90 (110)
                      +|.+.+.+++|+|++..+++++.++.+++||+....              ....+..|...+.+++|+|++..+ +++..
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--------------YKATVDLTGKWSKILLYDPIRDLVYCSNWI  232 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--------------EEEEEECSSSSEEEEEEETTTTEEEEEETT
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecC
Confidence            688899999999999999999999999999998776              556677788899999999999986 56667


Q ss_pred             CCcEEEEeCCCCCChh
Q psy11100         91 TGLIIVWMLYKCNDDD  106 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~  106 (110)
                      ++.|.+||+++++...
T Consensus       233 ~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          233 SEDISVIDRKTKLEIR  248 (433)
T ss_dssp             TTEEEEEETTTTEEEE
T ss_pred             CCcEEEEECCCCcEEE
Confidence            9999999998876544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.22  E-value=9.8e-11  Score=75.47  Aligned_cols=47  Identities=13%  Similarity=0.234  Sum_probs=42.0

Q ss_pred             eEEeeccCCCeEEEEEcCCCCeEEEecCCCc-EEEEeCCCCCChhhhh
Q psy11100         63 NQSLQGHSGKVRAIIWNEQYEKLTSSDETGL-IIVWMLYKCNDDDEWK  109 (110)
Q Consensus        63 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~-i~~w~~~~~~~~~~~~  109 (110)
                      ...+.+|...|.+++|+|++..+++++.|++ |++||+++++.+.+++
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~  235 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR  235 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            4677899999999999999999999999998 9999999988766553

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.21  E-value=3.6e-10  Score=74.36  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCC---cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s   87 (110)
                      +|.+.+.+++|+|+|+.+++++.++   .+++||+..+.              . ..+..+...+.+++|+|+|+.++ +
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------------~-~~l~~~~~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------------V-RQVASFPRHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------E-EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------------E-EEeecCCCcccCEEEcCCCCEEEEE
Confidence            5778999999999999999998775   89999998775              2 34566778899999999999877 6


Q ss_pred             ecCCC--cEEEEeCCCCCC
Q psy11100         88 SDETG--LIIVWMLYKCND  104 (110)
Q Consensus        88 ~~~~~--~i~~w~~~~~~~  104 (110)
                      ++.++  .|++||+.+++.
T Consensus       241 ~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCE
T ss_pred             EecCCCceEEEEECCCCCE
Confidence            65554  499999987754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.18  E-value=2.9e-10  Score=74.84  Aligned_cols=77  Identities=22%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.+.++++  ++..+++++.|+.+++||+....              ....+..|...|.+++|  ++..+++++.|
T Consensus       237 ~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  298 (445)
T 2ovr_B          237 GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--------------CLHTLQGHTNRVYSLQF--DGIHVVSGSLD  298 (445)
T ss_dssp             CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--------------EEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred             CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--------------EeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence            34555555544  44455555555555555554443              44556667777777777  66677777777


Q ss_pred             CcEEEEeCCCCCChh
Q psy11100         92 GLIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~  106 (110)
                      +.|++||+++++.+.
T Consensus       299 ~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          299 TSIRVWDVETGNCIH  313 (445)
T ss_dssp             SCEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCCEEE
Confidence            777777777665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.11  E-value=9.5e-10  Score=70.94  Aligned_cols=79  Identities=4%  Similarity=-0.012  Sum_probs=63.0

Q ss_pred             CCCceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecC
Q psy11100         13 NNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~   90 (110)
                      +...+.+++|+|+++.+ ++++.++.+++||+..+.              ....+..+. .+.+++|+|+++.+ +++..
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~   94 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------VIATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------EEEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------EEEEEECCC-CccceEECCCCCEEEEEECC
Confidence            33568999999999876 677789999999998775              445555443 89999999999986 45567


Q ss_pred             CCcEEEEeCCCCCChh
Q psy11100         91 TGLIIVWMLYKCNDDD  106 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~  106 (110)
                      ++.|.+||+.+++...
T Consensus        95 ~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           95 SSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             TTEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCeEEE
Confidence            7999999999876544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.04  E-value=2e-09  Score=77.72  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=66.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...+..++|+|+|+.+++++.++.+++||+..+.              .......|...+..++|||+|+.++.++.+
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~--------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc--------------eEEeccCCCCCccceEECCCCCeEEEEecC
Confidence            677889999999999999999999999999998776              344455788888999999999998877654


Q ss_pred             ----------CcEEEEeCCCCC
Q psy11100         92 ----------GLIIVWMLYKCN  103 (110)
Q Consensus        92 ----------~~i~~w~~~~~~  103 (110)
                                +.|++||+.+++
T Consensus       442 ~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTE
T ss_pred             ccccccCCCCCeEEEEECCCCc
Confidence                      489999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.04  E-value=3.7e-09  Score=68.15  Aligned_cols=80  Identities=9%  Similarity=-0.077  Sum_probs=64.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEe---cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGG---DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s   87 (110)
                      .+...+.+++|+|+++.+++++   .++.+++||+....              ....+..+ ..+.+++|+|+++.+ ++
T Consensus       197 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--------------~~~~~~~~-~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------------ITARIPVG-PDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------------EEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred             ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--------------EEEEEecC-CCccEEEEccCCCEEEEE
Confidence            3556788999999999888877   68999999998765              44555554 357899999999876 67


Q ss_pred             ecCCCcEEEEeCCCCCChh
Q psy11100         88 SDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~  106 (110)
                      ++.++.|++||+.+++.+.
T Consensus       262 ~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          262 LSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEEECCCCcEEE
Confidence            7889999999999876544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.00  E-value=1.2e-08  Score=67.08  Aligned_cols=78  Identities=13%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             CCCCceEEEEEecCCCEEE-EEecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIA-VGGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .|.+.+.+++|+|+|+.|+ +++.++.  |++||+....               ...+..|...+..++|+|+|+.++.+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------------EEECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---------------EEeCcCCCCcccceEECCCCCEEEEE
Confidence            5677899999999999877 6665554  8899988765               24566677889999999999987776


Q ss_pred             cC-CC--cEEEEeCCCCCC
Q psy11100         89 DE-TG--LIIVWMLYKCND  104 (110)
Q Consensus        89 ~~-~~--~i~~w~~~~~~~  104 (110)
                      +. ++  .|.+||+.++..
T Consensus       285 s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCC
T ss_pred             ECCCCCcEEEEEECCCCCE
Confidence            64 44  677889887653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.98  E-value=6e-10  Score=72.75  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=64.7

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-----EeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-----SLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+.+++|+|++.++++++.++.+++||...+.              ...     .+..|...|.+++|++++..+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  188 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--------------TVRLSPPEKYKKKLGFVETISIPEHNELWVSQM  188 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--------------EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--------------EeeecCcccccccCCceeEEEEcCCCEEEEEEC
Confidence            446689999977778888888999999998765              222     2346778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCChhh
Q psy11100         90 ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~  107 (110)
                      .++.|++||+.+++...+
T Consensus       189 ~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             GGTEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCceEEEE
Confidence            999999999988766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.92  E-value=7.8e-09  Score=70.28  Aligned_cols=72  Identities=10%  Similarity=-0.068  Sum_probs=60.2

Q ss_pred             EEEEEecCCCEEEEEecC----CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC-
Q psy11100         18 NCLAWHQNQGWIAVGGDD----GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG-   92 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~-   92 (110)
                      .+++|+|||+.+++++.+    +.+++||+..+.               ...+..+...+..++|||||+.++++..++ 
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---------------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---------------LRVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---------------CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---------------ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence            678999999999977766    679999988765               245667778889999999999999888888 


Q ss_pred             -cEEEEeCCCCCC
Q psy11100         93 -LIIVWMLYKCND  104 (110)
Q Consensus        93 -~i~~w~~~~~~~  104 (110)
                       .|++||+.++..
T Consensus       218 ~~i~~~d~~~~~~  230 (582)
T 3o4h_A          218 ARLVTVDPRDGSV  230 (582)
T ss_dssp             EEEEEECTTTCCE
T ss_pred             eEEEEEcCCCCcE
Confidence             899999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.90  E-value=2.5e-08  Score=67.94  Aligned_cols=75  Identities=8%  Similarity=0.027  Sum_probs=61.5

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEc--CCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC----CCCeEEEec-
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKL--DTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE----QYEKLTSSD-   89 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~-   89 (110)
                      +..++|+|+|+++++++.++.|.+||+  .+..              ....+. +...+..++|+|    +|+.+++++ 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--------------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--------------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--------------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--------------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            788999999999999999999999999  5544              445555 345678999999    999988877 


Q ss_pred             CCCcEEEEeCCCCCChh
Q psy11100         90 ETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~  106 (110)
                      .+++|.+||..+++.+.
T Consensus       246 ~~~~v~v~D~~t~~~~~  262 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQ  262 (543)
T ss_dssp             ESSEEEEEETTTCCEEE
T ss_pred             cCCeEEEEeccccccce
Confidence            48999999988876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.87  E-value=1.9e-08  Score=63.28  Aligned_cols=79  Identities=5%  Similarity=-0.073  Sum_probs=61.7

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +...+..++|+|+|+.++++  ++.+.+||+....              ....+.. ...+..++|+|+++.++.++.++
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--------------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--------------SIKRVPL-PHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--------------EEEEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--------------CcceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence            34567789999999988887  6899999998765              3333332 24567899999999888788899


Q ss_pred             cEEEEeCCCCCChhhh
Q psy11100         93 LIIVWMLYKCNDDDEW  108 (110)
Q Consensus        93 ~i~~w~~~~~~~~~~~  108 (110)
                      .|.+||+.+++.+.++
T Consensus       302 ~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          302 DLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             cEEEEECcCCcEEEEE
Confidence            9999999988765543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.85  E-value=1.9e-08  Score=69.86  Aligned_cols=73  Identities=10%  Similarity=0.093  Sum_probs=57.9

Q ss_pred             CceEEEEEecCCCEEEEEec-CC-----cEEEEEcCCCCCcCCcccccccceeeeEEeeccC------------------
Q psy11100         15 TKVNCLAWHQNQGWIAVGGD-DG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS------------------   70 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------   70 (110)
                      ..+..++|+|||+.|++++. ++     .+++||+..+.              .......+.                  
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--------------TRLLVDSKVVLPGTETLSDEEKARRER  102 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--------------EEEEECGGGTC----------------
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--------------eeEccchhhcccccccccchhhhhhhh
Confidence            46889999999999999887 87     89999998765              222222221                  


Q ss_pred             ------CCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         71 ------GKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        71 ------~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                            ..+..++|||+|+.++.++. +.|.+||+.++
T Consensus       103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSC
T ss_pred             hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCC
Confidence                  23678999999999888875 89999999887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.82  E-value=3.4e-08  Score=60.74  Aligned_cols=80  Identities=6%  Similarity=0.013  Sum_probs=60.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+...+.++.|+|+|+.++.++ .++.+.+|++.....             ....+..+...+..++|+|++..++.++.
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS-------------SVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-------------CEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC-------------CcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            4667899999999999877665 588899998863220             23455566677889999999999877765


Q ss_pred             C-----------CcEEEEeCCCCCC
Q psy11100         91 T-----------GLIIVWMLYKCND  104 (110)
Q Consensus        91 ~-----------~~i~~w~~~~~~~  104 (110)
                      +           +.|.+||+.+++.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCCCCcccccCceEEEEEecCCCCc
Confidence            4           5699999988754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.77  E-value=4.4e-08  Score=60.24  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCC-CCCcCCcccccccceeeeEEeecc-CCCeEEEEEcCCCCeEEEec
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVNLAMNQSLQGH-SGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .|.+.+.+++|+|+|+.+++++ ++.+++||+.. ..              .......+ ...+.+++|+|+++.++.+.
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS--------------PEKVDTGFATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS--------------CEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC--------------ceEeccccccccccceEECCCCCEEEEEE
Confidence            5778899999999999998876 78999999987 64              22333333 36678899999999988887


Q ss_pred             --CCCcEEEE--eCCCCC
Q psy11100         90 --ETGLIIVW--MLYKCN  103 (110)
Q Consensus        90 --~~~~i~~w--~~~~~~  103 (110)
                        .++...+|  +..++.
T Consensus       104 ~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             CTTTSSCEEEEEETTCCC
T ss_pred             eCCCCcceEEEEECCCCc
Confidence              33444444  544443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.72  E-value=8.9e-08  Score=60.54  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=59.3

Q ss_pred             CceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         15 TKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ..+..++++| +++.++++  ++.+.+||+....              ....+.. ...+..++|+|++..++.++.++.
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~--------------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~  317 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--------------LIKAANL-DHTYYCVAFDKKGDKLYLGGTFND  317 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE--------------EEEEEEC-SSCCCEEEECSSSSCEEEESBSSE
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCe--------------EEEEEcC-CCCccceEECCCCCEEEEecCCCe
Confidence            4567889999 99988877  7899999998765              3333432 234678999999998777888899


Q ss_pred             EEEEeCCCCCChhh
Q psy11100         94 IIVWMLYKCNDDDE  107 (110)
Q Consensus        94 i~~w~~~~~~~~~~  107 (110)
                      |.+||..+++.+.+
T Consensus       318 v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          318 LAVFNPDTLEKVKN  331 (349)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEeccccceeee
Confidence            99999988776544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.71  E-value=2.1e-08  Score=68.19  Aligned_cols=74  Identities=9%  Similarity=-0.022  Sum_probs=59.6

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEE--------EcC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII--------WNE   80 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~   80 (110)
                      ..|.+.+..++|+|||+.|+++..++  .|++||+..+.              .. .+..+...+..++        |+|
T Consensus       191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~sp  255 (582)
T 3o4h_A          191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS--------------VE-DLELPSKDFSSYRPTAITWLGYLP  255 (582)
T ss_dssp             CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC--------------EE-ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred             ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc--------------EE-EccCCCcChhhhhhccccceeEcC
Confidence            35778899999999999999888888  78999998765              22 4455555555555        999


Q ss_pred             CCCeEEEecCCCcEEEEeC
Q psy11100         81 QYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        81 ~~~~l~s~~~~~~i~~w~~   99 (110)
                      +|..+++++.++.+++|++
T Consensus       256 dg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          256 DGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TSCEEEEEEETTEEEEEET
T ss_pred             CCcEEEEEEcCCcEEEEEE
Confidence            9988889999999999998

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.70  E-value=5.3e-08  Score=67.66  Aligned_cols=72  Identities=11%  Similarity=0.024  Sum_probs=58.6

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCC---CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG---KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      .+..++|+|||+.|++++. +.+++||+..+   .               ...+..+...+..++|||+|+.++.+. ++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~---------------~~~l~~~~~~~~~~~~SPDG~~la~~~-~~  172 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA---------------VRQLTHGEGFATDAKLSPKGGFVSFIR-GR  172 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS---------------CCBCCCSSSCEEEEEECTTSSEEEEEE-TT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce---------------EEEcccCCcccccccCCCCCCEEEEEe-CC
Confidence            3778999999999988876 89999999876   3               133455667899999999999988887 45


Q ss_pred             cEEEEeCCCCCC
Q psy11100         93 LIIVWMLYKCND  104 (110)
Q Consensus        93 ~i~~w~~~~~~~  104 (110)
                      .|.+||+.++..
T Consensus       173 ~i~~~d~~~g~~  184 (741)
T 2ecf_A          173 NLWVIDLASGRQ  184 (741)
T ss_dssp             EEEEEETTTTEE
T ss_pred             cEEEEecCCCCE
Confidence            899999987643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.69  E-value=3.2e-07  Score=58.39  Aligned_cols=79  Identities=9%  Similarity=0.075  Sum_probs=56.4

Q ss_pred             CceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCC
Q psy11100         15 TKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~   92 (110)
                      ..+..++|+|+|+++ ++...++.+.+|++....           .......+..+...+..++|+|+|+.++.++ .++
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-----------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-----------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-----------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence            457889999999977 455568899999987321           0113444555556678999999999876665 458


Q ss_pred             cEEEE--eCCCCCC
Q psy11100         93 LIIVW--MLYKCND  104 (110)
Q Consensus        93 ~i~~w--~~~~~~~  104 (110)
                      .+.+|  |..+++.
T Consensus       309 ~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          309 NATLYARDLTSGKL  322 (347)
T ss_dssp             EEEEEEECTTTCCE
T ss_pred             cEEEEEEeCCCCeE
Confidence            89999  5556653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.68  E-value=1.5e-08  Score=70.18  Aligned_cols=75  Identities=11%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC---CeEEEEEcCCCCeEEEecCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG---KVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ....+++|+|||+++++ +.|+.+++||...+.              ....+..+..   .|..++|||+|+.++++..+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~--------------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~   81 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNT--------------STVLIEGKKIESLRAIRYEISPDREYALFSYNV   81 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC--------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCc--------------EEEEeccccccccccceEEECCCCCEEEEEecC
Confidence            45678899999997766 678999999998875              3344555543   48899999999998888653


Q ss_pred             ---------CcEEEEeCCCCCC
Q psy11100         92 ---------GLIIVWMLYKCND  104 (110)
Q Consensus        92 ---------~~i~~w~~~~~~~  104 (110)
                               +.+.+||+.++..
T Consensus        82 ~~~~~~~~~~~i~~~d~~~~~~  103 (723)
T 1xfd_A           82 EPIYQHSYTGYYVLSKIPHGDP  103 (723)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCC
T ss_pred             ccceeecceeeEEEEECCCCce
Confidence                     7788999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.66  E-value=3.8e-08  Score=68.13  Aligned_cols=64  Identities=9%  Similarity=0.047  Sum_probs=45.8

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC------------------CeE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG------------------KVR   74 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~   74 (110)
                      |...+..++|+|||+.++.++. +.|++|++..+.              .......+..                  .+.
T Consensus       112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~--------------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A          112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ--------------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC--------------CEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             ccccccccEECCCCCEEEEEEC-CeEEEEECCCCc--------------eEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            3345788999999999988875 789999998765              2222222222                  237


Q ss_pred             EEEEcCCCCeEEEecCC
Q psy11100         75 AIIWNEQYEKLTSSDET   91 (110)
Q Consensus        75 ~~~~s~~~~~l~s~~~~   91 (110)
                      .++|||+|+.|++++.+
T Consensus       177 ~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             EEEECTTSSEEEEEEEE
T ss_pred             eEEECCCCCEEEEEEEC
Confidence            89999999998877643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.65  E-value=8e-08  Score=65.45  Aligned_cols=72  Identities=13%  Similarity=0.005  Sum_probs=59.5

Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC-
Q psy11100         21 AWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML-   99 (110)
Q Consensus        21 ~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~-   99 (110)
                      .++|++..+++...++.|.+||...+.              ...++..... +..++|+|+|+.+++++.++.|.+||+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--------------~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~  208 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK--------------IVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW  208 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC--------------EEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce--------------EEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECc
Confidence            478999889999999999999998876              5566663323 889999999999999999999999999 


Q ss_pred             -CCCCChhh
Q psy11100        100 -YKCNDDDE  107 (110)
Q Consensus       100 -~~~~~~~~  107 (110)
                       .+++.+.+
T Consensus       209 ~~t~~~~~~  217 (543)
T 1nir_A          209 AKEPTKVAE  217 (543)
T ss_dssp             SSSCEEEEE
T ss_pred             CCCCcEEEE
Confidence             77665443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.65  E-value=3.6e-07  Score=57.88  Aligned_cols=76  Identities=11%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             eEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         17 VNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      +..++|+|+|+.++.+.  .++.+.+||.....              ....+..+...+..++|+|++..++.++.++.+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i  208 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIK--------------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGEL  208 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--------------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCc--------------eEEEecCCCCccceEEECCCCCEEEEEcCCCeE
Confidence            67899999998776665  47889999998775              444454455557889999999998888889999


Q ss_pred             EEEeCCCCCChh
Q psy11100         95 IVWMLYKCNDDD  106 (110)
Q Consensus        95 ~~w~~~~~~~~~  106 (110)
                      .+||..+++...
T Consensus       209 ~~~d~~~~~~~~  220 (353)
T 3vgz_A          209 ITIDTADNKILS  220 (353)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEECCCCeEEE
Confidence            999998876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.65  E-value=6.8e-08  Score=67.04  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=55.8

Q ss_pred             eEEEEEecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeee--EEeeccCCCeEEEEEcCCCCeE
Q psy11100         17 VNCLAWHQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMN--QSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      +.+++|+|||+.|++++.         ++.+++||+..+.              ..  ..+   ...+..++|||+|+.|
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~--------------~~~~~~l---~~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE--------------FVRGNEL---PRPIQYLCWSPVGSKL  124 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--------------ECCSSCC---CSSBCCEEECSSTTCE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc--------------cccceec---CcccccceECCCCCEE
Confidence            789999999999988876         6899999998765              10  111   2457789999999999


Q ss_pred             EEecCCCcEEEEeCCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~  104 (110)
                      +.+. ++.|++|++.++..
T Consensus       125 a~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A          125 AYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             EEEE-TTEEEEESSTTSCC
T ss_pred             EEEE-CCeEEEEeCCCCCc
Confidence            8885 77999999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.64  E-value=2.5e-07  Score=58.36  Aligned_cols=78  Identities=9%  Similarity=-0.061  Sum_probs=57.1

Q ss_pred             CCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceee-eEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAM-NQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ...+ .++|+|+|+.+++++. ++.+.+||.....              . ...+..+.....+++|+|+++.++....+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP--------------PKVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS--------------CEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc--------------eeEEecccCCCCccceEECCCCCEEEEecCC
Confidence            3455 8999999996655554 8899999998775              2 34444455555459999999998855544


Q ss_pred             C---cEEEEeCCCCCChh
Q psy11100         92 G---LIIVWMLYKCNDDD  106 (110)
Q Consensus        92 ~---~i~~w~~~~~~~~~  106 (110)
                      +   .|.+||+.++..+.
T Consensus       105 ~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A          105 NHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             SSSCEEEEEETTTTEEEE
T ss_pred             CCcccEEEEECCCCCeEE
Confidence            3   89999998876544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.63  E-value=8.4e-08  Score=61.74  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             EEEecCCCEEEEEec-CCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         20 LAWHQNQGWIAVGGD-DGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~-~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      .+|+|||+.|+..+. ++.  +.+||+..+.              .......+...+...+|+|+|+.|+.+..+..|++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--------------~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--------------ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR  106 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--------------EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--------------eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE
Confidence            789999999888876 663  7778887765              33333344444446789999999999998899999


Q ss_pred             EeCCCCCC
Q psy11100         97 WMLYKCND  104 (110)
Q Consensus        97 w~~~~~~~  104 (110)
                      ||+.++..
T Consensus       107 ~d~~~g~~  114 (388)
T 3pe7_A          107 VDLATLEE  114 (388)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcc
Confidence            99988764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.61  E-value=4.1e-07  Score=57.60  Aligned_cols=80  Identities=11%  Similarity=0.004  Sum_probs=61.0

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec----cCCCeEEEEEcCCCCeEEE-
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG----HSGKVRAIIWNEQYEKLTS-   87 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s-   87 (110)
                      +...+..++|+|+|+.++.++.++.+.+||.....              ....+..    +...+..++|+|++..++. 
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNK--------------ILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE--------------EEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe--------------EEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            33447788999999999999999999999998765              3333332    3456788999999997554 


Q ss_pred             ecCCCcEEEEeCCCCCChh
Q psy11100         88 SDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~  106 (110)
                      ...++.|.+||+.+++...
T Consensus       249 ~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEE
T ss_pred             eCCCCEEEEEECCCCcEEE
Confidence            4456899999998887644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.61  E-value=4e-07  Score=57.31  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC-CcEEEEEcC--CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD-GLLKVLKLD--TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~-~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+...+..++|+|+|+.+++++.+ +.+.+|++.  .+.            ......+..+. .+..++|+|+++.++.+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~  101 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA------------LTFAAESALPG-SLTHISTDHQGQFVFVG  101 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC------------EEEEEEEECSS-CCSEEEECTTSSEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc------------eeeccccccCC-CCcEEEEcCCCCEEEEE
Confidence            466778889999999988888776 899999997  332            11223333333 77899999999976555


Q ss_pred             -cCCCcEEEEeCC
Q psy11100         89 -DETGLIIVWMLY  100 (110)
Q Consensus        89 -~~~~~i~~w~~~  100 (110)
                       ..++.|.+||+.
T Consensus       102 ~~~~~~i~~~d~~  114 (343)
T 1ri6_A          102 SYNAGNVSVTRLE  114 (343)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             ecCCCeEEEEECC
Confidence             458889999984

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.60  E-value=6.3e-08  Score=67.02  Aligned_cols=77  Identities=10%  Similarity=0.085  Sum_probs=56.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCC-----CCCcCCcccccccceeeeEEeeccC--------------CC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-----GKESTGQVAAANVNLAMNQSLQGHS--------------GK   72 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   72 (110)
                      .+.+.+..++|+|||+.++++ .++.|++|++..     +.              .......+.              ..
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~--------------~~~~~~~~~~~~~~g~~~~~ee~~~  182 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR--------------AIAVTIDGTETLVYGQAVHQREFGI  182 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC--------------CEESCSCCBTTEEESSCCGGGCTTC
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC--------------cEEeccCCCCCeEcccchhhhhcCC
Confidence            355678889999999998885 678999999987     53              111111111              22


Q ss_pred             eEEEEEcCCCCeEEEec---------------------------------CCCcEEEEeCCCCC
Q psy11100         73 VRAIIWNEQYEKLTSSD---------------------------------ETGLIIVWMLYKCN  103 (110)
Q Consensus        73 v~~~~~s~~~~~l~s~~---------------------------------~~~~i~~w~~~~~~  103 (110)
                      +..++|||+|+.|++++                                 .+..|.+||+.++.
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence            57899999999988876                                 44679999998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.59  E-value=2.1e-07  Score=64.41  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=54.8

Q ss_pred             eEEEEEecCCCEEEEEe---------------------------------cCCcEEEEEcCCCCCcCCcccccccceeee
Q psy11100         17 VNCLAWHQNQGWIAVGG---------------------------------DDGLLKVLKLDTGKESTGQVAAANVNLAMN   63 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~---------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   63 (110)
                      +.++.|+|||+.|++++                                 .+..+++||+..+.              ..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~--------------~~  248 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK--------------TV  248 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE--------------EE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc--------------eE
Confidence            47899999999998887                                 33568889987664              11


Q ss_pred             EEe--eccCCCeEEEEEcCCCCeEEEecCCC-----cEEEEeCCCC
Q psy11100         64 QSL--QGHSGKVRAIIWNEQYEKLTSSDETG-----LIIVWMLYKC  102 (110)
Q Consensus        64 ~~~--~~~~~~v~~~~~s~~~~~l~s~~~~~-----~i~~w~~~~~  102 (110)
                      ...  ..+...+..++|+|+|+.++.++.+.     .|.+||+.++
T Consensus       249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            111  24556789999999999888766554     8999999887

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.57  E-value=3.8e-07  Score=66.03  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe-------EEEEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV-------RAIIW   78 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~   78 (110)
                      .|.+.+.+++|||||+.|+.++.+      ..|++|++..+.               ...+..|...+       ..++|
T Consensus        50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~---------------~~~lt~~~~~~~~~~~~~~~~~~  114 (1045)
T 1k32_A           50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---------------IKRITYFSGKSTGRRMFTDVAGF  114 (1045)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---------------EEECCCCCEEEETTEECSEEEEE
T ss_pred             eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC---------------eEEcccCCCcccccccccccccC
Confidence            688899999999999999887543      368899987654               34566666666       89999


Q ss_pred             cCCCCeEEEecCC------CcEEEEeCCCCC
Q psy11100         79 NEQYEKLTSSDET------GLIIVWMLYKCN  103 (110)
Q Consensus        79 s~~~~~l~s~~~~------~~i~~w~~~~~~  103 (110)
                      +|+|+.+++++.+      ..|..|++.++.
T Consensus       115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~  145 (1045)
T 1k32_A          115 DPDGNLIISTDAMQPFSSMTCLYRVENDGIN  145 (1045)
T ss_dssp             CTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             CCCCEEEEEECCcCCCcccceEEEEECCCCC
Confidence            9999976666643      358888876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.56  E-value=2.4e-06  Score=54.68  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=55.0

Q ss_pred             CCCceEEEEEecCCCEEEEEecC--CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD--GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-   89 (110)
                      +......++|+|+|++|+.+..+  +.+.+|++....   +.       +..+..+.. ...+..++|+|+|++++.++ 
T Consensus       257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~---g~-------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN---GT-------LTKVGYQLT-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT---CC-------EEEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred             CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC---Cc-------EEEeeEecC-CCCCceEEECCCCCEEEEEEC
Confidence            33456799999999988666554  889999986321   00       112233333 45677899999999877666 


Q ss_pred             CCCcEEEE--eCCCCCC
Q psy11100         90 ETGLIIVW--MLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w--~~~~~~~  104 (110)
                      .++.+.+|  |..+++.
T Consensus       326 ~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          326 DTNVIQIFERDQATGLL  342 (361)
T ss_dssp             TTTEEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEECCCCcE
Confidence            67889996  5555553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.55  E-value=9.1e-07  Score=55.66  Aligned_cols=75  Identities=9%  Similarity=0.064  Sum_probs=52.3

Q ss_pred             CceEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCC
Q psy11100         15 TKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~   92 (110)
                      ..+..++|+|+|+.++ +...++.+.+|++....   +       .......+..+.. +..++|+|++..++.++ .++
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~---~-------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDG---S-------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS---C-------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCC---C-------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence            3566899999998776 44578999999998321   0       0112333433333 78899999999876666 689


Q ss_pred             cEEEEeCC
Q psy11100         93 LIIVWMLY  100 (110)
Q Consensus        93 ~i~~w~~~  100 (110)
                      .+.+|++.
T Consensus       300 ~v~v~~~d  307 (343)
T 1ri6_A          300 HISVYEIV  307 (343)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.53  E-value=5.6e-07  Score=62.72  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCC-----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      +|+..+..++|||||+.|+.+..++     .|++||+..+.              ....... ...+..++|+|||+.|+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--------------~~~~~~~-~~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--------------ELPDVLE-RVKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--------------EEEEEEE-EECSCCEEECTTSSEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------------CCccccc-CcccceEEEEeCCCEEE
Confidence            4445688899999999988765533     79999998875              2221111 12256799999999988


Q ss_pred             EecCCCc----------------EEEEeCCCCC
Q psy11100         87 SSDETGL----------------IIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~----------------i~~w~~~~~~  103 (110)
                      .+..+..                |++|++.+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             EEEECCccccccccccccCCCCEEEEEECCCCc
Confidence            7776654                9999998775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.53  E-value=1.3e-06  Score=55.51  Aligned_cols=77  Identities=9%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CCCceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCCCcCCcccccccceeeeEEeec---------cCCCeEEEEEcCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG---------HSGKVRAIIWNEQY   82 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~   82 (110)
                      +...+..++|+|+|+.+++++ .++.+.+|++....    ..       ..+..+..         ....+..++|+|+|
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g----~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg  152 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG----AL-------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN  152 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS----CE-------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC----Ce-------eecceeecCCCCCCccccCCCceEEEECCCC
Confidence            456778899999999888777 67899999996422    00       01122211         12347889999999


Q ss_pred             CeEEEecCCCcEEEEeCC
Q psy11100         83 EKLTSSDETGLIIVWMLY  100 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~  100 (110)
                      +++++...++.|.+|++.
T Consensus       153 ~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          153 RLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             CEEEEETTTTEEEEEEEC
T ss_pred             cEEEEeCCCCEEEEEEEC
Confidence            976676778899999998

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.52  E-value=3.4e-07  Score=64.13  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=56.3

Q ss_pred             EEEEEecCCCEEEEEecC---------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         18 NCLAWHQNQGWIAVGGDD---------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ...+|||||+.|+.++.+         +.+.+||+..+.               ...+..+...+...+|||||+.++.+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---------------~~~l~~~~~~~~~~~~SPdG~~la~~  129 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---------------LITEERIPNNTQWVTWSPVGHKLAYV  129 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---------------ECCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc---------------EEEcccCCCcceeeEECCCCCEEEEE
Confidence            347899999999888765         456799999875               23345566789999999999999888


Q ss_pred             cCCCcEEEEeCCCCCC
Q psy11100         89 DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~  104 (110)
                      . ++.|++|++.++..
T Consensus       130 ~-~~~i~~~~~~~~~~  144 (740)
T 4a5s_A          130 W-NNDIYVKIEPNLPS  144 (740)
T ss_dssp             E-TTEEEEESSTTSCC
T ss_pred             E-CCeEEEEECCCCce
Confidence            5 68999999887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.51  E-value=5.9e-07  Score=56.40  Aligned_cols=73  Identities=10%  Similarity=0.016  Sum_probs=55.9

Q ss_pred             ceEEEEEecCCCEEEEEe------------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100         16 KVNCLAWHQNQGWIAVGG------------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   83 (110)
                      .+..++|+|+|+.++++.            .++.+.+||.....              ....+.. ...+..++|+|++.
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~~-~~~~~~~~~s~dg~  147 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------------RRKAFEA-PRQITMLAWARDGS  147 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------------EEEEEEC-CSSCCCEEECTTSS
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc--------------EEEEEeC-CCCcceeEECCCCC
Confidence            566789999999888775            57899999998764              3333333 34567889999999


Q ss_pred             eEEEecCCCcEEEEeCCCCCCh
Q psy11100         84 KLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        84 ~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      .++.+  ++.|.+||+.+++..
T Consensus       148 ~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          148 KLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             CEEEE--SSSEEEEETTTTEEE
T ss_pred             EEEEe--CCeEEEEECCCCcEe
Confidence            87776  688999999887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.50  E-value=5.7e-07  Score=56.82  Aligned_cols=74  Identities=8%  Similarity=-0.042  Sum_probs=54.7

Q ss_pred             ceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------CCCeEEEEEcCCCCeEEEe
Q psy11100         16 KVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------SGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        16 ~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+..++|+|+|+.+ ++...++.+.+||+....              ....+...      ...+..++|+|+|+.++.+
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  109 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--------------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT  109 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--------------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--------------EEEEEEcccccccccccccceEECCCCCEEEEE
Confidence            57789999999865 455568899999998765              23333321      2236789999999998877


Q ss_pred             cCC------------CcEEEEeCCCCC
Q psy11100         89 DET------------GLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~------------~~i~~w~~~~~~  103 (110)
                      +.+            +.|.+||+.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             cccccccccccccCCCeEEEEECCCcc
Confidence            754            899999998754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.48  E-value=2.2e-07  Score=64.53  Aligned_cols=72  Identities=11%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC---CeEEEEEcCCCCeEEEecC----
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG---KVRAIIWNEQYEKLTSSDE----   90 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~----   90 (110)
                      ..++|+|+|+++++ +.++.+++||+..+.              ....+..+..   .+..++|||||+.+++++.    
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~   83 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQ--------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL   83 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCC--------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCc--------------EEEEEccccccccceeeEEECCCCCeEEEEecCcee
Confidence            36799999965554 468999999999876              3344444432   3889999999999888765    


Q ss_pred             -----CCcEEEEeCCCCCC
Q psy11100         91 -----TGLIIVWMLYKCND  104 (110)
Q Consensus        91 -----~~~i~~w~~~~~~~  104 (110)
                           ++.|++||+.+++.
T Consensus        84 ~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           84 WRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             SSSCEEEEEEEEETTTTEE
T ss_pred             EEeecceEEEEEECCCCcc
Confidence                 68999999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.48  E-value=2.9e-06  Score=54.29  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=55.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCCCcCCcccccccceeeeEEe---eccCCCeEEEEEcCCCCeEE
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL---QGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ..+......++|+|+|++++.++ .++.+.+|++..+.            +.....+   ..+......++|+|+|+.++
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~------------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~  274 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM------------LDEIQTVAADTVNAQGSGDIHLSPDGKYLY  274 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE------------EEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc------------eEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence            34445678899999999876666 68899999998543            0011222   22334567999999999875


Q ss_pred             Eec-C-CCcEEEEeCC
Q psy11100         87 SSD-E-TGLIIVWMLY  100 (110)
Q Consensus        87 s~~-~-~~~i~~w~~~  100 (110)
                      .++ . ++.|.+|++.
T Consensus       275 v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          275 ASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEECSSSCEEEEEEEC
T ss_pred             EECCCCCCEEEEEEEc
Confidence            554 4 5889999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.47  E-value=1.6e-06  Score=59.67  Aligned_cols=81  Identities=14%  Similarity=0.055  Sum_probs=56.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC--------CcEEEEEcC-CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD--------GLLKVLKLD-TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~--------~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~   82 (110)
                      .+...+..++|+|||+.|+..+.+        ..|++||+. .+.    ..       ........+...+..++|+|+|
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~----~~-------~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR----FA-------DTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC----EE-------EEEEEEEETTBCEEEEEECTTS
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc----cc-------ccEEeCCCCCceEcceEECCCC
Confidence            344667788999999999877654        368999988 441    00       0222333456788999999999


Q ss_pred             CeEEEecCCC--cEEEEeCCCCC
Q psy11100         83 EKLTSSDETG--LIIVWMLYKCN  103 (110)
Q Consensus        83 ~~l~s~~~~~--~i~~w~~~~~~  103 (110)
                      +++++++.++  .|..||+.++.
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCC
T ss_pred             eEEEEECCCCCeEEEEEECCCCc
Confidence            9877777777  56666765554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.46  E-value=1.6e-06  Score=54.68  Aligned_cols=79  Identities=5%  Similarity=0.042  Sum_probs=56.5

Q ss_pred             CCceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-EecCC
Q psy11100         14 NTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SSDET   91 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~~   91 (110)
                      ......++|+|+|+.+ ++...++.+.+||+....    .       ......+.. ...+..++|+|+|+.++ +...+
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~----~-------~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~  242 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE----N-------ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTEST  242 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT----S-------CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSE
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc----c-------cceeeeccC-CCCCceEEECCCCCEEEEEEcCC
Confidence            3557889999999865 445568899999998765    0       001333433 35667899999999754 44567


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      +.|.+||+.+++.
T Consensus       243 ~~i~~~d~~~~~~  255 (331)
T 3u4y_A          243 VDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEEEETTTTEE
T ss_pred             CEEEEEECCCCce
Confidence            8899999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.42  E-value=4.4e-07  Score=63.14  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             CCCCceEEEEEecCCCEEEEE-----ecCCcEEEEEcCCCCCcCCcccccccceeee--EEeeccCCCeEEEEEcCCCCe
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVG-----GDDGLLKVLKLDTGKESTGQVAAANVNLAMN--QSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      +|+..+..++|||||+.|+.+     +.+..|++||+.++.              ..  ..+..  .....++|+|+|+.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--------------~~~~~~~~~--~~~~~~~wspDg~~  181 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--------------WSKVDVIEG--GKYATPKWTPDSKG  181 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--------------BCSSCCBSC--CTTCCCEECTTSSE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--------------CcCCcccCc--ccccceEEecCCCE
Confidence            455578899999999998843     334579999999875              11  01111  11257899999999


Q ss_pred             EEEecCCCc-------------EEEEeCCCCC
Q psy11100         85 LTSSDETGL-------------IIVWMLYKCN  103 (110)
Q Consensus        85 l~s~~~~~~-------------i~~w~~~~~~  103 (110)
                      |+.++.+..             |++|++.++.
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence            888877665             9999998775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.42  E-value=1.8e-06  Score=55.85  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             EEEecCCCEEEEEec-----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         20 LAWHQNQGWIAVGGD-----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ++++|++..+..+..           .+.|.+||..+..              .+..+..+.  +..++|+|+|+.++++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--------------~v~~i~~~~--p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--------------RVARIPGRD--ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--------------EEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--------------EEEEEecCC--eeEEEECCCCCEEEEe
Confidence            678999777655432           3479999998876              566666665  8899999999998877


Q ss_pred             cCCCcEEEEeCCCC--CChhh
Q psy11100         89 DETGLIIVWMLYKC--NDDDE  107 (110)
Q Consensus        89 ~~~~~i~~w~~~~~--~~~~~  107 (110)
                      +. +.|.+||..++  +.+.+
T Consensus       323 n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          323 DG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             CS-SCEEEEECSSSSCEEEEE
T ss_pred             CC-CeEEEEECCCCcceeeEE
Confidence            76 99999999998  65543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.41  E-value=1.3e-05  Score=50.60  Aligned_cols=79  Identities=11%  Similarity=0.063  Sum_probs=60.3

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .+...+..++|+|+|++++++..++.|.+||.....              .......+...+..++++++|.++++...+
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~  107 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGD  107 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--------------EEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--------------EEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence            344567899999999977788888899999987664              222222455779999999999988777655


Q ss_pred             ----CcEEEEeCCCCCC
Q psy11100         92 ----GLIIVWMLYKCND  104 (110)
Q Consensus        92 ----~~i~~w~~~~~~~  104 (110)
                          +.|.+||..++..
T Consensus       108 ~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A          108 FKSTGGIFAATENGDNL  124 (333)
T ss_dssp             SSSCCEEEEECTTSCSC
T ss_pred             CCCCceEEEEeCCCCEE
Confidence                6899999887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.40  E-value=6.5e-07  Score=61.57  Aligned_cols=75  Identities=8%  Similarity=-0.061  Sum_probs=56.4

Q ss_pred             CCCceEEEEEecCCCEEEEEecC----------CcEEEEEcCC------CCCcCCcccccccceeeeEEee-ccCCCeEE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD----------GLLKVLKLDT------GKESTGQVAAANVNLAMNQSLQ-GHSGKVRA   75 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~----------~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~   75 (110)
                      |...+..++|+|||+.|++++.+          ..|++|++..      +.               ...+. .+...+..
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~  192 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------------VRELSDDAHRFVTG  192 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------------SEESSCSCSSEECC
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------------eeEEEecCCCcccC
Confidence            55678899999999999888766          4788999876      32               12333 44466778


Q ss_pred             EEEcCCCCeEEEecCC--------CcEEEEeCC-CC
Q psy11100         76 IIWNEQYEKLTSSDET--------GLIIVWMLY-KC  102 (110)
Q Consensus        76 ~~~s~~~~~l~s~~~~--------~~i~~w~~~-~~  102 (110)
                      ++|||||+.|+.++.+        ..|.+||+. ++
T Consensus       193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            9999999998766533        479999998 45

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.39  E-value=8.7e-07  Score=62.09  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC-----eEEEEEcCCCCeEEEe
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK-----VRAIIWNEQYEKLTSS   88 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~   88 (110)
                      ......+.|+|+|++++++  ++.+++||+.++.              ....+..|...     ...++|||||+.++.+
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~   79 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--------------SSVFLENSTFDEFGHSINDYSISPDGQFILLE   79 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC--------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCc--------------eEEEEechhhhhhcccccceEECCCCCEEEEE
Confidence            4456689999999988886  8999999999876              33445555422     2458999999998887


Q ss_pred             cCC---------CcEEEEeCCCCCC
Q psy11100         89 DET---------GLIIVWMLYKCND  104 (110)
Q Consensus        89 ~~~---------~~i~~w~~~~~~~  104 (110)
                      ..+         +.+.+||+.+++.
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~  104 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQL  104 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             ECCeeeEEEccceEEEEEECCCCcE
Confidence            764         5677999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.38  E-value=3e-06  Score=53.75  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             ceEEEEEecCCCEEEEEecC---Cc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD---GL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+..++|+|||+.|+..+.+   +.  +.+|++..+.              ... +..... +..++|+|+|+.|+.+..
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--------------~~~-l~~~~~-~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--------------SKK-ILEAKN-IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--------------EEE-EEEESE-EEEEEECTTSSEEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--------------eEE-EEcCCC-ccceeECCCCCEEEEEEc
Confidence            46778999999998877653   33  6777776654              222 222223 889999999998776652


Q ss_pred             ---------------------------CCcEEEEeCCCCCC
Q psy11100         91 ---------------------------TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ---------------------------~~~i~~w~~~~~~~  104 (110)
                                                 ...|.+||+.++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          124 KRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             CCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             cCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence                                       25688999987754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.36  E-value=2.1e-05  Score=50.62  Aligned_cols=76  Identities=11%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             CCCceEEEEEecCCCEEEEEec-CCcEEEEEcC-CCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEe
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLD-TGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      +...+..++|+|+|+.+++++. ++.|.+|++. .+.            +.....+.  .+...+..++|+|+|+.++.+
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~------------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE------------VELVGSVDAPDPGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------------EEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC------------EEEeeeEecCCCCCCCCEeEECCCCCEEEEE
Confidence            4467889999999998877654 5789999997 443            00112232  235668899999999987665


Q ss_pred             c-CCCcEEEEeCC
Q psy11100         89 D-ETGLIIVWMLY  100 (110)
Q Consensus        89 ~-~~~~i~~w~~~  100 (110)
                      + .++.+.+|++.
T Consensus       211 ~~~~~~v~v~~~~  223 (365)
T 1jof_A          211 MEAGNRICEYVID  223 (365)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECCCCeEEEEEEe
Confidence            5 57889998764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.27  E-value=2.6e-05  Score=48.66  Aligned_cols=76  Identities=9%  Similarity=-0.191  Sum_probs=60.6

Q ss_pred             CCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         13 NNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +......++|+|+|+ +++++..++.|..|+.....                ..+..+...+..++++++|.++++...+
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~l~~~~dg~l~v~~~~~   89 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQL----------------SPEMHPSHHQNGHCLNKQGHLIACSHGL   89 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCE----------------EEEESSCSSEEEEEECTTCCEEEEETTT
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCe----------------EEEECCCCCcceeeECCCCcEEEEecCC
Confidence            445677899999998 77788888999999987542                3344456778999999999988888777


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      +.|.+||..+++.
T Consensus        90 ~~i~~~d~~~g~~  102 (296)
T 3e5z_A           90 RRLERQREPGGEW  102 (296)
T ss_dssp             TEEEEECSTTCCE
T ss_pred             CeEEEEcCCCCcE
Confidence            8999999977764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.24  E-value=9e-07  Score=56.87  Aligned_cols=73  Identities=12%  Similarity=0.034  Sum_probs=51.8

Q ss_pred             eEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC-eEEEEEcCCCCeEEEecCCC
Q psy11100         17 VNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK-VRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +..++|+|+|+.++.....   ..+.+|++..+.              . ..+..+... ...+.|+|+|+.|+.+..++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--------------~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~  102 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--------------A-VQLTEGKGDNTFGGFISTDERAFFYVKNEL  102 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--------------E-EECCCSSCBCTTTCEECTTSSEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--------------E-EEeecCCCCccccceECCCCCEEEEEEcCC
Confidence            6678899999988776543   367778887654              2 222222222 23378999999998888888


Q ss_pred             cEEEEeCCCCCC
Q psy11100         93 LIIVWMLYKCND  104 (110)
Q Consensus        93 ~i~~w~~~~~~~  104 (110)
                      .|.+||+.++..
T Consensus       103 ~l~~~d~~~~~~  114 (396)
T 3c5m_A          103 NLMKVDLETLEE  114 (396)
T ss_dssp             EEEEEETTTCCE
T ss_pred             cEEEEECCCCCc
Confidence            999999987653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.20  E-value=5.8e-06  Score=53.27  Aligned_cols=75  Identities=8%  Similarity=0.051  Sum_probs=52.1

Q ss_pred             ceEEEE-EecCCCEEEEEecCC------cEEEEEcCC-CCCcCCcccccccceeeeE-EeeccCCCeEEEEEcC---CCC
Q psy11100         16 KVNCLA-WHQNQGWIAVGGDDG------LLKVLKLDT-GKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNE---QYE   83 (110)
Q Consensus        16 ~v~~~~-~~p~~~~l~~~~~~~------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~---~~~   83 (110)
                      .+..++ |+|||++|++++.+.      .+.+|++.. +.            +.... ....+...+..++|+|   +|+
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~------------~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS------------IEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC------------EEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC------------EEEeeeeeecCCCCcccceecCCCcCCC
Confidence            578899 999999887665432      799999863 32            00111 1223344456789999   899


Q ss_pred             eEEEecC-CCcEEEEeCCCC
Q psy11100         84 KLTSSDE-TGLIIVWMLYKC  102 (110)
Q Consensus        84 ~l~s~~~-~~~i~~w~~~~~  102 (110)
                      +++.++. ++.|.+|++...
T Consensus       323 ~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          323 WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEEcCCCeEEEEEEchh
Confidence            9888875 489999988654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.16  E-value=6.8e-05  Score=46.37  Aligned_cols=73  Identities=5%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             CCceEEEEEecCCCEEEEEecCC-cEEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEEEecC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDG-LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ...+..++++|+|+++++...++ .|.+|+....               .+..+..+  ...+..++++|+|+++++ +.
T Consensus       206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~---------------~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~  269 (286)
T 1q7f_A          206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ---------------LISALESKVKHAQCFDVALMDDGSVVLA-SK  269 (286)
T ss_dssp             SCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---------------EEEEEEESSCCSCEEEEEEETTTEEEEE-ET
T ss_pred             cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---------------EEEEEcccCCCCcceeEEECCCCcEEEE-CC
Confidence            35688899999999888877775 9999986432               23333333  234778999999988777 46


Q ss_pred             CCcEEEEeCCCC
Q psy11100         91 TGLIIVWMLYKC  102 (110)
Q Consensus        91 ~~~i~~w~~~~~  102 (110)
                      ++.|.+|++...
T Consensus       270 ~~~v~v~~~~~~  281 (286)
T 1q7f_A          270 DYRLYIYRYVQL  281 (286)
T ss_dssp             TTEEEEEECSCC
T ss_pred             CCeEEEEEcccc
Confidence            899999998654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.13  E-value=1.6e-05  Score=52.28  Aligned_cols=70  Identities=13%  Similarity=-0.020  Sum_probs=52.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...+.++.+.+.  .++.+..||.+.+|++....              ..    .+...|.+++|||+|  ++.+..|
T Consensus       124 ~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--------------~~----~~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          124 SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--------------TK----QLAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--------------EE----EEEESEEEEEECSSE--EEEEETT
T ss_pred             eeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--------------cc----cccCCceEEEEcCCc--eEEEEcC
Confidence            34556777666543  27777889999999998765              21    134679999999999  5677789


Q ss_pred             CcEEEEeCCCCC
Q psy11100         92 GLIIVWMLYKCN  103 (110)
Q Consensus        92 ~~i~~w~~~~~~  103 (110)
                      |.+++|++..+.
T Consensus       182 g~i~~~~~~~~~  193 (388)
T 1xip_A          182 RSFQSFAWRNGE  193 (388)
T ss_dssp             SCEEEEEEETTE
T ss_pred             CcEEEEcCCCcc
Confidence            999999887665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.11  E-value=0.0001  Score=46.85  Aligned_cols=75  Identities=8%  Similarity=-0.028  Sum_probs=58.1

Q ss_pred             CCceEEEEEecCCCEEEEEecC------------------------CcEEEEEcCCCCCcCCcccccccceeeeEEee-c
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDD------------------------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-G   68 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   68 (110)
                      .+.+..++++|+|+++++...+                        +.+.+||...+.              ...... .
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--------------~~~~~~~~   88 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--------------ILQSSGKN   88 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--------------EEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--------------EEeccCCC
Confidence            4679999999999988887766                        368888887665              333333 3


Q ss_pred             cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100         69 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        69 ~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~  102 (110)
                      +-.....++++|+|.++++...++.|..|+....
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~  122 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSK  122 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCS
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            3457889999999999888888899999997543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.06  E-value=5.1e-05  Score=48.69  Aligned_cols=79  Identities=14%  Similarity=-0.087  Sum_probs=54.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEE--EcCCCCeEEEe-
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII--WNEQYEKLTSS-   88 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~-   88 (110)
                      ++...+....|+|||+.|+.++.++.+++||+..+.              .......+...+....  ++|++..++.. 
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  143 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE--------------ENVVYQVPAEWVGYGTWVANSDCTKLVGIE  143 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--------------EEEEEECCTTEEEEEEEEECTTSSEEEEEE
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--------------ceeeeechhhcccccceeECCCCCeecccc
Confidence            343344457899999999999988899999999875              2233344444443333  48999887642 


Q ss_pred             ---------------------cCCCcEEEEeCCCCCC
Q psy11100         89 ---------------------DETGLIIVWMLYKCND  104 (110)
Q Consensus        89 ---------------------~~~~~i~~w~~~~~~~  104 (110)
                                           ..+..|.+||+.++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence                                 2346799999988753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.02  E-value=1.2e-05  Score=52.05  Aligned_cols=75  Identities=7%  Similarity=-0.070  Sum_probs=54.9

Q ss_pred             EEEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeec------cCCCeEEEEEcCCC
Q psy11100         19 CLAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG------HSGKVRAIIWNEQY   82 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~   82 (110)
                      .++++|||+.+..++.          ++.|.+||.....              ....+..      +......++++|+|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--------------~~~~i~~~~~~~~~g~~p~~i~~spdg  119 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--------------FEKEISLPPKRVQGLNYDGLFRQTTDG  119 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--------------EEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--------------EEEEEEcCccccccCCCcceEEECCCC
Confidence            7899999998887762          5679999988765              3333321      12345678999999


Q ss_pred             CeEEEecC--CCcEEEEeCCCCCChhh
Q psy11100         83 EKLTSSDE--TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        83 ~~l~s~~~--~~~i~~w~~~~~~~~~~  107 (110)
                      ++++.+..  ++.|.+||+.+++.+.+
T Consensus       120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          120 KFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             SEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            99777653  67899999998866543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.02  E-value=8.5e-05  Score=48.93  Aligned_cols=73  Identities=11%  Similarity=0.017  Sum_probs=55.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ++.+ |..++|  ++..|+.+ .++.|++||+....              .......+...+..+.+.+.  .++.+..|
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--------------~~~~~~~~~~~v~~i~~~~p--~~av~~~d  145 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS--------------EFRTVTSFEKPVFQLKNVNN--TLVILNSV  145 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------CEEEEEECSSCEEEEEECSS--EEEEEETT
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------ccCccceeecceeeEEecCC--CEEEEECC
Confidence            4555 999999  88999888 78999999998764              12233445566777766543  38888999


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      |.|.+||+.++..
T Consensus       146 G~L~v~dl~~~~~  158 (388)
T 1xip_A          146 NDLSALDLRTKST  158 (388)
T ss_dssp             SEEEEEETTTCCE
T ss_pred             CCEEEEEccCCcc
Confidence            9999999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.00  E-value=0.00011  Score=45.44  Aligned_cols=73  Identities=11%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      +...+..++++|+|+.+++...++.|.+|+....               ....+..+  ...+..++++++|.++++...
T Consensus       162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------------YLRQIGGEGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------------EEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------------EEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence            4456889999999998777777889999997543               23334332  356889999999998888877


Q ss_pred             CC-cEEEEeCC
Q psy11100         91 TG-LIIVWMLY  100 (110)
Q Consensus        91 ~~-~i~~w~~~  100 (110)
                      ++ .|.+|+..
T Consensus       227 ~~~~i~~~~~~  237 (286)
T 1q7f_A          227 NNFNLTIFTQD  237 (286)
T ss_dssp             SSCEEEEECTT
T ss_pred             CCEEEEEECCC
Confidence            75 99999954

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.00  E-value=0.00012  Score=46.49  Aligned_cols=80  Identities=10%  Similarity=0.006  Sum_probs=58.1

Q ss_pred             CCCceEEEEEec-CCCEEEEEe-cCCcEEEEEcCCCCCcCCcccccccceeeeEEeec----------cCCCeEEEEEcC
Q psy11100         13 NNTKVNCLAWHQ-NQGWIAVGG-DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG----------HSGKVRAIIWNE   80 (110)
Q Consensus        13 h~~~v~~~~~~p-~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~s~   80 (110)
                      +......++++| ++..+++.+ .++.|++|+.. +.              ....+..          +-.....++++|
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~--------------~~~~~~~~g~~~~~~~~~~~~p~gia~d~  205 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK--------------FVTQWGEESSGSSPRPGQFSVPHSLALVP  205 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC--------------EEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC--------------EEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence            344688899999 788888775 68899999844 32              2233321          223478999999


Q ss_pred             C-CCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         81 Q-YEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        81 ~-~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      + +.++++...++.|++|+..+++.+..
T Consensus       206 ~~g~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          206 HLDQLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            8 77788888899999999987766544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.96  E-value=2.2e-05  Score=55.13  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             CCCceEEEEEecCCCEEEEEecC-C----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD-G----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      |+..+..++|||||+.|+.+..+ |    .|++||+..+.              .... ..+...+..++|+|+ +.|+.
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--------------~~~~-~~~~~~~~~~~wspD-~~l~~  224 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--------------PLAD-ELKWVKFSGLAWLGN-DALLY  224 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--------------EEEE-EEEEEESCCCEESTT-SEEEE
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------------CCCc-cCCCceeccEEEECC-CEEEE
Confidence            43467889999999998876543 3    59999999876              2111 111112346899999 88776


Q ss_pred             ecCCCc--------------EEEEeCCCCC
Q psy11100         88 SDETGL--------------IIVWMLYKCN  103 (110)
Q Consensus        88 ~~~~~~--------------i~~w~~~~~~  103 (110)
                      +..+..              |++|++.++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  254 (741)
T 1yr2_A          225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQ  254 (741)
T ss_dssp             EECCCC--------CCCCCEEEEEETTSCG
T ss_pred             EEecCcccccccccCCCCCEEEEEECCCCc
Confidence            665443              8889987665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.86  E-value=0.00012  Score=46.96  Aligned_cols=72  Identities=6%  Similarity=-0.042  Sum_probs=48.3

Q ss_pred             ceEEEEEecCCCEEEEEecC-----CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEec
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD-----GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSD   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~   89 (110)
                      .+..++|+|+|+.|+..+.+     +.+.+||+..+.              . ..+.... ... +.|+| +|..++.+.
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~--------------~-~~l~~~~-~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE--------------N-EEVMVMP-PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC--------------E-EEEEECC-SEE-EEEECSSSSEEEEEE
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCC--------------e-EEeeeCC-CCC-CCccCCCCceEEEec
Confidence            47778999999977666443     349999987664              1 1111111 123 88999 999877643


Q ss_pred             ----------------CCCcEEEEeCCCCCC
Q psy11100         90 ----------------ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ----------------~~~~i~~w~~~~~~~  104 (110)
                                      .+..|.+||+.++..
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCce
Confidence                            346799999887653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.84  E-value=0.00014  Score=50.84  Aligned_cols=75  Identities=11%  Similarity=0.075  Sum_probs=52.2

Q ss_pred             eEEEEEecCCCEEEEEecCCc----------------EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGL----------------LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE   80 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   80 (110)
                      +..++|+|||+.|+.++.++.                |++|++.+...   ..       ..+.....+...+..+.|||
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~---~~-------~~v~~~~~~~~~~~~~~~Sp  242 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS---ED-------ILCAEFPDEPKWMGGAELSD  242 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG---GC-------EEEECCTTCTTCEEEEEECT
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc---cc-------eEEeccCCCCeEEEEEEEcC
Confidence            456899999999988887765                89999876530   00       01112222445578899999


Q ss_pred             CCCeEEEecC-----CCcEEEEeCCC
Q psy11100         81 QYEKLTSSDE-----TGLIIVWMLYK  101 (110)
Q Consensus        81 ~~~~l~s~~~-----~~~i~~w~~~~  101 (110)
                      +|+.++....     +..|.+||+.+
T Consensus       243 Dg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          243 DGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             CCCEEEEEEEccCCCccEEEEEECcc
Confidence            9998765543     56899999876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.84  E-value=9.9e-05  Score=51.46  Aligned_cols=76  Identities=8%  Similarity=-0.111  Sum_probs=52.2

Q ss_pred             EEEEEecCCCEEEEEecCCc-------------EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100         18 NCLAWHQNQGWIAVGGDDGL-------------LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK   84 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~-------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~   84 (110)
                      ..++|+|||+.++.++.+..             |++|++.+...   .       -..+.....+...+..+.|||+|+.
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~---~-------~~lv~~~~~~~~~~~~~~~SpDG~~  240 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS---K-------DTVVHERTGDPTTFLQSDLSRDGKY  240 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG---G-------CEEEECCCCCTTCEEEEEECTTSCC
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch---h-------ceEEEecCCCCEEEEEEEECCCCCE
Confidence            57899999999998887765             99999886540   0       0012222334457889999999998


Q ss_pred             EEEecCCC----cEEEEeCCCCC
Q psy11100         85 LTSSDETG----LIIVWMLYKCN  103 (110)
Q Consensus        85 l~s~~~~~----~i~~w~~~~~~  103 (110)
                      ++....++    .|.+|+..++.
T Consensus       241 l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          241 LFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEEEEeCCCCceEEEEEcCCCCc
Confidence            77665444    67777665443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.81  E-value=0.00077  Score=41.94  Aligned_cols=73  Identities=8%  Similarity=0.158  Sum_probs=55.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCc
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~   93 (110)
                      ..+..++++++|.+.++...++.|.+|+..++.              ....+..+...+.++++++++. ++++...++.
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~  291 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc--------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe
Confidence            557788999999887777677889999887443              2234444557789999999999 5666667789


Q ss_pred             EEEEeCCC
Q psy11100         94 IIVWMLYK  101 (110)
Q Consensus        94 i~~w~~~~  101 (110)
                      |..+++..
T Consensus       292 l~~~~~~~  299 (314)
T 1pjx_A          292 VWKFEWQR  299 (314)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            99999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.78  E-value=0.00027  Score=43.98  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCC-CCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+......++|+|+++.+++...++.+.+|++.. +.    . .      .....+..+...+..++++++|.++++.  
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~----~-~------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--  235 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE----T-E------YQGVHFTVEPGKTDGLRVDAGGLIWASA--  235 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC----E-E------EEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc----C-c------CCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence            3445678899999999887767778999999872 22    0 0      0012222234556679999999987666  


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      ++.|.+|+.. ++.
T Consensus       236 ~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          236 GDGVHVLTPD-GDE  248 (296)
T ss_dssp             TTEEEEECTT-SCE
T ss_pred             CCeEEEECCC-CCE
Confidence            7889999986 443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.77  E-value=0.00051  Score=41.88  Aligned_cols=76  Identities=5%  Similarity=-0.093  Sum_probs=57.1

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ..+..++++++|...++...++.|.+|+.....              .......+-..+..++++++|.++++...++.|
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--------------STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC--------------CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc--------------ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            567889999999877777778889999886543              111111223568899999999988888889999


Q ss_pred             EEEeCCCCCC
Q psy11100         95 IVWMLYKCND  104 (110)
Q Consensus        95 ~~w~~~~~~~  104 (110)
                      .++++...+.
T Consensus       258 ~~~~~~~~~~  267 (270)
T 1rwi_B          258 VKLTSLEHHH  267 (270)
T ss_dssp             EEECCCGGGS
T ss_pred             EEEcCCCccc
Confidence            9999876554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.73  E-value=0.00053  Score=47.23  Aligned_cols=75  Identities=11%  Similarity=0.024  Sum_probs=56.0

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcC--CCCCcCCcccccccceeeeEEeeccCCCeEEEEEc----CCCCeEEEec
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLD--TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN----EQYEKLTSSD   89 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~s~~   89 (110)
                      .+..+.++|||+++.+++.++.|.++|+.  +..              ....+.. ......++|+    |+|++++.++
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--------------~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--------------TVAEIKI-GSEARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--------------EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--------------EeEEEec-CCCCceeEEccccCCCCCEEEEEE
Confidence            45689999999999889999999999995  443              3334433 2345789999    6999866555


Q ss_pred             -CCCcEEEEeCCCCCCh
Q psy11100         90 -ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        90 -~~~~i~~w~~~~~~~~  105 (110)
                       .++.+.++|..+.+.+
T Consensus       263 ~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             EETTEEEEEETTTCCEE
T ss_pred             ccCCeEEEEECCCCcEE
Confidence             5689999998776544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.69  E-value=0.00047  Score=44.94  Aligned_cols=74  Identities=8%  Similarity=-0.128  Sum_probs=52.5

Q ss_pred             EEEEecCCCEEEEEe----------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------CCCeEEEEEcCC
Q psy11100         19 CLAWHQNQGWIAVGG----------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------SGKVRAIIWNEQ   81 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~   81 (110)
                      .++++|||+.+..+.          .++.+.++|.....              ....+.-.       ......++|+|+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--------------~~~~i~~~~~~~~~~g~~p~~~~~spD  135 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--------------EEEEEECCCccccccCCCccceEECCC
Confidence            789999999887775          35679999998654              22222111       123457899999


Q ss_pred             CCeEEEecC--CCcEEEEeCCCCCChhh
Q psy11100         82 YEKLTSSDE--TGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        82 ~~~l~s~~~--~~~i~~w~~~~~~~~~~  107 (110)
                      |++++.++.  ++.|.++| .+++...+
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            999777653  57899999 88876544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.67  E-value=9.9e-05  Score=51.57  Aligned_cols=77  Identities=13%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEec-C----CcEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCC
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGD-D----GLLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~-~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~   83 (110)
                      ..+|...+..++|||||++++.+.. .    ..|+++|+.++.              ... .+..  .....++|+ |++
T Consensus       124 a~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--------------~~~~~~~~--~k~~~~~Ws-Dg~  186 (693)
T 3iuj_A          124 SPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--------------PLETPLKD--VKFSGISWL-GNE  186 (693)
T ss_dssp             STTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--------------EEEEEEEE--EESCCCEEE-TTT
T ss_pred             cCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--------------CCccccCC--ceeccEEEe-CCC
Confidence            3456667888999999998875432 2    468999999875              111 1111  112467899 999


Q ss_pred             eEEEecCCC-------------cEEEEeCCCCC
Q psy11100         84 KLTSSDETG-------------LIIVWMLYKCN  103 (110)
Q Consensus        84 ~l~s~~~~~-------------~i~~w~~~~~~  103 (110)
                      .|+.+..+.             .|++|++.++.
T Consensus       187 ~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          187 GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ  219 (693)
T ss_dssp             EEEEEESSCCC-------CCCCEEEEEETTSCG
T ss_pred             EEEEEEecCcccccccccCCCcEEEEEECCCCc
Confidence            877776553             38899987765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.64  E-value=0.00015  Score=45.28  Aligned_cols=66  Identities=11%  Similarity=-0.060  Sum_probs=50.4

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC-CCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-GKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ++.+++++.++.|.+||..++.              .+-.+..+. ..+.++.+.|+|+.+++  .++.|..||. +|+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~--------------~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~   67 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKE--------------IVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRE   67 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTE--------------EEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCe--------------EEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCE
Confidence            5778899999999999997776              445555544 46788999999998884  4677888888 6766


Q ss_pred             hhhh
Q psy11100        105 DDEW  108 (110)
Q Consensus       105 ~~~~  108 (110)
                      +.++
T Consensus        68 ~W~~   71 (276)
T 3no2_A           68 LWNI   71 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.60  E-value=0.0024  Score=40.19  Aligned_cols=78  Identities=5%  Similarity=0.003  Sum_probs=53.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEecC----CcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDD----GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l   85 (110)
                      .+...+.+++++|+|+++++...+    +.|.+||.....              ....+.  .....+..++++|+|.++
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN--------------LQDIIEDLSTAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS--------------CEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE--------------EEEEEccCccCCcccceEECCCCCEE
Confidence            345678999999999987776655    578889887654              111121  234568899999999987


Q ss_pred             EEecC------CCcEEEEeCCCCC
Q psy11100         86 TSSDE------TGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~------~~~i~~w~~~~~~  103 (110)
                      ++...      .+.|..++..+++
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~  173 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRT  173 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCC
T ss_pred             EEeccccccCCCceEEEEeCCCCE
Confidence            76653      3456666665443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.55  E-value=0.00078  Score=42.85  Aligned_cols=79  Identities=9%  Similarity=0.025  Sum_probs=53.9

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEe----c
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSS----D   89 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~   89 (110)
                      .....++++|++..+..+..  .+.++|......    .        ....+.........++++| ++.++++.    .
T Consensus       225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~----~--------~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~  290 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV----P--------VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ  290 (328)
T ss_dssp             CCCEEEEECTTSCEEEEESS--SEEEEETTCSSC----C--------SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred             CCceeEEEecCCCEEEEEcc--EEEEEECCCCce----e--------eeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence            36788999999988877654  888999876540    0        0000111135678899999 56666666    5


Q ss_pred             CCCcEEEEeCCCCCChhhh
Q psy11100         90 ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~~~~~  108 (110)
                      .++.|.+||.. ++.+.++
T Consensus       291 ~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          291 QQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             SEEEEEEECTT-CCEEEEE
T ss_pred             cCCEEEEECCC-CCEEEEE
Confidence            67899999998 7765543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.54  E-value=0.0017  Score=39.47  Aligned_cols=74  Identities=8%  Similarity=-0.005  Sum_probs=54.3

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ..+..++++|+|+..++...++.|.+|+.....              ...........+..++++++|.++++...++.|
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v  215 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--------------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV  215 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--------------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--------------eEeecccCCCCceEEEECCCCCEEEEECCCCcE
Confidence            356788999999877776667889999877654              111111222567899999999888888788899


Q ss_pred             EEEeCCCC
Q psy11100         95 IVWMLYKC  102 (110)
Q Consensus        95 ~~w~~~~~  102 (110)
                      .+|+....
T Consensus       216 ~~~~~~~~  223 (270)
T 1rwi_B          216 VKLLAGST  223 (270)
T ss_dssp             EEECTTCS
T ss_pred             EEEcCCCC
Confidence            99998654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.51  E-value=0.00016  Score=47.56  Aligned_cols=75  Identities=9%  Similarity=-0.129  Sum_probs=54.1

Q ss_pred             EEEecCCCEEEEEe----------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------CCCeEEEEEcCCC
Q psy11100         20 LAWHQNQGWIAVGG----------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------SGKVRAIIWNEQY   82 (110)
Q Consensus        20 ~~~~p~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~   82 (110)
                      ++++|||+.+..++          .++.|.+||..+..              ....+.-.       ......++++|+|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--------------v~~~I~v~~g~r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--------------PTADIELPDAPRFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------------EEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--------------EEEEEECCCccccccCCCCceEEEcCCC
Confidence            89999999776654          35679999998876              33333211       1234568999999


Q ss_pred             CeEEEecC--CCcEEEEeCCCCCChhhh
Q psy11100         83 EKLTSSDE--TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        83 ~~l~s~~~--~~~i~~w~~~~~~~~~~~  108 (110)
                      +.+..+..  ++.|.++|..+++.+.++
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            98666653  688999999998876554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.49  E-value=0.00059  Score=42.61  Aligned_cols=74  Identities=7%  Similarity=0.016  Sum_probs=56.1

Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100         19 CLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM   98 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~   98 (110)
                      .++..++|.++++...++.|..||.. ++              .+-.+... .....+...++|..++++..++.|..+|
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~--------------~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQ--------------LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SC--------------EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CC--------------EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence            34567889999888888999999987 65              33444332 3455677789999988888888999999


Q ss_pred             CCCCCChhhh
Q psy11100         99 LYKCNDDDEW  108 (110)
Q Consensus        99 ~~~~~~~~~~  108 (110)
                      ..+|+.+.++
T Consensus       193 ~~tG~~~w~~  202 (276)
T 3no2_A          193 LESNRIVRRV  202 (276)
T ss_dssp             TTTCCEEEEE
T ss_pred             CcCCcEEEEe
Confidence            9988876654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.49  E-value=0.0024  Score=41.66  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=52.7

Q ss_pred             EEEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100         19 CLAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      .+.++|++..+.....          ++.|.+.|..+..              ....+.. ......++|+|+|+ .++.
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--------------vv~~i~~-g~~p~~i~~s~Dg~~~l~v  335 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--------------TSSQISL-GHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--------------EEEEEEC-CCCcCeEEECCCCCeEEEE
Confidence            3677888776655432          3468888887765              4445532 23577999999999 6666


Q ss_pred             ec-CCCcEEEEeCCCCCChhh
Q psy11100         88 SD-ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        88 ~~-~~~~i~~w~~~~~~~~~~  107 (110)
                      +. .++.|.++|..+++.+..
T Consensus       336 ~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          336 LSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EcCCCCeEEEEECCCCCEEee
Confidence            66 589999999999887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.48  E-value=0.002  Score=40.32  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             ceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ....++|+|+++.+ ++...++.|.+|++....   +..    .+......+.........+++.++|.++++....+.|
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~---G~~----~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT---GQI----SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT---CCE----EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCC---Ccc----cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence            35678999999866 444557789999874211   000    0000122222334567789999999988887778889


Q ss_pred             EEEeCCCCCChhhh
Q psy11100         95 IVWMLYKCNDDDEW  108 (110)
Q Consensus        95 ~~w~~~~~~~~~~~  108 (110)
                      ..||..+++.+.++
T Consensus       223 ~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          223 IRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEECTTTCCEEEEE
T ss_pred             EEEcCCCceEEEEE
Confidence            99999988765443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.36  E-value=0.0059  Score=38.23  Aligned_cols=70  Identities=13%  Similarity=-0.034  Sum_probs=51.7

Q ss_pred             CceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         15 TKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      .......|+|+|+ ++.+...++.+..|+.. +.               ...+......+..++++++|.++++...++.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---------------EEEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---------------EEEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence            4566789999988 56666677889999874 32               1334445567889999999998777666678


Q ss_pred             EEEEeCC
Q psy11100         94 IIVWMLY  100 (110)
Q Consensus        94 i~~w~~~  100 (110)
                      |..|+..
T Consensus       109 v~~~~~~  115 (305)
T 3dr2_A          109 ITRSDAD  115 (305)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            8888875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.32  E-value=0.0015  Score=45.07  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=51.9

Q ss_pred             cCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCC--C
Q psy11100         24 QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY--K  101 (110)
Q Consensus        24 p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~--~  101 (110)
                      |.+..+++...++.|.++|..+..              .+..+.. ...+..+.++|+|+.+..++.++.|.+||+.  +
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~--------------v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t  229 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE--------------IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE  229 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC--------------EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe--------------EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence            444566777778999999999876              4444542 2456789999999998888889999999995  6


Q ss_pred             CCChhh
Q psy11100        102 CNDDDE  107 (110)
Q Consensus       102 ~~~~~~  107 (110)
                      ++.+.+
T Consensus       230 ~~~v~~  235 (567)
T 1qks_A          230 PTTVAE  235 (567)
T ss_dssp             CCEEEE
T ss_pred             CcEeEE
Confidence            654433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.30  E-value=0.0077  Score=36.91  Aligned_cols=74  Identities=14%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +...+.+++++++|...++...++.+.+|+.. ...             ...........+..+++.++|..+++...++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~   78 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-------------TEYPLPTPDAKVMCLTISSDGEVWFTENAAN   78 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-------------EEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-------------EEecCCcccCceeeEEECCCCCEEEeCCCCC
Confidence            44678999999999977766667889999887 430             1111122346788999999999888877778


Q ss_pred             cEEEEeCC
Q psy11100         93 LIIVWMLY  100 (110)
Q Consensus        93 ~i~~w~~~  100 (110)
                      .|..|+..
T Consensus        79 ~i~~~~~~   86 (299)
T 2z2n_A           79 KIGRITKK   86 (299)
T ss_dssp             EEEEECTT
T ss_pred             eEEEECCC
Confidence            89888875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.27  E-value=0.01  Score=36.35  Aligned_cols=76  Identities=9%  Similarity=-0.062  Sum_probs=53.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +...+..++++++|...++...++.+..|+.....              ...........+..+++.+++.++++...++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~--------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  120 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGII--------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGN  120 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE--------------EEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE--------------EEEeCCCcCCCceeeEECCCCCEEEEecCCc
Confidence            34668889999999877776667788888865221              1111222345688999999998888877778


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      .|..||. ++.
T Consensus       121 ~i~~~d~-~g~  130 (299)
T 2z2n_A          121 RIGRITD-DGK  130 (299)
T ss_dssp             EEEEECT-TCC
T ss_pred             eEEEECC-CCC
Confidence            8998887 443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.20  E-value=0.0058  Score=38.53  Aligned_cols=70  Identities=6%  Similarity=-0.032  Sum_probs=48.1

Q ss_pred             CCCCCceEE-EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         11 IPNNTKVNC-LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        11 ~~h~~~v~~-~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+...+.. +.|+ ++ .++++..++.+++| +..+.              . ..+..+...|..++|+|  ..+++++
T Consensus       259 ~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~--------------~-~~~~~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          259 DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE--------------I-KPIAKGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--------------E-EEEECSSSEEEEEEESS--SEEEEEE
T ss_pred             ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--------------e-EEEecCCCeEEeeeeeC--cEEEEEc
Confidence            355667776 8999 88 88888999999999 77332              2 23333467788999999  5655555


Q ss_pred             CCCcE-EEEeCC
Q psy11100         90 ETGLI-IVWMLY  100 (110)
Q Consensus        90 ~~~~i-~~w~~~  100 (110)
                      .++.. .+|.+.
T Consensus       319 ~~~~~~~l~~~~  330 (347)
T 2gop_A          319 TATRLRELFTWD  330 (347)
T ss_dssp             CSSSCCEEEEES
T ss_pred             CCCChHHheEeC
Confidence            55443 566554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.19  E-value=0.0021  Score=42.00  Aligned_cols=74  Identities=12%  Similarity=0.035  Sum_probs=52.5

Q ss_pred             EEEecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100         20 LAWHQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      +.++|++..+..+..         ++.+.++|.....              .+..+... .....++|+|+|+. +++..
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------------vv~~i~vg-~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------------TSGPISNG-HDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------------EEECCEEE-EEECEEEECCSSSCEEEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------------EEEEEECC-CCcceEEECCCCCEEEEEcc
Confidence            679999887765432         2356699998876              33333322 24678999999985 66666


Q ss_pred             -CCCcEEEEeCCCCCChhhh
Q psy11100         90 -ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        90 -~~~~i~~w~~~~~~~~~~~  108 (110)
                       .++.|.++|+.+++.+..+
T Consensus       334 ~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          334 AGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             TTTTEEEEEESSSCEEEEEC
T ss_pred             CCCCeEEEEECCCCcEEEEE
Confidence             5899999999998876544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.17  E-value=0.0066  Score=37.66  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             CceEEEEEecCCCEEEE-------EecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-----ccCCCeEEEEEcCC-
Q psy11100         15 TKVNCLAWHQNQGWIAV-------GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-----GHSGKVRAIIWNEQ-   81 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~-   81 (110)
                      .....++|+++|...++       ...++.|.+|+...+.              . ..+.     ++...+..++++++ 
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--------------~-~~~~~~~~~~~~~~~~~i~~~~~~   82 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--------------K-TVICKPEVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC--------------E-EEEECCEETTEECCEEEEEECSSS
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--------------E-EEEEecccCCCCCCCceEEEecCC
Confidence            45678999999987776       4667889999876654              1 1111     13466889999999 


Q ss_pred             CCeEEEecCCCcEEEEeCCCCC
Q psy11100         82 YEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        82 ~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                      +.++++.. ...|..||.. ++
T Consensus        83 g~l~v~~~-~~~l~~~d~~-g~  102 (314)
T 1pjx_A           83 NQLFVADM-RLGLLVVQTD-GT  102 (314)
T ss_dssp             SEEEEEET-TTEEEEEETT-SC
T ss_pred             CcEEEEEC-CCCEEEEeCC-CC
Confidence            77665554 3378888877 54

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.14  E-value=0.0037  Score=43.98  Aligned_cols=74  Identities=9%  Similarity=-0.036  Sum_probs=48.1

Q ss_pred             EEEEEecCCCEEEEEecCCc--------------EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100         18 NCLAWHQNQGWIAVGGDDGL--------------LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE   83 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~--------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   83 (110)
                      ..++|+|| +.++.+..+..              |++|++.+...   ..       ..+.....+...+..+.|||+|+
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~---~~-------~lv~~~~~~~~~~~~~~~SpDG~  280 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS---AD-------QPVFATPELPKRGHGASVSSDGR  280 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG---GC-------EEEECCTTCTTCEEEEEECTTSC
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch---hC-------EEEeccCCCCeEEEEEEECCCCC
Confidence            46789999 88888776554              77888765430   00       01111122233578999999999


Q ss_pred             eEEEecC-----CCcEEEEeCCCC
Q psy11100         84 KLTSSDE-----TGLIIVWMLYKC  102 (110)
Q Consensus        84 ~l~s~~~-----~~~i~~w~~~~~  102 (110)
                      .++....     ...|.+||+.++
T Consensus       281 ~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          281 WVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEEEEEEccCCCcceEEEEECCCC
Confidence            8665553     347999998776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.11  E-value=0.00085  Score=43.54  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      ++..+++++.|+.+..||..++.              ..-.+..  +.+.+..+..++..++.++.++.|+.||..+|+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~--------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS--------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC--------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence            56778889999999999998876              2223332  3333333455677788888899999999988876


Q ss_pred             hh
Q psy11100        105 DD  106 (110)
Q Consensus       105 ~~  106 (110)
                      +.
T Consensus        72 ~w   73 (369)
T 2hz6_A           72 LT   73 (369)
T ss_dssp             SE
T ss_pred             ee
Confidence            43

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.03  E-value=0.016  Score=36.12  Aligned_cols=73  Identities=7%  Similarity=-0.042  Sum_probs=51.5

Q ss_pred             CCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         14 NTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        14 ~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      ..-.....|+|+ +.++.+...++.|..||.....              . ..+ .....+.+++++++|.++++.  +.
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--------------~-~~~-~~~~~~~~i~~~~dG~l~v~~--~~   73 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--------------V-QRV-TMDAPVSSVALRQSGGYVATI--GT   73 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------------E-EEE-ECSSCEEEEEEBTTSSEEEEE--TT
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--------------E-EEE-eCCCceEEEEECCCCCEEEEE--CC
Confidence            344567899996 4556666667889999988764              1 222 234678899999999976654  56


Q ss_pred             cEEEEeCCCCCC
Q psy11100         93 LIIVWMLYKCND  104 (110)
Q Consensus        93 ~i~~w~~~~~~~  104 (110)
                      .|..||..+++.
T Consensus        74 ~l~~~d~~~g~~   85 (297)
T 3g4e_A           74 KFCALNWKEQSA   85 (297)
T ss_dssp             EEEEEETTTTEE
T ss_pred             eEEEEECCCCcE
Confidence            788899877653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.01  E-value=0.0029  Score=42.19  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             EEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100         20 LAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS   88 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~   88 (110)
                      ++++|++..+.....          ++.|.+.|..+..              ....+..- .....++|+|+++ .+++.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------------vv~~I~vg-~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------------RINKIELG-HEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------------EEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence            678998876655432          3468899988876              44444321 2467899999999 77666


Q ss_pred             c-CCCcEEEEeCCCCCChhhh
Q psy11100         89 D-ETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~-~~~~i~~w~~~~~~~~~~~  108 (110)
                      . .++.|.++|..+++.+..+
T Consensus       389 n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEe
Confidence            6 6899999999998876553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.98  E-value=0.0074  Score=38.33  Aligned_cols=74  Identities=8%  Similarity=-0.073  Sum_probs=52.6

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV   96 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~   96 (110)
                      ...+.+. ++...++...++.|.++|..+..              ...++. .......+++++++..+++...++.|.+
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--------------~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~  109 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--------------EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFI  109 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--------------EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEE
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccE--------------EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEE
Confidence            4556653 34555566667899999999876              444453 2456788999999866666657899999


Q ss_pred             EeCCCCCChh
Q psy11100         97 WMLYKCNDDD  106 (110)
Q Consensus        97 w~~~~~~~~~  106 (110)
                      ||+.+++...
T Consensus       110 iD~~t~~~~~  119 (328)
T 3dsm_A          110 INPKTYEITG  119 (328)
T ss_dssp             EETTTTEEEE
T ss_pred             EECCCCeEEE
Confidence            9998876543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.97  E-value=0.00086  Score=44.70  Aligned_cols=76  Identities=9%  Similarity=-0.131  Sum_probs=53.8

Q ss_pred             EEEEecCCCEEEEEe----------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------CCCeEEEEEcCC
Q psy11100         19 CLAWHQNQGWIAVGG----------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------SGKVRAIIWNEQ   81 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~   81 (110)
                      .+.++|||+.+..++          .++.|.++|..+..              ....+.-.       ......++++|+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--------------vv~~I~v~g~~r~~~g~~P~~~~~spD  187 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFLVGTYQWMNALTPD  187 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------------EEEEEEETTCCCCCBSCCGGGSEECTT
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--------------EEEEEECCCccccccCCCcceEEEcCC
Confidence            689999999876665          35689999998876              33333211       123346899999


Q ss_pred             CCeEEEecC--CCcEEEEeCCCCCChhhh
Q psy11100         82 YEKLTSSDE--TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        82 ~~~l~s~~~--~~~i~~w~~~~~~~~~~~  108 (110)
                      |+++..+..  ++.|.+.|..+++.+.++
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I  216 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRML  216 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence            999776653  678999999988765443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.94  E-value=0.019  Score=36.41  Aligned_cols=71  Identities=10%  Similarity=-0.097  Sum_probs=49.7

Q ss_pred             ceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      -.....|+|++ .++.+...++.|..|+.....               ...+. ....+.+++|+++|.++++. . ..|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---------------~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl  111 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR---------------KTVHA-LPFMGSALAKISDSKQLIAS-D-DGL  111 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE---------------EEEEE-CSSCEEEEEEEETTEEEEEE-T-TEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc---------------EEEEE-CCCcceEEEEeCCCeEEEEE-C-CCE
Confidence            35678999974 456666667889999987654               12222 23578899999999887765 2 348


Q ss_pred             EEEeCCCCCC
Q psy11100         95 IVWMLYKCND  104 (110)
Q Consensus        95 ~~w~~~~~~~  104 (110)
                      .+||..++..
T Consensus       112 ~~~d~~~g~~  121 (326)
T 2ghs_A          112 FLRDTATGVL  121 (326)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            8899877653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.90  E-value=0.014  Score=38.40  Aligned_cols=73  Identities=16%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC--
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG--   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~--   92 (110)
                      .....++++|+++++++...++.|++||.....              ....... ..... ++|++++..++.++.++  
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~--------------~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK--------------VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTH  194 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE--------------EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE--------------EEEeecc-CCCCc-eeEecCCCcEEEEecCCCc
Confidence            467789999999977777777899999988664              2222222 22333 89999999877777655  


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      .|.+++...+.
T Consensus       195 ~I~~~d~~~~~  205 (409)
T 3hrp_A          195 TVYVYMKASGW  205 (409)
T ss_dssp             EEEEEEGGGTT
T ss_pred             eEEEEEcCCCc
Confidence            78888876543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.80  E-value=0.021  Score=36.19  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             ceEEEEEecCCCEEEEE-ecCCcEEEEEcC--CC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         16 KVNCLAWHQNQGWIAVG-GDDGLLKVLKLD--TG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~-~~~~~v~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ....++|+|+++.+..+ ..++.|.+|+..  .+ ...         .......+.........+++.++|.++++...+
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence            45678999999876544 456789999975  33 100         000111222233456788999999887777667


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      +.|..|+. +++.
T Consensus       251 ~~v~~~d~-~g~~  262 (326)
T 2ghs_A          251 GAVDRYDT-DGNH  262 (326)
T ss_dssp             TEEEEECT-TCCE
T ss_pred             CEEEEECC-CCCE
Confidence            78999988 4544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.78  E-value=0.036  Score=33.88  Aligned_cols=73  Identities=8%  Similarity=-0.024  Sum_probs=53.6

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ...+.++++.++|...++...++.|.+++.. ...             ...........+..+++.+++.++++...++.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~   84 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-------------KEFEVPTPDAKVMCLIVSSLGDIWFTENGANK   84 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-------------EEEECCCCCCcceeEEECCCCCEEEEecCCCe
Confidence            4578899999999977776677889999877 430             11112223356889999999998877777788


Q ss_pred             EEEEeCC
Q psy11100         94 IIVWMLY  100 (110)
Q Consensus        94 i~~w~~~  100 (110)
                      |..+|..
T Consensus        85 v~~~d~~   91 (300)
T 2qc5_A           85 IGKLSKK   91 (300)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            9988876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.78  E-value=0.0026  Score=41.61  Aligned_cols=77  Identities=8%  Similarity=-0.236  Sum_probs=52.9

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEe----------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------C
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGG----------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------S   70 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   70 (110)
                      ++..+.. +  .+.++||++.+..++          .++.|.++|..+..              ....+...       .
T Consensus        61 ~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--------------vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           61 HSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--------------EEEEEEETTSCSCCBS
T ss_pred             EEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--------------EEEEEECCCccccccC
Confidence            3444443 3  689999999877775          36789999999876              44444321       1


Q ss_pred             CCeEEEEEcCCCCeEEEecC--CCcEEE--EeCCC
Q psy11100         71 GKVRAIIWNEQYEKLTSSDE--TGLIIV--WMLYK  101 (110)
Q Consensus        71 ~~v~~~~~s~~~~~l~s~~~--~~~i~~--w~~~~  101 (110)
                      .....++++|+|++++.+..  +..+.+  +|..+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            23457899999998776653  456888  88755

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.71  E-value=0.023  Score=36.27  Aligned_cols=80  Identities=9%  Similarity=-0.105  Sum_probs=53.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEec-----CCcEEEEEcCCCCCcCCcccccccceeeeEEeec------cCCCeEEEEEcC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGD-----DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG------HSGKVRAIIWNE   80 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~   80 (110)
                      ++...+..++++++|++.++-..     +..|.+||+.++.              ....+..      +...+..+++++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--------------~~~~~~~~~~~~~~~~~~~~v~vd~  129 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--------------LSRVIYLPPPITLSNSFVNDLAVDL  129 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--------------EEEEEECCTTTSCTTCCCCEEEEET
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--------------EEEEEECChhhcccccccceEEEec
Confidence            34567899999999886555433     4688999988664              2232321      224567899998


Q ss_pred             CCCe-EEEec---CCCcEEEEeCCCCCCh
Q psy11100         81 QYEK-LTSSD---ETGLIIVWMLYKCNDD  105 (110)
Q Consensus        81 ~~~~-l~s~~---~~~~i~~w~~~~~~~~  105 (110)
                      ++.. +++-.   .++.|.+||+.+++..
T Consensus       130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~  158 (343)
T 2qe8_A          130 IHNFVYISDPAPDDKAALIRVDLQTGLAA  158 (343)
T ss_dssp             TTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred             CCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence            6544 55544   5788999999877643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.68  E-value=0.044  Score=33.48  Aligned_cols=72  Identities=13%  Similarity=-0.037  Sum_probs=51.4

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ..+..+++.++|...++...++.|..+|.. +.            . ...........+..+++.+++.++++...++.|
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~------------~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  127 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG------------F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRI  127 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC------------E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CC------------e-EEecCCCCCCCCccceECCCCCEEEEccCCCeE
Confidence            568889999999877766667788888877 43            0 111122233568899999999988777767888


Q ss_pred             EEEeCC
Q psy11100         95 IVWMLY  100 (110)
Q Consensus        95 ~~w~~~  100 (110)
                      ..++..
T Consensus       128 ~~~~~~  133 (300)
T 2qc5_A          128 GKLTAD  133 (300)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            888876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.57  E-value=0.016  Score=38.26  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=52.1

Q ss_pred             EEEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100         19 CLAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS   87 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s   87 (110)
                      .++++|++..+.....          .+.|.+.|..+..              .+..+.-- ..+..++++++++ .|+.
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--------------v~~~i~vg-~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------------RLAKFEMG-HEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEEEE-EEECEEEECSSSSCEEEE
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe--------------EEEEEECC-CCcceEEECCCCCeEEEE
Confidence            3666888776655432          2457788888776              44444321 3567899999997 5554


Q ss_pred             -ecCCCcEEEEeCCCCCChhhhh
Q psy11100         88 -SDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        88 -~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                       ...++.|.++|..+++.+..++
T Consensus       349 tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          349 LSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEC
T ss_pred             EcCCCCeEEEEECCCCcEEEEec
Confidence             4568999999999998776553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.40  E-value=0.073  Score=35.01  Aligned_cols=69  Identities=13%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             ceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc---------------CCCeEEEEEc
Q psy11100         16 KVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---------------SGKVRAIIWN   79 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~s   79 (110)
                      ....++++|+|.+.++-. .++.|+.|+...+.               +.++.++               -.....++++
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~---------------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd  388 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY---------------VSTVAGQVDVASQIDGTPLEATFNYPYDICYD  388 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTE---------------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE---------------EEEEeCCCCCCCcCCCChhceEeCCceEEEEc
Confidence            467899999999777766 67889999965543               1222221               2457899999


Q ss_pred             CCCCeEEEecCCCcEEEEeC
Q psy11100         80 EQYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        80 ~~~~~l~s~~~~~~i~~w~~   99 (110)
                      +++.++++-..++.|+.+.+
T Consensus       389 ~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          389 GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEECCCCeEEEEEe
Confidence            99888888888888887765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.21  E-value=0.03  Score=34.95  Aligned_cols=32  Identities=9%  Similarity=0.067  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCeEEEecCC------CcEEEEeCCCC
Q psy11100         71 GKVRAIIWNEQYEKLTSSDET------GLIIVWMLYKC  102 (110)
Q Consensus        71 ~~v~~~~~s~~~~~l~s~~~~------~~i~~w~~~~~  102 (110)
                      ...+.++|+|++..+..+...      +.|..|++..+
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            456789999999976655543      68999987643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.16  E-value=0.014  Score=41.33  Aligned_cols=72  Identities=13%  Similarity=0.213  Sum_probs=46.2

Q ss_pred             ceEEEEEe-cCCCEEEEEec-CC----cEEEEEcCCC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         16 KVNCLAWH-QNQGWIAVGGD-DG----LLKVLKLDTG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        16 ~v~~~~~~-p~~~~l~~~~~-~~----~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      .+...+|| |||+.++.+.. +|    .|+++|+..+ .    ..         ...+.   .....++|+|+|+.|+..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~----~l---------~~~~~---~~~~~~~WspDg~~l~y~  238 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ----TI---------ADKVS---GTNGEIVWGPDHTSLFYV  238 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC----CC---------CCCEE---EECSCCEECSSTTEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE----eC---------Ccccc---CceeeEEEecCCCEEEEE
Confidence            57789999 99998876543 33    4899998876 4    00         00111   112468899999876655


Q ss_pred             cCC-----CcEEEEeCCCCC
Q psy11100         89 DET-----GLIIVWMLYKCN  103 (110)
Q Consensus        89 ~~~-----~~i~~w~~~~~~  103 (110)
                      ..+     ..|..+++.++.
T Consensus       239 ~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          239 TKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EECTTCCEEEEEEEETTSCG
T ss_pred             EECCCCCCCEEEEEECCCCc
Confidence            433     257777877654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.01  E-value=0.083  Score=37.03  Aligned_cols=74  Identities=14%  Similarity=0.062  Sum_probs=47.3

Q ss_pred             EEEEEecCCCEEEEEecCCc-------------EEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCC
Q psy11100         18 NCLAWHQNQGWIAVGGDDGL-------------LKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYE   83 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~-------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~   83 (110)
                      ..++|+ ||+.|+.+..+..             |++|++.....+  .        ..+..... +...+..+.|+|+|+
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--~--------~~v~~~~~~~~~~~~~~~~SpDg~  246 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED--D--------RLVFGAIPAQHHRYVGATVTEDDR  246 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG--C--------EEEESCSGGGCCSEEEEEECTTSC
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc--c--------eEEEecCCCCCeEEEEEEEcCCCC
Confidence            457899 9998888877643             888887754300  0        01222222 334567899999999


Q ss_pred             eEE-Eec---CCCcEEEEeCCCC
Q psy11100         84 KLT-SSD---ETGLIIVWMLYKC  102 (110)
Q Consensus        84 ~l~-s~~---~~~~i~~w~~~~~  102 (110)
                      .++ +..   .++.|+++|+.++
T Consensus       247 ~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          247 FLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEEEEccCCCCcEEEEEECCCC
Confidence            854 333   2357899998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.75  E-value=0.087  Score=32.98  Aligned_cols=73  Identities=8%  Similarity=-0.117  Sum_probs=49.9

Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-----CCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         21 AWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-----SGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        21 ~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      .+++||..+..+..++.+.++|..+..              ....+.-.     -...+.+.|. ++..++....++.|.
T Consensus       111 glt~Dg~~l~vs~gs~~l~viD~~t~~--------------v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          111 GLATDGKILYGSDGTSILYEIDPHTFK--------------LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EEEECSSSEEEECSSSEEEEECTTTCC--------------EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEECCCEEEEECCCCeEEEEECCCCc--------------EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence            356677766666667788888887654              23333321     1236677887 777777777788999


Q ss_pred             EEeCCCCCChhhh
Q psy11100         96 VWMLYKCNDDDEW  108 (110)
Q Consensus        96 ~w~~~~~~~~~~~  108 (110)
                      +.|+.+++.+..+
T Consensus       176 vID~~tg~V~~~I  188 (266)
T 2iwa_A          176 RISAKDGTLLGWI  188 (266)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            9999998875443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.48  E-value=0.24  Score=30.98  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC--
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG--   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~--   92 (110)
                      .....++|+++|++.++-...+.|..++.....               ..... .......+++.++|.++++.....  
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---------------~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---------------QIHAT-VEGKVSGLAFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---------------EEEEE-CSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---------------EEEEe-CCCCceeEEEcCCCcEEEEeccCCcc
Confidence            456788999999866666567788888765432               11121 224578899999998765543322  


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      .|..++..+++
T Consensus        96 ~v~~~d~~~g~  106 (306)
T 2p4o_A           96 PVVSLVKSDGT  106 (306)
T ss_dssp             EEEEEECTTSC
T ss_pred             eEEEEcCCCCe
Confidence            36666666655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.41  E-value=0.11  Score=36.85  Aligned_cols=72  Identities=10%  Similarity=-0.039  Sum_probs=44.1

Q ss_pred             EEEEecCCCEEEEEecCC-----cEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeEEEec---
Q psy11100         19 CLAWHQNQGWIAVGGDDG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKLTSSD---   89 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~---   89 (110)
                      .+.|+|||+.|+....+.     .|.++++.....   .         ....+. ........+.|||+|+.|+...   
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~---~---------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~  292 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS---E---------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP  292 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG---G---------CEEEEECCCTTCEEEEEECTTSSEEEEEEECS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch---h---------cEEEEecCCCceEEEEEECCCCCEEEEEecCC
Confidence            578999998887776542     466666654320   0         011122 2223456789999999865443   


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      ....|.++|+.++
T Consensus       293 ~~~~l~~~d~~~~  305 (751)
T 2xe4_A          293 ETAEVHLLDLRKG  305 (751)
T ss_dssp             SCEEEEEEESSSC
T ss_pred             CCceEEEEECCCC
Confidence            2345888888765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.39  E-value=0.045  Score=38.53  Aligned_cols=32  Identities=9%  Similarity=-0.028  Sum_probs=26.0

Q ss_pred             EEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        77 ~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      .+...+.++..++.|+.|+.||.++|+.+.++
T Consensus       481 ~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          481 TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceECCCEEEEECCCCcEEEEECCCCccceee
Confidence            44556778888889999999999999887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.32  E-value=0.22  Score=33.57  Aligned_cols=83  Identities=6%  Similarity=0.098  Sum_probs=53.7

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec------cCCCeEEEEEcCC---CCeEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG------HSGKVRAIIWNEQ---YEKLT   86 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~---~~~l~   86 (110)
                      .+..+..+|+|.+||..+ +..|.+..+......... .......+. +.+.-      ....|..+.|+|.   +..++
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~-~~~~~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV  143 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVED-VSIQDAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV  143 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCC-HHHHHTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcc-cccccccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence            567789999999998875 457888888843211110 000011111 11211      2467999999996   44688


Q ss_pred             EecCCCcEEEEeCCC
Q psy11100         87 SSDETGLIIVWMLYK  101 (110)
Q Consensus        87 s~~~~~~i~~w~~~~  101 (110)
                      .-..|+.|++||+..
T Consensus       144 VLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          144 VLKEDDTITMFDILN  158 (452)
T ss_dssp             EEETTSCEEEEETTC
T ss_pred             EEecCCEEEEEEccc
Confidence            888999999999986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.29  E-value=0.089  Score=35.56  Aligned_cols=76  Identities=16%  Similarity=0.080  Sum_probs=51.2

Q ss_pred             ceEEEEEecCCCEEEEEecC------CcEEEEEcCCCCCcCCcccccccceeeeEEeecc---CCCeEEEEEcCCCCeEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~   86 (110)
                      ....+.+.|+| .+++...+      +.+.+.|..+..              ...++...   ...-..+.|+|+++.++
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~--------------v~~~~~~~~~~~~~~Yd~~~~p~~~~mv  203 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE--------------PLGKWEIDRGDQYLAYDFWWNLPNEVLV  203 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC--------------EEEECCSBCTTCCCCCCEEEETTTTEEE
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe--------------EEEEEccCCCCccccceEEECCCCCEEE
Confidence            34456788999 65555444      578888888765              44444321   12234688899999887


Q ss_pred             Eec-------------------CCCcEEEEeCCCCCChh
Q psy11100         87 SSD-------------------ETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        87 s~~-------------------~~~~i~~w~~~~~~~~~  106 (110)
                      ++.                   ....|.+||+.+++.+.
T Consensus       204 sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          204 SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             EccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            774                   36789999998765443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.26  E-value=0.16  Score=31.94  Aligned_cols=70  Identities=6%  Similarity=-0.132  Sum_probs=47.0

Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-----CCCeEEEEEcCCCCeEEEecCCCcEEEE
Q psy11100         23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-----SGKVRAIIWNEQYEKLTSSDETGLIIVW   97 (110)
Q Consensus        23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~~~~i~~w   97 (110)
                      ++++..|..+..++.+.++|..+..              ....+...     -..++.+.|. +|+.++....+..|.+.
T Consensus       142 t~Dg~~L~vSdGs~~l~~iDp~T~~--------------v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          142 CYWNGKLVRSDGGTMLTFHEPDGFA--------------LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEETTEEEEECSSSEEEEECTTTCC--------------EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             ecCCCEEEEECCCCEEEEEcCCCCe--------------EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            3566666666666777777776654              23333321     1245677776 77778888788899999


Q ss_pred             eCCCCCChhh
Q psy11100         98 MLYKCNDDDE  107 (110)
Q Consensus        98 ~~~~~~~~~~  107 (110)
                      |+.+++.+..
T Consensus       207 Dp~TG~V~~~  216 (268)
T 3nok_A          207 DPATGTVVGV  216 (268)
T ss_dssp             CTTTCBEEEE
T ss_pred             eCCCCcEEEE
Confidence            9999987654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.25  E-value=0.041  Score=38.32  Aligned_cols=82  Identities=7%  Similarity=-0.017  Sum_probs=51.6

Q ss_pred             ceEEEEEecCCCEEEEE-ecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         16 KVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~-~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ...++.++|||+++... ..+..+.++|+.+.... .+..... ..  ..... .-......++|+|+|....+.-.+++
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~-~~--v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR-SA--VVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG-GG--EEECC-BCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc-cc--eEEEc-CCCCCcceEEECCCCeEEEEEecCCc
Confidence            34568899999976555 45778999999854200 0000000 00  11111 12345778999999944667778999


Q ss_pred             EEEEeCCC
Q psy11100         94 IIVWMLYK  101 (110)
Q Consensus        94 i~~w~~~~  101 (110)
                      |.+||+.+
T Consensus       354 V~kwdi~~  361 (595)
T 1fwx_A          354 VVKWNIED  361 (595)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEEhhH
Confidence            99999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.14  E-value=0.045  Score=38.49  Aligned_cols=34  Identities=6%  Similarity=-0.091  Sum_probs=26.6

Q ss_pred             EEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         75 AIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        75 ~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ...+...+..++.++.++.+++||.++|+.+.++
T Consensus       481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            3345567777777889999999999999877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.03  E-value=0.14  Score=32.01  Aligned_cols=35  Identities=11%  Similarity=0.024  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         72 KVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        72 ~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      .++.+.|. +|+.++....+..|.+.|+.+++.+..
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            34567776 677788887888999999999987644

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.96  E-value=0.36  Score=30.17  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=27.3

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEec--CCcEEEEEcCCCC
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGD--DGLLKVLKLDTGK   47 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~--~~~v~~~~~~~~~   47 (110)
                      +++.+......-+.|+|++.+..+.+.  ++.|.+.|..++.
T Consensus        14 ~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~   55 (266)
T 2iwa_A           14 EFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK   55 (266)
T ss_dssp             EEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC
T ss_pred             EEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC
Confidence            344443345678999998765555443  5789999998876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.80  E-value=0.28  Score=30.30  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC-----CCeEEEEEcCCCCeEEEecCCCcEEEE
Q psy11100         23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-----GKVRAIIWNEQYEKLTSSDETGLIIVW   97 (110)
Q Consensus        23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~~~~i~~w   97 (110)
                      .+++..|..+..++.+.++|..+..              ....+....     ..++.+.|. +|+.++....+..|.+.
T Consensus       111 t~dg~~L~vSdgs~~l~~iDp~t~~--------------~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          111 TSDDSHLYMSDGTAVIRKLDPDTLQ--------------QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EECSSCEEEECSSSEEEEECTTTCC--------------EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             eeCCCEEEEECCCCeEEEEeCCCCe--------------EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            4566656666666778887777654              233333211     345566665 67777777778899999


Q ss_pred             eCCCCCChhh
Q psy11100         98 MLYKCNDDDE  107 (110)
Q Consensus        98 ~~~~~~~~~~  107 (110)
                      |+++|+.+..
T Consensus       176 Dp~tG~V~~~  185 (243)
T 3mbr_X          176 DPASGKVVAW  185 (243)
T ss_dssp             CTTTCBEEEE
T ss_pred             ECCCCCEEEE
Confidence            9999887644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.77  E-value=0.22  Score=33.70  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=46.6

Q ss_pred             EEEEEecCCCEEEEEe-------------------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEE
Q psy11100         18 NCLAWHQNQGWIAVGG-------------------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAI   76 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~   76 (110)
                      ..+-|+|+++.+++..                   .+..|.+||+....              ...++.-  .......+
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--------------~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--------------RIHSLTLGEENRMALEL  256 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--------------EEEEEESCTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--------------EeeEEecCCCCCcccee
Confidence            3577899999888774                   36789999998764              3344433  11234556


Q ss_pred             EE--cCCCCe-EEEec-----CCCcEEEEeCCC
Q psy11100         77 IW--NEQYEK-LTSSD-----ETGLIIVWMLYK  101 (110)
Q Consensus        77 ~~--s~~~~~-l~s~~-----~~~~i~~w~~~~  101 (110)
                      +|  +|++.. ++.+.     .+++|.+|....
T Consensus       257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             EECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             EeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence            56  999998 44555     677887765543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.43  E-value=0.43  Score=29.98  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=23.6

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK   47 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~   47 (110)
                      .....+.|+ ++.+..+.+.++.|+++|+.+++
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk   86 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ   86 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCc
Confidence            344667776 35666777778889999998876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=94.33  E-value=0.21  Score=31.74  Aligned_cols=64  Identities=2%  Similarity=-0.057  Sum_probs=44.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEecCCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSSDETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~~~   92 (110)
                      +....++++++|.+.++...++.|.+|+...+.              ....... +-.....+++.+++.++++.+..+
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~--------------~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRA--------------YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE--------------EEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECCCCC--------------EEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            345568899999988888888899999984343              1111222 245678999999998877766443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.21  E-value=0.0083  Score=38.88  Aligned_cols=70  Identities=9%  Similarity=0.006  Sum_probs=35.6

Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC---CeEEEecCCCcEEEE
Q psy11100         21 AWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY---EKLTSSDETGLIIVW   97 (110)
Q Consensus        21 ~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~~~~i~~w   97 (110)
                      .++|++..++.++.++.+..||..++.              ..-.+....  .....++.+.   ..++.++.++.+..|
T Consensus       125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~--------------~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~  188 (369)
T 2hz6_A          125 SLSPSTSLLYLGRTEYTITMYDTKTRE--------------LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTV  188 (369)
T ss_dssp             --------EEEEEEEEEEECCCSSSSS--------------CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred             cccccCCEEEEEecCCEEEEEECCCCC--------------EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEE
Confidence            345566667777777888888877654              111111000  1112222221   345567778999999


Q ss_pred             eCCCCCChh
Q psy11100         98 MLYKCNDDD  106 (110)
Q Consensus        98 ~~~~~~~~~  106 (110)
                      |..+|+.+.
T Consensus       189 d~~tG~~~W  197 (369)
T 2hz6_A          189 DSESGDVLW  197 (369)
T ss_dssp             CTTTCCEEE
T ss_pred             ECCCCcEEE
Confidence            998887643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.38  E-value=0.86  Score=28.50  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=22.8

Q ss_pred             ceEEEEEecCCCEEEEEecCC--cEEEEEcCCCC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTGK   47 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~--~v~~~~~~~~~   47 (110)
                      ....+.|+ ++.+..+.+.+|  .|+++|+.++.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk   76 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK   76 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCc
Confidence            34678888 676666666665  79999998876

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.91  E-value=1.4  Score=29.74  Aligned_cols=80  Identities=14%  Similarity=0.237  Sum_probs=50.7

Q ss_pred             CCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE--e
Q psy11100         14 NTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS--S   88 (110)
Q Consensus        14 ~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~   88 (110)
                      .++|..+.|+|-   +..|++-..|+.|++||+....+.+...+...    ..+........|.+++|..++--|..  .
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~  199 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPN----NSFGLDARVNDITDLEFSKDGLTLYCLNT  199 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCC----SEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccc----cccCCCcccceEEEEEEcCCCcEEEEEec
Confidence            578999999994   56888989999999999997432111111000    01122233467889999886554554  4


Q ss_pred             cCCCcEEEE
Q psy11100         89 DETGLIIVW   97 (110)
Q Consensus        89 ~~~~~i~~w   97 (110)
                      ...|.|+-.
T Consensus       200 t~~GDIYAl  208 (452)
T 3pbp_A          200 TEGGDIFAF  208 (452)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCCEEEE
Confidence            466776643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.52  E-value=1.5  Score=29.04  Aligned_cols=70  Identities=13%  Similarity=-0.028  Sum_probs=44.8

Q ss_pred             eEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCe-EEEecCCCc
Q psy11100         17 VNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEK-LTSSDETGL   93 (110)
Q Consensus        17 v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-l~s~~~~~~   93 (110)
                      ...++++| +|.+.++-...+.|..++.....              ...... ........++|+|++.. +++-...+.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~--------------~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQE--------------TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTE--------------EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------------EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            44567888 67766665556778888776543              101111 11234678999999994 556566788


Q ss_pred             EEEEeCC
Q psy11100         94 IIVWMLY  100 (110)
Q Consensus        94 i~~w~~~  100 (110)
                      |..++..
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            8888765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.28  E-value=1.3  Score=30.82  Aligned_cols=74  Identities=8%  Similarity=-0.054  Sum_probs=45.0

Q ss_pred             EEEEec-CCCEEEEEecCC-----------cEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeE
Q psy11100         19 CLAWHQ-NQGWIAVGGDDG-----------LLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus        19 ~~~~~p-~~~~l~~~~~~~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l   85 (110)
                      ..++.| +++.++.|+.+.           .+.+||.....            +..+.... .+.......++..++.++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------------w~~~~~~~~~~~~~~~~~~~~~~g~ly  257 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------------VSDRTVTVTKHDMFCPGISMDGNGQIV  257 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC------------BCCCEEEECSCCCSSCEEEECTTSCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc------------EEeCcccCCCCCCccccccCCCCCCEE
Confidence            445666 777777776432           46677776543            11111121 122233456777889998


Q ss_pred             EEec-CCCcEEEEeCCCCCC
Q psy11100         86 TSSD-ETGLIIVWMLYKCND  104 (110)
Q Consensus        86 ~s~~-~~~~i~~w~~~~~~~  104 (110)
                      +.++ .+..+.+||+.++.+
T Consensus       258 v~GG~~~~~v~~yd~~t~~W  277 (656)
T 1k3i_A          258 VTGGNDAKKTSLYDSSSDSW  277 (656)
T ss_dssp             EECSSSTTCEEEEEGGGTEE
T ss_pred             EeCCCCCCceEEecCcCCce
Confidence            8887 456799999887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.04  E-value=1.7  Score=30.52  Aligned_cols=31  Identities=3%  Similarity=-0.048  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCe-EEEecCCCcEEEEeCCCC
Q psy11100         72 KVRAIIWNEQYEK-LTSSDETGLIIVWMLYKC  102 (110)
Q Consensus        72 ~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~  102 (110)
                      ...++.++|||++ +++...+..+.++|+.+.
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            4457899999998 555567889999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=90.82  E-value=1.9  Score=26.88  Aligned_cols=30  Identities=10%  Similarity=-0.087  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCe-EEEecCCCcEEEEeCCC
Q psy11100         72 KVRAIIWNEQYEK-LTSSDETGLIIVWMLYK  101 (110)
Q Consensus        72 ~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~  101 (110)
                      ..+.++|+|++.. +++-...+.|..+++..
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            3457899999985 44545668899998875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=89.57  E-value=4.2  Score=28.76  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             EEEEecCCCEEEEEecCC-------------------cEEEEEcCCCCCcCCcccccccceeeeEEee--ccC-------
Q psy11100         19 CLAWHQNQGWIAVGGDDG-------------------LLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHS-------   70 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------   70 (110)
                      .++++|++..+..+..++                   .|..+|..++.              ..-.+.  .|.       
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--------------~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--------------YVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--------------EEEEEESSTTCCSCCCCC
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--------------eeEeeecCCcccccccCC
Confidence            467888888877777665                   38888988876              221221  121       


Q ss_pred             CCeEEEEEcCCCC---eEEEecCCCcEEEEeCCCCCCh
Q psy11100         71 GKVRAIIWNEQYE---KLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        71 ~~v~~~~~s~~~~---~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      ..........+|.   .++.++.+|.++++|..+|+.+
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            1222223333554   5788889999999999999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.14  E-value=0.81  Score=31.55  Aligned_cols=28  Identities=4%  Similarity=-0.173  Sum_probs=21.6

Q ss_pred             CCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         81 QYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      .+..+..++.++.|..+|.++|+.+.++
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            4556666788999999999999876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=88.28  E-value=3.5  Score=29.05  Aligned_cols=77  Identities=13%  Similarity=0.067  Sum_probs=47.8

Q ss_pred             EEEEecCCCEEEEEecCC-------------------cEEEEEcCCCCCcCCcccccccceeeeEEeeccC-------CC
Q psy11100         19 CLAWHQNQGWIAVGGDDG-------------------LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-------GK   72 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   72 (110)
                      .++++|++..+..+..++                   .|..+|..++..            ........|.       ..
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~------------~W~~~~~~~d~wd~~~~~~  314 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY------------KWHYQETPGDNWDYTSTQP  314 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE------------EEEEESSTTCCSCCCCCSC
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE------------EEEEecCCCcccccccCCC
Confidence            467888888777666543                   477788877650            0111111121       12


Q ss_pred             eEEEEEcCCC---CeEEEecCCCcEEEEeCCCCCChhh
Q psy11100         73 VRAIIWNEQY---EKLTSSDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        73 v~~~~~s~~~---~~l~s~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ...+....+|   ..++.++.+|.+.++|..+|+.+..
T Consensus       315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence            2233334467   5688888999999999999987543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=86.91  E-value=3.2  Score=25.58  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=14.8

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~   44 (110)
                      .++...+++. +..+..++.+..+|..
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence            3344454555 4445556777777766

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=86.47  E-value=4.2  Score=25.30  Aligned_cols=32  Identities=9%  Similarity=0.040  Sum_probs=24.2

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~   46 (110)
                      .....++++++|..+.++..++.|..|+....
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~   50 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS   50 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTT
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC
Confidence            34566889999987777777888888877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.44  E-value=1.6  Score=26.91  Aligned_cols=75  Identities=4%  Similarity=-0.097  Sum_probs=42.4

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-CCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-SGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ..+.+++|+|+|.+-+.  .++.+.-.+..+..   ...=..     ....+... -.....+.|.|+|.+.++  .|+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~---~~~W~~-----s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~  108 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHD---NDNWMG-----RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDK  108 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCST---TCCHHH-----HCEEEECSCGGGCSEEEECTTSCEEEE--ETTE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCC---cccccc-----cccEecccccccceEEEECCCCCEEEe--CCCE
Confidence            46779999999996666  56665544433211   000000     01112111 111467888999998777  4588


Q ss_pred             EEEEeCCC
Q psy11100         94 IIVWMLYK  101 (110)
Q Consensus        94 i~~w~~~~  101 (110)
                      |+-++..+
T Consensus       109 iyr~~pP~  116 (236)
T 1tl2_A          109 LYKASPPQ  116 (236)
T ss_dssp             EEEESCCC
T ss_pred             EEEeCCCc
Confidence            88887644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.36  E-value=1  Score=33.13  Aligned_cols=35  Identities=14%  Similarity=0.063  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100         72 KVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        72 ~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      .+.+++..++..++.+.+.|+.+++|++.+++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence            46777788888899999999999999999987654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.16  E-value=4  Score=24.64  Aligned_cols=71  Identities=11%  Similarity=0.043  Sum_probs=43.8

Q ss_pred             eEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCCcE
Q psy11100         17 VNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~~i   94 (110)
                      +..++++|++..+. +-...+.|..++.....              ........-.....+++.+++.. +++-...+.|
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--------------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I  103 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI  103 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCC--------------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEE
Confidence            45788898765544 44446788888886543              11112222245678889887554 4455556788


Q ss_pred             EEEeCCC
Q psy11100         95 IVWMLYK  101 (110)
Q Consensus        95 ~~w~~~~  101 (110)
                      .++++..
T Consensus       104 ~~~~~~g  110 (267)
T 1npe_A          104 EVAKMDG  110 (267)
T ss_dssp             EEEETTS
T ss_pred             EEEEcCC
Confidence            8888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=86.04  E-value=4.4  Score=25.02  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CCceEEEEEecCCCEEEEEecCC--cEEEEEcCCCC
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTGK   47 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~--~v~~~~~~~~~   47 (110)
                      .+...-+.|++ +.+..+.+..|  .|+.+|+.++.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk   54 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR   54 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC
Confidence            34566788886 56555655543  79999998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.91  E-value=4.8  Score=28.09  Aligned_cols=74  Identities=9%  Similarity=-0.025  Sum_probs=44.7

Q ss_pred             EEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC-----
Q psy11100         19 CLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET-----   91 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~-----   91 (110)
                      ..++.+++..++.|+. +..+.+||.....            +........... -..++.-+++.+++.++ .+     
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~------------W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS------------WIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFE  313 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTE------------EEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCc------------eeECCCCCcccc-ccceEEecCCeEEEEeCcccCCccc
Confidence            4566778888888874 4578888887543            111111111111 12344556888888777 33     


Q ss_pred             CcEEEEeCCCCCCh
Q psy11100         92 GLIIVWMLYKCNDD  105 (110)
Q Consensus        92 ~~i~~w~~~~~~~~  105 (110)
                      ..+.+||+.++.+.
T Consensus       314 ~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          314 KNGEVYSPSSKTWT  327 (656)
T ss_dssp             CCEEEEETTTTEEE
T ss_pred             ccceEeCCCCCcce
Confidence            56899999887653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=84.03  E-value=6.1  Score=25.03  Aligned_cols=22  Identities=32%  Similarity=0.509  Sum_probs=16.4

Q ss_pred             CCEEEEEecCCcEEEEEcCCCC
Q psy11100         26 QGWIAVGGDDGLLKVLKLDTGK   47 (110)
Q Consensus        26 ~~~l~~~~~~~~v~~~~~~~~~   47 (110)
                      +..+..++.++.|..+|..++.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~   74 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGK   74 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEEccCCc
Confidence            4456677778889989987765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=83.34  E-value=7.8  Score=25.71  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             EEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-ee-ccCCCeEEEEEcCCCCe-EEEecCCCc
Q psy11100         18 NCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQ-GHSGKVRAIIWNEQYEK-LTSSDETGL   93 (110)
Q Consensus        18 ~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~-l~s~~~~~~   93 (110)
                      ..++++| +|.+.++-..++.|+.++...+.              .... .. .....-..++|+|++.. +++-...+.
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--------------~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGT--------------LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCC--------------EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCe--------------EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            3466777 56655444445667777665443              1011 11 11222346999999984 555556788


Q ss_pred             EEEEeCC
Q psy11100         94 IIVWMLY  100 (110)
Q Consensus        94 i~~w~~~  100 (110)
                      |..+++.
T Consensus       297 I~~~~~d  303 (433)
T 4hw6_A          297 IYRVDYN  303 (433)
T ss_dssp             EEEEEBC
T ss_pred             EEEEeCC
Confidence            9887765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=83.28  E-value=1.7  Score=30.12  Aligned_cols=28  Identities=4%  Similarity=-0.052  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100         81 QYEKLTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      .+..+..++.|+.|+.+|.++|+.+.++
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            3566666888999999999999876554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=82.68  E-value=10  Score=26.65  Aligned_cols=75  Identities=17%  Similarity=0.183  Sum_probs=45.8

Q ss_pred             EEEEecCCCEEEEEecCC-------------------cEEEEEcCCCCCcCCcccccccceeeeEEeeccC-------CC
Q psy11100         19 CLAWHQNQGWIAVGGDDG-------------------LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-------GK   72 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   72 (110)
                      ..++.|++..+..+..++                   .|..+|..++..            ........|.       ..
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~------------~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL------------AWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE------------EEEEESSTTCCSCCCCCSC
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce------------eeEeecCCCccccccCCCC
Confidence            367888777777766554                   377788877750            0111111121       22


Q ss_pred             eEEEEEcCCCC---eEEEecCCCcEEEEeCCCCCCh
Q psy11100         73 VRAIIWNEQYE---KLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        73 v~~~~~s~~~~---~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      .....+..+|.   .++.++.+|.+.++|..+|+.+
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            22233334665   4778889999999999998865

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=80.93  E-value=7  Score=23.52  Aligned_cols=72  Identities=7%  Similarity=-0.031  Sum_probs=42.7

Q ss_pred             CceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCe-EEEec
Q psy11100         15 TKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEK-LTSSD   89 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-l~s~~   89 (110)
                      .....++++|++..+..+..   .+.|..++.....               ...+. ..-.....+++++++.. +++-.
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---------------~~~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---------------RRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---------------CEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---------------cEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            45677889996554444333   3567677665432               11111 22245678899987665 44555


Q ss_pred             CCCcEEEEeCCC
Q psy11100         90 ETGLIIVWMLYK  101 (110)
Q Consensus        90 ~~~~i~~w~~~~  101 (110)
                      ..+.|.++++..
T Consensus       187 ~~~~I~~~~~~g  198 (267)
T 1npe_A          187 GTHRAECLNPAQ  198 (267)
T ss_dssp             TTTEEEEEETTE
T ss_pred             CCCEEEEEecCC
Confidence            567888888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=80.88  E-value=9.2  Score=24.84  Aligned_cols=74  Identities=11%  Similarity=0.023  Sum_probs=47.7

Q ss_pred             ceEEEEEecCCCEEEEEecC-CcEEEEEcCCCCCcCCcccccccceeeeE-Ee--eccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD-GLLKVLKLDTGKESTGQVAAANVNLAMNQ-SL--QGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ....++..++|+.-++++.. +.|...+.....            ..... ..  .......+.++++|+|..|+.....
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~------------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~  205 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKT------------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP  205 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSCC------------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE------------EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC
Confidence            47789999999987777766 665544444322            00000 00  1112235689999999987777669


Q ss_pred             CcEEEEeCCC
Q psy11100         92 GLIIVWMLYK  101 (110)
Q Consensus        92 ~~i~~w~~~~  101 (110)
                      +.|..+|+.+
T Consensus       206 g~L~~fD~~~  215 (334)
T 2p9w_A          206 RALTAFDVSK  215 (334)
T ss_dssp             SSEEEEECSS
T ss_pred             CeEEEEcCCC
Confidence            9999999774

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.69  E-value=5.8  Score=29.34  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~   46 (110)
                      .+.++...++..++.+-+.|+.+|+|++.++
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~  267 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN  267 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence            5677778888889999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 6e-09
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           ++C AW++++  IA+  ++  + + +    K                  L+ H+G+V  +
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGV 57

Query: 77  IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
            W     ++ +        VW L         
Sbjct: 58  DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 14/86 (16%)

Query: 12  PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
                +  +++ ++   +  G DD    V        +                L GH  
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--------------GVLAGHDN 313

Query: 72  KVRAIIWNEQYEKLTSSDETGLIIVW 97
           +V  +   +    + +      + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 4e-07
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + +H    +I    DD  L+V      +                ++L  H   V ++
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--------------KTLNAHEHFVTSL 295

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
            +++    + +      + VW
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
          V  + +H     +    +D  +KV   +TG                 ++L+GH+  V+ I
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKGHTDSVQDI 65

Query: 77 IWNEQY 82
           ++   
Sbjct: 66 SFDHSG 71

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 14/96 (14%)

Query: 2   FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLA 61
           +   S   +I   T        +   ++  G  D  +K+  + TG               
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL------------ 240

Query: 62  MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
              +L GH   VR ++++   + + S  +   + VW
Sbjct: 241 --MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 7e-06
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 20/91 (21%)

Query: 13  NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
           +   V  +A  QN  +I  G  D  +      +G                   LQGH   
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------------LLMLQGHRNS 352

Query: 73  VRAI------IWNEQYEKLTSSDETGLIIVW 97
           V ++          +Y    +        +W
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 6e-05
 Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  + + ++   +  G  D  +K+  L      +      +       +  GH   V ++
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT--CEVTYIGHKDFVLSV 314

Query: 77  IWNEQYEKLTSSDETGLIIVW 97
              +  E + S  +   ++ W
Sbjct: 315 ATTQNDEYILSGSKDRGVLFW 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 1e-04
 Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 15/80 (18%)

Query: 18  NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
             L +     W    G D LL   +   G                       S  V +  
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------IFQSKESSSVLSCD 313

Query: 78  WNEQYEKLTSSDETGLIIVW 97
            +   + + +        V+
Sbjct: 314 ISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.003
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 10/92 (10%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           V  +        +  GG  G +KV  +      +                      +R+ 
Sbjct: 54  VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ---------LDCLNRDNYIRSC 103

Query: 77  IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
                   L    E   + +W L       + 
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 3e-04
 Identities = 9/88 (10%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 12  PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
            ++T ++ +        I V G +    +  L +GK              ++ ++   + 
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL-------------VHANILKDAD 325

Query: 72  KVRAIIWNEQYEKLTSSDETGLIIVWML 99
           ++ ++ +  +   + + ++ G   + +L
Sbjct: 326 QIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           + CL +  N  ++  G DD +++V      K                  L GH G V A+
Sbjct: 16  ITCLQFEDN--YVITGADDKMIRVYDSINKKFL--------------LQLSGHDGGVWAL 59

Query: 77  IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
            +      ++ S +  + +  +   C      
Sbjct: 60  KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 6e-04
 Identities = 6/69 (8%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
          ++ +    ++  + +   DG L V K D   ++   +               +   +   
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-----------SLRYKHPLLCC 62

Query: 77 IWNEQYEKL 85
           + +  +  
Sbjct: 63 NFIDNTDLQ 71

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 7   KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL 66
             + +    +        +   I  G  DG +KV  L    +         +     ++L
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-----RTL 263

Query: 67  QGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
             HSG+V  + ++E    + SS     I++W
Sbjct: 264 VEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (78), Expect = 0.001
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 13/92 (14%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
           +  L+   +   +     +G +    + TG                      H+  +  I
Sbjct: 15  ITALSSSADGKTLFSADAEGHINSWDISTGIS-------------NRVFPDVHATMITGI 61

Query: 77  IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
               + +  T S +  L +V       D  + 
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.75
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.71
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.68
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.66
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.64
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.63
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.62
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.59
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.58
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.57
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.56
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.54
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.53
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.53
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.5
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.48
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.46
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.41
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.37
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.24
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.19
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.15
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.1
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.08
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.04
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.02
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.01
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.5
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.48
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.48
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.37
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.66
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.39
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	95.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.63
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.69
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	93.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	93.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	93.42
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	91.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	87.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	80.42

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6e-18  Score=108.48  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCc---EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGL---LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ..+|...|.+++|+|+|++|++|+.|+.   +++||+..+.... ..............+.+|.+.|.+++|+|++++|+
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~-~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             cccccceEEEcccccccceeeeecCCCCcceeeecccccceeee-eeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence            3479999999999999999999998874   8999998764100 00011111112234457999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCChhhh
Q psy11100         87 SSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +++.|++|++||+.+++.+.+|
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEEEEE
Confidence            9999999999999999877655

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.9e-16  Score=98.08  Aligned_cols=85  Identities=11%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   85 (110)
                      .++...+|++.|.+++|+|++++|++|+.||.|++||+....              ....+..|...|.+++|+|++..+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~--------------~~~~~~~~~~~v~~v~~~~~~~~l  112 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--------------KVHAIPLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------------EEEEEECSCSCEEEEEECTTSSEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce--------------eEEEEecccccEEeeEeeccceee
Confidence            345567999999999999999999999999999999999876              667788899999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~  104 (110)
                      ++++.|+.+.+|+......
T Consensus       113 ~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             EEEETTCCEEEEESSSSCS
T ss_pred             eeecccceeeccccccccc
Confidence            9999999999999766543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2e-16  Score=96.64  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|.+.|.+++++|+++++++++.||.|++||+....              .+..+.+|.+.|.+++|+|+++.|++++.|
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--------------CCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            688999999999999999999999999999998876              667888999999999999999999999999


Q ss_pred             CcEEEEe
Q psy11100         92 GLIIVWM   98 (110)
Q Consensus        92 ~~i~~w~   98 (110)
                      ++|++||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            9999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.4e-15  Score=94.18  Aligned_cols=73  Identities=12%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .+...+.+++|+|+++++++|+.||.|++||+....              .+..+.+|.+.|.+++|+|++..|++++.|
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--------------RAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc--------------EEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence            466789999999999999999999999999999876              678889999999999999999999999999


Q ss_pred             CcEEEEe
Q psy11100         92 GLIIVWM   98 (110)
Q Consensus        92 ~~i~~w~   98 (110)
                      +.|++||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=2.7e-16  Score=100.06  Aligned_cols=79  Identities=18%  Similarity=0.380  Sum_probs=69.5

Q ss_pred             CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL   93 (110)
Q Consensus        14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~   93 (110)
                      ..+|+|++|+|+|+++++++.++.|++|+.....            +.....+.+|.+.|.+++|+|++.+|++++.|+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~------------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~   74 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN   74 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC------------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            3679999999999999999999999999997653            1245677899999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy11100         94 IIVWMLYKCND  104 (110)
Q Consensus        94 i~~w~~~~~~~  104 (110)
                      |++||+.++..
T Consensus        75 i~vWd~~~~~~   85 (371)
T d1k8kc_          75 AYVWTLKGRTW   85 (371)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEeeccccc
Confidence            99999987654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.1e-15  Score=93.99  Aligned_cols=88  Identities=11%  Similarity=0.044  Sum_probs=71.5

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLT   86 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~   86 (110)
                      .+..+|...|++++|+|++++|++++.|+.|++||+.....           .........|...|.+++|+|++. .++
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----------~~~~~~~~~h~~~V~~v~f~~~~~~~l~   73 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------NVDLLQSLRYKHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------EEEEEEEEECSSCEEEEEEEESSSEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-----------ceEEEEecCCCCCEEEEEEeCCCCCEEE
Confidence            46678999999999999999999999999999999976540           012233346889999999998755 689


Q ss_pred             EecCCCcEEEEeCCCCCChh
Q psy11100         87 SSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +++.|+.+.+|++..+....
T Consensus        74 sg~~d~~v~~w~~~~~~~~~   93 (342)
T d1yfqa_          74 VGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEE
T ss_pred             Ecccccceeeeecccccccc
Confidence            99999999999998766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=2.9e-15  Score=92.09  Aligned_cols=82  Identities=11%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKL   85 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l   85 (110)
                      .++..||++.|++++|+|++++|++|+.|+.|++||+..+.              ....+ ..|...|.+++|+|++.++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~~~   70 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--------------SNRVFPDVHATMITGIKTTSKGDLF   70 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCCcEEEEEeeccceee
Confidence            46778999999999999999999999999999999998775              34444 4688899999999998755


Q ss_pred             EEecCCCcEEEEeCCCCC
Q psy11100         86 TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~  103 (110)
                       +++.|+.+++|+.....
T Consensus        71 -~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2          71 -TVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             -EEETTTEEEEECSSSSS
T ss_pred             -cccceeeEEEeccCCcc
Confidence             55668999999976543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=9.9e-16  Score=96.88  Aligned_cols=93  Identities=16%  Similarity=0.241  Sum_probs=67.2

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCccc-----ccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA-----AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      +|++.|+|++|+|+|++|++|+ |+.|++||+..+........     ...... .......|...|.+++|+|++..|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL-NTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccc-ccccccCCCCCEEEEEECCCCCcce
Confidence            6999999999999999999987 88999999987641100000     000000 1122345677899999999999999


Q ss_pred             EecCCCcEEEEeCCCCCChh
Q psy11100         87 SSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~~  106 (110)
                      +++.|+.|++||...++.+.
T Consensus       138 s~~~dg~v~i~~~~~~~~~~  157 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVM  157 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEE
T ss_pred             eccccccccccccccccccc
Confidence            99999999999998876543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.5e-15  Score=94.30  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...|.+++|+|+|++|++|+ |+.|++||+.......         .........|.+.|.+++|+|+++.|++++.|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~---------~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS---------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS---------CSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc---------eeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            7999999999999999999987 7899999998653100         00223345688999999999999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11100         92 GLIIVWMLYKC  102 (110)
Q Consensus        92 ~~i~~w~~~~~  102 (110)
                      +.|++||+...
T Consensus       119 g~i~iwd~~~~  129 (337)
T d1gxra_         119 STLSIWDLAAP  129 (337)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccccccccccc
Confidence            99999998754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.7e-15  Score=95.81  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=69.1

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE------cCCCCeE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW------NEQYEKL   85 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l   85 (110)
                      .|...|.+++|+|++++|++|+.||.|++||+..+.              .+..+.+|.+.|.++++      +|++..|
T Consensus       306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--------------~~~~l~~H~~~V~~~~~~~~~~~spd~~~l  371 (388)
T d1erja_         306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--------------PLLMLQGHRNSVISVAVANGSSLGPEYNVF  371 (388)
T ss_dssp             CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------------EEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence            678899999999999999999999999999999887              67889999999999875      5688899


Q ss_pred             EEecCCCcEEEEeCCC
Q psy11100         86 TSSDETGLIIVWMLYK  101 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~  101 (110)
                      ++++.|++|++|++++
T Consensus       372 ~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         372 ATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEETTSEEEEEEEEE
T ss_pred             EEEeCCCEEEEEeeee
Confidence            9999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=4.3e-15  Score=92.82  Aligned_cols=91  Identities=16%  Similarity=0.260  Sum_probs=72.4

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|...|.++.|+|+++++++++.|+.+++||........ .. ..     ......+|...|.+++|+|+++.|++++.
T Consensus       186 ~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~-~~-~~-----~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-VF-ED-----DSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EC-BC-----TTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccCccccccccccccccccccccccccccc-cc-cc-----cccccccccccccccccCCCCCEEEEEeC
Confidence            3688999999999999999999999999999998764100 00 00     01123457889999999999999999999


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      |+.|++||+++++.+.++
T Consensus       259 Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         259 DKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             TSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEE
Confidence            999999999998876554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.2e-14  Score=90.84  Aligned_cols=89  Identities=12%  Similarity=0.248  Sum_probs=73.5

Q ss_pred             eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS   87 (110)
Q Consensus         8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s   87 (110)
                      ++..+|++.|++++|+|+|+++++|+.|+.|++||+.....            .....+..|...|.+++|+|++..+++
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH------------ILKTTIPVFSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC------------CEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc------------ccccccccccCcccccccccccccccc
Confidence            34458999999999999999999999999999999987640            123456788999999999999999888


Q ss_pred             ecC--CCcEEEEeCCCCCChhhh
Q psy11100         88 SDE--TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~--~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.  +..+++|++.+++...++
T Consensus       120 ~~~~~~~~~~v~~~~~~~~~~~l  142 (311)
T d1nr0a1         120 VGEGRERFGHVFLFDTGTSNGNL  142 (311)
T ss_dssp             EECCSSCSEEEEETTTCCBCBCC
T ss_pred             ccccccccccccccccccccccc
Confidence            875  456999999887765544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.5e-15  Score=90.15  Aligned_cols=81  Identities=20%  Similarity=0.334  Sum_probs=73.5

Q ss_pred             cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      ..+|++.|++++|+|++++|++++.|+.|++||+.++.              ....+..|...|.+++|+|++..++++.
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--------------~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------FERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--------------EEEEEeCCCCcEEEEeeecccccccccc
Confidence            45899999999999999999999999999999999876              5678889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .++.+..|+......
T Consensus        79 ~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          79 ADMTIKLWDFQGFEC   93 (317)
T ss_dssp             TTSCCCEEETTSSCE
T ss_pred             ccccccccccccccc
Confidence            999999998776554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-14  Score=90.95  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|.+.|.+++|+|+++++++++.|+.+++||+....              .+... .|...|.+++|+|++++|++++.
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~-~~~~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------------SIFQS-KESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEE-ECSSCEEEEEECTTSCEEEEEET
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--------------EEEEc-cCCCCEEEEEEeCCCCEEEEEeC
Confidence            3688999999999999999999999999999999876              34443 46789999999999999999999


Q ss_pred             CCcEEEEeC
Q psy11100         91 TGLIIVWML   99 (110)
Q Consensus        91 ~~~i~~w~~   99 (110)
                      |+.|++||+
T Consensus       327 D~~I~vWdl  335 (337)
T d1gxra_         327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=2.3e-14  Score=90.98  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      .+|.++|.+++|+|++++|++++.|+.+++||+....            ......+..|...|.+++|+|+++.+++++.
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~  115 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT------------WKPTLVILRINRAARCVRWAPNEKKFAVGSG  115 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE------------EEEEEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc------------cccccccccccccccccccccccccceeecc
Confidence            4799999999999999999999999999999998654            1133445678889999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      ++.+++|++.....
T Consensus       116 d~~i~i~~~~~~~~  129 (371)
T d1k8kc_         116 SRVISICYFEQEND  129 (371)
T ss_dssp             TSSEEEEEEETTTT
T ss_pred             cCcceeeeeecccc
Confidence            99999999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.5e-14  Score=88.52  Aligned_cols=79  Identities=25%  Similarity=0.379  Sum_probs=67.3

Q ss_pred             cCCCCCce-EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100         10 AIPNNTKV-NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS   88 (110)
Q Consensus        10 ~~~h~~~v-~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~   88 (110)
                      ..+|...| +|+  ++++++|++|+.|+.|++||+....              .+..+.+|.+.|.+++|+|+ ..++++
T Consensus         8 L~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~--------------~~~~l~~H~~~V~~l~~s~~-~~l~s~   70 (355)
T d1nexb2           8 LRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKK--------------FLLQLSGHDGGVWALKYAHG-GILVSG   70 (355)
T ss_dssp             EECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTE--------------EEEEEECCSSCEEEEEEETT-TEEEEE
T ss_pred             ECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCc--------------EEEEEECCCCCEEEEEEcCC-CEEEEE
Confidence            45898876 454  5578899999999999999998876              67889999999999999985 578999


Q ss_pred             cCCCcEEEEeCCCCCCh
Q psy11100         89 DETGLIIVWMLYKCNDD  105 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~  105 (110)
                      +.|+.|++|+.......
T Consensus        71 s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          71 STDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             ETTCCEEEEETTTTEEE
T ss_pred             ecccccccccccccccc
Confidence            99999999998876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=2.9e-14  Score=87.54  Aligned_cols=83  Identities=20%  Similarity=0.361  Sum_probs=70.4

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|.+.|.+++|+|++.++++++.++.+++|+......           ......+..|...|.+++|+|++..+++++.
T Consensus       176 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----------LAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----------ESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccc-----------ccccccccccccccccccccccccceEEEcC
Confidence            46889999999999999999999999999999886540           0122345668899999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy11100         91 TGLIIVWMLYKCND  104 (110)
Q Consensus        91 ~~~i~~w~~~~~~~  104 (110)
                      |+.|++||++++..
T Consensus       245 dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         245 DNSVIVWNMNKPSD  258 (299)
T ss_dssp             TSCEEEEETTCTTS
T ss_pred             CCEEEEEECCCCCc
Confidence            99999999987654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.5e-14  Score=84.28  Aligned_cols=78  Identities=19%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..|...|.|+  +++|++|++|+.|+.|++||+....              ....+.+|.+.|.+++|  ++..|++++.
T Consensus        12 ~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~--------------~~~~l~~H~~~V~~v~~--~~~~l~s~s~   73 (293)
T d1p22a2          12 SETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLE--------------CKRILTGHTGSVLCLQY--DERVIITGSS   73 (293)
T ss_dssp             CSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCC--------------EEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCc--------------EEEEEecCCCCEeeeec--ccceeecccc
Confidence            3677889886  5689999999999999999999876              67888999999998877  6779999999


Q ss_pred             CCcEEEEeCCCCCChh
Q psy11100         91 TGLIIVWMLYKCNDDD  106 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~  106 (110)
                      |+.+++|++..+....
T Consensus        74 D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             TSCEEEEESSSCCEEE
T ss_pred             cccccccccccccccc
Confidence            9999999998876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.1e-14  Score=86.02  Aligned_cols=81  Identities=25%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .++..+|++.|.+ +++++|++|++|+.|+.|++||+.++.              .+.++.+|...|.+++|+|+  .++
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~--------------~~~~~~~h~~~V~~v~~~~~--~l~   71 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK--------------CLRTLVGHTGGVWSSQMRDN--III   71 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC--------------EEEECCCCSSCEEEEEEETT--EEE
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEeCCCCCEEEEEeCCC--ccc
Confidence            3456699999865 467789999999999999999999876              67888999999999999874  899


Q ss_pred             EecCCCcEEEEeCCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCND  104 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~  104 (110)
                      +++.|+.+++|+......
T Consensus        72 s~s~D~~~~~~~~~~~~~   89 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGEC   89 (342)
T ss_dssp             EEETTSCEEEEETTTTEE
T ss_pred             cceecccccccccccccc
Confidence            999999999999876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.2e-13  Score=84.30  Aligned_cols=82  Identities=15%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-------
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-------   81 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------   81 (110)
                      +...|.+.+.+++|+|++.++++++.++.+++||.....             .....+..|...|.+++|+|.       
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-------------VKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------EEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeccCCceeEEEeccCccccccccccccccceeecccc-------------cccccccccccccceeeecccccccccc
Confidence            344688899999999999999999999999999998765             122335678899999999874       


Q ss_pred             ---CCeEEEecCCCcEEEEeCCCCC
Q psy11100         82 ---YEKLTSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        82 ---~~~l~s~~~~~~i~~w~~~~~~  103 (110)
                         +.++++++.|+.|++||++++.
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCC
Confidence               4579999999999999997744

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=5.3e-14  Score=88.01  Aligned_cols=82  Identities=12%  Similarity=0.219  Sum_probs=68.0

Q ss_pred             CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc---CCCCeEEE
Q psy11100         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN---EQYEKLTS   87 (110)
Q Consensus        12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s   87 (110)
                      +|...|.+++|+|+ +.++++++.|+.|++||.....              ....+..|...+..+.|+   |++..|++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------------FLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------------EEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccc--------------ccccccccccccccceeeeeccCCCEEEE
Confidence            67788999999997 6889999999999999998876              566777776665544444   67899999


Q ss_pred             ecCCCcEEEEeCCCCCChhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~  107 (110)
                      ++.|+.|++||+++++.+.+
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEE
Confidence            99999999999998876544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.4e-13  Score=86.80  Aligned_cols=88  Identities=15%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .+...+.+++|+|++ ++++|+.|+.|++||+....    ..    ..+.....+.+|...|.+++|+|+|+.|++++.|
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~----~~----~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----PL----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----EE----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc----cc----cccccccccccccceEEEcccccccceeeeecCC
Confidence            455678899999998 78999999999999998764    00    0011123455688999999999999999999888


Q ss_pred             Cc---EEEEeCCCCCChhhh
Q psy11100         92 GL---IIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~---i~~w~~~~~~~~~~~  108 (110)
                      ++   |++||+++++.+..+
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l  272 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSL  272 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEE
T ss_pred             CCcceeeecccccceeeeee
Confidence            64   899999988765443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3.5e-13  Score=82.23  Aligned_cols=76  Identities=20%  Similarity=0.397  Sum_probs=63.7

Q ss_pred             cCCCCCceEEEEEecC----------CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100         10 AIPNNTKVNCLAWHQN----------QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN   79 (110)
Q Consensus        10 ~~~h~~~v~~~~~~p~----------~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s   79 (110)
                      ..+|+++|.+++|+|.          +.++++|+.|+.+++|++....             .....+.+|.+.|.+++|+
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-------------~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-------------KIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-------------CCEEETTSSTTCEEEEEEE
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-------------eEEEEeCCCCCCeEEEEEC
Confidence            3478999999999874          4679999999999999987643             1455667899999999999


Q ss_pred             CCCCeEEEecCCCcEEEEeC
Q psy11100         80 EQYEKLTSSDETGLIIVWML   99 (110)
Q Consensus        80 ~~~~~l~s~~~~~~i~~w~~   99 (110)
                      |++ .+++++.|+.|++|++
T Consensus       268 ~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         268 TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETT-EEEEEETTSCEEEEEE
T ss_pred             CCC-EEEEEECCCeEEEEEE
Confidence            986 5888999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=1.6e-12  Score=80.82  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             ccCCCCCceEEEEEecCCCEEEEEecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus         9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ..++|.+.|.+++|+|||+.|++++.+.  .+++||...+.               ...+..|...+..++|+|++..++
T Consensus        37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---------------~~~~~~~~~~v~~~~~spdg~~l~  101 (360)
T d1k32a3          37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---------------AEKFEENLGNVFAMGVDRNGKFAV  101 (360)
T ss_dssp             EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---------------EEECCCCCCSEEEEEECTTSSEEE
T ss_pred             EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---------------EEEeeCCCceEEeeeecccccccc
Confidence            3447999999999999999887766543  78999998775               356678889999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCh
Q psy11100         87 SSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~~~  105 (110)
                      +++.++.+++|++.+++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3         102 VANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEETTSEEEEEETTTCCEE
T ss_pred             eecccccccccccccccee
Confidence            9999999999999887754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=2.3e-12  Score=80.41  Aligned_cols=87  Identities=14%  Similarity=0.027  Sum_probs=68.6

Q ss_pred             CCCCCceEEEEEecCCCE-EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEe
Q psy11100         11 IPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSS   88 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~   88 (110)
                      .+|...|.+++|+|++.. +++++.|+.+++|+......           .........|...|.+++|+|+ +.+++++
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-----------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-----------SASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-----------EEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             eecccccccccccccccceEEEeeccccccccccccccc-----------ceecccccCCCCccEEeeeccccceecccc
Confidence            368899999999998764 77889999999999876540           0012223456778999999997 5779999


Q ss_pred             cCCCcEEEEeCCCCCChhhh
Q psy11100         89 DETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        89 ~~~~~i~~w~~~~~~~~~~~  108 (110)
                      +.|+.|++||+++++.+.++
T Consensus       225 ~~d~~i~iwd~~~~~~~~~l  244 (325)
T d1pgua1         225 GSDRKISCFDGKSGEFLKYI  244 (325)
T ss_dssp             ETTCCEEEEETTTCCEEEEC
T ss_pred             ccccceeeeeeccccccccc
Confidence            99999999999988876554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-10  Score=71.61  Aligned_cols=74  Identities=24%  Similarity=0.416  Sum_probs=59.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-----eccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-----QGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .|...+.++.+  ++..+++++.||.|++||+.++.              .+..+     .+|...|.+++|+|++..++
T Consensus       258 ~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~--------------~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         258 KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGE--------------FIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCC--------------EEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCC--------------EEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            45666666655  56789999999999999999876              33433     24677899999999999999


Q ss_pred             EecCCCc----EEEEeCCC
Q psy11100         87 SSDETGL----IIVWMLYK  101 (110)
Q Consensus        87 s~~~~~~----i~~w~~~~  101 (110)
                      +++.||+    |++||+..
T Consensus       322 ~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         322 VGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSSSSCCEEEEEECCC
T ss_pred             EEeCCCCCeeEEEEEeCCC
Confidence            9998886    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.9e-11  Score=74.66  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .|...+.+++|+|++.+|++|+.||.|++||+....              .+..+..+ ..+..++|+|++..+++++.|
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~--------------~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK--------------KIKNFAKF-NEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE--------------EEEECCCC-SSSEEEEEEECSSEEEEEEEC
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEECCCCc--------------EEEEecCC-CCCEEEEEEeCCCEEEEEEcC
Confidence            566789999999999999999999999999999876              44555433 345567889999999888878


Q ss_pred             CcEEEEeC
Q psy11100         92 GLIIVWML   99 (110)
Q Consensus        92 ~~i~~w~~   99 (110)
                      ..+++|..
T Consensus       314 d~~~~~~~  321 (342)
T d1yfqa_         314 DTFKTNAA  321 (342)
T ss_dssp             THHHHCSS
T ss_pred             CcEEEeee
Confidence            77776654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=5.3e-10  Score=68.62  Aligned_cols=77  Identities=17%  Similarity=0.303  Sum_probs=66.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ++...+.++.++|++..+++++.|+.+++|+.....              ....+.+|...|.+++|++  ..+++++.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--------------~~~~~~~h~~~v~~~~~~~--~~l~~~~~d  262 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------------LMYTLQGHTALVGLLRLSD--KFLVSAAAD  262 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCCCEEEECS--SEEEEECTT
T ss_pred             ccccccccccccccceeeecccccceEEeeeccccc--------------ccccccccccccccccccc--ceeeeeecc
Confidence            567788899999999999999999999999999876              6677888889998888864  678999999


Q ss_pred             CcEEEEeCCCCCC
Q psy11100         92 GLIIVWMLYKCND  104 (110)
Q Consensus        92 ~~i~~w~~~~~~~  104 (110)
                      +.|++||+.++..
T Consensus       263 g~i~iwd~~~~~~  275 (355)
T d1nexb2         263 GSIRGWDANDYSR  275 (355)
T ss_dssp             SEEEEEETTTCCE
T ss_pred             cccccccccccce
Confidence            9999999887653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=8.7e-11  Score=76.19  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=61.6

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~~~~i   94 (110)
                      .+..++|+|||+++++++.|+.+++||+.....   ..      ...+....+|.+.+.+..|+|||+.+ +++..++.+
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~---~~------~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TT------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CE------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc---eE------EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            588999999999999999999999999987540   00      00112223455666677888999984 778889999


Q ss_pred             EEEeCCCCCChh
Q psy11100         95 IVWMLYKCNDDD  106 (110)
Q Consensus        95 ~~w~~~~~~~~~  106 (110)
                      .+||..++..+.
T Consensus       134 ~i~d~~t~~~~~  145 (432)
T d1qksa2         134 VIMDGETLEPKK  145 (432)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEeCcccccee
Confidence            999999877543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.08  E-value=5.3e-10  Score=69.23  Aligned_cols=80  Identities=14%  Similarity=0.069  Sum_probs=67.5

Q ss_pred             CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-
Q psy11100         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-   89 (110)
Q Consensus        11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-   89 (110)
                      .+|.+.+.+++|+|+|+.+++++.++.+++|+.....              ....+..+...+.+++|+|+|+.++.+. 
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccc--------------eeeeeecccccccchhhccceeeeeeecc
Confidence            3688999999999999999999999999999998876              5566777888889999999999987543 


Q ss_pred             ---------CCCcEEEEeCCCCCC
Q psy11100         90 ---------ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ---------~~~~i~~w~~~~~~~  104 (110)
                               .++.+++|+..+++.
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             ccccceeeccccceeeeccccCce
Confidence                     345688999987653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-10  Score=67.13  Aligned_cols=78  Identities=24%  Similarity=0.360  Sum_probs=56.5

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...+.+  +++++..+++++.||.+++||+......    . ..........+.+|.+.|.+++|  ++..|++++.|
T Consensus       216 ~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~D  286 (293)
T d1p22a2         216 GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDP----R-APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  286 (293)
T ss_dssp             CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTST----T-SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             ccceeeee--ccccceEEEEEcCCCEEEEEECCCCccc----c-ccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecC
Confidence            45555543  5667888999999999999997653311    0 00111245678889999999998  45679999999


Q ss_pred             CcEEEEe
Q psy11100         92 GLIIVWM   98 (110)
Q Consensus        92 ~~i~~w~   98 (110)
                      ++|++||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=3.5e-10  Score=69.63  Aligned_cols=73  Identities=12%  Similarity=0.071  Sum_probs=60.4

Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeE-EEecCCCcEEEE
Q psy11100         20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKL-TSSDETGLIIVW   97 (110)
Q Consensus        20 ~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~s~~~~~~i~~w   97 (110)
                      ++++++++++++++.++.|.+||+.+..              .+.++. .+...+..++|+|||+.+ +++..++.|.+|
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~--------------~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~   67 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT--------------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   67 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE--------------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC--------------EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEE
Confidence            3678999999999999999999999876              566665 345567899999999985 677788999999


Q ss_pred             eCCCCCChh
Q psy11100         98 MLYKCNDDD  106 (110)
Q Consensus        98 ~~~~~~~~~  106 (110)
                      |+.+++.+.
T Consensus        68 d~~t~~~~~   76 (346)
T d1jmxb_          68 DLDTCKNTF   76 (346)
T ss_dssp             ETTTTEEEE
T ss_pred             eCccCeeee
Confidence            999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=4.4e-10  Score=72.28  Aligned_cols=82  Identities=7%  Similarity=-0.082  Sum_probs=61.1

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecCCCc
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDETGL   93 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~~~~   93 (110)
                      ..+..++|+|||+.+++++.|+.+++||+.+...    .     ....+....+|.+.+.+++|+|||+.+ +++..++.
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~----~-----~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP----T-----KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----E-----EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce----e-----EEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCe
Confidence            4588999999999999999999999999987750    0     000112223455667778889999985 55557899


Q ss_pred             EEEEeCCCCCCh
Q psy11100         94 IIVWMLYKCNDD  105 (110)
Q Consensus        94 i~~w~~~~~~~~  105 (110)
                      +.+||..++...
T Consensus       133 v~i~d~~~~~~~  144 (426)
T d1hzua2         133 FAIMDGETLEPK  144 (426)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEcCCcccee
Confidence            999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.94  E-value=3.4e-09  Score=68.05  Aligned_cols=62  Identities=13%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         28 WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        28 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      .+++.+.|+.|++||+.+..              .+..+..+ ..+..++|||||+.+++++.|+.+++||+.+++.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~--------------~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~   95 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKK--------------IVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP   95 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCS--------------EEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEEEcCCCEEEEEECCCCc--------------EEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce
Confidence            46778889999999999887              66777765 4689999999999999999999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.90  E-value=7.1e-09  Score=63.39  Aligned_cols=80  Identities=5%  Similarity=-0.073  Sum_probs=63.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      ++...+....++|++..+...  ++.+++||+....              .+..+. +...+.+++|+|+|..++.++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~--------------~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--------------SIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--------------EEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             CCCcceEEEEecccceEEEEc--cccEEEEECCCCc--------------EEEEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence            355567778888888877655  4789999999876              444443 45667899999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      +.|.+||..+++.+.++
T Consensus       301 ~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         301 GDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SEEEEEETTTCCEEEEE
T ss_pred             CcEEEEECCCCcEEEEE
Confidence            99999999998876554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.84  E-value=2.5e-08  Score=60.12  Aligned_cols=79  Identities=9%  Similarity=-0.054  Sum_probs=60.1

Q ss_pred             CceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDE   90 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~   90 (110)
                      ..+..+++++++..++.+..   ++.+.+||.....              ....+.. ...+..++|+|+|+.+ +++..
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~--------------~~~~~~~-~~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------------ITARIPV-GPDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------------EEEEEEC-CSSEEEEEECTTSSEEEEEETT
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCe--------------EEEEEcC-CCCEEEEEEeCCCCEEEEEECC
Confidence            45677889999987655433   4679999998875              3444443 3567899999999974 68888


Q ss_pred             CCcEEEEeCCCCCChhhh
Q psy11100         91 TGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        91 ~~~i~~w~~~~~~~~~~~  108 (110)
                      ++.|.+||+.+++.+.++
T Consensus       265 ~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         265 CNTVSVIDTATNTITATM  282 (301)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEE
Confidence            999999999998776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=7.3e-09  Score=63.55  Aligned_cols=81  Identities=9%  Similarity=-0.062  Sum_probs=63.6

Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      +|...+..+.+++++..++... ++.+.+||.....              .+..+. +...+.+++|+|||+.++.++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~--------------~~~~~~-~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK--------------LIKAAN-LDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE--------------EEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred             cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCc--------------EEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence            5666778888888877666655 3579999998875              444443 34568899999999999999999


Q ss_pred             CcEEEEeCCCCCChhhh
Q psy11100         92 GLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        92 ~~i~~w~~~~~~~~~~~  108 (110)
                      +.|.+||.++++.+.++
T Consensus       313 ~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         313 NDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SEEEEEETTTTEEEEEE
T ss_pred             CcEEEEECccCCEEEEE
Confidence            99999999998876554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.74  E-value=4.1e-08  Score=63.42  Aligned_cols=63  Identities=13%  Similarity=0.024  Sum_probs=54.1

Q ss_pred             CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100         27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~  104 (110)
                      -.+++.+.++.+.+||..+..              .+..+..+ ..+..++|||||+.+++++.|+.+.+||+.+++.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~--------------v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~   95 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYE--------------IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP   95 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCC--------------EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEEEEcCCCEEEEEECCCCc--------------EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc
Confidence            345888999999999999887              66777665 4689999999999999999999999999987663

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=2.3e-08  Score=61.06  Aligned_cols=67  Identities=6%  Similarity=-0.015  Sum_probs=54.0

Q ss_pred             CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeE-EEecCCCcEEEEeCCCCC
Q psy11100         27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKL-TSSDETGLIIVWMLYKCN  103 (110)
Q Consensus        27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l-~s~~~~~~i~~w~~~~~~  103 (110)
                      +++++++.|+.|.+||+.+..              ....+..  +...+..++|+|||+.+ ++++.++.|.+||+.+++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~--------------~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA--------------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--------------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCe--------------EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            468899999999999999876              5555554  34557899999999985 577789999999999987


Q ss_pred             Chhh
Q psy11100        104 DDDE  107 (110)
Q Consensus       104 ~~~~  107 (110)
                      .+..
T Consensus        68 ~~~~   71 (337)
T d1pbyb_          68 TLGR   71 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.70  E-value=4.3e-08  Score=63.40  Aligned_cols=78  Identities=10%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             CCCCceEEEEEecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY   82 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~   82 (110)
                      .|...|.+..|+|||++|+.++.         ++.+.+||+..+.               ...+..+...+..+.|||+|
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---------------~~~l~~~~~~~~~~~~SPDG  123 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---------------LITEERIPNNTQWVTWSPVG  123 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---------------ECCSSCCCTTEEEEEECSST
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc---------------ccccccCCccccccccccCc
Confidence            45567899999999999887743         4567899998764               34456677889999999999


Q ss_pred             CeEEEecCCCcEEEEeCCCCCCh
Q psy11100         83 EKLTSSDETGLIIVWMLYKCNDD  105 (110)
Q Consensus        83 ~~l~s~~~~~~i~~w~~~~~~~~  105 (110)
                      +.++... ++.+.+|+..++...
T Consensus       124 ~~ia~~~-~~~l~~~~~~~g~~~  145 (470)
T d2bgra1         124 HKLAYVW-NNDIYVKIEPNLPSY  145 (470)
T ss_dssp             TCEEEEE-TTEEEEESSTTSCCE
T ss_pred             ceeeEee-cccceEEECCCCcee
Confidence            9998865 678999998877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=8.4e-08  Score=58.62  Aligned_cols=80  Identities=10%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             CCCCceEEEEEecCCCEEEE-EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-
Q psy11100         12 PNNTKVNCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-   89 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-   89 (110)
                      .|.+.+..++|+|||++|++ +..++.+.+|++.....   .        ............+..++|+|+|+.++.++ 
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---~--------~~~~~~~~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---A--------LTFAAESALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---C--------EEEEEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---c--------EEEeeecccCCCceEEEEcCCCCEEeeccc
Confidence            56788999999999998854 45589999999876540   0        01111122345567899999999977776 


Q ss_pred             CCCcEEEEeCCCC
Q psy11100         90 ETGLIIVWMLYKC  102 (110)
Q Consensus        90 ~~~~i~~w~~~~~  102 (110)
                      .++.+.+|+....
T Consensus       103 ~~~~v~~~~~~~~  115 (333)
T d1ri6a_         103 NAGNVSVTRLEDG  115 (333)
T ss_dssp             TTTEEEEEEEETT
T ss_pred             CCCceeeeccccc
Confidence            4678888876544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.61  E-value=2.8e-07  Score=55.40  Aligned_cols=77  Identities=3%  Similarity=-0.020  Sum_probs=60.1

Q ss_pred             CceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCC
Q psy11100         15 TKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETG   92 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~   92 (110)
                      ..+..++|+|||+++ +++..++.|.+||+....              ....+..+ ..+..++|++++.. ++++..+.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------VIATVPAG-SSPQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------EEEEEECS-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------------eeeeeecc-ccccccccccccccccccccccc
Confidence            457789999999976 566778999999999876              45555554 35678999999987 55666788


Q ss_pred             cEEEEeCCCCCChh
Q psy11100         93 LIIVWMLYKCNDDD  106 (110)
Q Consensus        93 ~i~~w~~~~~~~~~  106 (110)
                      .+.+|+..++....
T Consensus        97 ~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          97 TLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             eeeecccccceeee
Confidence            89999998876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.50  E-value=3.2e-07  Score=56.56  Aligned_cols=77  Identities=13%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             EEEEEecCCCEEEEEecC----------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC--eE
Q psy11100         18 NCLAWHQNQGWIAVGGDD----------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE--KL   85 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l   85 (110)
                      ..++++|++..+.....+          ..+.+||.....              ....+.. ...+.+++|+|+|+  ++
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--------------~~~~~~~-~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------------RLAKFEM-GHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEEE-EEEECEEEECCSSSCEEE
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--------------EEEEecC-CCCEEEEEEcCCCCeEEE
Confidence            347788888876554433          258899988775              3344432 34577899999997  35


Q ss_pred             EEecCCCcEEEEeCCCCCChhhhh
Q psy11100         86 TSSDETGLIIVWMLYKCNDDDEWK  109 (110)
Q Consensus        86 ~s~~~~~~i~~w~~~~~~~~~~~~  109 (110)
                      +++..++.|.+||.++++.+.+++
T Consensus       317 v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         317 ALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEECCCCEEEEEECCCCCEEEEEe
Confidence            677789999999999998876653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.48  E-value=1.2e-06  Score=54.41  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=48.2

Q ss_pred             EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEEecCCCcEEEEeCCCCCChhhh
Q psy11100         31 VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTSSDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        31 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ....++.+.+||...+.              ....+ .+...+..++|+|||+.  +++++.++.|++||..+++.+..+
T Consensus       293 ~~~~~~~v~~~d~~t~~--------------~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQ--------------TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eecCCCeEEEEECCCCc--------------EEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            34445677888888775              33433 34567889999999984  567889999999999999987765


Q ss_pred             h
Q psy11100        109 K  109 (110)
Q Consensus       109 ~  109 (110)
                      +
T Consensus       358 ~  358 (373)
T d2madh_         358 V  358 (373)
T ss_pred             C
Confidence            4

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.48  E-value=5.5e-07  Score=55.98  Aligned_cols=80  Identities=10%  Similarity=-0.055  Sum_probs=59.4

Q ss_pred             CCCCceEEEEEecCCCEEEEEe-----cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVGG-----DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .+.+++..++++|||+.++...     ..+.+.+||..+++              .+..+..+.  ...++|+|||+.++
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--------------~~~~~~~~~--~~~~a~SpDG~~l~   81 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--------------ILGHVNGGF--LPNPVAAHSGSEFA   81 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--------------EEEEEeCCC--CccEEEcCCCCEEE
Confidence            4678899999999999876542     23568899988876              455555443  33699999999987


Q ss_pred             Eec----------CCCcEEEEeCCCCCChhh
Q psy11100         87 SSD----------ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        87 s~~----------~~~~i~~w~~~~~~~~~~  107 (110)
                      .+.          .++.|.+||..+++...+
T Consensus        82 va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  112 (373)
T d2madh_          82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIAD  112 (373)
T ss_pred             EEeecCCcccccccceEEEEEECCCCcEEEE
Confidence            764          357799999998876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5.7e-07  Score=54.82  Aligned_cols=64  Identities=9%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE-EEecCCCcEEEEeCCCCCC
Q psy11100         29 IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL-TSSDETGLIIVWMLYKCND  104 (110)
Q Consensus        29 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~~~~i~~w~~~~~~~  104 (110)
                      .+++..++.|++|++....           .+ .......+.+.+..++|||||+.| +++..++.|.+|++..+..
T Consensus         7 ~v~~~~~~~I~v~~~~~~~-----------~l-~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEG-----------AL-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTS-----------CE-EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEECCCCCcEEEEEEcCCC-----------Ce-EEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            4677889999999997543           01 122223466889999999999986 5555689999999876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.14  E-value=1.6e-06  Score=53.31  Aligned_cols=73  Identities=10%  Similarity=0.017  Sum_probs=51.7

Q ss_pred             EEEEecCCCEEEEEe-----cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec----
Q psy11100         19 CLAWHQNQGWIAVGG-----DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD----   89 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----   89 (110)
                      -.+.+||++.+....     ....+.+||..++.              .+.++..+  ....++|||||+.++..+    
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--------------~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~   69 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--------------VIGMIDGG--FLPNPVVADDGSFIAHASTVFS   69 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--------------EEEEEEEC--SSCEEEECTTSSCEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc--------------EEEEEECC--CCCceEEcCCCCEEEEEeCCCc
Confidence            345689999876543     34469999998876              44555433  334799999999876543    


Q ss_pred             ------CCCcEEEEeCCCCCChhh
Q psy11100         90 ------ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        90 ------~~~~i~~w~~~~~~~~~~  107 (110)
                            .++.|.+||..+++...+
T Consensus        70 ~~~~g~~d~~v~v~D~~t~~~~~~   93 (355)
T d2bbkh_          70 RIARGERTDYVEVFDPVTLLPTAD   93 (355)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             cccccCCCCEEEEEECCCCCEEEE
Confidence                  467899999998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=2.6e-06  Score=53.19  Aligned_cols=75  Identities=11%  Similarity=-0.110  Sum_probs=52.9

Q ss_pred             EEEEecCCCEEEEEe----------cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC-------CCeEEEEEcCC
Q psy11100         19 CLAWHQNQGWIAVGG----------DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-------GKVRAIIWNEQ   81 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~   81 (110)
                      .++|+|||+.++..+          .++.|.+||.....              ....+..+.       .....++|+||
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--------------~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--------------EEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--------------EeeeecCCccceecccCCccceEECCC
Confidence            478999999887654          35679999998775              223232211       12235899999


Q ss_pred             CCeEEEec-CCCcEEEEeCCCCCChhh
Q psy11100         82 YEKLTSSD-ETGLIIVWMLYKCNDDDE  107 (110)
Q Consensus        82 ~~~l~s~~-~~~~i~~w~~~~~~~~~~  107 (110)
                      |++++.+. .++.+.+||+.+++...+
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEeEE
Confidence            99976654 578999999998776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.05  E-value=8.9e-06  Score=50.70  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=52.5

Q ss_pred             EEEEecCCCEEEEEecC---------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEE
Q psy11100         19 CLAWHQNQGWIAVGGDD---------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTS   87 (110)
Q Consensus        19 ~~~~~p~~~~l~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s   87 (110)
                      .++++|++..+.....+         ..+.+||.....              ....+. ....+..++|+|||+.  +++
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--------------~~~~~~-~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------------TSGPIS-NGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------------EEECCE-EEEEECEEEECCSSSCEEEEE
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc--------------EeEEec-CCCceeEEEECCCCCEEEEEE
Confidence            46788887765443222         247888888775              333333 2345778999999973  567


Q ss_pred             ecCCCcEEEEeCCCCCChhhh
Q psy11100         88 SDETGLIIVWMLYKCNDDDEW  108 (110)
Q Consensus        88 ~~~~~~i~~w~~~~~~~~~~~  108 (110)
                      ...++.|.+||..+++.+.++
T Consensus       333 ~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEEEC
T ss_pred             eCCCCeEEEEECCCCCEEEEE
Confidence            778899999999999876654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=6.4e-05  Score=48.16  Aligned_cols=71  Identities=11%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-----eccCCCeEEEEEcCCCCeEEEec---
Q psy11100         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-----QGHSGKVRAIIWNEQYEKLTSSD---   89 (110)
Q Consensus        18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~---   89 (110)
                      ..+.|.++++++.  ..++.+.+||...+.              ....+     ..+...|.++.|||||+.|+.+.   
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGN--------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCC--------------EEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCC--------------EEEEEchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            3578999998664  347889999999876              22222     33446789999999999988764   


Q ss_pred             ------CCCcEEEEeCCCCCC
Q psy11100         90 ------ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ------~~~~i~~w~~~~~~~  104 (110)
                            .++.+.+||+.+++.
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEE
T ss_pred             ceeeeccCceEEEEECCCCcc
Confidence                  246788999988764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.66  E-value=0.0003  Score=42.79  Aligned_cols=69  Identities=16%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      .+..++++|||+++++...++.|..++.....                ..+......+..++|+++|.++++...++.+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~----------------~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------QIHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------EEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE----------------EEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            57789999999998888888888777655332                33444456789999999999988877777777


Q ss_pred             EEeCC
Q psy11100         96 VWMLY  100 (110)
Q Consensus        96 ~w~~~  100 (110)
                      .++..
T Consensus        93 ~~~~~   97 (302)
T d2p4oa1          93 VVSLV   97 (302)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.39  E-value=0.00084  Score=39.49  Aligned_cols=67  Identities=9%  Similarity=-0.015  Sum_probs=46.2

Q ss_pred             EEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-C-----C
Q psy11100         21 AWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-T-----G   92 (110)
Q Consensus        21 ~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~-----~   92 (110)
                      ..+|+  |+.++..+ ++.|.+.|+..+.               ...+..+.......+|||||+.|+.... +     .
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~---------------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~   68 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS---------------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTA   68 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC---------------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC---------------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCce
Confidence            45788  99877654 5678888998775               3445556677889999999999775431 1     1


Q ss_pred             cEEEEeCCCCC
Q psy11100         93 LIIVWMLYKCN  103 (110)
Q Consensus        93 ~i~~w~~~~~~  103 (110)
                      .|.+++..++.
T Consensus        69 ~i~~~~~~~g~   79 (281)
T d1k32a2          69 DLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEEecCCc
Confidence            36666665553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.0033  Score=36.76  Aligned_cols=75  Identities=7%  Similarity=-0.040  Sum_probs=47.2

Q ss_pred             CCCceEEEEEecCCCEEEEEecC-CcEEEE--EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDD-GLLKVL--KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~-~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +........|+|++..++..+.+ +...+|  +.....                ..............|||||+.|+..+
T Consensus       169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------VQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------------EEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccceeEEEeecCCceeeeEeeccccc----------------ceEeecCccccceEECCCCCEEEEEE
Confidence            34456678899999987766554 344444  433332                22233345566789999999976443


Q ss_pred             ---CCCcEEEEeCCCCC
Q psy11100         90 ---ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ---~~~~i~~w~~~~~~  103 (110)
                         ....|.++++..+.
T Consensus       233 ~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         233 SQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EETTEEEEEEEETTSCC
T ss_pred             cCCCCcEEEEEECCCCC
Confidence               34468888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.19  E-value=0.0077  Score=37.44  Aligned_cols=78  Identities=9%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             CceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeE-EEecC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKL-TSSDE   90 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l-~s~~~   90 (110)
                      ..+.++.|+|+|++++..+. ...|.+++.....    ..       ......  .........++|+|+++++ ++...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g----~~-------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASG----EV-------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS----CE-------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC----ce-------eeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence            35788999999998877764 3467777755432    00       011111  1234567899999999985 56667


Q ss_pred             CCcEEEEeCCCCC
Q psy11100         91 TGLIIVWMLYKCN  103 (110)
Q Consensus        91 ~~~i~~w~~~~~~  103 (110)
                      ++.|.+|++..+.
T Consensus       214 ~~~V~v~~~~~~~  226 (365)
T d1jofa_         214 GNRICEYVIDPAT  226 (365)
T ss_dssp             TTEEEEEEECTTT
T ss_pred             CCEEEEEEecCCC
Confidence            8899999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0073  Score=35.21  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=42.5

Q ss_pred             CCCceEEEEEecCCCEEEEEecCC---cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +...+...+|||||+.|+......   .+.+.+.....               ...+..+........|+|+|..++...
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---------------VRQVASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------------EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---------------eeEEeeeecccccceecCCCCeeeEee
Confidence            345677899999999998765433   35555555443               244555667788899999999866543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.63  E-value=0.025  Score=33.90  Aligned_cols=78  Identities=19%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeEEEecC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKLTSSDE   90 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~   90 (110)
                      ..+.+..++++|+|+++++...++.+..++......             ....+  .......+.+.+.+++..+++-..
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-------------TVETLLTLPDAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-------------CEEEEEECTTCSCEEEEEESSSSEEEEEETT
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-------------ceeeccccCCccccceeEEccCCCEEeeccc
Confidence            446788999999999888887778887777654320             11111  123456788999999998888888


Q ss_pred             CCcEEEEeCCCCC
Q psy11100         91 TGLIIVWMLYKCN  103 (110)
Q Consensus        91 ~~~i~~w~~~~~~  103 (110)
                      ++.+..++...+.
T Consensus       133 ~~~i~~~~~~~~~  145 (302)
T d2p4oa1         133 RGAIWLIDVVQPS  145 (302)
T ss_dssp             TTEEEEEETTTTE
T ss_pred             cccceeeeccCCc
Confidence            8888887776553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.47  E-value=0.035  Score=33.67  Aligned_cols=71  Identities=8%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i   94 (110)
                      ..-.+++..+|++.++....+.|.+++.....              ....+........+++|.|+++ ++++...++.|
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~--------------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCE--------------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            34457788888877666667788888876554              2344455556788999999986 56777788888


Q ss_pred             EEEeCC
Q psy11100         95 IVWMLY  100 (110)
Q Consensus        95 ~~w~~~  100 (110)
                      ...++.
T Consensus       293 ~~~~~~  298 (314)
T d1pjxa_         293 WKFEWQ  298 (314)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            888754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.39  E-value=0.0056  Score=39.51  Aligned_cols=80  Identities=9%  Similarity=0.009  Sum_probs=51.5

Q ss_pred             eEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        17 v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ...+.++|||+++ +++..++++.+||+.....- .+..+    ....+.....-.......+|.++|..+.+...|+.|
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~----~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v  335 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE----LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQV  335 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC----GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC----cceEEEeecccccCcccceecCCceEEEcccccceE
Confidence            3457899999976 56677899999998753210 00000    000111111122335677899999888899999999


Q ss_pred             EEEeCC
Q psy11100         95 IVWMLY  100 (110)
Q Consensus        95 ~~w~~~  100 (110)
                      .-|++.
T Consensus       336 ~kw~~~  341 (441)
T d1qnia2         336 CKWNIA  341 (441)
T ss_dssp             EEEEHH
T ss_pred             EEeccc
Confidence            999974

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.17  E-value=0.015  Score=37.51  Aligned_cols=29  Identities=7%  Similarity=-0.013  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCe-EEEecCCCcEEEEeCCC
Q psy11100         73 VRAIIWNEQYEK-LTSSDETGLIIVWMLYK  101 (110)
Q Consensus        73 v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~  101 (110)
                      ...+.++|+|++ ++++..++++.+||+.+
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            467899999998 56777899999999875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0055  Score=39.53  Aligned_cols=75  Identities=9%  Similarity=0.043  Sum_probs=47.9

Q ss_pred             ceEEEEEecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         16 KVNCLAWHQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      .+....+|||+++++....         .+...++|+..+..            ..+.........+....|||+|..++
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~------------~~l~~~~~~~~~l~~~~wSPDG~~ia  129 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------QSLDPPEVSNAKLQYAGWGPKGQQLI  129 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce------------eeccCccCCccccceeeeccCCceEE
Confidence            5667789999998776542         35677888887650            01111112233455689999999988


Q ss_pred             EecCCCcEEEEeCCCCC
Q psy11100         87 SSDETGLIIVWMLYKCN  103 (110)
Q Consensus        87 s~~~~~~i~~w~~~~~~  103 (110)
                      -.. ++.|.+.+...+.
T Consensus       130 fv~-~~nl~~~~~~~~~  145 (465)
T d1xfda1         130 FIF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             EEE-TTEEEEESSSSSC
T ss_pred             EEe-cceEEEEecCCCc
Confidence            775 5567777665544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=95.67  E-value=0.038  Score=34.19  Aligned_cols=79  Identities=11%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             ceEEEEEecCCCEEEEEecC------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEe
Q psy11100         16 KVNCLAWHQNQGWIAVGGDD------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSS   88 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~   88 (110)
                      ....+.++|+|+++.++...      ..+..|++....    ...    .................++++| +|++++.+
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g----~~~----~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va  327 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG----SIE----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS----CEE----EEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC----cee----eEeEeeEEEcCCCCccEEEecCCCCCEEEEE
Confidence            45678999999998776431      236666665432    000    0000111111233456789998 78875555


Q ss_pred             -cCCCcEEEEeCCCC
Q psy11100         89 -DETGLIIVWMLYKC  102 (110)
Q Consensus        89 -~~~~~i~~w~~~~~  102 (110)
                       ..++.|.+|++...
T Consensus       328 ~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             eCCCCeEEEEEEeCC
Confidence             56789999987543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.63  E-value=0.066  Score=30.92  Aligned_cols=69  Identities=13%  Similarity=0.053  Sum_probs=38.4

Q ss_pred             CCCceEEEEEecCCCEEEEEec-CC-----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD-DG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      +.+.+...+|||||+.|+.... ++     .+.+.+...+..  .+....      ..............+|+|+|+.++
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--~~lt~~------~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--KRITYF------SGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--EECCCC------CEEEETTEECSEEEEECTTCCEEE
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--EEeeec------CCCccCccccccccccCCCCCEEE
Confidence            4567788999999998876532 22     255555555430  000000      000011123456789999999877


Q ss_pred             Eec
Q psy11100         87 SSD   89 (110)
Q Consensus        87 s~~   89 (110)
                      ...
T Consensus       111 ~~~  113 (281)
T d1k32a2         111 STD  113 (281)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.52  E-value=0.097  Score=30.55  Aligned_cols=73  Identities=8%  Similarity=-0.003  Sum_probs=50.2

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      .....++++|++...++...++.+..++.....              ........-.....+++.++|.++++....+.|
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i  205 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--------------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV  205 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC--------------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccce--------------eeeeeccccCCCccceeeeeeeeeeeecCCCEE
Confidence            455678899999877777777778888776543              111111233456788888888888777777778


Q ss_pred             EEEeCCC
Q psy11100         95 IVWMLYK  101 (110)
Q Consensus        95 ~~w~~~~  101 (110)
                      ..++...
T Consensus       206 ~~~~~~~  212 (260)
T d1rwia_         206 VKLLAGS  212 (260)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            7776544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.69  E-value=0.21  Score=30.05  Aligned_cols=85  Identities=7%  Similarity=-0.008  Sum_probs=50.7

Q ss_pred             eEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100         17 VNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII   95 (110)
Q Consensus        17 v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~   95 (110)
                      ...++|+|+++.|. +-...+.|..+++.....   .......   ............-.+++..+|.++++....+.|.
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~---~~~~~~~---~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~  252 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGV---TIQPFGA---TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVL  252 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS---SEEEEEE---EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCc---eeccccc---eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEE
Confidence            34589999998654 445567888888764320   0000000   0000111112345789999999888888889999


Q ss_pred             EEeCCCCCChhhh
Q psy11100         96 VWMLYKCNDDDEW  108 (110)
Q Consensus        96 ~w~~~~~~~~~~~  108 (110)
                      +++. +|+.+.++
T Consensus       253 ~~~p-~G~~l~~i  264 (319)
T d2dg1a1         253 VFNK-RGYPIGQI  264 (319)
T ss_dssp             EECT-TSCEEEEE
T ss_pred             EECC-CCcEEEEE
Confidence            9996 56655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.70  E-value=0.37  Score=28.97  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=40.5

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      +..++|.++|++.++-...+.|..++.....              ..............++++++|.++++..
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~--------------~~~~~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKE--------------IKRPFVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCC--------------EEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCe--------------EEEEEeCCCCCeeEEEECCCCCEEEEec
Confidence            4678899999876666667777777666543              2233334455678899999998876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.49  E-value=0.36  Score=28.26  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=50.3

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEec-
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSSD-   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~-   89 (110)
                      +......+++.++++.+++....+.|.+++....               .+.++.  +.......+++.++|.++++-. 
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---------------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------------YLRQIGGEGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------------EEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecCCc---------------eeeeecccccccCCcccccccCCeEEEEECC
Confidence            4456677888888888777777888888887643               233332  2334567888889988766543 


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11100         90 ETGLIIVWMLYKCND  104 (110)
Q Consensus        90 ~~~~i~~w~~~~~~~  104 (110)
                      .+..|.+++. +|+.
T Consensus       220 ~~~~v~~f~~-~G~~  233 (279)
T d1q7fa_         220 NNFNLTIFTQ-DGQL  233 (279)
T ss_dssp             SSCEEEEECT-TSCE
T ss_pred             CCcEEEEECC-CCCE
Confidence            3446777763 3443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.42  E-value=0.36  Score=27.98  Aligned_cols=73  Identities=7%  Similarity=-0.066  Sum_probs=47.6

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEecCC
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSSDET   91 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~~   91 (110)
                      .......+++.++|.+.++-...+.+..++.....               ...... .-.....++++++|.++++-..+
T Consensus       180 ~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---------------~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         180 DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---------------STVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---------------CEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe---------------EEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            44556778888888877776666667766554332               111211 22456789999999887776667


Q ss_pred             CcEEEEeCC
Q psy11100         92 GLIIVWMLY  100 (110)
Q Consensus        92 ~~i~~w~~~  100 (110)
                      +.|+..+..
T Consensus       245 ~rI~~i~~~  253 (260)
T d1rwia_         245 DRVVKLTSL  253 (260)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEeCC
Confidence            777766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.1  Score=33.46  Aligned_cols=31  Identities=6%  Similarity=-0.030  Sum_probs=22.5

Q ss_pred             CceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG   46 (110)
Q Consensus        15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~   46 (110)
                      +.+....|||||+.++... ++.+.+.+...+
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~  144 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK  144 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCC
Confidence            3455578999999987765 567877776654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.32  E-value=0.49  Score=29.66  Aligned_cols=62  Identities=19%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             CCCCceEEEEEecCCCEEEEE-ecCC----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100         12 PNNTKVNCLAWHQNQGWIAVG-GDDG----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT   86 (110)
Q Consensus        12 ~h~~~v~~~~~~p~~~~l~~~-~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   86 (110)
                      ++.-.+...+++|++++++.+ +.+|    .++++|+.++..             ....+..  .....++|.+++..|.
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~-------------~~~~i~~--~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-------------LPDVLER--VKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-------------EEEEEEE--ECSCCEEECTTSSEEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCccee-------------ccccccc--ccccceEEcCCCCEEE
Confidence            343344567789999987654 3344    589999998750             1112221  1124688999998765


Q ss_pred             Ee
Q psy11100         87 SS   88 (110)
Q Consensus        87 s~   88 (110)
                      ..
T Consensus       187 Y~  188 (430)
T d1qfma1         187 YN  188 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.05  E-value=0.68  Score=27.75  Aligned_cols=34  Identities=12%  Similarity=0.011  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100         73 VRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD  106 (110)
Q Consensus        73 v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~  106 (110)
                      .-.+++..+|+++++....+.|.++|...+....
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~  261 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM  261 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE
Confidence            4578899999988887778899999988776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.47  E-value=0.72  Score=26.90  Aligned_cols=75  Identities=8%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             CCCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEec
Q psy11100         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSSD   89 (110)
Q Consensus        13 h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~   89 (110)
                      .......+++.++|+.+++-.. +..|.+++.. +.              .+..+..  .......+++.++|.++++. 
T Consensus       198 ~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~--------------~~~~~~~~~~~~~p~~vav~~dG~l~V~~-  261 (279)
T d1q7fa_         198 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ--------------LISALESKVKHAQCFDVALMDDGSVVLAS-  261 (279)
T ss_dssp             TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC--------------EEEEEEESSCCSCEEEEEEETTTEEEEEE-
T ss_pred             cccCCcccccccCCeEEEEECCCCcEEEEECCC-CC--------------EEEEEeCCCCCCCEeEEEEeCCCcEEEEe-
Confidence            3445778899999987665433 3457777644 32              2333322  23457789999999876654 


Q ss_pred             CCCcEEEEeCCCCC
Q psy11100         90 ETGLIIVWMLYKCN  103 (110)
Q Consensus        90 ~~~~i~~w~~~~~~  103 (110)
                      .+..|++|......
T Consensus       262 ~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         262 KDYRLYIYRYVQLA  275 (279)
T ss_dssp             TTTEEEEEECSCCC
T ss_pred             CCCeEEEEEeeeec
Confidence            68899999887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.18  E-value=1.8  Score=25.52  Aligned_cols=85  Identities=11%  Similarity=0.001  Sum_probs=48.4

Q ss_pred             ceEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100         16 KVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI   94 (110)
Q Consensus        16 ~v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i   94 (110)
                      ....++|++++..+. +-+..+.|..+++......   . .. . ..............-.+++..+|.+.++.-..+.|
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~---~-~~-~-~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V  222 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL---P-TG-K-AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  222 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC---B-SS-C-CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccc---c-cc-c-eEEEeccCcccccccceEEcCCCCEEeeeeCCCce
Confidence            345688899887654 4445677888877533200   0 00 0 00111122233456678888888887776667788


Q ss_pred             EEEeCCCCCChhh
Q psy11100         95 IVWMLYKCNDDDE  107 (110)
Q Consensus        95 ~~w~~~~~~~~~~  107 (110)
                      ..+|. +|+.+.+
T Consensus       223 ~~~dp-~G~~~~~  234 (295)
T d2ghsa1         223 DRYDT-DGNHIAR  234 (295)
T ss_dssp             EEECT-TCCEEEE
T ss_pred             EEecC-CCcEeeE
Confidence            88885 4554443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.42  E-value=5.3  Score=25.59  Aligned_cols=29  Identities=3%  Similarity=-0.051  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCe-EEEecCCCcEEEEeCCC
Q psy11100         73 VRAIIWNEQYEK-LTSSDETGLIIVWMLYK  101 (110)
Q Consensus        73 v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~  101 (110)
                      ...+..+|||++ ++++..+.++.++|+++
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            446889999999 55666799999999875