Psyllid ID: psy11102

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDKPS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALEScarklpdsspllkpmgEIFVKYGLCEQAVYVfdknkhkssqwltvvqdkps
Flexible Loop (DISEMBL)
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKnkhkssqwltvvqdkps
Low Complexity Region (SEG)
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDKPS
Disordered region (IsUnstruct)
*******AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTV******
Disordered Region (DISOPRED)
****VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ****
Disordered Region (DISEMBL)
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDKPS
Disordered Region (DISPRO)
*TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDKPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q8BND3	1181	WD repeat-containing prot	yes	N/A	0.735	0.054	0.421	3e-07
A6N6J5	1170	WD repeat-containing prot	no	N/A	0.735	0.054	0.421	3e-07
Q9P2L0	1181	WD repeat-containing prot	yes	N/A	0.735	0.054	0.406	1e-06

>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 818 NAVQYYVKGRNQERLAECYYMLEDYEGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVS 877

Query: 67  VFDK 70
            F K
Sbjct: 878 AFLK 881

May promote CASP3 activation and TNF-stimulated apoptosis (By similarity). Required for ciliogenesis.
Mus musculus (taxid: 10090)

>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 807 NAVQYYVKGRNQERLAECYYMLEDYEGLENLANSLPENHKLLPEIAQMFVRVGMCEQAVS 866

Query: 67  VFDK 70
            F K
Sbjct: 867 AFLK 870

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY +    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 818 NAVQYYVQGRNQERLAECYYMLEDYEGLENLAISLPENHKLLPEIAQMFVRVGMCEQAVT 877

Query: 67  VFDK 70
            F K
Sbjct: 878 AFLK 881

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
383864328	1183	PREDICTED: WD repeat-containing protein	0.724	0.053	0.476	4e-08
393906091	1130	WD repeat protein 35 [Loa loa]	0.712	0.054	0.467	1e-07
312087100	711	hypothetical protein LOAG_09759 [Loa loa	0.712	0.087	0.467	1e-07
195403421	1190	GJ16079 [Drosophila virilis] gi|19414062	0.724	0.052	0.444	2e-07
66515913	1185	PREDICTED: WD repeat-containing protein	0.724	0.053	0.460	2e-07
380012543	1185	PREDICTED: WD repeat-containing protein	0.724	0.053	0.460	2e-07
324511121	433	WD repeat-containing protein 35 [Ascaris	0.724	0.145	0.476	3e-07
340503426	1187	WD repeat protein [Ichthyophthirius mult	0.735	0.053	0.468	4e-07
195428849	1224	GK17561 [Drosophila willistoni] gi|19415	0.724	0.051	0.412	4e-07
290992023	1186	hypothetical protein NAEGRDRAFT_32701 [N	0.643	0.047	0.446	7e-07

>gi|383864328|ref|XP_003707631.1| PREDICTED: WD repeat-containing protein 35-like [Megachile rotundata]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 37/63 (58%)

Query: 8   AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
           AREYYEK    EKLI  Y +L DF  L    ++LPD SPLLK +  +    G+C QAV  
Sbjct: 816 AREYYEKSRNLEKLIDCYYKLEDFVQLAGTVQQLPDKSPLLKTVARMLASVGMCSQAVAA 875

Query: 68  FDK 70
           + K
Sbjct: 876 YIK 878

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|393906091|gb|EJD74175.1| WD repeat protein 35 [Loa loa]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
           QA  YYEK   +E+LI  Y    +++ +E  A++LPD   L+  +GEIFV  GLCEQAV 
Sbjct: 754 QAESYYEKGENHEQLIRCYLMDDNYDNMELLAKRLPDGDKLISEIGEIFVSAGLCEQAVQ 813

Query: 67  VF 68
            F
Sbjct: 814 CF 815

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312087100|ref|XP_003145337.1| hypothetical protein LOAG_09759 [Loa loa]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
           QA  YYEK   +E+LI  Y    +++ +E  A++LPD   L+  +GEIFV  GLCEQAV 
Sbjct: 335 QAESYYEKGENHEQLIRCYLMDDNYDNMELLAKRLPDGDKLISEIGEIFVSAGLCEQAVQ 394

Query: 67  VF 68
            F
Sbjct: 395 CF 396

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|195403421|ref|XP_002060288.1| GJ16079 [Drosophila virilis] gi|194140627|gb|EDW57101.1| GJ16079 [Drosophila virilis]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query: 8   AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
           A+EYYEK H  E  I     L  F+ LE C  KLP+ SPLL  + E+ V  G+C +AV  
Sbjct: 833 AKEYYEKSHYLEGSIEALYHLEQFDELEKCVDKLPEKSPLLTKLAEMLVSVGMCSEAVQA 892

Query: 68  FDK 70
           + K
Sbjct: 893 YLK 895

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66515913|ref|XP_394812.2| PREDICTED: WD repeat-containing protein 35-like [Apis mellifera]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 8   AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
           A+EYYEK    EKLI  Y +L DF  L    ++LPD SPLLK +  +    G+C QAV  
Sbjct: 818 AKEYYEKTRNLEKLIECYYKLEDFAQLAGIVQQLPDKSPLLKTVARMLGSVGMCSQAVAA 877

Query: 68  FDK 70
           + K
Sbjct: 878 YIK 880

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012543|ref|XP_003690339.1| PREDICTED: WD repeat-containing protein 35-like [Apis florea]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 8   AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
           A+EYYEK    EKLI  Y +L DF  L    ++LPD SPLLK +  +    G+C QAV  
Sbjct: 818 AKEYYEKTRNLEKLIECYYKLEDFAQLAGIVQQLPDKSPLLKTVARMLGSVGMCSQAVAA 877

Query: 68  FDK 70
           + K
Sbjct: 878 YIK 880

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324511121|gb|ADY44640.1| WD repeat-containing protein 35 [Ascaris suum]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%)

Query: 6   SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAV 65
           +QA  YYEK   Y +LI  Y    ++E LE+ +++LPD   LLK +GEIF   GLCEQAV
Sbjct: 56  TQAAVYYEKGENYNQLIRCYLMNDNYEKLENLSKRLPDGHELLKMIGEIFGGAGLCEQAV 115

Query: 66  YVF 68
             +
Sbjct: 116 NCY 118

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|340503426|gb|EGR30016.1| WD repeat protein [Ichthyophthirius multifiliis]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
           +A E YE     E LI  YT + DFEALE    ++P+ S LLK +G++F + GLCEQAV 
Sbjct: 800 KAAECYELAKYNEGLIVCYTRMEDFEALEKIILQIPERSELLKNLGDVFQQMGLCEQAVK 859

Query: 67  VFDK 70
            + K
Sbjct: 860 CYQK 863

Source: Ichthyophthirius multifiliis

Species: Ichthyophthirius multifiliis

Genus: Ichthyophthirius

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|195428849|ref|XP_002062478.1| GK17561 [Drosophila willistoni] gi|194158563|gb|EDW73464.1| GK17561 [Drosophila willistoni]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 8   AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
           A+EYYEK H  E  +     L  F+ LE C  KLPD SPLL  + ++    G+C +AV  
Sbjct: 851 AKEYYEKSHYIEGFMDALYHLEQFDDLEKCVEKLPDKSPLLTKLADMLASVGMCSEAVQA 910

Query: 68  FDK 70
           + K
Sbjct: 911 YLK 913

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290992023|ref|XP_002678634.1| hypothetical protein NAEGRDRAFT_32701 [Naegleria gruberi] gi|284092247|gb|EFC45890.1| hypothetical protein NAEGRDRAFT_32701 [Naegleria gruberi]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 10  EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAV 65
           ++Y K   +EKLI  Y  +GDFE+LE     LP+++PLL P+GE     GL  QA+
Sbjct: 814 QFYVKARNFEKLIEAYYRIGDFESLERMVDDLPENNPLLHPIGEKLASVGLSTQAI 869

Source: Naegleria gruberi

Species: Naegleria gruberi

Genus: Naegleria

Family: Vahlkampfiidae

Order: Schizopyrenida

Class: Heterolobosea

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0035264	1205	Oseg4 "Oseg4" [Drosophila mela	0.666	0.048	0.431	1.4e-07
RGD|1564116	1170	Wdr35 "WD repeat domain 35" [R	0.793	0.058	0.414	3.7e-07
MGI|MGI:1921932	1181	Wdr35 "WD repeat domain 35" [M	0.793	0.058	0.414	3.7e-07
UNIPROTKB|F1SCU2	1186	WDR35 "Uncharacterized protein	0.793	0.058	0.4	7.8e-07
UNIPROTKB|E1BWD7	1180	WDR35 "Uncharacterized protein	0.793	0.058	0.385	2.1e-06
ZFIN|ZDB-GENE-060810-148	1203	wdr35 "WD repeat domain 35" [D	0.793	0.057	0.4	2.1e-06
UNIPROTKB|Q9P2L0	1181	WDR35 "WD repeat-containing pr	0.724	0.053	0.412	4.3e-06

FB|FBgn0035264 Oseg4 "Oseg4" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAV 65
             AREYYEK H  E  +     L  F+ LE C  +LP+ SPLL  + E+    G+C +AV
Sbjct:   832 AREYYEKSHYLEGYMEALYHLEQFDDLEKCVERLPEKSPLLPKLAEMLASVGMCSEAV 889

GO:0003674 "molecular_function" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

RGD|1564116 Wdr35 "WD repeat domain 35" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV  
Sbjct:   808 AVQYYVKGRNQERLAECYYMLEDYEGLENLANSLPENHKLLPEIAQMFVRVGMCEQAVSA 867

Query:    68 FDK-NKHKSS 76
             F K N+ K++
Sbjct:   868 FLKCNQPKAA 877

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0030991 "intraflagellar transport particle A" evidence=ISO;ISS

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

MGI|MGI:1921932 Wdr35 "WD repeat domain 35" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV  
Sbjct:   819 AVQYYVKGRNQERLAECYYMLEDYEGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVSA 878

Query:    68 FDK-NKHKSS 76
             F K N+ K++
Sbjct:   879 FLKCNQPKAA 888

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|F1SCU2 WDR35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/70 (40%), Positives = 43/70 (61%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY +    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV  
Sbjct:   824 AVQYYVQGRNQERLAECYYMLEDYEGLENLANSLPENHKLLPEIAQMFVRVGMCEQAVMA 883

Query:    68 FDK-NKHKSS 76
             F K N+ K++
Sbjct:   884 FLKCNQPKAA 893

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|E1BWD7 WDR35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY +    E+L   Y  L D++ LE+ A  LP+++ LL  +  +FV+ G+CEQAV  
Sbjct:   821 AVQYYVQGRNQERLAECYYMLEDYQGLENLANSLPENNKLLPDIAHMFVRVGMCEQAVSA 880

Query:    68 FDK-NKHKSS 76
             F K N+ K +
Sbjct:   881 FLKCNRPKDA 890

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

ZFIN|ZDB-GENE-060810-148 wdr35 "WD repeat domain 35" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY +    E+L   Y  L D++ LE  A  LP++  LL  +G++FV  G+CEQAV  
Sbjct:   841 AVQYYLQGRNQERLAECYYMLEDYDGLERLANSLPENHKLLPDIGQMFVTVGMCEQAVSA 900

Query:    68 FDK-NKHKSS 76
             F K N+ K++
Sbjct:   901 FLKCNQPKAA 910

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9P2L0 WDR35 "WD repeat-containing protein 35" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query:     8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV 67
             A +YY +    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV  
Sbjct:   819 AVQYYVQGRNQERLAECYYMLEDYEGLENLAISLPENHKLLPEIAQMFVRVGMCEQAVTA 878

Query:    68 FDK 70
             F K
Sbjct:   879 FLK 881


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.47    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.80u 0.10s 10.90t   Elapsed:  00:00:02
  Total cpu time:  10.81u 0.10s 10.91t   Elapsed:  00:00:02
  Start:  Thu Aug 15 15:43:47 2013   End:  Thu Aug 15 15:43:49 2013

GO:0030991 "intraflagellar transport particle A" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG2041|consensus	1189		99.94
KOG3617|consensus	1416		98.95
KOG1538|consensus	1081		98.32
KOG1920|consensus	1265		97.93
KOG1538|consensus	1081		97.44
KOG3616|consensus	1636		97.41
KOG3616|consensus	1636		97.4
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	97.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.25
KOG3617|consensus	1416		96.91
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.62
KOG0276|consensus	794		96.52
KOG2041|consensus	1189		96.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.41
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.2
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.64
PLN03077	857	Protein ECB2; Provisional	95.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.22
PF13371	73	TPR_9: Tetratricopeptide repeat	95.2
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.19
PRK15359	144	type III secretion system chaperone protein SscB;	95.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.78
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.68
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	94.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	94.34
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.82
KOG0553|consensus	304		93.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	93.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.95
KOG1920|consensus	1265		92.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.71
KOG2280|consensus	829		92.47
KOG0548|consensus	539		92.2
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.14
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.85
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.7
PRK10803	263	tol-pal system protein YbgF; Provisional	91.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	91.68
PF12688	120	TPR_5: Tetratrico peptide repeat	91.67
KOG2003|consensus	840		91.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	91.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.59
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	91.44
PLN03077	857	Protein ECB2; Provisional	91.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	91.31
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.93
KOG2076|consensus	895		90.92
KOG4626|consensus	966		90.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	90.67
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	90.55
PLN03218	1060	maturation of RBCL 1; Provisional	90.34
KOG3060|consensus	289		90.28
PLN03218	1060	maturation of RBCL 1; Provisional	90.26
KOG1586|consensus	288		90.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	89.95
PRK11189	296	lipoprotein NlpI; Provisional	89.88
PF03704	146	BTAD: Bacterial transcriptional activator domain;	89.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	89.84
PRK12370	553	invasion protein regulator; Provisional	89.66
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	88.67
KOG1585|consensus	308		88.66
PRK15359	144	type III secretion system chaperone protein SscB;	88.36
KOG1586|consensus	288		88.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	87.84
PF09145	46	Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015	87.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	87.47
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	87.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.03
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	85.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.5
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	85.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	85.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	84.84
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	84.69
PRK12370	553	invasion protein regulator; Provisional	84.52
KOG1155|consensus	559		84.3
PF12931	284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	83.77
KOG0547|consensus	606		83.57
KOG1125|consensus	579		83.15
KOG0543|consensus	397		82.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	82.39
PF12854	34	PPR_1: PPR repeat	82.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	81.72
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	80.82
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	80.62
PRK14574	822	hmsH outer membrane protein; Provisional	80.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	80.21

>KOG2041|consensus

Probab=99.94  E-value=1.3e-27  Score=193.97  Aligned_cols=83  Identities=31%  Similarity=0.447  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVV   82 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv   82 (87)
                      +.|++|++||+++||.+..|||||++++|++||.+++.||++|++|+.+|+||+++|||+|||+||+|++++|+|+.+||
T Consensus       810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv  889 (1189)
T KOG2041|consen  810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCV  889 (1189)
T ss_pred             HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy11102         83 QDK   85 (87)
Q Consensus        83 ~~~   85 (87)
                      ++|
T Consensus       890 ~Ln  892 (1189)
T KOG2041|consen  890 ELN  892 (1189)
T ss_pred             HHH
Confidence            987

>KOG3617|consensus

Probab=98.95  E-value=2.4e-09  Score=89.70  Aligned_cols=84  Identities=19%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC-C-chHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS-S-PLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLT   80 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~-~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~   80 (87)
                      ++..+|+.+|.++|-+.|+.|+.++.++|..|+-|+..|+++ + ++|..|+++|-+.-+++.||+..++...+..|+++
T Consensus      1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred             hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999985 3 88999999999999999999999999999999999


Q ss_pred             HhhcCC
Q psy11102         81 VVQDKP   86 (87)
Q Consensus        81 cv~~~~   86 (87)
                      |.+.|-
T Consensus      1116 C~~~nv 1121 (1416)
T KOG3617|consen 1116 CKNRNV 1121 (1416)
T ss_pred             HhcCCC
Confidence            998764

>KOG1538|consensus

Probab=98.32  E-value=1.1e-06  Score=72.72  Aligned_cols=83  Identities=20%  Similarity=0.055  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTV   81 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~c   81 (87)
                      +.+..|+++...+|+..|+|++...+||.|-|-+|.+.|+.. .+-|..++..|.+..-..-|.+.|.|.||.++.+++|
T Consensus       704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlH  783 (1081)
T KOG1538|consen  704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLH  783 (1081)
T ss_pred             CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhhe
Confidence            456789999999999999999999999999999999999985 5779999999999999999999999999999999999


Q ss_pred             hhcC
Q psy11102         82 VQDK   85 (87)
Q Consensus        82 v~~~   85 (87)
                      |+..
T Consensus       784 ve~~  787 (1081)
T KOG1538|consen  784 VETQ  787 (1081)
T ss_pred             eecc
Confidence            9854

>KOG1920|consensus

Probab=97.93  E-value=6.4e-05  Score=64.92  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC-CchH---HHHHHHHH-hCCChHHHHHHHHhcCCHHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS-SPLL---KPMGEIFV-KYGLCEQAVYVFDKNKHKSSQ   77 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL---~~ia~~F~-~~G~~~~Av~aylk~gd~k~a   77 (87)
                      +.|++|+-.|..+|+.+||+.||-+.+||.+...+...+..+ +++.   .+++..+. +..++|-|.-.-+-++|++.|
T Consensus       953 ~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a 1032 (1265)
T KOG1920|consen  953 LMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA 1032 (1265)
T ss_pred             ccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH
Confidence            468999999999999999999999999999999999999886 4544   45555553 445555555566667777777


Q ss_pred             HHHHhh
Q psy11102         78 WLTVVQ   83 (87)
Q Consensus        78 i~~cv~   83 (87)
                      +.+.++
T Consensus      1033 v~ll~k 1038 (1265)
T KOG1920|consen 1033 VALLCK 1038 (1265)
T ss_pred             HHHHhh
Confidence            776654

>KOG1538|consensus

Probab=97.44  E-value=0.00054  Score=57.27  Aligned_cols=83  Identities=8%  Similarity=0.050  Sum_probs=77.1

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC-C-CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD-S-SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWL   79 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~-~-~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~   79 (87)
                      ++++.+|+.+|.++|.-.++.|+|.-+-+||...+.+.+-.+ . ..|+.+=|++-.++....-|.+..+-+|+..+||+
T Consensus       645 ~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~  724 (1081)
T KOG1538|consen  645 QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIE  724 (1081)
T ss_pred             hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhh
Confidence            578999999999999999999999999999999999888654 3 58899999999999999999999999999999999


Q ss_pred             HHhhc
Q psy11102         80 TVVQD   84 (87)
Q Consensus        80 ~cv~~   84 (87)
                      .|.++
T Consensus       725 i~~d~  729 (1081)
T KOG1538|consen  725 ICGDH  729 (1081)
T ss_pred             hhhcc
Confidence            99875

>KOG3616|consensus

Probab=97.41  E-value=0.00052  Score=58.29  Aligned_cols=84  Identities=19%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhh-CCCC-CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARK-LPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWL   79 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~-L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~   79 (87)
                      .+-|++|-.+|++-+|+.|+++||-+-.-|.+-.+|+|- .|+. .+|=+.-|..+...|+.+.||.-|+.+++.++||+
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            356899999999999999999999999999999999997 5775 68889999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy11102         80 TVVQDK   85 (87)
Q Consensus        80 ~cv~~~   85 (87)
                      ..+..+
T Consensus       741 aai~ak  746 (1636)
T KOG3616|consen  741 AAIGAK  746 (1636)
T ss_pred             HHhhhh
Confidence            988754

>KOG3616|consensus

Probab=97.40  E-value=0.00071  Score=57.51  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC-C--CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD-S--SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWL   79 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~-~--~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~   79 (87)
                      ++++.|+..|..++...|+|+.......|.+-..+++++.+ +  +.--..|++.+.+.|.++-|-+.|.+.|.++.||+
T Consensus       720 ~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~  799 (1636)
T KOG3616|consen  720 GQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID  799 (1636)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence            67899999999999999999999999999999999999987 3  58889999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy11102         80 TVVQDK   85 (87)
Q Consensus        80 ~cv~~~   85 (87)
                      ++-+.+
T Consensus       800 my~k~~  805 (1636)
T KOG3616|consen  800 MYGKAG  805 (1636)
T ss_pred             HHhccc
Confidence            986543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=6.2e-05  Score=49.19  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhh
Q psy11102         17 CYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ   83 (87)
Q Consensus        17 n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~   83 (87)
                      -...++.+|.+.++.+.|++..+....  =-+..++..+.+.|++++|+..|.|.|+++.|++++.+
T Consensus        44 ~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~  108 (143)
T PF00637_consen   44 LHTLLLELYIKYDPYEKLLEFLKTSNN--YDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHK  108 (143)
T ss_dssp             HHHHHHHHHHCTTTCCHHHHTTTSSSS--S-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSS
T ss_pred             HHHHHHHHHHhcCCchHHHHHcccccc--cCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHH
Confidence            357899999999999999999995554  22458888889999999999999999999999997444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.25  E-value=0.00073  Score=40.61  Aligned_cols=69  Identities=25%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             chhHHHHHHHHHHhccHH----------HHHHHHHHhCCHHHHHHHHhhCCC--CC-chHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYE----------KLISVYTELGDFEALESCARKLPD--SS-PLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~----------k~ie~~~~~ed~d~L~~l~~~L~~--~~-~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .++|++|+.+|.+.-...          .++.||++.|+|+.-..+.+.++.  .+ ...-.+|.-+...|..++|+++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            578999999988753222          348999999999999999977432  22 45556688888888888888888


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      .|
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            66

>KOG3617|consensus

Probab=96.91  E-value=0.0061  Score=52.34  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCC-ChHHHHHHHHhcCCHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYG-LCEQAVYVFDKNKHKSSQWLT   80 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G-~~~~Av~aylk~gd~k~ai~~   80 (87)
                      .++..+|+.+|.++.-+..+|.++-.++.-|.|..++-.-  +-.-+...|.+|...| ....||..|-|+|-+-+|+++
T Consensus       980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s--~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen  980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS--GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc--CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHH
Confidence            4788999999999999999999999999999999987543  3344778899998888 999999999999999999998


Q ss_pred             Hhh
Q psy11102         81 VVQ   83 (87)
Q Consensus        81 cv~   83 (87)
                      .-+
T Consensus      1058 AF~ 1060 (1416)
T KOG3617|consen 1058 AFR 1060 (1416)
T ss_pred             HHh
Confidence            754

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.89  E-value=0.0069  Score=45.85  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             HHHHHHHhCCHHHHHHHHhh--CCCC-CchHHHH---------HHHHHhCCChHHHHHHHHhcCCHHHHHHHHhhcC
Q psy11102         21 LISVYTELGDFEALESCARK--LPDS-SPLLKPM---------GEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDK   85 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~--L~~~-~~lL~~i---------a~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~~~   85 (87)
                      -|..|...++||+|++++.+  -|-+ .|....|         ..+...+.. +.-|+.|+++|+++.|++.|++.+
T Consensus       214 ki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  214 KIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcC
Confidence            36788999999999999975  2223 2333222         223333444 777899999999999999999876

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.62  E-value=0.017  Score=37.92  Aligned_cols=70  Identities=17%  Similarity=0.321  Sum_probs=56.9

Q ss_pred             chhHHHHHHHHHHhccH-----------HHHHHHHHHhCCHHHHHHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY-----------EKLISVYTELGDFEALESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------~k~ie~~~~~ed~d~L~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      .+++++|...|.+.-+.           -+++.++...|+||.-..+.+..++.   .......|+.+...|..++|+++
T Consensus        61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47888899888766543           24789999999999999999888763   24577889999999999999999


Q ss_pred             HHhc
Q psy11102         68 FDKN   71 (87)
Q Consensus        68 ylk~   71 (87)
                      |.++
T Consensus       141 y~~A  144 (145)
T PF09976_consen  141 YQKA  144 (145)
T ss_pred             HHHh
Confidence            9763

>KOG0276|consensus

Probab=96.52  E-value=0.018  Score=47.84  Aligned_cols=81  Identities=9%  Similarity=-0.053  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVV   82 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv   82 (87)
                      .+|++=.++..+++++.++-||+.+..||.+|.-+-... -+.+.|..+|.-=.+.|...-|--+|...||+...+++-+
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~-g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSS-GNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhc-CChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence            589999999999999999999999999999998665443 3468899999999999999999999999999999999887


Q ss_pred             hc
Q psy11102         83 QD   84 (87)
Q Consensus        83 ~~   84 (87)
                      +-
T Consensus       746 ~t  747 (794)
T KOG0276|consen  746 ST  747 (794)
T ss_pred             hc
Confidence            65

>KOG2041|consensus

Probab=96.50  E-value=0.01  Score=50.32  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC--CCc----hHHHHHHHHHhCCChHHHHHHHHhcCCHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD--SSP----LLKPMGEIFVKYGLCEQAVYVFDKNKHKSS   76 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~--~~~----lL~~ia~~F~~~G~~~~Av~aylk~gd~k~   76 (87)
                      |.+++|-.+|--+..-.-+|+++-++|||-..-+|.|.=..  ++.    ....||+.|...--.+.|++.|.++|+...
T Consensus       748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~  827 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN  827 (1189)
T ss_pred             cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence            57899999999999999999999999999999999998433  233    356799999999999999999999999999


Q ss_pred             HHHHHhhcC
Q psy11102         77 QWLTVVQDK   85 (87)
Q Consensus        77 ai~~cv~~~   85 (87)
                      .+++..+++
T Consensus       828 ~~ecly~le  836 (1189)
T KOG2041|consen  828 QIECLYRLE  836 (1189)
T ss_pred             HHHHHHHHH
Confidence            999877654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.41  E-value=0.046  Score=43.20  Aligned_cols=82  Identities=13%  Similarity=-0.043  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVV   82 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv   82 (87)
                      ..|+.=.+...+.||++-|.+||.+.+||++|.=|--...+ .+-|.+++..=...|...-|-.+++-.||++.-+++-.
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~-~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGD-REKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT--HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCC-HHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHH
Confidence            46888889999999999999999999999999887776654 46788999998999999999999999999999888876


Q ss_pred             hcC
Q psy11102         83 QDK   85 (87)
Q Consensus        83 ~~~   85 (87)
                      +.+
T Consensus       427 ~~~  429 (443)
T PF04053_consen  427 ETG  429 (443)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.20  E-value=0.057  Score=43.14  Aligned_cols=69  Identities=19%  Similarity=0.230  Sum_probs=52.3

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..+++..|+++.-....+..    |.+...+..+|..+...|..++|++.|.
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4678888888877732        224567888899998877776553    4455778889999999999999988775


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       492 ~  492 (615)
T TIGR00990       492 T  492 (615)
T ss_pred             H
Confidence            5

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.08  E-value=0.0092  Score=43.58  Aligned_cols=14  Identities=29%  Similarity=0.330  Sum_probs=9.4

Q ss_pred             hHHHHHHHHHHhcc
Q psy11102          4 LVSQAREYYEKCHC   17 (87)
Q Consensus         4 ~w~~A~~yY~~~~n   17 (87)
                      +|+.|+++|.+++|
T Consensus        30 ~~e~Aa~~y~~Aa~   43 (282)
T PF14938_consen   30 DYEEAADLYEKAAN   43 (282)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            67777777766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.04  E-value=0.058  Score=42.62  Aligned_cols=83  Identities=19%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLT   80 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~   80 (87)
                      .++.+-|.+.|.++++++++.=.|.-.|+-++|.+|+....+. .--+.-.+.++  .|..++-|+.+++.|+...|-=+
T Consensus       360 ~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~--lgd~~~cv~lL~~~~~~~~A~~~  437 (443)
T PF04053_consen  360 QGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALL--LGDVEECVDLLIETGRLPEAALF  437 (443)
T ss_dssp             TTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHH--HT-HHHHHHHHHHTT-HHHHHHH
T ss_pred             cCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHH--cCCHHHHHHHHHHcCCchHHHHH
Confidence            4789999999999999999999999999999999999887654 33333333333  39999999999999998887665


Q ss_pred             HhhcCC
Q psy11102         81 VVQDKP   86 (87)
Q Consensus        81 cv~~~~   86 (87)
                      .....|
T Consensus       438 A~ty~~  443 (443)
T PF04053_consen  438 ARTYGP  443 (443)
T ss_dssp             HHHTT-
T ss_pred             HHhcCC
Confidence            554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.94  E-value=0.013  Score=42.10  Aligned_cols=70  Identities=23%  Similarity=0.349  Sum_probs=38.7

Q ss_pred             chhHHHHHHHHHHh-------ccHHHHHHHHHHhCCHHHHHHHHhhC---C--CC-CchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKC-------HCYEKLISVYTELGDFEALESCARKL---P--DS-SPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~-------~n~~k~ie~~~~~ed~d~L~~l~~~L---~--~~-~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .+++++|.+++.++       ..+..+++++...++++.+.+++..+   +  +. ..++...|..+...|..+.|+++|
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46677787777665       45667889999999999999998874   2  22 367889999999999999999988


Q ss_pred             Hhc
Q psy11102         69 DKN   71 (87)
Q Consensus        69 lk~   71 (87)
                      -++
T Consensus       170 ~~a  172 (280)
T PF13429_consen  170 RKA  172 (280)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.82  E-value=0.11  Score=41.46  Aligned_cols=70  Identities=21%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             chhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++=        -+-....++...|+++.-....+..    |++...+..+|..+...|..++|+..|.
T Consensus       344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  423 (615)
T TIGR00990       344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ  423 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            367788888887752        2345667778888888776655442    4445778888888888999998888775


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       424 ka  425 (615)
T TIGR00990       424 KS  425 (615)
T ss_pred             HH
Confidence            54

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.64  E-value=0.068  Score=40.56  Aligned_cols=70  Identities=19%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|+.|+++|.++=.        +-....+|..+|+|+.-....+.+    |........+|..+...|..+.|+.+|.
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4688889988888732        445677889999998877666553    4445778889999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        95 ~a   96 (356)
T PLN03088         95 KG   96 (356)
T ss_pred             HH
Confidence            64

>PLN03077 Protein ECB2; Provisional

Probab=95.36  E-value=0.27  Score=40.78  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHH
Q psy11102         19 EKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQA   64 (87)
Q Consensus        19 ~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~A   64 (87)
                      ..+|++|.+.|++++-.++.+.+++. ...-..+..-+...|..++|
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA  474 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA  474 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence            35677777888888888877777663 23334444444455554444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.34  E-value=0.043  Score=30.93  Aligned_cols=53  Identities=17%  Similarity=0.346  Sum_probs=37.8

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..|.+.|+++++++++         +++++.-|++...+..+|..+...|..++|+..|.++
T Consensus         5 ~~~~~~g~~~~A~~~~---------~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAF---------EQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHCTHHHHHHHHH---------HHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH---------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455556666666554         3344445777789999999999999999999888654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.31  E-value=0.15  Score=32.18  Aligned_cols=69  Identities=16%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|.++|.+.-.        +..+..+++..++|+.-....+..    |++......+|..+...|..+.|+..|.
T Consensus        30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567777777766532        335777888888888766544432    4445667778888888899888888775


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       110 ~  110 (135)
T TIGR02552       110 L  110 (135)
T ss_pred             H
Confidence            4

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.22  E-value=0.041  Score=31.24  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCC-ChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYG-LCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G-~~~~Av~aylk   70 (87)
                      ..|..-...|.+-|++++++.+|-+.=++         -|++...+-.+|..+...| ..++|++.|.+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            34666677777888888888876544322         3666789999999999999 79999988865

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.20  E-value=0.067  Score=30.60  Aligned_cols=49  Identities=18%  Similarity=0.321  Sum_probs=35.5

Q ss_pred             HHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         23 SVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ++|...++|+...+.++.    -|++..+....|..+...|.+++|++.|.++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            345555555554444443    3667788899999999999999999988654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.19  E-value=0.28  Score=31.71  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhhc
Q psy11102         17 CYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQD   84 (87)
Q Consensus        17 n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~~   84 (87)
                      -+..+|++|.+.+.-+.++-+....  +.=-+..++....+.|+.++|+..|.|.|+.+.|+++.++.
T Consensus        43 ~~~~li~ly~~~~~~~ll~~l~~~~--~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~  108 (140)
T smart00299       43 LQTKLIELYAKYDPQKEIERLDNKS--NHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH  108 (140)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHhcc--ccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc
Confidence            3456677776665433333333121  12225566677777777777777777777777777777654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.16  E-value=0.16  Score=33.56  Aligned_cols=50  Identities=12%  Similarity=0.084  Sum_probs=23.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         21 LISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..++...|+++.-....+..    |.+...+..+|.-+...|..+.|+++|.+
T Consensus        64 lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~  117 (144)
T PRK15359         64 LAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQT  117 (144)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            333444444444443333331    22334455555555555555555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.12  E-value=0.22  Score=32.60  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHhcc----------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHC----------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n----------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +++++|.++|.++-.          ...+..+++..|+++.-....+..    |.+...+..+|..+...|..++|++.|
T Consensus       113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL  192 (234)
T ss_pred             ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            456666666666521          223456667777777665554442    333345666777777777777777666


Q ss_pred             Hhc
Q psy11102         69 DKN   71 (87)
Q Consensus        69 lk~   71 (87)
                      .++
T Consensus       193 ~~~  195 (234)
T TIGR02521       193 ERY  195 (234)
T ss_pred             HHH
Confidence            553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.00  E-value=0.077  Score=29.91  Aligned_cols=42  Identities=21%  Similarity=0.207  Sum_probs=25.8

Q ss_pred             chhHHHHHHHHHHhccH--------HHHHHHHHHhCCHHHHHHHHhhCCC
Q psy11102          2 TTLVSQAREYYEKCHCY--------EKLISVYTELGDFEALESCARKLPD   43 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------~k~ie~~~~~ed~d~L~~l~~~L~~   43 (87)
                      .|+|++|+++|.+.-..        -.+++||++.|+|++=.++...+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46777777777765332        2366666666666666666666644

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.97  E-value=0.2  Score=27.28  Aligned_cols=68  Identities=31%  Similarity=0.455  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ++|++|..++.++-.        .-....++...++++.-.+.....    |.....+..+|..+...|..+.|...|.+
T Consensus        14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   93 (100)
T cd00189          14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK   93 (100)
T ss_pred             hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            566777777766422        334566677777776655544432    33334566666666666666666665544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.83  E-value=0.42  Score=37.56  Aligned_cols=68  Identities=21%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +++++|.++|.++-.        ...++.++...|++++-.+..+.    -|++...+..++..+...|..+.|+..|.+
T Consensus       479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  558 (899)
T TIGR02917       479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK  558 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            556666666665422        22355566677777654444433    344556677778888788888877665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.82  E-value=0.18  Score=39.63  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHhcc-------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC-------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .++|++|.++|.++-.       ...++.++...|++++-.+..+.    -|++...+..+|..+...|..++|++.|.+
T Consensus       716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  795 (899)
T TIGR02917       716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT  795 (899)
T ss_pred             CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            4678888888877532       34577888888888777655554    355557788888888888999888888765


Q ss_pred             c
Q psy11102         71 N   71 (87)
Q Consensus        71 ~   71 (87)
                      .
T Consensus       796 ~  796 (899)
T TIGR02917       796 V  796 (899)
T ss_pred             H
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.78  E-value=0.27  Score=36.19  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHHhcc---------HHHHHHHHHHhCCHHHHHHHHhhCC---CCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC---------YEKLISVYTELGDFEALESCARKLP---DSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n---------~~k~ie~~~~~ed~d~L~~l~~~L~---~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|.++|.+.-.         +..++.+|...|+++.-.+..+.+-   .+++....+|..+...|..++|...|.
T Consensus       227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4667777777776552         2355677778888877776666532   233445677777777888888877775


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      +.
T Consensus       307 ~~  308 (389)
T PRK11788        307 EQ  308 (389)
T ss_pred             HH
Confidence            43

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.76  E-value=0.23  Score=30.08  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             chhHHHHHHHHHHhcc-----------HHHHHHHHHHhCCHHHHHHHHhhC----CCC---CchHHHHHHHHHhCCChHH
Q psy11102          2 TTLVSQAREYYEKCHC-----------YEKLISVYTELGDFEALESCARKL----PDS---SPLLKPMGEIFVKYGLCEQ   63 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------~~k~ie~~~~~ed~d~L~~l~~~L----~~~---~~lL~~ia~~F~~~G~~~~   63 (87)
                      .++|++|.++|.+.-.           .-.+..+++..++|+.-....+.+    |.+   ...+..+|..+...|..++
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~   94 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK   94 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence            4788899999877622           223788999999999777766654    332   2457888888888899888


Q ss_pred             HHHHHHh
Q psy11102         64 AVYVFDK   70 (87)
Q Consensus        64 Av~aylk   70 (87)
                      |+..|.+
T Consensus        95 A~~~~~~  101 (119)
T TIGR02795        95 AKATLQQ  101 (119)
T ss_pred             HHHHHHH
Confidence            8888754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.68  E-value=0.42  Score=41.29  Aligned_cols=67  Identities=12%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHhcc------------------HHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHH
Q psy11102          3 TLVSQAREYYEKCHC------------------YEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQA   64 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n------------------~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~A   64 (87)
                      ++|++|..++.+.-.                  .-..++.+...|++++-.++.+.-|.+.+.+..+|..+...|..++|
T Consensus       543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A  622 (1157)
T PRK11447        543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA  622 (1157)
T ss_pred             CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            566777777665321                  12346778889999999999998777777888899999999999999


Q ss_pred             HHHHH
Q psy11102         65 VYVFD   69 (87)
Q Consensus        65 v~ayl   69 (87)
                      ++.|.
T Consensus       623 ~~~y~  627 (1157)
T PRK11447        623 RAAYQ  627 (1157)
T ss_pred             HHHHH
Confidence            87764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.56  E-value=0.2  Score=32.45  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHh-CCHHHHHHHHhhCCCCCchHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTEL-GDFEALESCARKLPDSSPLLKPMGEI   54 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~-ed~d~L~~l~~~L~~~~~lL~~ia~~   54 (87)
                      +.|+.|+-+|.+.|+++.+++.+... +|++...+.+++.. +.++...++..
T Consensus        83 ~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~-~~~lw~~~~~~  134 (140)
T smart00299       83 KLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN-NPELWAEVLKA  134 (140)
T ss_pred             CcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC-CHHHHHHHHHH
Confidence            45667777777777777777776665 66666666666522 23344444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.35  E-value=0.21  Score=37.81  Aligned_cols=50  Identities=18%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCC-chH-HHHHHHH
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSS-PLL-KPMGEIF   55 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~-~lL-~~ia~~F   55 (87)
                      ++-+++|.++|++..|++..++.+|.+.|..|-+..|.++ +.. ..|-.|.
T Consensus       266 ~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~~~~~~i~~~~  317 (319)
T PF04840_consen  266 EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQLIADKIEQML  317 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999864 433 4555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=94.34  E-value=0.3  Score=31.94  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHHHhccH--------HHHHHHHHHhCCHHHHHHHHhhCC------CCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY--------EKLISVYTELGDFEALESCARKLP------DSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~--------~k~ie~~~~~ed~d~L~~l~~~L~------~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +++++|.++|.++-..        ..+..++...|+++.-.+..+..-      .....+..+|..+...|..++|.+.|
T Consensus        79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521        79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4555555555544221        123445555555555444444321      11234445555556666666555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.82  E-value=0.81  Score=35.86  Aligned_cols=79  Identities=20%  Similarity=0.121  Sum_probs=56.3

Q ss_pred             chhHHHHHHHHHH-----hccHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHH-------
Q psy11102          2 TTLVSQAREYYEK-----CHCYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAV-------   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~-----~~n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av-------   65 (87)
                      ++.|+.|.+++.+     -...-.++.++...+.-.+-.+++.+    .|.+..+|..-|+++.+.|..+.|.       
T Consensus       182 t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av  261 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAV  261 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            4567777777776     44445566666665554444444333    3556799999999999999988875       


Q ss_pred             --------------HHHHhcCCHHHHHHH
Q psy11102         66 --------------YVFDKNKHKSSQWLT   80 (87)
Q Consensus        66 --------------~aylk~gd~k~ai~~   80 (87)
                                    ++|++.||++.|+-+
T Consensus       262 ~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  262 ELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence                          579999999999854

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0553|consensus

Probab=93.79  E-value=0.27  Score=37.55  Aligned_cols=71  Identities=20%  Similarity=0.307  Sum_probs=54.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh-C--CCC-CchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK-L--PDS-SPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~-L--~~~-~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|.+|++.|.++=.        |..=+..|.++|.|+.-.+=|.+ |  +.. ++...++|.-+...|-++.|+++|-
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            4678888888887744        34556678888888766655554 3  444 6999999999999999999999987


Q ss_pred             hcC
Q psy11102         70 KNK   72 (87)
Q Consensus        70 k~g   72 (87)
                      |+=
T Consensus       174 KaL  176 (304)
T KOG0553|consen  174 KAL  176 (304)
T ss_pred             hhh
Confidence            753

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.37  E-value=0.53  Score=25.53  Aligned_cols=54  Identities=22%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +..|.+.|++++++..+         .+.++.-|........+|..+...|..+.|++.|.+.
T Consensus         7 a~~~~~~~~~~~A~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189           7 GNLYYKLGDYDEALEYY---------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHhcHHHHHHHH---------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666655543         2223333444466778888888888888888877553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=93.21  E-value=0.54  Score=34.53  Aligned_cols=48  Identities=23%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhCCC----CCchHHHHHHHHHhCCChHHHHHH
Q psy11102         20 KLISVYTELGDFEALESCARKLPD----SSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus        20 k~ie~~~~~ed~d~L~~l~~~L~~----~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      .++.+|...|+|+.-..+.+...+    +...+..++..+...|..++|++.
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDV  163 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHH
Confidence            344445555555444444333211    123344444444444554444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.95  E-value=0.14  Score=37.28  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHH
Q psy11102          5 VSQAREYYEKCHCYEKLISVYT   26 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~   26 (87)
                      +.+|+++|...|++..++.++.
T Consensus        97 ~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   97 YEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHH
Confidence            3445555555555555555444

>KOG1920|consensus

Probab=92.71  E-value=0.32  Score=42.92  Aligned_cols=84  Identities=8%  Similarity=0.098  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHhc--cHHHHHHHHHHhCCHHHHHHHHhhCCCC-CchH-------------HHHHHHHHhCCChHHHHH
Q psy11102          3 TLVSQAREYYEKCH--CYEKLISVYTELGDFEALESCARKLPDS-SPLL-------------KPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         3 ~~w~~A~~yY~~~~--n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL-------------~~ia~~F~~~G~~~~Av~   66 (87)
                      ++|++|......+|  .++..++.--+++.|+..-.+.+-=++. ...+             .+-|-+|...|..++|..
T Consensus       894 ~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~  973 (1265)
T KOG1920|consen  894 KRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALK  973 (1265)
T ss_pred             HHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHH
Confidence            56777777777777  4555555555555555443332211111 1222             244556666666666666


Q ss_pred             HHHhcCCHHHHHHHHhhcCC
Q psy11102         67 VFDKNKHKSSQWLTVVQDKP   86 (87)
Q Consensus        67 aylk~gd~k~ai~~cv~~~~   86 (87)
                      ||.-+||.+.|+.+..++++
T Consensus       974 a~~~~~dWr~~l~~a~ql~~  993 (1265)
T KOG1920|consen  974 AYKECGDWREALSLAAQLSE  993 (1265)
T ss_pred             HHHHhccHHHHHHHHHhhcC
Confidence            66666666666666666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.71  E-value=0.27  Score=35.20  Aligned_cols=69  Identities=20%  Similarity=0.374  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |++++|...|.++=.        ...++..+...|+++++.+++..+    |.+..+...+|......|..++|+..|.+
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            455556655555422        122344555667887755555443    55556677788888888888888887766


Q ss_pred             c
Q psy11102         71 N   71 (87)
Q Consensus        71 ~   71 (87)
                      .
T Consensus       240 ~  240 (280)
T PF13429_consen  240 A  240 (280)
T ss_dssp             H
T ss_pred             c
Confidence            3

>KOG2280|consensus

Probab=92.47  E-value=0.43  Score=40.49  Aligned_cols=64  Identities=13%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             HHHHHHhCCHHHHHHHHhhC--CCC-CchHH---------HHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhhcC
Q psy11102         22 ISVYTELGDFEALESCARKL--PDS-SPLLK---------PMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDK   85 (87)
Q Consensus        22 ie~~~~~ed~d~L~~l~~~L--~~~-~~lL~---------~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~~~   85 (87)
                      +..+...++|++|++++.+-  |-+ .|..+         +...++-.++...+=|.+|+++|+++.|+++..+.|
T Consensus       722 ~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  722 LTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             HHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHhc
Confidence            45677899999999999885  335 46544         456678888888899999999999999999998876

>KOG0548|consensus

Probab=92.20  E-value=0.57  Score=38.23  Aligned_cols=85  Identities=16%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC----CCchHHHHHHHHHhCCChHHHHH------------
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD----SSPLLKPMGEIFVKYGLCEQAVY------------   66 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~----~~~lL~~ia~~F~~~G~~~~Av~------------   66 (87)
                      ++++.|++||.++--..+--+++-.+.+.++-.+......-    ........|.-|-+.|-++.||.            
T Consensus       312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D  391 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED  391 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence            57788899998876666667788888877777766666543    34556677888999999998886            


Q ss_pred             ---------HHHhcCCHHHHHH---HHhhcCCC
Q psy11102         67 ---------VFDKNKHKSSQWL---TVVQDKPS   87 (87)
Q Consensus        67 ---------aylk~gd~k~ai~---~cv~~~~~   87 (87)
                               ||+|+|.+..|+.   .|++++|+
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence                     5677888887775   67777774

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.14  E-value=0.092  Score=30.52  Aligned_cols=60  Identities=20%  Similarity=0.349  Sum_probs=39.3

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCC----chHHHHHHHHHhCCChHHHHHHHHhcCCH
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSS----PLLKPMGEIFVKYGLCEQAVYVFDKNKHK   74 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~----~lL~~ia~~F~~~G~~~~Av~aylk~gd~   74 (87)
                      +..|..-|+++++++++-+      -.++.+.+++++    ..+..+|..+...|..++|++.|.++=++
T Consensus        12 a~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   12 ARVYRELGRYDEALDYYEK------ALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHTT-HHHHHHHHHH------HHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445555666666655433      333455566543    45788999999999999999999876443

...

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.85  E-value=2.2  Score=34.74  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHHhc----------cHHHHHHHHHHhCCHHHHHHHHhhCCC
Q psy11102          3 TLVSQAREYYEKCH----------CYEKLISVYTELGDFEALESCARKLPD   43 (87)
Q Consensus         3 ~~w~~A~~yY~~~~----------n~~k~ie~~~~~ed~d~L~~l~~~L~~   43 (87)
                      ++.++|.++|..-.          -+.-+|++|.+.|++++-.++++..|.
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~  490 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF  490 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence            44555555555432          134466666666666666666666553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.70  E-value=1.4  Score=35.84  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         19 EKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        19 ~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..+|++|.+.|++++-.++.+.+++. ...-..+..-|.+.|..+.|.+.|.+.
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            35678888888888888888888774 455667777777888888887777443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.70  E-value=1.3  Score=32.57  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHHH
Q psy11102          4 LVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .|+.|..++.+.|++.+++..         +..+++.-|++   ...+-.+|..+...|..+.|+..|
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~a---------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f  203 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVA---------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYF  203 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHH---------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            455666665555666666544         34444444543   144555666655666665555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=91.68  E-value=1.5  Score=29.35  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHHhc-----------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCC
Q psy11102          3 TLVSQAREYYEKCH-----------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGL   60 (87)
Q Consensus         3 ~~w~~A~~yY~~~~-----------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~   60 (87)
                      +++++|..+|.++=           -+..+..++...|+|+.-....+.    .|.....+..+|..+...|.
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            56777777777653           244556777777887776554443    23344555666766666554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=91.67  E-value=1.9  Score=28.28  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHhcc-----------HHHHHHHHHHhCCHHHHHHHHhhC----CC---CCchHHHHHHHHHhCCChHH
Q psy11102          2 TTLVSQAREYYEKCHC-----------YEKLISVYTELGDFEALESCARKL----PD---SSPLLKPMGEIFVKYGLCEQ   63 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------~~k~ie~~~~~ed~d~L~~l~~~L----~~---~~~lL~~ia~~F~~~G~~~~   63 (87)
                      .|++++|+.+|.++=.           +-.+...|-.+|++|+-..+.+..    |+   +..+-.-.+.-+.+.|..++
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e   93 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE   93 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence            5789999999997633           223777888999999877666654    54   33556667778888888888


Q ss_pred             HHHHHHh
Q psy11102         64 AVYVFDK   70 (87)
Q Consensus        64 Av~aylk   70 (87)
                      |++.++.
T Consensus        94 Al~~~l~  100 (120)
T PF12688_consen   94 ALEWLLE  100 (120)
T ss_pred             HHHHHHH
Confidence            8888875

>KOG2003|consensus

Probab=91.62  E-value=0.85  Score=37.58  Aligned_cols=28  Identities=14%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CchhHHHHHHHHHH---------------------hccHHHHHHHHHHh
Q psy11102          1 MTTLVSQAREYYEK---------------------CHCYEKLISVYTEL   28 (87)
Q Consensus         1 ~~~~w~~A~~yY~~---------------------~~n~~k~ie~~~~~   28 (87)
                      |+|++++|++.|..                     -||++.+++|++++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            57889999998864                     46777777777753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=91.61  E-value=0.73  Score=28.91  Aligned_cols=52  Identities=12%  Similarity=0.084  Sum_probs=34.0

Q ss_pred             HHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         11 YYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        11 yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .|.+.|+++++++++         ++++..-|.+......+|..+...|.+++|+..|.++
T Consensus        26 ~~~~~~~~~~A~~~~---------~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        26 NLYQQGRYDEALKLF---------QLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             HHHHcccHHHHHHHH---------HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566655553         2222223556688889999999999999998766544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.59  E-value=1.5  Score=30.64  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHHHhccH--------HHHHHHH-HHhCCH--HHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY--------EKLISVY-TELGDF--EALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~--------~k~ie~~-~~~ed~--d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      +++++|...|.++-..        -.++.++ +..|++  +.-.++.+..    |++...+..+|..+...|..++|+..
T Consensus        87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence            4555666666555432        1233443 454552  4433333332    44456777778777888888888888


Q ss_pred             HHhc
Q psy11102         68 FDKN   71 (87)
Q Consensus        68 ylk~   71 (87)
                      |.+.
T Consensus       167 ~~~a  170 (198)
T PRK10370        167 WQKV  170 (198)
T ss_pred             HHHH
Confidence            7764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=91.44  E-value=1.8  Score=35.38  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=13.9

Q ss_pred             CCCCchHHHHHHHHHhCCChHHHHH
Q psy11102         42 PDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus        42 ~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      |++...+..+|..+...|..++|+.
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~  305 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIP  305 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3334555566666666666666643

>PLN03077 Protein ECB2; Provisional

Probab=91.39  E-value=2.4  Score=35.31  Aligned_cols=53  Identities=21%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         18 YEKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        18 ~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +.-+|.+|.+.|+++.-.++.+.+++. ......+..-|.+.|..++|.+.|.+
T Consensus       326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~  379 (857)
T PLN03077        326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL  379 (857)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence            446788888889999888888888764 35566777777888888888777764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=91.31  E-value=2.4  Score=34.72  Aligned_cols=66  Identities=12%  Similarity=0.028  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ++++.|.+.|.+.-        -+..+..++...|+++.-....+.    -|++......+|..+...|..++|+.+|
T Consensus        90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~  167 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA  167 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence            45555555555541        123344555555555554333332    1333455555666666666666665544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.93  E-value=0.5  Score=24.17  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHh
Q psy11102         48 LKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        48 L~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..+|..+.+.|.+++|++.|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            56789999999999999999987

>KOG2076|consensus

Probab=90.92  E-value=0.98  Score=38.87  Aligned_cols=48  Identities=21%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             HHhhCCC-CCchHHHHHHHHHhCCChHHHHHHHHhc---------------------CCHHHHHHHHhhc
Q psy11102         37 CARKLPD-SSPLLKPMGEIFVKYGLCEQAVYVFDKN---------------------KHKSSQWLTVVQD   84 (87)
Q Consensus        37 l~~~L~~-~~~lL~~ia~~F~~~G~~~~Av~aylk~---------------------gd~k~ai~~cv~~   84 (87)
                      ++-.|.+ +.++=..+++++.+.|+.++|.-+|.|+                     |+.+.|+++..++
T Consensus       198 lAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l  267 (895)
T KOG2076|consen  198 LAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL  267 (895)
T ss_pred             HHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            3455665 4699999999999999999999988764                     8888888777654

>KOG4626|consensus

Probab=90.71  E-value=0.54  Score=39.82  Aligned_cols=54  Identities=20%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +..|.|-||+.++|.||-+.         +|--|.-..-+..+|.-++..|..+.|+++|.|+
T Consensus       395 a~i~kqqgnl~~Ai~~Ykea---------lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  395 ASIYKQQGNLDDAIMCYKEA---------LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             HHHHHhcccHHHHHHHHHHH---------HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence            45788999999999998653         2323444556777777777777777777777763

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=90.67  E-value=1.8  Score=35.93  Aligned_cols=68  Identities=15%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             chhHHHHHHHHHHh-----cc---HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKC-----HC---YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~-----~n---~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++     ++   ...++.++...++++.-....+.+    |++.. +..+|..+...|..++|+.+|.
T Consensus        62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~  140 (765)
T PRK10049         62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT  140 (765)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            46788888888872     22   345567777888888855554443    55545 7778888888888888887774


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       141 ~  141 (765)
T PRK10049        141 Q  141 (765)
T ss_pred             H
Confidence            3

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=90.55  E-value=0.73  Score=25.73  Aligned_cols=49  Identities=18%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             HhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         14 KCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        14 ~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +.|+++.|++.+         +++...-|++.+....+|..+...|..++|.+.+.+.
T Consensus         3 ~~~~~~~A~~~~---------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    3 KQGDYDEAIELL---------EKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HTTHHHHHHHHH---------HHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hccCHHHHHHHH---------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456666666554         4455556888888889999999999999999888764

...

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.34  E-value=3.9  Score=35.82  Aligned_cols=48  Identities=10%  Similarity=0.104  Sum_probs=21.5

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCCC-----CCchHHHHHHHHHhCCChHHHHHHH
Q psy11102         21 LISVYTELGDFEALESCARKLPD-----SSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~L~~-----~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +|+.|.+.|+++.-.++.+.+.+     +.....-+...+.+.|..+.|.+.|
T Consensus       655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf  707 (1060)
T PLN03218        655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY  707 (1060)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34444555555554444443321     1223444445555555555554433

>KOG3060|consensus

Probab=90.28  E-value=0.95  Score=34.28  Aligned_cols=69  Identities=23%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             chhHHHHHHHHHHh---------ccHHHHHHHHHHhCCHHHHHHHHhhCCC---CCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKC---------HCYEKLISVYTELGDFEALESCARKLPD---SSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~---------~n~~k~ie~~~~~ed~d~L~~l~~~L~~---~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      +++|++|.+||..-         =...|.+-.-.+-...+.++.|..=|..   +.+.-.+++++|.+.|++++|+-||.
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            47889999999752         1235566666666666766666666544   56889999999999999999999986


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      -
T Consensus       179 E  179 (289)
T KOG3060|consen  179 E  179 (289)
T ss_pred             H
Confidence            4

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.26  E-value=2.6  Score=36.88  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHhcc---------HHHHHHHHHHhCCHHHHHHHHhhCCC-----CCchHHHHHHHHHhCCChHHHHH--
Q psy11102          3 TLVSQAREYYEKCHC---------YEKLISVYTELGDFEALESCARKLPD-----SSPLLKPMGEIFVKYGLCEQAVY--   66 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n---------~~k~ie~~~~~ed~d~L~~l~~~L~~-----~~~lL~~ia~~F~~~G~~~~Av~--   66 (87)
                      ++++.|.++|.+...         +.-+|.+|.+.|+++...++.+...+     +......+...|.+.|..+.|++  
T Consensus       451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            566667766655432         45677888888888887777777653     22345566677777788777754  


Q ss_pred             --------------------HHHhcCCHHHHHHHHhhc
Q psy11102         67 --------------------VFDKNKHKSSQWLTVVQD   84 (87)
Q Consensus        67 --------------------aylk~gd~k~ai~~cv~~   84 (87)
                                          +|.+.|+++.|.++.-++
T Consensus       531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                445567777777666554

>KOG1586|consensus

Probab=90.19  E-value=0.53  Score=35.45  Aligned_cols=10  Identities=20%  Similarity=0.066  Sum_probs=4.1

Q ss_pred             HHHHHHHhcc
Q psy11102          8 AREYYEKCHC   17 (87)
Q Consensus         8 A~~yY~~~~n   17 (87)
                      |++++.++|+
T Consensus        60 aA~~h~k~~s   69 (288)
T KOG1586|consen   60 AADLHLKAGS   69 (288)
T ss_pred             HHHHHHhcCC
Confidence            3444444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=89.95  E-value=4  Score=35.44  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=41.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      .++|++|+++|.++-.        .-.++.+|...|++++-....+.+    |++...+-..|..+...|..++|+.
T Consensus       474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~  550 (1157)
T PRK11447        474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA  550 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            3678888888887632        235677888889998887777654    3333444444555555555555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=89.88  E-value=2.6  Score=30.90  Aligned_cols=49  Identities=18%  Similarity=0.049  Sum_probs=26.8

Q ss_pred             HHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         22 ISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        22 ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ...+...|+|+.-....+..    |+....+..+|..+...|..++|++.|.+
T Consensus       105 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189        105 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455556666544333321    33345566667666677777777665533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=89.86  E-value=1.5  Score=28.26  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhhCC----CCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         18 YEKLISVYTELGDFEALESCARKLP----DSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        18 ~~k~ie~~~~~ed~d~L~~l~~~L~----~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..++++.+...|+++...++++.+=    -+-..-..+-..+...|....|++.|-++
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            4578888889999999999998862    23355566667777777777777777665

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=89.84  E-value=4.1  Score=28.03  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=11.3

Q ss_pred             HHHHHHHhCCHHHHHHHHhh
Q psy11102         21 LISVYTELGDFEALESCARK   40 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~   40 (87)
                      +..+++..++|+.-....+.
T Consensus        76 la~~~~~~~~~~~A~~~~~~   95 (235)
T TIGR03302        76 LAYAYYKSGDYAEAIAAADR   95 (235)
T ss_pred             HHHHHHhcCCHHHHHHHHHH
Confidence            44566666666655554444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=89.66  E-value=2.1  Score=34.09  Aligned_cols=70  Identities=11%  Similarity=-0.025  Sum_probs=40.4

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCC-chHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSS-PLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~-~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .|++++|..+|.++-.        ..-....++..|++++-....+.+    |.++ ..+..+|..+...|..++|.+.|
T Consensus       385 ~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        385 AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4566777777776511        111233466677777555554432    3333 34566777777777777777777


Q ss_pred             Hhc
Q psy11102         69 DKN   71 (87)
Q Consensus        69 lk~   71 (87)
                      .+.
T Consensus       465 ~~~  467 (553)
T PRK12370        465 KEI  467 (553)
T ss_pred             HHh
Confidence            653

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.80  E-value=0.021  Score=37.10  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVK   57 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~   57 (87)
                      +-|+.|+-+|.+.|+++++++++..+++|+.-.+.+...++ ..+...++.++.+
T Consensus        84 ~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~-~~l~~~l~~~~l~  137 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDD-PELWEQLLKYCLD  137 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSS-SHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCc-HHHHHHHHHHHHh
Confidence            56777888888888888888876666777766666666544 4555555555543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=88.67  E-value=3.1  Score=31.60  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .-+...|+++.++++|         .+.++.-|.+...+...|..+...|..+.|+..|.+
T Consensus        10 ~~a~~~~~~~~Ai~~~---------~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~   61 (356)
T PLN03088         10 KEAFVDDDFALAVDLY---------TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK   61 (356)
T ss_pred             HHHHHcCCHHHHHHHH---------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3333446777777765         233333455667888899999999999888876543

>KOG1585|consensus

Probab=88.66  E-value=2.1  Score=32.54  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHhC--------------CHHHHHHHHh---hCCCCCchHHHHHHHHHhCCChHHHHHH
Q psy11102          5 VSQAREYYEKCHCYEKLISVYTELG--------------DFEALESCAR---KLPDSSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~~~e--------------d~d~L~~l~~---~L~~~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      |.+|+.-|.-+..++|+-.|+-+.-              -|++.--|.+   .||+...+..+-.++....|-.+-|.-+
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma  113 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA  113 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence            3344444444567777776654332              1233333333   3444456777777777888888887777


Q ss_pred             HHhcC------CHHHHHHHHhh
Q psy11102         68 FDKNK------HKSSQWLTVVQ   83 (87)
Q Consensus        68 ylk~g------d~k~ai~~cv~   83 (87)
                      ..|++      +|+.||+++-+
T Consensus       114 leKAak~lenv~Pd~AlqlYqr  135 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQR  135 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHH
Confidence            76654      56777776643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=88.36  E-value=3  Score=27.39  Aligned_cols=64  Identities=9%  Similarity=-0.089  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH---------------------HhcCC
Q psy11102         19 EKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF---------------------DKNKH   73 (87)
Q Consensus        19 ~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay---------------------lk~gd   73 (87)
                      ......++..|+|+.-....+.+    |.+.......|..+...|..++|+.+|                     .+.|+
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            34556667777777655444442    555688999999999999999998765                     55677


Q ss_pred             HHHHHHHHh
Q psy11102         74 KSSQWLTVV   82 (87)
Q Consensus        74 ~k~ai~~cv   82 (87)
                      ++.|+..+.
T Consensus       108 ~~eAi~~~~  116 (144)
T PRK15359        108 PGLAREAFQ  116 (144)
T ss_pred             HHHHHHHHH
Confidence            777776653

>KOG1586|consensus

Probab=88.23  E-value=2.6  Score=31.80  Aligned_cols=80  Identities=18%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCC-HHHHHHHHhhCCCCC---chHHHHHHHHHhCCChHHHH-------HHHHh
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGD-FEALESCARKLPDSS---PLLKPMGEIFVKYGLCEQAV-------YVFDK   70 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed-~d~L~~l~~~L~~~~---~lL~~ia~~F~~~G~~~~Av-------~aylk   70 (87)
                      ++++++|+++|.+++|.=|+..-....|+ |-++-++=-.....|   .--.+.+.-|+++ ..+.||       +.|..
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence            35789999999999886555544443333 222333322332211   2233444444444 444433       33445


Q ss_pred             cCCHHHHHHHHh
Q psy11102         71 NKHKSSQWLTVV   82 (87)
Q Consensus        71 ~gd~k~ai~~cv   82 (87)
                      .|++..|-.-++
T Consensus       106 ~Grf~~aAk~~~  117 (288)
T KOG1586|consen  106 MGRFTMAAKHHI  117 (288)
T ss_pred             hhHHHHHHhhhh
Confidence            566655544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=87.84  E-value=2.8  Score=36.37  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHHhcc-------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC-------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n-------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +++++|...|.++=.       +..+..++.+.|++++-+...+.    -|++...+..+|..+...|..++|++.|.+
T Consensus       590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~  668 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER  668 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            556666666655442       23445566677777765444433    244456677777777777777777665543

>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently

Probab=87.77  E-value=0.41  Score=26.91  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHhccHHHHHHHHH
Q psy11102          4 LVSQAREYYEKCHCYEKLISVYT   26 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~~k~ie~~~   26 (87)
                      +|++|..||.++.-++.+++-.-
T Consensus        19 sid~A~~yYe~Gi~Ye~~~~~~~   41 (46)
T PF09145_consen   19 SIDKANDYYERGILYEDLIEKLR   41 (46)
T ss_dssp             -SHHHHHHHHHH-SSHHHHHHHH
T ss_pred             CHHHHHHHHHcCchHHHHHHHHH
Confidence            58999999999999998877543

They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=87.47  E-value=2.9  Score=27.89  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=35.2

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC---CCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPD---SSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~---~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+|.+.|+++++++++-+.         +..-|+   ....+..+|..+...|.+++|+.+|.++
T Consensus        43 ~~~~~~g~~~~A~~~~~~a---------l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         43 MSAQADGEYAEALENYEEA---------LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHcCCHHHHHHHHHHH---------HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456666777776655432         111122   1357889999999999999999987653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.38  E-value=2.7  Score=30.29  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhccHH-------HHHHHHHHhCCHHHHHHHHhhCC-----CC-CchHHHHHHHHHhCCChHHHHHHHHhcC
Q psy11102          6 SQAREYYEKCHCYE-------KLISVYTELGDFEALESCARKLP-----DS-SPLLKPMGEIFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus         6 ~~A~~yY~~~~n~~-------k~ie~~~~~ed~d~L~~l~~~L~-----~~-~~lL~~ia~~F~~~G~~~~Av~aylk~g   72 (87)
                      .+|.+-|.+.+...       .+++-|+..|+|++-.++.+.+-     ++ ..++..+..         ...+|+.+.|
T Consensus       162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~---------~l~~Ca~~~~  232 (247)
T PF11817_consen  162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLW---------RLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH---------HHHHHHHHhC
Confidence            46666676666543       34556677788876666655541     33 455555544         4578999999


Q ss_pred             CHHHHHHHHhhc
Q psy11102         73 HKSSQWLTVVQD   84 (87)
Q Consensus        73 d~k~ai~~cv~~   84 (87)
                      |++..|.+|+++
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            999999999986

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=87.06  E-value=4.2  Score=28.32  Aligned_cols=31  Identities=16%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         41 LPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        41 L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      =|++......+|..+...|..+.|+++|-++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~A   99 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQA   99 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3566677888888888888888888888654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.03  E-value=1.2  Score=21.80  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+-.+|..+...|..++|+++|.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHH
Confidence            3567888999999999999988663

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=85.51  E-value=5.9  Score=32.93  Aligned_cols=69  Identities=13%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh---C-CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK---L-PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~---L-~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++.++|++.|.++.-        +.-++.++...++++.-.++.+.   + |.+......+|..+...|..++|+..+-
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4667778888877664        56677788888888887777777   4 4455667788888888888888876654


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       108 ~  108 (765)
T PRK10049        108 Q  108 (765)
T ss_pred             H
Confidence            4

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.50  E-value=1.6  Score=21.00  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+-.+|..+...|..++|++.|.++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3567888888888888888888653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.47  E-value=5.5  Score=32.66  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHhccHH----------HHHHHHHHhCCHHHHHH-----------HHhh------CCC---C-CchHHHH
Q psy11102          3 TLVSQAREYYEKCHCYE----------KLISVYTELGDFEALES-----------CARK------LPD---S-SPLLKPM   51 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~----------k~ie~~~~~ed~d~L~~-----------l~~~------L~~---~-~~lL~~i   51 (87)
                      .|...|++||..-....          -.-+......+|+.|--           +++.      +..   . ..++...
T Consensus       341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~  420 (613)
T PF04097_consen  341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA  420 (613)
T ss_dssp             T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence            57889999999877743          34444556677766652           2333      322   2 4778899


Q ss_pred             HHHHHhCCChHHHHHHHHhcCCHHHHHHHHhh
Q psy11102         52 GEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ   83 (87)
Q Consensus        52 a~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~   83 (87)
                      |..+...|..+.||..|.-+|++..++++.-+
T Consensus       421 A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~  452 (613)
T PF04097_consen  421 AREAEERGRFEDAILLYHLAEEYDKVLSLLNR  452 (613)
T ss_dssp             HHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999987543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=85.19  E-value=9.1  Score=27.73  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             chhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhhCCC-C--Cch-----HHHHHHHHHhCCChHHHH
Q psy11102          2 TTLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARKLPD-S--SPL-----LKPMGEIFVKYGLCEQAV   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~L~~-~--~~l-----L~~ia~~F~~~G~~~~Av   65 (87)
                      .|++++|.++|.++-        -...+..+++..|++++-+...+..-+ .  ++.     .-..|......|..++|.
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            466788888887753        345678899999999998887765322 1  121     225788889999999999


Q ss_pred             HHHHhcC
Q psy11102         66 YVFDKNK   72 (87)
Q Consensus        66 ~aylk~g   72 (87)
                      ..|-+..
T Consensus       207 ~~~~~~~  213 (355)
T cd05804         207 AIYDTHI  213 (355)
T ss_pred             HHHHHHh
Confidence            9998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=85.18  E-value=6  Score=23.58  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             HHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         8 A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+..+.+.|+++++++.+-..         ++.-|++   ....-.+|..+...|.+++|++.|.++
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAF---------LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH---------HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            334444456666666554322         2223432   235666888888888888888877653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=84.84  E-value=7.1  Score=29.79  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHhccH----------------HHHHHHHHHhCCHHHHHHHHhhCCC----CCchHHHHHHHHHhCCCh
Q psy11102          2 TTLVSQAREYYEKCHCY----------------EKLISVYTELGDFEALESCARKLPD----SSPLLKPMGEIFVKYGLC   61 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------------~k~ie~~~~~ed~d~L~~l~~~L~~----~~~lL~~ia~~F~~~G~~   61 (87)
                      .++|+.|.+.+.+-...                ..++.-.-...+-+.|.++.+++|+    +.++....|..+...|..
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~  279 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH  279 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence            46777777666555421                1112222345667888888888876    346788889999999999


Q ss_pred             HHHHHHHH
Q psy11102         62 EQAVYVFD   69 (87)
Q Consensus        62 ~~Av~ayl   69 (87)
                      ++|.....
T Consensus       280 ~~A~~~L~  287 (398)
T PRK10747        280 DTAQQIIL  287 (398)
T ss_pred             HHHHHHHH
Confidence            99877653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=84.69  E-value=2.6  Score=29.22  Aligned_cols=55  Identities=9%  Similarity=0.062  Sum_probs=35.9

Q ss_pred             HHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHH
Q psy11102         12 YEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTV   81 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~c   81 (87)
                      +.+-|++++||+||.+....+         |++..-.--.|.-+...|..+.|.++|      +.||..|
T Consensus        79 ~Q~~g~~~~AI~aY~~A~~L~---------~ddp~~~~~ag~c~L~lG~~~~A~~aF------~~Ai~~~  133 (157)
T PRK15363         79 CQAQKHWGEAIYAYGRAAQIK---------IDAPQAPWAAAECYLACDNVCYAIKAL------KAVVRIC  133 (157)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC---------CCCchHHHHHHHHHHHcCCHHHHHHHH------HHHHHHh
Confidence            355677888888887665422         333344566777777778888887776      3456666

>PRK12370 invasion protein regulator; Provisional

Probab=84.52  E-value=4.8  Score=32.11  Aligned_cols=22  Identities=18%  Similarity=0.087  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHhCCChHHHHHHH
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ....+|..+...|..++|++.|
T Consensus       374 a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        374 IKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHH
Confidence            3444444444444444444333

>KOG1155|consensus

Probab=84.30  E-value=3.5  Score=33.76  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             chhHHHHHHHHHHh---------------------ccHHHHHHHHHHhCC--------------HHHHHHH---------
Q psy11102          2 TTLVSQAREYYEKC---------------------HCYEKLISVYTELGD--------------FEALESC---------   37 (87)
Q Consensus         2 ~~~w~~A~~yY~~~---------------------~n~~k~ie~~~~~ed--------------~d~L~~l---------   37 (87)
                      .++.++|+.||.++                     +|.++||++|-+.=|              -=.++.+         
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            35667888887765                     678889998865422              1111111         


Q ss_pred             -HhhC-CCCCchHHHHHHHHHhCCChHHHHHHHHh---cCCH
Q psy11102         38 -ARKL-PDSSPLLKPMGEIFVKYGLCEQAVYVFDK---NKHK   74 (87)
Q Consensus        38 -~~~L-~~~~~lL~~ia~~F~~~G~~~~Av~aylk---~gd~   74 (87)
                       +-.+ |-++.++.-+|+-..+.++.++|+.||-+   +||.
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence             1122 55689999999999999999999999854   5666

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C

Probab=83.77  E-value=4.3  Score=30.02  Aligned_cols=63  Identities=13%  Similarity=-0.015  Sum_probs=42.0

Q ss_pred             HHHhccHHHHHHHHHHh-------------CCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHhcCCH
Q psy11102         12 YEKCHCYEKLISVYTEL-------------GDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKNKHK   74 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~-------------ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~gd~   74 (87)
                      -.-+||.+.+++-+...             +|-+-|--|+...+.+ .+.|..+|+.+.+.|....|--||+=+|.+
T Consensus        69 ~v~~g~~~~~v~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~~  145 (284)
T PF12931_consen   69 QVFSGNSPEAVDELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGNP  145 (284)
T ss_dssp             HHTTT-HHHHHHHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT--
T ss_pred             HHHcCCcHHHHHHhccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCCc
Confidence            34467777777776654             5667777777776664 688999999999999999999999988754

>KOG0547|consensus

Probab=83.57  E-value=2.6  Score=34.67  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             chhHHHHHHHHHHhccHHH---------------HHHHHHHhCCHHHHHHHHhhCC---CCC-chHHHHHHHHHhCCChH
Q psy11102          2 TTLVSQAREYYEKCHCYEK---------------LISVYTELGDFEALESCARKLP---DSS-PLLKPMGEIFVKYGLCE   62 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k---------------~ie~~~~~ed~d~L~~l~~~L~---~~~-~lL~~ia~~F~~~G~~~   62 (87)
                      .|++++|+++|-++-.++.               ++-.+.--+|++.-++|++.--   ..+ -.-..+|.+-.+.|..+
T Consensus       475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID  554 (606)
T ss_pred             HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence            5899999999999877654               3444445588888888888743   333 45788999999999999


Q ss_pred             HHHHHHHhcCCH
Q psy11102         63 QAVYVFDKNKHK   74 (87)
Q Consensus        63 ~Av~aylk~gd~   74 (87)
                      +||+.|.|.-+.
T Consensus       555 eAielFEksa~l  566 (606)
T KOG0547|consen  555 EAIELFEKSAQL  566 (606)
T ss_pred             HHHHHHHHHHHH
Confidence            999999986443

>KOG1125|consensus

Probab=83.15  E-value=1.6  Score=35.94  Aligned_cols=52  Identities=12%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             HHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         11 YYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        11 yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +|.-.|+|+|+|+|+--+         .+.=|.+--+=.++|--+++....++||+||-|+
T Consensus       439 Ly~ls~efdraiDcf~~A---------L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAA---------LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHhcchHHHHHHHHHHHH---------HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            566677888888876432         1111444477899999999999999999999775

>KOG0543|consensus

Probab=82.60  E-value=7.2  Score=30.93  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHHhccH-----------------------HHHHHHHHHhCCHHHHHHHHhh-C---CCCCchHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY-----------------------EKLISVYTELGDFEALESCARK-L---PDSSPLLKPMGEIF   55 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~-----------------------~k~ie~~~~~ed~d~L~~l~~~-L---~~~~~lL~~ia~~F   55 (87)
                      ++|..|+.-|.++-.+                       --++-|+.+++.|..-.+.|.. |   |.|.+-|=+.|.-.
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~  301 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL  301 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            5677777777773221                       2367789999999987777665 3   33569999999999


Q ss_pred             HhCCChHHHHHHHHhcC
Q psy11102         56 VKYGLCEQAVYVFDKNK   72 (87)
Q Consensus        56 ~~~G~~~~Av~aylk~g   72 (87)
                      ...|-++.|...|.|+-
T Consensus       302 l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  302 LALGEYDLARDDFQKAL  318 (397)
T ss_pred             HhhccHHHHHHHHHHHH
Confidence            99999999999998864

>TIGR00540 hemY_coli hemY protein

Probab=82.39  E-value=7.9  Score=29.55  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             chhHHHHHHHHHHh----cc----HHH-HHHHHHHhCCHH----HHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKC----HC----YEK-LISVYTELGDFE----ALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~----~n----~~k-~ie~~~~~ed~d----~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .|+++.|.+||.++    ++    .+. .++.+...++++    .++++.+.-|++...+.-.+......|..+.|.+.+
T Consensus       131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l  210 (409)
T TIGR00540       131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII  210 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            36788888888773    22    122 377777788887    445555555666677888888888888888766655


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      -+
T Consensus       211 ~~  212 (409)
T TIGR00540       211 DN  212 (409)
T ss_pred             HH
Confidence            44

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12854 PPR_1: PPR repeat

Probab=82.28  E-value=2.1  Score=21.69  Aligned_cols=23  Identities=4%  Similarity=-0.067  Sum_probs=15.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhc
Q psy11102         62 EQAVYVFDKNKHKSSQWLTVVQD   84 (87)
Q Consensus        62 ~~Av~aylk~gd~k~ai~~cv~~   84 (87)
                      .-=|.+|.|.|+++.|+++--++
T Consensus        11 ~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen   11 NTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC
Confidence            34467778888888887766544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=81.72  E-value=3.1  Score=20.10  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+..+|..+...|..++|.+.|.++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a   27 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4667888899999999999988765

...

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=80.82  E-value=3.8  Score=21.95  Aligned_cols=27  Identities=22%  Similarity=0.269  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHhc-cHHHHHHHHHHhCC
Q psy11102          4 LVSQAREYYEKCH-CYEKLISVYTELGD   30 (87)
Q Consensus         4 ~w~~A~~yY~~~~-n~~k~ie~~~~~ed   30 (87)
                      +.+.|..|...++ |++.||+.||..++
T Consensus        14 ~~~~A~~~L~~~~wdle~Av~~y~~~~~   41 (43)
T PF14555_consen   14 DEDVAIQYLEANNWDLEAAVNAYFDDGE   41 (43)
T ss_dssp             SHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4578999999988 99999999998653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=80.62  E-value=7.5  Score=29.66  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHHHhccH----H-----HHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY----E-----KLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----~-----k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .|+++.|.+||.++...    .     .+.+.+...|+++.-....+.+    |++...+.-.+..+...|..++|++.+
T Consensus       131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l  210 (398)
T PRK10747        131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL  210 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            35677777777765432    1     2356777777777666655554    444466777777777777777777433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=80.35  E-value=10  Score=32.36  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHhcc------HHHH--HHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC------YEKL--ISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n------~~k~--ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +++++|..++.++-+      ...+  +..|...++|++-.++.+.+    |++..++..++..+...|..++|++.+.+
T Consensus        82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574         82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            566677777777643      1223  34666667777766666554    44556666667777777777777776665


Q ss_pred             c
Q psy11102         71 N   71 (87)
Q Consensus        71 ~   71 (87)
                      .
T Consensus       162 l  162 (822)
T PRK14574        162 L  162 (822)
T ss_pred             h
Confidence            4

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=80.21  E-value=4.7  Score=27.98  Aligned_cols=48  Identities=17%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             HHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHhcC
Q psy11102         25 YTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus        25 ~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk~g   72 (87)
                      +|..|++++-+++-+-|    |.+..-.--+|-..+..|.+++|+++|-+++
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            46778888887777776    4456778889999999999999998886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.22
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.35
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.2
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.06
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.02
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.0
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.98
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.93
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.88
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.87
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.59
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.51
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.36
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.22
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.14
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.1
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.03
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.92
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	95.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.7
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.7
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.66
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	95.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	95.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.61
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	95.16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	94.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.99
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	94.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	94.9
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.87
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	94.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.73
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	94.71
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	94.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	94.49
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	94.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	94.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.32
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	94.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	94.19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	94.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.01
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	93.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	93.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	93.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.83
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	93.68
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.61
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	93.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	93.5
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.48
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	93.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	93.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	93.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	93.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	93.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	93.11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	92.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.96
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	92.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	92.94
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	92.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	92.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	92.69
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	92.68
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	92.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	92.48
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	92.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	92.04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	91.97
1pgy_A	47	SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associat	91.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	91.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	91.7
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	91.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.44
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	91.37
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	91.31
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	91.25
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	90.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	90.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	90.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	89.97
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	89.93
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	89.26
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	89.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	89.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	88.88
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	88.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	88.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	88.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	88.02
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	87.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	87.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	87.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	87.06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	86.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	86.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	86.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	85.91
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	85.22
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	85.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	84.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	84.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	83.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	83.03
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	82.64
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	81.82
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	80.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	80.6
2vvy_A	169	Protein B15, B14; IKK, IKK beta, BCL-2 family, ear	80.16

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.22  E-value=8.3e-11  Score=90.42  Aligned_cols=82  Identities=10%  Similarity=0.010  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVV   82 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv   82 (87)
                      ..|+++++++.+.||++.|++||.+.+||++|..|...+ .+.+.+.+++..+...|+++.|+.+|+++||+++|+++|+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~-~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSF-NNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHc-CCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence            579999999999999999999999999999999998883 3557789999999999999999999999999999999999


Q ss_pred             hcC
Q psy11102         83 QDK   85 (87)
Q Consensus        83 ~~~   85 (87)
                      +++
T Consensus       761 ~~~  763 (814)
T 3mkq_A          761 KSQ  763 (814)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.48  E-value=1.5e-07  Score=72.88  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCH---HHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHK---SSQW   78 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~---k~ai   78 (87)
                      .|.|++|..+|.++.|+.++++|++++|+|++                              ||++|.|++++   +.++
T Consensus       135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~------------------------------AVea~~KA~~~~~Wk~v~  184 (449)
T 1b89_A          135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA------------------------------AVDGARKANSTRTWKEVC  184 (449)
T ss_dssp             --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHH------------------------------HHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhhHHHHHHHHHHhccHHH------------------------------HHHHHHHcCCchhHHHHH
Confidence            47899999999999999999999999999998                              77777777777   7777


Q ss_pred             HHHhhcC
Q psy11102         79 LTVVQDK   85 (87)
Q Consensus        79 ~~cv~~~   85 (87)
                      .+||+++
T Consensus       185 ~aCv~~~  191 (449)
T 1b89_A          185 FACVDGK  191 (449)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            7777664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.47  E-value=6.8e-07  Score=68.67  Aligned_cols=85  Identities=14%  Similarity=0.033  Sum_probs=73.5

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTV   81 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~c   81 (87)
                      .++++.|.+.|.++||+.++..+|...++.+.|.++++...... ........|...|..++|++.|.++|+...|+.++
T Consensus       694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~-~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA  772 (814)
T 3mkq_A          694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG-KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLG  772 (814)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC-chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHH
Confidence            47899999999999999999999999999999999987765532 22334445788999999999999999999999999


Q ss_pred             hhcCCC
Q psy11102         82 VQDKPS   87 (87)
Q Consensus        82 v~~~~~   87 (87)
                      .+++|+
T Consensus       773 ~~~~~~  778 (814)
T 3mkq_A          773 STYGLG  778 (814)
T ss_dssp             HHTTCC
T ss_pred             HHhCCC
Confidence            998874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.71  E-value=0.00018  Score=62.80  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHH-HhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYT-ELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQ   77 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~-~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~a   77 (87)
                      .+.+++|.++|.+++++.++++.++ ..++|++-.+++..+. .++....+|..+...|.+++|+++|+|++|+..-
T Consensus      1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn-~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say 1137 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSY 1137 (1630)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHH
Confidence            4679999999999999999999999 8999999888888763 3677889999999999999999999999988773

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.00064  Score=46.84  Aligned_cols=79  Identities=10%  Similarity=-0.115  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVV   82 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv   82 (87)
                      ..|.+=.+.-.+.||++-+.+||.+.+||++|.=|-....+ .+-|.+++..=...|...-|-.+|+-.||++.++++.+
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~-~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD-VNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC-HHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHH
Confidence            35777777778888888888888888888888655444332 23344444444444444444444444444444444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.0011  Score=45.61  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             chhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC-CCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD-SSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLT   80 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~-~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~   80 (87)
                      .++.+-|.+-|.++||+.++.=.|.-.||-++|.++.+.-.. ++--+...  -+.-.|..+++++.|++.|+...|+-+
T Consensus        47 ~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~--~~l~lGdv~~~i~lL~~~~r~~eA~~~  124 (177)
T 3mkq_B           47 QGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLL--NTFYNNSTKERSSIFAEGGSLPLAYAV  124 (177)
T ss_dssp             TTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHH--HHHHcCCHHHHHHHHHHCCChHHHHHH
Confidence            467889999999999999999999999999999999877544 33223222  245579999999999999999999988


Q ss_pred             HhhcCCC
Q psy11102         81 VVQDKPS   87 (87)
Q Consensus        81 cv~~~~~   87 (87)
                      .....||
T Consensus       125 A~t~g~~  131 (177)
T 3mkq_B          125 AKANGDE  131 (177)
T ss_dssp             HHHTTCH
T ss_pred             HHHcCcH
Confidence            8777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.44  E-value=0.00047  Score=60.21  Aligned_cols=80  Identities=11%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHhccHH-------HHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHH
Q psy11102          3 TLVSQAREYYEKCHCYE-------KLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKS   75 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~-------k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k   75 (87)
                      ++|++|++||..++...       .++.||.+++.++.++..+...  +.+-+..+|+.|.+.|+++.|...|.++++.-
T Consensus      1148 GkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~--n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~ 1225 (1630)
T 1xi4_A         1148 GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP--NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 1225 (1630)
T ss_pred             CCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHH
Confidence            44555555555544333       1456666667777666665322  34566689999999999999988887776666


Q ss_pred             HHHHHHhhc
Q psy11102         76 SQWLTVVQD   84 (87)
Q Consensus        76 ~ai~~cv~~   84 (87)
                      ++..+.+++
T Consensus      1226 rLA~tLvkL 1234 (1630)
T 1xi4_A         1226 RLASTLVHL 1234 (1630)
T ss_pred             HHHHHHHHh
Confidence            666555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0012  Score=39.53  Aligned_cols=70  Identities=13%  Similarity=0.051  Sum_probs=54.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+++|.++=.        +..+..||+..|+|++-....+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD   96 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4788899999887632        45678888999999876655444    35556778899999999999999999887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        97 ~a   98 (126)
T 3upv_A           97 AA   98 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.35  E-value=0.0011  Score=41.62  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHHHhccH--------------------------HHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY--------------------------EKLISVYTELGDFEALESCARKL----PDSSPLLKPM   51 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------------------------~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~i   51 (87)
                      .++|++|+.+|.++=..                          -.+..||..+|+|+.-...++..    |.+...+-.+
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            47899999999987654                          34678999999998766555442    5556889999


Q ss_pred             HHHHHhCCChHHHHHHHHhc
Q psy11102         52 GEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        52 a~~F~~~G~~~~Av~aylk~   71 (87)
                      |..+...|..++|+..|.++
T Consensus       104 g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A          104 AKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcHHHHHHHHHHH
Confidence            99999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.26  E-value=0.00011  Score=57.01  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=27.7

Q ss_pred             chhHHHHHHHHHHhccH-------HHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCH
Q psy11102          2 TTLVSQAREYYEKCHCY-------EKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHK   74 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-------~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~   74 (87)
                      .++|++|+.||..+...       ..++.||.++|+++.++++.+. | +..-...+|+.|...|+.+.|+..|.++...
T Consensus        74 ~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~  151 (449)
T 1b89_A           74 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF  151 (449)
T ss_dssp             -----------------------------------CHHHHTTTTTC-C-----------------CTTTHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhH
Confidence            47899999999988753       2345599999999999988875 2 3357899999999999999999888766665


Q ss_pred             HHHHHHHhhc
Q psy11102         75 SSQWLTVVQD   84 (87)
Q Consensus        75 k~ai~~cv~~   84 (87)
                      ....++.+++
T Consensus       152 ~~LA~~L~~L  161 (449)
T 1b89_A          152 GRLASTLVHL  161 (449)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.22  E-value=0.0021  Score=39.78  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=49.5

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh---C-CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK---L-PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~---L-~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+++|.++=.        +.....||+.+|+|++=....+.   + |++...+..+|..+...|..++|++.|.
T Consensus        26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4678888888877532        23567788888888765554443   2 4445778888888888888888888886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       106 ~a  107 (126)
T 4gco_A          106 DA  107 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.20  E-value=0.0028  Score=36.18  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +-.+..++...++|+.-....+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4788899999888633        24567888999999876555443    35556778899999999999999999887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        97 ~~   98 (118)
T 1elw_A           97 EG   98 (118)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.18  E-value=0.0038  Score=36.96  Aligned_cols=70  Identities=14%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             chhHHHHHHHHHHhc-----------cHHHHHHHHHHhCCHHHHHHH----HhhCCCC---CchHHHHHHHHHhCCChHH
Q psy11102          2 TTLVSQAREYYEKCH-----------CYEKLISVYTELGDFEALESC----ARKLPDS---SPLLKPMGEIFVKYGLCEQ   63 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~-----------n~~k~ie~~~~~ed~d~L~~l----~~~L~~~---~~lL~~ia~~F~~~G~~~~   63 (87)
                      .++|++|.++|.+.-           -+-.+..+++..|+|++-...    ++.-|++   ...+-.+|..+...|..++
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~   94 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE   94 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence            478899999988742           223577889999999885444    4444665   4557889999999999999


Q ss_pred             HHHHHHhc
Q psy11102         64 AVYVFDKN   71 (87)
Q Consensus        64 Av~aylk~   71 (87)
                      |+..|.+.
T Consensus        95 A~~~~~~~  102 (129)
T 2xev_A           95 AQQTLQQV  102 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.08  E-value=0.0032  Score=39.52  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+++|.++=.        +-.+..||+..|+|++-....+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  103 (164)
T 3sz7_A           24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE  103 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4688889888887643        34677888899998876655544    25556788899999999999999999887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       104 ~a  105 (164)
T 3sz7_A          104 KG  105 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.07  E-value=0.0038  Score=40.40  Aligned_cols=69  Identities=10%  Similarity=0.065  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++=.        +-.+..||...|+|++-.+..+.    -|++....-.+|.-+...|..++|+++|.
T Consensus        49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888877543        34566788888888776555444    35666778888999999999999998886


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       129 ~  129 (151)
T 3gyz_A          129 L  129 (151)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.06  E-value=0.0059  Score=36.46  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++=.        +-.+..|+...++|+.-....+.    -|++...+..+|..+...|..++|+..|.
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ  101 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4688888888887532        45678888899999865544443    35556788899999999999999999887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       102 ~a  103 (137)
T 3q49_B          102 RA  103 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.02  E-value=0.00078  Score=40.46  Aligned_cols=70  Identities=27%  Similarity=0.331  Sum_probs=52.2

Q ss_pred             chhHHHHHHHHHHhccH-----------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY-----------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      .+++++|+.+|.++=..           -.+..+|+..|+|++-.+..+.    -|++...+..+|..+...|..++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46778888888877544           3566788889999876655544    46677889999999999999999999


Q ss_pred             HHHhc
Q psy11102         67 VFDKN   71 (87)
Q Consensus        67 aylk~   71 (87)
                      .|.++
T Consensus        83 ~~~~a   87 (117)
T 3k9i_A           83 LLLKI   87 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.00  E-value=0.0019  Score=42.59  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             chhHHHHHHHHHHhccHH--------H----------------HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYE--------K----------------LISVYTELGDFEALESCARK----LPDSSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~--------k----------------~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~   53 (87)
                      .++|++|+.+|.++-...        .                +..+|...|+|++-....+.    -|++...+..+|.
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE   96 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            478999999998874321        2                78889999999876655544    3666788999999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..+.|++.|.++
T Consensus        97 ~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           97 MQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.00  E-value=0.0061  Score=35.11  Aligned_cols=66  Identities=24%  Similarity=0.374  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHHhc-----c---HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKCH-----C---YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~~-----n---~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +++++|..+|.++-     +   +-.++.++...++++.-....+.    -|.....+..+|..+...|..+.|++.|
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            45666666665431     1   23445566666666554443333    2333344556666666666666665544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.98  E-value=0.0057  Score=35.35  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +..+..++...++|+.-.+..+.    -|.+...+..+|..+...|..+.|+..|.
T Consensus        25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK  104 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4688899999887643        34567888899998876555444    35555778899999999999999999886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       105 ~~  106 (131)
T 2vyi_A          105 KA  106 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.98  E-value=0.0088  Score=34.24  Aligned_cols=70  Identities=23%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +..++.++...++++.-....+.    -|.+...+..+|..+...|..+.|+..|.
T Consensus        22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  101 (125)
T 1na0_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ  101 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3678888888877632        24567788888888875554443    34455667788888888888888888876


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       102 ~~  103 (125)
T 1na0_A          102 KA  103 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.95  E-value=0.0045  Score=39.02  Aligned_cols=69  Identities=9%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             chhHHHHHHHHHHhccHH--------HHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYE--------KLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~--------k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|++.|.++-...        .+..+|+..|+|++-.+..+.    =|++......+|..+...|..++|+..|.
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            367788888887764432        467788888888875554443    25556778888888888888888888775


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus        90 ~   90 (150)
T 4ga2_A           90 R   90 (150)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.95  E-value=0.0042  Score=37.16  Aligned_cols=70  Identities=19%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             chhHHHHHHHHHHhc-----------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHH
Q psy11102          2 TTLVSQAREYYEKCH-----------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~-----------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      .++|++|.++|.++-           -+..+..+|+..++|+.-....+.    -|++...+..+|..+...|..++|++
T Consensus        41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A           41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL  120 (148)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            478999999998752           234567889999999876555443    35556778899999999999999999


Q ss_pred             HHHhc
Q psy11102         67 VFDKN   71 (87)
Q Consensus        67 aylk~   71 (87)
                      .|.++
T Consensus       121 ~~~~a  125 (148)
T 2dba_A          121 DLQRC  125 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.93  E-value=0.0071  Score=37.31  Aligned_cols=70  Identities=13%  Similarity=0.043  Sum_probs=51.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..+|...|+|+.-....+.    -|++...+..+|..+...|..++|++.|.
T Consensus        31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888876521        34567788888888875554443    35566778888999999999999998887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       111 ~a  112 (142)
T 2xcb_A          111 SA  112 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.89  E-value=0.0042  Score=38.20  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCC-------chHHHHHHHHHhCCChH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSS-------PLLKPMGEIFVKYGLCE   62 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~-------~lL~~ia~~F~~~G~~~   62 (87)
                      .++|++|+++|.++=.        +..+..||+.+|+|++-.+..+..    |+..       ..+..+|..+...|.++
T Consensus        21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~  100 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS  100 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence            4788999999988633        345678889999988765544331    2221       25667888888888888


Q ss_pred             HHHHHHHhc
Q psy11102         63 QAVYVFDKN   71 (87)
Q Consensus        63 ~Av~aylk~   71 (87)
                      +|++.|.++
T Consensus       101 ~A~~~~~ka  109 (127)
T 4gcn_A          101 LAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.88  E-value=0.0043  Score=40.11  Aligned_cols=70  Identities=19%  Similarity=0.178  Sum_probs=54.4

Q ss_pred             chhHHHHHHHHHHhcc------------------------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC------------------------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------------------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~   53 (87)
                      .++|++|.++|.++-.                        +..+..||...++|+.-....+.    -|.+...+-.+|.
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4788999999988642                        34577888999999876555444    3555678889999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..+.|++.|.++
T Consensus       131 ~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A          131 ANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHH
Confidence            999999999999988765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.87  E-value=0.0099  Score=36.16  Aligned_cols=70  Identities=10%  Similarity=0.001  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..++...++|+.-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  105 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  105 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4678888888887533        34567788888888875554433    35555778888999999999999988886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       106 ~a  107 (166)
T 1a17_A          106 TV  107 (166)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.76  E-value=0.0055  Score=35.85  Aligned_cols=70  Identities=17%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..++...++|++-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  108 (133)
T 2lni_A           29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ  108 (133)
T ss_dssp             TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4678888888887532        34567778888888875554443    35555778888999999999999988887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       109 ~~  110 (133)
T 2lni_A          109 KA  110 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.75  E-value=0.01  Score=39.12  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHh--------ccHHHHHHHHHHhCCHHHHHHHHhh---CCCCCch----HHHHHHHHHhCCChHHHHHH
Q psy11102          3 TLVSQAREYYEKC--------HCYEKLISVYTELGDFEALESCARK---LPDSSPL----LKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         3 ~~w~~A~~yY~~~--------~n~~k~ie~~~~~ed~d~L~~l~~~---L~~~~~l----L~~ia~~F~~~G~~~~Av~a   67 (87)
                      ++|++|.++|.++        .-+..+..+|+..|+|+.-.+..+.   .|++...    +..+|..+...|..++|++.
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~   96 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ   96 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            4556666666553        1344555566666666554443333   2222222    45566666666666666554


Q ss_pred             H
Q psy11102         68 F   68 (87)
Q Consensus        68 y   68 (87)
                      |
T Consensus        97 ~   97 (272)
T 3u4t_A           97 Y   97 (272)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.73  E-value=0.012  Score=37.15  Aligned_cols=70  Identities=9%  Similarity=0.028  Sum_probs=53.6

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..++...|+|++-....+.    -|++...+-.+|..+...|..++|++.|.
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  113 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF  113 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888887522        23567788899999876555444    36667888899999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       114 ~a  115 (148)
T 2vgx_A          114 LA  115 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.72  E-value=0.0098  Score=33.59  Aligned_cols=70  Identities=11%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCC--CCchHHHHHHHHHhC-CChHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPD--SSPLLKPMGEIFVKY-GLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~--~~~lL~~ia~~F~~~-G~~~~Av~   66 (87)
                      .++|++|..+|.++-.        +-.+..+++..++|++-.+..+.    -|.  ....+..+|..+... |..++|++
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4678888888887632        23567788888998876554443    355  457788888888888 88888888


Q ss_pred             HHHhc
Q psy11102         67 VFDKN   71 (87)
Q Consensus        67 aylk~   71 (87)
                      .|.+.
T Consensus        99 ~~~~~  103 (112)
T 2kck_A           99 AEARA  103 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.68  E-value=0.011  Score=37.23  Aligned_cols=68  Identities=22%  Similarity=0.276  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHh----hCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCAR----KLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~----~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ++|+.|.++|.++-.        ...+..+|...|+|++-.+..+    .-|.+...+..+|..+...|..++|++.|.+
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455566666555432        2345566666777665443333    2344556677777777777777777777765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.63  E-value=0.012  Score=37.70  Aligned_cols=69  Identities=10%  Similarity=0.049  Sum_probs=52.9

Q ss_pred             chhHHHHHHHHHHhcc-----HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC-----YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .++|++|.++|.++-+     +-.+..+|+..|+|++-.+..+.    -|.....+..+|..+...|..++|++.|.+
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   96 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE   96 (213)
T ss_dssp             TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4688889998887643     45567788899999876655544    255567788999999999999999877754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.59  E-value=0.015  Score=38.19  Aligned_cols=70  Identities=17%  Similarity=0.045  Sum_probs=50.6

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +..++.+|...|+|++-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  135 (275)
T 1xnf_A           56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  135 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3677888888877532        34567788888888765554444    35556778888888888888888888886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       136 ~a  137 (275)
T 1xnf_A          136 AF  137 (275)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0096  Score=42.54  Aligned_cols=70  Identities=21%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             chhHHHHHHHHHHhcc-------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC-------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .++|++|+.+|.++-.       +..++.|+...|+|+.-....+.    -|.+...+..+|..+...|..++|+..|.+
T Consensus        19 ~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (514)
T 2gw1_A           19 NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV   98 (514)
T ss_dssp             TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4789999999998743       66788999999999887666654    355567889999999999999999999976


Q ss_pred             c
Q psy11102         71 N   71 (87)
Q Consensus        71 ~   71 (87)
                      +
T Consensus        99 ~   99 (514)
T 2gw1_A           99 L   99 (514)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.53  E-value=0.024  Score=34.51  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHHhccH--------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY--------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~--------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      +++++|.++|.++-..        ..++.++...++++.-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  134 (186)
T 3as5_A           56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK  134 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4566666666554321        2345556666666654443333    23344556666666666666666655543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.51  E-value=0.018  Score=37.79  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=54.4

Q ss_pred             chhHHHHHHHHHHhccH------------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY------------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAV   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~------------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av   65 (87)
                      .++|++|.++|.++-..            ..+..+++..|+|+.-.+..+.    -|.+...+..+|..+...|..++|+
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            47899999999987653            3567888899999876655554    3556688899999999999999998


Q ss_pred             HHHHh
Q psy11102         66 YVFDK   70 (87)
Q Consensus        66 ~aylk   70 (87)
                      ..|.+
T Consensus        98 ~~~~~  102 (275)
T 1xnf_A           98 EAFDS  102 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.016  Score=37.48  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ++|++|.++|.++-.        +..+..++...|+|+.-.+..+.    -|++...+..+|..+...|..++|++.|.+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            566677776666532        34556667777777665544443    244446666777777777777777776665


Q ss_pred             c
Q psy11102         71 N   71 (87)
Q Consensus        71 ~   71 (87)
                      +
T Consensus       233 a  233 (258)
T 3uq3_A          233 A  233 (258)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.48  E-value=0.015  Score=38.94  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             chhHHHHHHHHHHhccH-----------------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCC
Q psy11102          2 TTLVSQAREYYEKCHCY-----------------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGL   60 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~   60 (87)
                      .++|++|..+|.++-..                 ..+..++...|+++.-.+..+.    -|++...+..+|..+...|.
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            46788888888877554                 3678888899998876665554    35566888999999999999


Q ss_pred             hHHHHHHHHhcC
Q psy11102         61 CEQAVYVFDKNK   72 (87)
Q Consensus        61 ~~~Av~aylk~g   72 (87)
                      .++|++.|.++=
T Consensus       286 ~~~A~~~~~~al  297 (330)
T 3hym_B          286 FENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999998763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.48  E-value=0.01  Score=34.31  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCC-------CchHHHHHHHHHhCCChH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDS-------SPLLKPMGEIFVKYGLCE   62 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~-------~~lL~~ia~~F~~~G~~~   62 (87)
                      .++|++|..+|.++-.        +-.+..++...++|+.-....+..    |..       ...+..+|..+...|..+
T Consensus        17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   96 (131)
T 1elr_A           17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK   96 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            4678888888887633        345677888888888755544432    322       445777888888888888


Q ss_pred             HHHHHHHhc
Q psy11102         63 QAVYVFDKN   71 (87)
Q Consensus        63 ~Av~aylk~   71 (87)
                      .|++.|.++
T Consensus        97 ~A~~~~~~~  105 (131)
T 1elr_A           97 DAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.47  E-value=0.0075  Score=37.98  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++=.        +..+..+|...|+++.-....+.    -|++...+..+|..+...|..++|++.|+
T Consensus        44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~  123 (150)
T 4ga2_A           44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV  123 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4788899999888632        34577888999999876655544    35566889999999999999998888874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.44  E-value=0.017  Score=37.62  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCC-------chHHHHHHHHHhCCChHH
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSS-------PLLKPMGEIFVKYGLCEQ   63 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~-------~lL~~ia~~F~~~G~~~~   63 (87)
                      ++|++|.++|.++-.        +..+..+|...|+|++-.+..+.    -|++.       .....+|..+...|..++
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  135 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK  135 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence            566677777666522        34556667777777665544443    24433       235566666666677777


Q ss_pred             HHHHHHhc
Q psy11102         64 AVYVFDKN   71 (87)
Q Consensus        64 Av~aylk~   71 (87)
                      |++.|.++
T Consensus       136 A~~~~~~a  143 (228)
T 4i17_A          136 AEENYKHA  143 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.42  E-value=0.0078  Score=39.29  Aligned_cols=69  Identities=4%  Similarity=-0.055  Sum_probs=52.2

Q ss_pred             chhHHHHHHHHHHhccHH---------HHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCYE---------KLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~~---------k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .++|++|.++|.++=...         .+..|++..|+|++-.+..+..    |.....+..+|..+...|..++|++.|
T Consensus        20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   99 (228)
T 4i17_A           20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL   99 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence            478888999888764433         3678888999998766655542    344577889999999999999998877


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      .+
T Consensus       100 ~~  101 (228)
T 4i17_A          100 TE  101 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.41  E-value=0.013  Score=42.73  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             chhHHHHHHHHHHhcc------------------------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC------------------------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------------------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~   53 (87)
                      .++|++|.++|.++=.                        +..+..||+++++|++-.+..+..    |++...+-.+|.
T Consensus       236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            4789999999988765                        235678899999998766655542    445688999999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..++|++.|.++
T Consensus       316 ~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          316 GWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            999999999999998764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.02  Score=36.98  Aligned_cols=51  Identities=12%  Similarity=0.029  Sum_probs=34.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         20 KLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        20 k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+..++...|+|+.-.+..+.    -|.+...+..+|..+...|..++|++.|.+
T Consensus       144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            456677777887765555444    244556677888888888888887766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.36  E-value=0.015  Score=41.49  Aligned_cols=70  Identities=23%  Similarity=0.105  Sum_probs=52.7

Q ss_pred             chhHHHHHHHHHHhc-----------------------cHHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH-----------------------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEI   54 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~-----------------------n~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~   54 (87)
                      .++|++|+.+|.++=                       -+-.+..||...++|+.-....+..    |.+...+..+|..
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            367888888887652                       2345677888889988766655542    5566888899999


Q ss_pred             HHhCCChHHHHHHHHhc
Q psy11102         55 FVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~   71 (87)
                      +...|..++|+..|.++
T Consensus       240 ~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          240 HLAVNDFELARADFQKV  256 (336)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            99999999999888764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.35  E-value=0.037  Score=35.27  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHH----hhCCCCC----------------chHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCA----RKLPDSS----------------PLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~----~~L~~~~----------------~lL~~ia~   53 (87)
                      .++|++|.++|.++-.        +-.+..+|+..|+|++-.+..    +..|++.                ..+..+|.
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (213)
T 1hh8_A           50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  129 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence            4788999999988642        345678899999998755444    3345544                67889999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..+.|++.|.++
T Consensus       130 ~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A          130 MYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.35  E-value=0.019  Score=38.69  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             chhHHHHHHHHHHhcc------------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHH
Q psy11102          2 TTLVSQAREYYEKCHC------------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAV   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av   65 (87)
                      .++|++|.++|.++-.            +..+..++...|+++.-.+..+..    |++...+..+|..+...|..++|+
T Consensus       247 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  326 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI  326 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            3677888888876533            234667888899988776666553    445578889999999999999999


Q ss_pred             HHHHhc
Q psy11102         66 YVFDKN   71 (87)
Q Consensus        66 ~aylk~   71 (87)
                      +.|.++
T Consensus       327 ~~~~~a  332 (359)
T 3ieg_A          327 QDYEAA  332 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.33  E-value=0.035  Score=33.75  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=53.6

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +-.++.+++..|+++.-.+..+.    -|.+...+..+|..+...|..+.|++.|.
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3678899998887632        34567889999999876555444    35556778899999999999999999887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       169 ~~  170 (186)
T 3as5_A          169 KA  170 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.33  E-value=0.025  Score=35.69  Aligned_cols=49  Identities=20%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      ++.++...|++++-.+..+.    -|.+...+..+|..+...|..++|.+.|.
T Consensus       119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  171 (225)
T 2vq2_A          119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK  171 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44455555555443332222    23333444555555555555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.33  E-value=0.028  Score=32.18  Aligned_cols=70  Identities=24%  Similarity=0.357  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +-.++.++...|+++.-.+..+.    -|.....+..+|..+...|..++|+..|.
T Consensus        48 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  127 (136)
T 2fo7_A           48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ  127 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence            3578888888877632        34567788889998875544443    35555667778888888888888887775


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       128 ~~  129 (136)
T 2fo7_A          128 KA  129 (136)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.32  E-value=0.024  Score=35.56  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=47.2

Q ss_pred             chhHHHHHHHHHHhccH--------HHHHHH-HHHhCCH--HHHHHH----HhhCCCCCchHHHHHHHHHhCCChHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY--------EKLISV-YTELGDF--EALESC----ARKLPDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------~k~ie~-~~~~ed~--d~L~~l----~~~L~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      .++|++|..+|.++-..        ..+..+ ++..+++  +.-...    +..-|.+...+..+|..+...|..++|+.
T Consensus        57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence            36788888888776432        245566 6677886  543333    33335556777888888888888888888


Q ss_pred             HHHhc
Q psy11102         67 VFDKN   71 (87)
Q Consensus        67 aylk~   71 (87)
                      .|.++
T Consensus       137 ~~~~a  141 (177)
T 2e2e_A          137 LWQKV  141 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.31  E-value=0.01  Score=39.23  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=16.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..+|...|++++-....+.    -|++...+..+|..+...|..++|++.|.+
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            34444555555443222222    233334445555555555555555555444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.30  E-value=0.039  Score=35.92  Aligned_cols=48  Identities=13%  Similarity=0.029  Sum_probs=22.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ++.+++..|+++.-.+..+.    -|.+...+..+|..+...|..++|++.|
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34455555555443333322    2333344555555555555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.22  E-value=0.03  Score=35.13  Aligned_cols=67  Identities=16%  Similarity=0.087  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .|+|++|.++|.++=.        +..+..+|...|+++.-.......    |+.......+|..+...|..+.|++.|
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   96 (184)
T 3vtx_A           18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL   96 (184)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4788888888888632        346677888888888766555543    344566777788888888877777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.22  E-value=0.037  Score=36.99  Aligned_cols=69  Identities=17%  Similarity=0.107  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCC-ChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYG-LCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G-~~~~Av~ay   68 (87)
                      .++|++|.++|.+.-.        ....+.+++..|++++...+.+.+    |.+...+..+|..+...| ..++|++.|
T Consensus        35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  114 (330)
T 3hym_B           35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL  114 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3677788887777521        234667788888888776665543    445577788888888888 788787766


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      .+
T Consensus       115 ~~  116 (330)
T 3hym_B          115 SK  116 (330)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.19  E-value=0.012  Score=40.73  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+.+|.++=.        +..+..+|...|+|++-.+..+..    |++...+..+|..+...|..++|+..|.
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   96 (281)
T 2c2l_A           17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4788999999987632        345788999999999877766652    3445788999999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        97 ~a   98 (281)
T 2c2l_A           97 RA   98 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.14  E-value=0.044  Score=40.22  Aligned_cols=48  Identities=23%  Similarity=0.143  Sum_probs=22.5

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC---CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102         21 LISVYTELGDFEALESCARKL---PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~L---~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ++.+|+..|+++.-..+.+..   |.+......+|..+...|..++|++.|
T Consensus       123 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  173 (597)
T 2xpi_A          123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL  173 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence            444455555555544444443   222334444555555555555554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.13  E-value=0.05  Score=35.71  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             chhHHHHHHHHHHhcc-----------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC-----------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVY   66 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~   66 (87)
                      .++|++|.++|.++-.           +..+..++...|+|+.-.+..+..    |.....+..+|..+...|..+.|++
T Consensus        50 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  129 (272)
T 3u4t_A           50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ  129 (272)
T ss_dssp             TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            4678899999987754           567888899999999888877765    3345788899999999999999999


Q ss_pred             HHHhcC
Q psy11102         67 VFDKNK   72 (87)
Q Consensus        67 aylk~g   72 (87)
                      .|.++=
T Consensus       130 ~~~~al  135 (272)
T 3u4t_A          130 YMEKQI  135 (272)
T ss_dssp             HHGGGC
T ss_pred             HHHHHh
Confidence            988764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.10  E-value=0.043  Score=36.60  Aligned_cols=69  Identities=9%  Similarity=-0.040  Sum_probs=51.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..++.++...|+|+.-.+..+.    -|++...+..+|..+...|..+.|++.|.
T Consensus        34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  113 (327)
T 3cv0_A           34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  113 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888887632        34567888899999875555444    35556778899999999999999988765


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       114 ~  114 (327)
T 3cv0_A          114 A  114 (327)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.04  E-value=0.021  Score=36.70  Aligned_cols=48  Identities=15%  Similarity=0.165  Sum_probs=21.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ++.++...|++++-....+.    -|++...+..+|..+...|..+.|+..|
T Consensus       131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34444555555443333222    2333344445555555555555544443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.04  E-value=0.032  Score=41.01  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             chhHHHHHHHHHHhc-------cHHHHHHHHHHhCCHHHHHHHHhh-CCCC-------------------CchHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH-------CYEKLISVYTELGDFEALESCARK-LPDS-------------------SPLLKPMGEI   54 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~-------n~~k~ie~~~~~ed~d~L~~l~~~-L~~~-------------------~~lL~~ia~~   54 (87)
                      .+++++|..+|.+.-       -...++.+|++.|++++-.++.+. .|..                   ......+|..
T Consensus       130 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (597)
T 2xpi_A          130 TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV  209 (597)
T ss_dssp             TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence            467888888888872       245678999999999999999984 4554                   3567889999


Q ss_pred             HHhCCChHHHHHHHHhc
Q psy11102         55 FVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~   71 (87)
                      +...|..++|++.|.++
T Consensus       210 ~~~~g~~~~A~~~~~~~  226 (597)
T 2xpi_A          210 YTNLSNFDRAKECYKEA  226 (597)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            99999999999999775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.03  E-value=0.037  Score=36.95  Aligned_cols=69  Identities=13%  Similarity=0.246  Sum_probs=43.7

Q ss_pred             chhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-        -+..++.++...|++++-.+..+.    -|++...+..+|..+...|..++|++.|.
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            356777777777642        234566677777777765555443    24444667777777777777777776554


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       231 ~  231 (327)
T 3cv0_A          231 R  231 (327)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.92  E-value=0.031  Score=41.55  Aligned_cols=70  Identities=23%  Similarity=0.178  Sum_probs=55.4

Q ss_pred             chhHHHHHHHHHHhcc-----------------------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC-----------------------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEI   54 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------------------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~   54 (87)
                      .++|++|+.+|.++=.                       +-.+..||+++++|+.-....+.    -|.+...+-.+|..
T Consensus       281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            4678899999887633                       23678899999999886665554    25566889999999


Q ss_pred             HHhCCChHHHHHHHHhc
Q psy11102         55 FVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~   71 (87)
                      +...|..++|+..|.++
T Consensus       361 ~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          361 QLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHH
Confidence            99999999999998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.91  E-value=0.02  Score=40.96  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             chhHHHHHHHHHHhcc-------------------------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC-------------------------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMG   52 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-------------------------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia   52 (87)
                      .++|++|..+|.++=.                         +-.+..||..+++|+.-....+..    |.+...+-.+|
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG  271 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4678888888888532                         345778899999998766665543    55668899999


Q ss_pred             HHHHhCCChHHHHHHHHhcCC
Q psy11102         53 EIFVKYGLCEQAVYVFDKNKH   73 (87)
Q Consensus        53 ~~F~~~G~~~~Av~aylk~gd   73 (87)
                      ..+...|..+.|+..|.++=.
T Consensus       272 ~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          272 KAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999998743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.90  E-value=0.037  Score=38.26  Aligned_cols=69  Identities=10%  Similarity=0.047  Sum_probs=50.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|.++|.++-.        +..+..+|...|+|+.-.+..+..    |.+...+..+|..+...|..++|++.|.
T Consensus        78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  157 (365)
T 4eqf_A           78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK  157 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence            3677888888877632        345677888888888766555542    4456778889999999999999988775


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       158 ~  158 (365)
T 4eqf_A          158 N  158 (365)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.84  E-value=0.052  Score=39.11  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-.        +..+..+++..|+++.-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3567777777776532        23566777788887765555544    24455677778888888888888887776


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       403 ~  403 (537)
T 3fp2_A          403 I  403 (537)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.78  E-value=0.031  Score=42.01  Aligned_cols=70  Identities=10%  Similarity=0.014  Sum_probs=56.4

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++=.        +..+..+|...|+|++-.+..+..    |++...+..+|..+...|..++|++.|.
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~   98 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE   98 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5789999999998633        356788999999999876665542    4455788899999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        99 ~a  100 (477)
T 1wao_1           99 TV  100 (477)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.78  E-value=0.054  Score=37.39  Aligned_cols=69  Identities=16%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             chhHHHHHHHHHHhcc----------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC----------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n----------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      .+++++|.++|.++-.          +..+..+|...|++++-.+..+.    -|++...+..+|..+...|..++|++.
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  269 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA  269 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4677777777776532          34566777778887776555444    244556777888888888888888776


Q ss_pred             HHh
Q psy11102         68 FDK   70 (87)
Q Consensus        68 ylk   70 (87)
                      |.+
T Consensus       270 ~~~  272 (365)
T 4eqf_A          270 YTR  272 (365)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=95.77  E-value=0.074  Score=34.54  Aligned_cols=70  Identities=11%  Similarity=-0.031  Sum_probs=52.9

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|.++|.++-.        +..++.+++..|+++.-....+.    -|.....+..++..+...|..++|.+.|.
T Consensus       154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  233 (252)
T 2ho1_A          154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL  233 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4678899999987532        55788889999999886655554    34445667888888889999999988876


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       234 ~~  235 (252)
T 2ho1_A          234 QL  235 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.071  Score=31.52  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          5 VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |..-...|.+.|++++++++|-+         .++.-|++...+..+|..+...|..++|++.|.+
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~---------al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTE---------MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK   63 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH---------HHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44445556666777777766533         3334466778899999999999999999987654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.71  E-value=0.064  Score=34.37  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             chhHHHHHHHHHHhccH--------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY--------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|..+|.++-..        ..++.++...|+++.-.+..+.    -|.+...+..+|..+...|..++|++.|.
T Consensus        70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  149 (243)
T 2q7f_A           70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ  149 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            35667777777665322        3456677777777765555443    24445667777777777887777777665


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       150 ~  150 (243)
T 2q7f_A          150 R  150 (243)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.70  E-value=0.07  Score=36.72  Aligned_cols=62  Identities=11%  Similarity=0.101  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHhccHHHHHHHHHHhCCHHHH-------HHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          4 LVSQAREYYEKCHCYEKLISVYTELGDFEAL-------ESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L-------~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +|++|+++|.++++      +|...|+|++-       .++.+.+.+.   ...+..+|..+...|..++|++.|.++
T Consensus        32 ~~~~A~~~~~~a~~------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           32 KFEEAADLCVQAAT------IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHHHHHHHHH------HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            48888888777643      34444544432       2333333331   356788899999999998888776543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.70  E-value=0.099  Score=30.40  Aligned_cols=54  Identities=11%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +..|.+.|+++++++++         ++.++.-|+.......+|..+...|..++|++.|.++
T Consensus        14 g~~~~~~g~~~~A~~~~---------~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A           14 AQEHLKHDNASRALALF---------EELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHTTCHHHHHHHH---------HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH---------HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444455555555543         2333334666788899999999999999999999764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.70  E-value=0.05  Score=38.36  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +-.++.+|+..|+++.-....+.    -|+....+..+|..+...|..++|++.|.
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  118 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK  118 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888887532        34677888999999886665554    35556778889999999999999987665


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       119 ~~  120 (450)
T 2y4t_A          119 KV  120 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.69  E-value=0.056  Score=36.98  Aligned_cols=68  Identities=16%  Similarity=0.298  Sum_probs=44.1

Q ss_pred             hhHHHHHHHHHHhc----------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKCH----------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~~----------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +++++|.++|.++-          -+..+..+|...|+|++-....+.    -|++...+..+|..+...|..++|++.|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            56777777776642          234556777777777765554443    2444566777787787888877777665


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      .+
T Consensus       275 ~~  276 (368)
T 1fch_A          275 RR  276 (368)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.68  E-value=0.053  Score=37.59  Aligned_cols=24  Identities=13%  Similarity=0.171  Sum_probs=15.0

Q ss_pred             chHHHHHHHHHhCCChHHHHHHHH
Q psy11102         46 PLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus        46 ~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      ..+..+|..+...|..++|++.|.
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~  100 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIE  100 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            456666777777776666655554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.67  E-value=0.057  Score=36.92  Aligned_cols=69  Identities=19%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|..+|.++-.        +..+..++...|+++.-.+..+.    -|++...+..+|..+...|..++|++.|.
T Consensus        77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (368)
T 1fch_A           77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  156 (368)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3567777777776532        34566777778887765554443    24455677788888888888888877776


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       157 ~  157 (368)
T 1fch_A          157 D  157 (368)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.078  Score=30.08  Aligned_cols=54  Identities=15%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ...|.+.|++++++++|-         +.++.-|.+...+..+|..+...|..++|++.|.++
T Consensus        11 g~~~~~~~~~~~A~~~~~---------~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A           11 GNSLFKQGLYREAVHCYD---------QLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHTTTCHHHHHHHHH---------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH---------HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            334444455555555432         223334556677888888888888888888888764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.66  E-value=0.06  Score=37.95  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             chhHHHHHHHHHHhc------------cHHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHH
Q psy11102          2 TTLVSQAREYYEKCH------------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAV   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~------------n~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av   65 (87)
                      .++|++|.++|.++-            -+..++.++...|++++-.+..+..    |++...+..+|..+...|..++|+
T Consensus       270 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~  349 (450)
T 2y4t_A          270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI  349 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence            367888888888762            2345678888999998877766653    445678889999999999999999


Q ss_pred             HHHHhc
Q psy11102         66 YVFDKN   71 (87)
Q Consensus        66 ~aylk~   71 (87)
                      +.|.++
T Consensus       350 ~~~~~a  355 (450)
T 2y4t_A          350 QDYETA  355 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998775

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=95.65  E-value=0.058  Score=36.26  Aligned_cols=48  Identities=19%  Similarity=0.103  Sum_probs=27.8

Q ss_pred             HHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102         22 ISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus        22 ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      +.++...|++++-.++.+.+    |.+...+..+|..+...|..++|++.|.
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  178 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK  178 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35566666666555444442    3344556666666666676666665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.64  E-value=0.018  Score=35.04  Aligned_cols=50  Identities=8%  Similarity=-0.102  Sum_probs=24.5

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..++...|+++.-....+.    -|++...+..+|..+...|..++|+..|.+
T Consensus        57 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           57 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  110 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555433322222    233444555555555555555555555543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=95.64  E-value=0.073  Score=33.47  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhC-CChHHHHHHHHh
Q psy11102         21 LISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKY-GLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~-G~~~~Av~aylk   70 (87)
                      ++.++...|+++.-.+..+.    -|.+...+..+|..+... |..++|++.|.+
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  102 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK  102 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34455555555544333332    233334455555555555 555555554433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.61  E-value=0.08  Score=32.35  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             HHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         12 YEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |.+.|++++|+++|-+         .+..-|.+...+..+|..+...|..++|++.|.+
T Consensus        23 ~~~~g~~~~A~~~~~~---------al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~   72 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNE---------AVKRDPENAILYSNRAACLTKLMEFQRALDDCDT   72 (126)
T ss_dssp             HHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence            4445666666666533         2333466678899999999999999999987654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.44  E-value=0.052  Score=37.90  Aligned_cols=66  Identities=24%  Similarity=0.397  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHHh--------ccHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          3 TLVSQAREYYEKC--------HCYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         3 ~~w~~A~~yY~~~--------~n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      ++|++|.++|.++        .-+..++.++...|++++-.+..+.    -|++...+..+|..+...|..++|++.|
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4556666665542        1233455555666665554443333    2334455556666666666666665544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.44  E-value=0.14  Score=28.01  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=25.9

Q ss_pred             CCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         41 LPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        41 L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      -|.+...+..+|..+...|..++|+..|.++
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3556677889999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.35  E-value=0.025  Score=37.35  Aligned_cols=69  Identities=19%  Similarity=0.145  Sum_probs=49.3

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhC-----------
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKY-----------   58 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~-----------   58 (87)
                      .+++++|+.+|.++=.        +-.+..++...|++++-....+.    -|++......+|..+...           
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~   97 (217)
T 2pl2_A           18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK   97 (217)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            4677888888877532        34567788888888876555444    355667788888888888           


Q ss_pred             CChHHHHHHHHh
Q psy11102         59 GLCEQAVYVFDK   70 (87)
Q Consensus        59 G~~~~Av~aylk   70 (87)
                      |..++|++.|.+
T Consensus        98 g~~~~A~~~~~~  109 (217)
T 2pl2_A           98 GYLEQALSVLKD  109 (217)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            888888876544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.35  E-value=0.15  Score=34.94  Aligned_cols=70  Identities=11%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhh----CCCCC-c------hHHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARK----LPDSS-P------LLKPMGEIFVK   57 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~-~------lL~~ia~~F~~   57 (87)
                      +++++|+++|.++-.              +..+..++...|+|++-....+.    -|++. .      .+..+|..+..
T Consensus       132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence            678888888877643              33557788888999876555444    34432 1      46778888999


Q ss_pred             CCChHHHHHHHHhcC
Q psy11102         58 YGLCEQAVYVFDKNK   72 (87)
Q Consensus        58 ~G~~~~Av~aylk~g   72 (87)
                      .|..++|+.+|.++-
T Consensus       212 ~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          212 ATDAVAAARTLQEGQ  226 (292)
T ss_dssp             TTCHHHHHHHHHGGG
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999999999988763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.34  E-value=0.049  Score=38.05  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      +++++|.++|.++-.        +..++.++...|++++-.+..+.    -|+.......+|..+...|..++|++.|.
T Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            456666666655421        23455556666665544333322    24445556667777777777777666553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=95.16  E-value=0.053  Score=43.46  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|++++|+++|.++=.        +-.+..+|...|++++-.+..+.    =|+....+..+|..+...|..++|+++|.
T Consensus        22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3677788888877532        23566777778887765544433    24445677788888888888888877664


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      |
T Consensus       102 k  102 (723)
T 4gyw_A          102 R  102 (723)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.07  E-value=0.095  Score=39.23  Aligned_cols=68  Identities=10%  Similarity=0.069  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ++|++|.++|.++-.        +..+..+|...|++++-.+..+.    -|++...+..+|..+...|..++|++.|.+
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666655422        23445556666666554443333    233345566666666666666666655544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.07  E-value=0.045  Score=41.00  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             CchhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          1 MTTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         1 ~~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      +++++++|.++|.++-.        +..+..++...|+|++-.+..+..    |++...+..+|..+...|..++|++.|
T Consensus         1 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            56889999999988642        445678889999998877666553    444578899999999999999998766


Q ss_pred             Hh
Q psy11102         69 DK   70 (87)
Q Consensus        69 lk   70 (87)
                      .+
T Consensus        81 ~~   82 (568)
T 2vsy_A           81 QQ   82 (568)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.03  E-value=0.094  Score=29.28  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=39.4

Q ss_pred             HHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          7 QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         7 ~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .-+..|.+.|+++++++++-         +.+..-|.+...+..+|..+...|..++|++.|.++
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~---------~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   66 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFE---------KAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYV   66 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHH---------HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHH---------HHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34455666667777766653         233334666677889999999999999999888653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=94.99  E-value=0.05  Score=36.00  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             chhHHHHHHHHHHhcc----------------HHHHHHHHHHhCCHHHHHHHHhhC---------CC---CCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC----------------YEKLISVYTELGDFEALESCARKL---------PD---SSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n----------------~~k~ie~~~~~ed~d~L~~l~~~L---------~~---~~~lL~~ia~   53 (87)
                      .++|++|..+|.++-.                +..+..+|...|+|+.-.+..+..         ++   ....+..+|.
T Consensus        40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4678888888877654                345677888888888665544432         22   2356788899


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..++|++.|.++
T Consensus       120 ~~~~~g~~~~A~~~~~~a  137 (311)
T 3nf1_A          120 LYGKRGKYKEAEPLCKRA  137 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHH
Confidence            999999999998888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.99  E-value=0.12  Score=29.17  Aligned_cols=53  Identities=15%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCc-hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSP-LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~-lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..|.+.|+++++++++-+         .+..-|++.. .+..+|..+...|..++|++.|.++
T Consensus         8 ~~~~~~~~~~~A~~~~~~---------al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            8 KELINQGDIENALQALEE---------FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHH---------HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH---------HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334455566666665432         2333455556 8888999999999999999988764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=94.93  E-value=0.18  Score=30.63  Aligned_cols=50  Identities=14%  Similarity=0.137  Sum_probs=36.1

Q ss_pred             HHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         12 YEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |.+.|++++|+++|-+.         +.--|++...+..+|..+...|.+++|++.|.+
T Consensus        18 ~~~~~~~~~A~~~y~~A---------l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKA---------IELDPSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHTTCHHHHHHHHHHH---------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH---------HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            45566777777766432         222366678899999999999999999886654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=94.90  E-value=0.17  Score=31.40  Aligned_cols=54  Identities=19%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             HHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         8 A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      -...|.+.|++++++++|-+         .++.-|.+...+..+|..+...|.+++|+..|.+
T Consensus        17 ~g~~~~~~g~~~~A~~~~~~---------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A           17 EGNAAMARKEYSKAIDLYTQ---------ALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH---------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH---------HHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            33444455566666555533         2333366678899999999999999999987754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.88  E-value=0.16  Score=28.98  Aligned_cols=58  Identities=9%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          5 VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      |-.-+..|...|+++++++++-+         .+..-|.+...+..+|..+...|..++|+..|.++
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~---------a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDK---------AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH---------HHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33444555666666666665533         23334556677888999999999999998877654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.87  E-value=0.06  Score=34.92  Aligned_cols=71  Identities=13%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             chhHHHHHHHHHHhccH----------------HHHHHHHHHhCCHHHHHHHHhhC--------CC-C---CchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY----------------EKLISVYTELGDFEALESCARKL--------PD-S---SPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------------~k~ie~~~~~ed~d~L~~l~~~L--------~~-~---~~lL~~ia~   53 (87)
                      .++|++|.++|.++-..                ..+..+|+..|+|++-.+..+..        +. .   ...+..+|.
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  177 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS  177 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            57888888888887654                24567788888887655544332        11 1   356778899


Q ss_pred             HHHhCCChHHHHHHHHhcC
Q psy11102         54 IFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~g   72 (87)
                      .+...|..++|++.|.++-
T Consensus       178 ~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          178 CYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999998887653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=94.84  E-value=0.19  Score=30.63  Aligned_cols=48  Identities=15%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             HHHHHhCCHHHHHHHH----hhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         23 SVYTELGDFEALESCA----RKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~----~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+++..|+|++-.+..    ..-|.+...+..+|..+...|..++|+.+|.+
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444555555444333    33466678889999999999999999876643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.73  E-value=0.058  Score=34.98  Aligned_cols=70  Identities=13%  Similarity=0.245  Sum_probs=48.7

Q ss_pred             chhHHHHHHHHHHhccH----------------HHHHHHHHHhCCHHHHHHHHhhC---------CC---CCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY----------------EKLISVYTELGDFEALESCARKL---------PD---SSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------------~k~ie~~~~~ed~d~L~~l~~~L---------~~---~~~lL~~ia~   53 (87)
                      .++|++|.++|.++-..                ..+..+|...|+|++-.+..+..         ++   ....+..+|.
T Consensus        56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46778888888775433                34567777888887766554442         21   1356778899


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..++|++.|.++
T Consensus       136 ~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B          136 LCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999998887664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=94.71  E-value=0.12  Score=34.27  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=12.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHh
Q psy11102         49 KPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        49 ~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      -.+|..+...|..++|+..|.+
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHH
Confidence            3456666666666666665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=94.71  E-value=0.18  Score=33.17  Aligned_cols=55  Identities=16%  Similarity=0.086  Sum_probs=36.6

Q ss_pred             chhHHHHHHHHHHhcc-----------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCc---hHHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC-----------YEKLISVYTELGDFEALESCARK----LPDSSP---LLKPMGEIFV   56 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~---lL~~ia~~F~   56 (87)
                      .++|++|+.+|.+.-.           +-.+..+|+..|+|++-....+.    -|++..   .+-.+|..+.
T Consensus        17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            4789999999987532           34567899999999975554444    455432   3555665554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.64  E-value=0.062  Score=39.97  Aligned_cols=82  Identities=6%  Similarity=-0.091  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHhccH-----------HHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY-----------EKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~-----------~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      ++|++|.++|.++-..           -.+..+|...|+|++-.+..+.    -|++...+..++..+...|..++|++.
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999887543           3478889999999876655544    355567789999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhhcC
Q psy11102         68 FDKNKHKSSQWLTVVQDK   85 (87)
Q Consensus        68 ylk~gd~k~ai~~cv~~~   85 (87)
                      |-+. ..+..-.+.-.++
T Consensus       315 ~~~~-~~~~l~~~~~~l~  331 (474)
T 4abn_A          315 KGKT-KPKKLQSMLGSLR  331 (474)
T ss_dssp             TTTC-CHHHHHHHHHTCC
T ss_pred             hccc-cCccHHHHHHhch
Confidence            9887 4555555544433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.61  E-value=0.22  Score=27.87  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      -.-+..|...|+++++++++-+         .+..-|.+...+..+|..+...|..+.|+..|.+
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSE---------AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHH---------HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3344455556666666655432         2333455667788899999999999998876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.56  E-value=0.3  Score=27.44  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=34.6

Q ss_pred             HHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         8 A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      -+..|.+.|+++++++.+-+         ..+.-|.+...+..+|..+...|..++|+..|.+
T Consensus        15 ~~~~~~~~~~~~~A~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   68 (125)
T 1na0_A           15 LGNAYYKQGDYDEAIEYYQK---------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK   68 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH---------HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            33445555555555544432         2333455567788899999999999999876644

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.50  E-value=0.32  Score=28.23  Aligned_cols=54  Identities=17%  Similarity=0.057  Sum_probs=36.5

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCC---chHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSS---PLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~---~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +..|.+.|+++++++.+         .++++.-|++.   ..+-.+|..+...|..++|++.|.+.
T Consensus         9 a~~~~~~~~~~~A~~~~---------~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~   65 (129)
T 2xev_A            9 AFDALKNGKYDDASQLF---------LSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL   65 (129)
T ss_dssp             HHHHHHTTCHHHHHHHH---------HHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH---------HHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34445566666666554         33444456544   57888999999999999998877653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.49  E-value=0.17  Score=38.17  Aligned_cols=73  Identities=15%  Similarity=0.077  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHhcc----------------HHHHHHHHHHhCCHHHHHHHHhh--------CCCCCch----HHHHHHH
Q psy11102          3 TLVSQAREYYEKCHC----------------YEKLISVYTELGDFEALESCARK--------LPDSSPL----LKPMGEI   54 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n----------------~~k~ie~~~~~ed~d~L~~l~~~--------L~~~~~l----L~~ia~~   54 (87)
                      ++|++|.++|.++=.                +..+...|...|+|++-+.+.+.        ++++||.    +..+|..
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            578999999988643                45678888899999987766544        5666643    6789999


Q ss_pred             HHhCCChHHHHHHHHhcCCHH
Q psy11102         55 FVKYGLCEQAVYVFDKNKHKS   75 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~gd~k   75 (87)
                      +...|..++|...|.|+=++.
T Consensus       392 ~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHHH
Confidence            999999999999998864443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=94.49  E-value=0.067  Score=35.40  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=25.7

Q ss_pred             chhHHHHHHHHHHhccH----------------HHHHHHHHHhCCHHHHHHHHhh
Q psy11102          2 TTLVSQAREYYEKCHCY----------------EKLISVYTELGDFEALESCARK   40 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------------~k~ie~~~~~ed~d~L~~l~~~   40 (87)
                      .++|++|.++|.++-..                ..++.+|...|++++-.+..+.
T Consensus       166 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46778888887776443                3456777788888766555433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=94.39  E-value=0.26  Score=30.70  Aligned_cols=48  Identities=13%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             HHHHHhCCHHHHHHHHh----hCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         23 SVYTELGDFEALESCAR----KLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~~----~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+++..|+|++-....+    .-|.+...+..+|..+...|..++|+++|.+
T Consensus        29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   80 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY   80 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34444555544433333    3356667888999999999999999987755

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=94.37  E-value=0.092  Score=34.61  Aligned_cols=70  Identities=14%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHHHhcc------------HHHHHHHHHHhCCHHHHHHHHhh-------CCCC---CchHHHHHHHHHhCC
Q psy11102          2 TTLVSQAREYYEKCHC------------YEKLISVYTELGDFEALESCARK-------LPDS---SPLLKPMGEIFVKYG   59 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~~---~~lL~~ia~~F~~~G   59 (87)
                      .++|++|..+|.++-.            +..+..+++..|+|+.-.+..+.       +++.   ...+..+|..+...|
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            4678888888887522            23667788888888876665433       2321   356778888889999


Q ss_pred             ChHHHHHHHHhc
Q psy11102         60 LCEQAVYVFDKN   71 (87)
Q Consensus        60 ~~~~Av~aylk~   71 (87)
                      ..+.|++.|.++
T Consensus        98 ~~~~A~~~~~~a  109 (338)
T 3ro2_A           98 NFDEAIVCCQRH  109 (338)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999888877653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.32  E-value=0.15  Score=34.05  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHhcc--------------------HHHHHHHHHHhCCHHHHHHHHhh---C-------CCC-CchH---
Q psy11102          3 TLVSQAREYYEKCHC--------------------YEKLISVYTELGDFEALESCARK---L-------PDS-SPLL---   48 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------------~~k~ie~~~~~ed~d~L~~l~~~---L-------~~~-~~lL---   48 (87)
                      ++|++|+..|.++=.                    +.....|+..+|+|++-....+.   +       ..+ ...+   
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~  104 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  104 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence            567777777776532                    22345567777777765544333   2       333 4677   


Q ss_pred             -HHHHHHHHhCCChHHHHHHHHhc
Q psy11102         49 -KPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        49 -~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                       -..|.-+...|.+++|+++|-|+
T Consensus       105 ~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A          105 VYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHCCCHHHHHHHHHHH
Confidence             88999999999999999999775

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=94.23  E-value=0.35  Score=28.35  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          5 VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |-.-+..|.+.|+++++++++-+         .+..-|.+...+..+|..+...|..+.|+..|.+
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~---------al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   68 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGR---------AITRNPLVAVYYTNRALCYLKMQQPEQALADCRR   68 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHH---------HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            33444455555566666555432         2233355668899999999999999999987754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.21  E-value=0.27  Score=28.53  Aligned_cols=52  Identities=23%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         20 KLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        20 k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+..+|+..|+|+.-....+.    -|+.......+|..+...|..++|+..|.++
T Consensus        24 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           24 TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345566666666654444333    3556678889999999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=94.19  E-value=0.17  Score=40.49  Aligned_cols=70  Identities=14%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+++++|.++|.++=.        +-.+..+|...|++++-.+..+.    =|+....+..+|..+...|..++|++.|.
T Consensus        56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4678888888877522        33466778888888875554443    24455778889999999999999988886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       136 ~A  137 (723)
T 4gyw_A          136 TA  137 (723)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.17  E-value=0.39  Score=27.18  Aligned_cols=53  Identities=15%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..|...|+++++++.+         .+.+..-|++...+..+|..+...|..++|++.|.+
T Consensus        19 ~~~~~~~~~~~~A~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A           19 GNEQMKVENFEAAVHFY---------GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             HHHHHHTTCHHHHHHHH---------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHH---------HHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            33444455555555443         223333455667788999999999999999876644

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=94.11  E-value=0.14  Score=30.05  Aligned_cols=69  Identities=23%  Similarity=0.215  Sum_probs=44.5

Q ss_pred             chhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhh-------CCCC---CchHHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARK-------LPDS---SPLLKPMGEIFVK   57 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~~---~~lL~~ia~~F~~   57 (87)
                      .++|++|..+|.++-.              +..+..+++..|+|++-.+..+.       .++.   ...+..+|..+..
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            3567777777766533              33456777788888765554443       2221   2356677888888


Q ss_pred             CCChHHHHHHHHh
Q psy11102         58 YGLCEQAVYVFDK   70 (87)
Q Consensus        58 ~G~~~~Av~aylk   70 (87)
                      .|..++|++.|.+
T Consensus       102 ~~~~~~A~~~~~~  114 (164)
T 3ro3_A          102 LQDYEKAIDYHLK  114 (164)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            8888888877654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.08  E-value=0.22  Score=28.65  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      -.-+..|.+.|+++++++++-+.         ++.-|++...+..+|..+...|..++|++.|.
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~a---------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   74 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEA---------IKRNPKDAKLYSNRAACYTKLLEFQLALKDCE   74 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHH---------HTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH---------HHcCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            33444555555666665554332         22334556788889999999999999886554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.01  E-value=0.27  Score=36.87  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=55.3

Q ss_pred             chhHHHHHHHHHHhc----------------cHHHHHHHHHHhCCHHHHHHHHhh--------CCCCCch----HHHHHH
Q psy11102          2 TTLVSQAREYYEKCH----------------CYEKLISVYTELGDFEALESCARK--------LPDSSPL----LKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~----------------n~~k~ie~~~~~ed~d~L~~l~~~--------L~~~~~l----L~~ia~   53 (87)
                      .++|++|.++|.++=                -+..++..|...|+|++-+.+.+.        ++++||.    +..+|.
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            357888888887662                245677788889999887766653        5777654    667999


Q ss_pred             HHHhCCChHHHHHHHHhcCCH
Q psy11102         54 IFVKYGLCEQAVYVFDKNKHK   74 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~gd~   74 (87)
                      .+...|..++|+..|.|+=++
T Consensus       380 ~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999998876444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=93.97  E-value=0.25  Score=32.14  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCC
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGL   60 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~   60 (87)
                      .+++++|..+|.++=.        +-.+..+|...|++++-....+..    |++...+..+|..+...|.
T Consensus        67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            3677888888877532        345677888889988766655543    5566777788877654443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=93.90  E-value=0.28  Score=35.22  Aligned_cols=68  Identities=15%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             chhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.++|.++-        -+..+..++...|+|+.-.+..+.    -|.+...+..+|..+...|..+.|++.|.
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  368 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN  368 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            466777877777652        234567778888888775555444    35556777888888888888888877664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=93.90  E-value=0.36  Score=30.84  Aligned_cols=48  Identities=15%  Similarity=0.063  Sum_probs=33.9

Q ss_pred             HHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         23 SVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+++..|+|++-....+.    =|.+......+|..+...|.+++|+++|.+
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            344555555544444333    366678899999999999999999997754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.83  E-value=0.37  Score=30.29  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=27.1

Q ss_pred             HHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         31 FEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        31 ~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ...+++.+..-|++...+..+|..+...|..++|+..|.+
T Consensus        94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3444444544566667777788888888888888877765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=93.68  E-value=0.46  Score=28.54  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             HHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         36 SCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        36 ~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +.++.-|++...+..+|..+...|..++|+.+|.++
T Consensus        42 ~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (121)
T 1hxi_A           42 AVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA   77 (121)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344445667788899999999999999999988653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.61  E-value=0.17  Score=33.62  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=48.8

Q ss_pred             chhHHHHHHHHHHhcc-----------HHHHHHHHHHhCCHHHHHHHHhh----CCCC---CchHHHHHHHHHh------
Q psy11102          2 TTLVSQAREYYEKCHC-----------YEKLISVYTELGDFEALESCARK----LPDS---SPLLKPMGEIFVK------   57 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-----------~~k~ie~~~~~ed~d~L~~l~~~----L~~~---~~lL~~ia~~F~~------   57 (87)
                      .++|++|+++|.+.-.           +-.+..||+..|+|+.-....+.    -|++   ...+-.+|..+..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            4789999999988632           34677889999999875544443    3543   2457778888887      


Q ss_pred             --CCChHHHHHHHHh
Q psy11102         58 --YGLCEQAVYVFDK   70 (87)
Q Consensus        58 --~G~~~~Av~aylk   70 (87)
                        .|..++|++.|.+
T Consensus       108 ~~~~~~~~A~~~~~~  122 (261)
T 3qky_A          108 LDQTDTRKAIEAFQL  122 (261)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHH
Confidence              8888887766543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=93.54  E-value=0.26  Score=34.00  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=11.7

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHH
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .+..+|..+...|.+++|++.|.
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~  179 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQ  179 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Confidence            34455555555555555554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=93.50  E-value=0.23  Score=35.23  Aligned_cols=51  Identities=14%  Similarity=0.193  Sum_probs=24.0

Q ss_pred             HHHHHHHH---hCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         20 KLISVYTE---LGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        20 k~ie~~~~---~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+..++..   .|+++.-.+..+.    -|++...+..+|..+...|..+.|++.|.+
T Consensus       417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34444555   5555543333332    132334445555555555555555555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.48  E-value=0.01  Score=34.01  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCC------CchHHHHHHHHHhCCChHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDS------SPLLKPMGEIFVKYGLCEQ   63 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~------~~lL~~ia~~F~~~G~~~~   63 (87)
                      .++|++|+++|.++-.        +-.+..|+...|+|++-.+..+.    -|++      ...+..+|..+...|..+.
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQI   96 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            5789999999988743        34577899999999876665554    2444      2344555555555555554


Q ss_pred             HHHHH
Q psy11102         64 AVYVF   68 (87)
Q Consensus        64 Av~ay   68 (87)
                      |++.|
T Consensus        97 a~~~~  101 (111)
T 2l6j_A           97 PVVEV  101 (111)
T ss_dssp             CSSSS
T ss_pred             hHhHH
Confidence            44433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=93.29  E-value=0.17  Score=35.24  Aligned_cols=70  Identities=14%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             chhHHHHHHHHHHhcc------------HHHHHHHHHHhCCHHHHHHHH-------hhCCCC---CchHHHHHHHHHhCC
Q psy11102          2 TTLVSQAREYYEKCHC------------YEKLISVYTELGDFEALESCA-------RKLPDS---SPLLKPMGEIFVKYG   59 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------~~k~ie~~~~~ed~d~L~~l~-------~~L~~~---~~lL~~ia~~F~~~G   59 (87)
                      .++|++|..+|.++-.            +..+..+|+..|+|+.-.+..       +.+++.   ...+..+|..+...|
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            3678888888877532            335677788888887766643       333331   366788899999999


Q ss_pred             ChHHHHHHHHhc
Q psy11102         60 LCEQAVYVFDKN   71 (87)
Q Consensus        60 ~~~~Av~aylk~   71 (87)
                      ..++|++.|.++
T Consensus       141 ~~~~A~~~~~~a  152 (411)
T 4a1s_A          141 RFDEAAICCERH  152 (411)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999888887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=93.26  E-value=0.18  Score=29.55  Aligned_cols=69  Identities=28%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             chhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhh-------CCCC---CchHHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARK-------LPDS---SPLLKPMGEIFVK   57 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~~---~~lL~~ia~~F~~   57 (87)
                      .+++++|.++|.++-.              +-.+..++...|+++.-.+..+.       .+..   ...+..+|..+..
T Consensus        62 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           62 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence            3567777777776443              23345677788888765554433       2221   2345667777777


Q ss_pred             CCChHHHHHHHHh
Q psy11102         58 YGLCEQAVYVFDK   70 (87)
Q Consensus        58 ~G~~~~Av~aylk   70 (87)
                      .|..++|++.|.+
T Consensus       142 ~g~~~~A~~~~~~  154 (164)
T 3ro3_A          142 LGNHDQAMHFAEK  154 (164)
T ss_dssp             HTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHH
Confidence            7777777776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.25  E-value=0.27  Score=38.38  Aligned_cols=70  Identities=13%  Similarity=-0.033  Sum_probs=53.1

Q ss_pred             chhHHHHHHHHHHhc----------------cHHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCCh
Q psy11102          2 TTLVSQAREYYEKCH----------------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLC   61 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~----------------n~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~   61 (87)
                      .+++++|.+.|.++-                -+-....+|...|+|++-.+..+..    |++...+..+|..+...|..
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            467888888888764                2445677888899988766555443    55667888899999999999


Q ss_pred             HHHHHHHHhc
Q psy11102         62 EQAVYVFDKN   71 (87)
Q Consensus        62 ~~Av~aylk~   71 (87)
                      ++|++.|.++
T Consensus       484 ~~A~~~~~~a  493 (681)
T 2pzi_A          484 DSATKHFTEV  493 (681)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=93.20  E-value=0.27  Score=32.27  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhc--------------cHHHHHHHHHHhCCHHHHHHHHhhC-------CCC---CchHHHHHHHHHhC
Q psy11102          3 TLVSQAREYYEKCH--------------CYEKLISVYTELGDFEALESCARKL-------PDS---SPLLKPMGEIFVKY   58 (87)
Q Consensus         3 ~~w~~A~~yY~~~~--------------n~~k~ie~~~~~ed~d~L~~l~~~L-------~~~---~~lL~~ia~~F~~~   58 (87)
                      ++|++|.++|.++-              -+..+..++...|+++.-.+..+..       +..   ...+..+|..+...
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  276 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence            56777777776653              2345566777888877655544432       221   24567788888888


Q ss_pred             CChHHHHHHHHh
Q psy11102         59 GLCEQAVYVFDK   70 (87)
Q Consensus        59 G~~~~Av~aylk   70 (87)
                      |..+.|++.|.+
T Consensus       277 g~~~~A~~~~~~  288 (338)
T 3ro2_A          277 QDYEKAIDYHLK  288 (338)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            888888776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=93.19  E-value=0.25  Score=34.77  Aligned_cols=68  Identities=15%  Similarity=0.095  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHhccHH--------------HHHHHHHHhCCHHHHHHHHhh-CC-----C---CCchHHHHHHHHHhCC
Q psy11102          3 TLVSQAREYYEKCHCYE--------------KLISVYTELGDFEALESCARK-LP-----D---SSPLLKPMGEIFVKYG   59 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~--------------k~ie~~~~~ed~d~L~~l~~~-L~-----~---~~~lL~~ia~~F~~~G   59 (87)
                      ++|++|.++|.++-...              .+..+|...|+++.-.+..+. +.     .   ....+..+|..+...|
T Consensus       196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g  275 (378)
T 3q15_A          196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG  275 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence            56777777776654432              245666777777654443332 11     1   1245667777777777


Q ss_pred             ChHHHHHHHHh
Q psy11102         60 LCEQAVYVFDK   70 (87)
Q Consensus        60 ~~~~Av~aylk   70 (87)
                      ..++|.+.|.+
T Consensus       276 ~~~~A~~~~~~  286 (378)
T 3q15_A          276 QTQKAFQFIEE  286 (378)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            77777777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=93.17  E-value=0.38  Score=36.86  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             chhHHHHHHHHHHhcc----------------HHHHHHHHHHhCCHHHHHHHHhh--------CCCCCch----HHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC----------------YEKLISVYTELGDFEALESCARK--------LPDSSPL----LKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n----------------~~k~ie~~~~~ed~d~L~~l~~~--------L~~~~~l----L~~ia~   53 (87)
                      .|+|++|..+|.++=.                +..++..|...|+|++-+.+.+.        ++++||.    +..+|.
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4678888888877532                34567788888998887665543        5776644    677899


Q ss_pred             HHHhCCChHHHHHHHHhcCCHH
Q psy11102         54 IFVKYGLCEQAVYVFDKNKHKS   75 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~gd~k   75 (87)
                      .+...|..++|...|.|+=++.
T Consensus       402 ~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          402 TNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988764443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=93.11  E-value=0.66  Score=27.69  Aligned_cols=51  Identities=10%  Similarity=0.019  Sum_probs=33.8

Q ss_pred             HHHHHHHHhCCHHHHHHHH----hhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         20 KLISVYTELGDFEALESCA----RKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        20 k~ie~~~~~ed~d~L~~l~----~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ....+++..++|+.-....    +.-|++...+..+|..+...|..++|++.|.+
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   72 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR   72 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344555555555433333    33455668889999999999999999876644

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.98  E-value=0.41  Score=28.06  Aligned_cols=56  Identities=16%  Similarity=0.128  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ..-+..|.+.|+++++++++-+         .++.-|++   ...+..+|..+...|..++|++.|.+
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~---------a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   90 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQ---------ALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK   90 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHH---------HHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHH---------HHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            3344445555556665554432         22223443   46688889999999999999877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.96  E-value=0.59  Score=32.38  Aligned_cols=45  Identities=13%  Similarity=0.096  Sum_probs=21.0

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHH
Q psy11102         21 LISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAV   65 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av   65 (87)
                      +..++...|+|++-++..+..    |++...+..+|..+...|..++++
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            334455555555544444331    333344555555555555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=92.95  E-value=0.7  Score=31.37  Aligned_cols=70  Identities=7%  Similarity=0.022  Sum_probs=44.6

Q ss_pred             chhHHHHHHHHHHhccH--------------HHHHHHHHHhCCHHHHH----HHHhhCCCC-Cc-----hHHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHCY--------------EKLISVYTELGDFEALE----SCARKLPDS-SP-----LLKPMGEIFVK   57 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------------~k~ie~~~~~ed~d~L~----~l~~~L~~~-~~-----lL~~ia~~F~~   57 (87)
                      .++|++|.++|.+.-+.              ..+..++...++|+.-.    +.....++. +.     .+..+|..+..
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            36788888888774331              12445555556776633    333322332 22     57889999999


Q ss_pred             CCChHHHHHHHHhc
Q psy11102         58 YGLCEQAVYVFDKN   71 (87)
Q Consensus        58 ~G~~~~Av~aylk~   71 (87)
                      .|..++|++.|.++
T Consensus       168 ~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          168 NGYLKKGIDLFEQI  181 (293)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999998877664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=92.94  E-value=0.28  Score=33.60  Aligned_cols=68  Identities=24%  Similarity=0.235  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhc--------------cHHHHHHHHHHhCCHHHHHHHHhh-------CCCC---CchHHHHHHHHHhC
Q psy11102          3 TLVSQAREYYEKCH--------------CYEKLISVYTELGDFEALESCARK-------LPDS---SPLLKPMGEIFVKY   58 (87)
Q Consensus         3 ~~w~~A~~yY~~~~--------------n~~k~ie~~~~~ed~d~L~~l~~~-------L~~~---~~lL~~ia~~F~~~   58 (87)
                      ++|++|.++|.++-              -+..+..+|...|+++.-....+.       .+..   ...+..+|..+...
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  280 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  280 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence            56666666666653              234456677777877765544433       2221   24566778888888


Q ss_pred             CChHHHHHHHHh
Q psy11102         59 GLCEQAVYVFDK   70 (87)
Q Consensus        59 G~~~~Av~aylk   70 (87)
                      |..++|++.|.+
T Consensus       281 g~~~~A~~~~~~  292 (406)
T 3sf4_A          281 QDYEKAIDYHLK  292 (406)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            888888766544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=92.90  E-value=0.75  Score=31.21  Aligned_cols=69  Identities=13%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHhc-------c-------HHHHHHHHHHhCCHHHHHHHH-------hhCCCCC----chHHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCH-------C-------YEKLISVYTELGDFEALESCA-------RKLPDSS----PLLKPMGEIFVK   57 (87)
Q Consensus         3 ~~w~~A~~yY~~~~-------n-------~~k~ie~~~~~ed~d~L~~l~-------~~L~~~~----~lL~~ia~~F~~   57 (87)
                      +++++|.++|.++=       +       +..+..+|+..|+|+.-....       +..|+..    ..+..+|..+..
T Consensus       129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            47788888877662       1       224456777888887644443       3344421    467788888888


Q ss_pred             CCChHHHHHHHHhc
Q psy11102         58 YGLCEQAVYVFDKN   71 (87)
Q Consensus        58 ~G~~~~Av~aylk~   71 (87)
                      .|..++|++.|.++
T Consensus       209 ~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          209 DSRYEESLYQVNKA  222 (293)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH
Confidence            88888888776553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=92.82  E-value=0.42  Score=33.92  Aligned_cols=70  Identities=20%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             chhHHHHHHHHHHhccH-----------------HHHHHHHHHhCCHHHHHH-------HHhhCCCC-----CchHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY-----------------EKLISVYTELGDFEALES-------CARKLPDS-----SPLLKPMG   52 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------------~k~ie~~~~~ed~d~L~~-------l~~~L~~~-----~~lL~~ia   52 (87)
                      .|++++|.++|.++-..                 ..+..+|+..|+|++-..       +.+.++..     .......|
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            47889999999887432                 346678888999876544       33444331     13455566


Q ss_pred             HHHHhC--CChHHHHHHHHhc
Q psy11102         53 EIFVKY--GLCEQAVYVFDKN   71 (87)
Q Consensus        53 ~~F~~~--G~~~~Av~aylk~   71 (87)
                      .-+...  +.+++|+++|.|+
T Consensus       144 ~~~~~~~~~~y~~A~~~~~ka  164 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKA  164 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHH
Confidence            555444  4688999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=92.69  E-value=0.31  Score=33.85  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhhC----CCCC------chHHHHHHHHHhCCC
Q psy11102          5 VSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARKL----PDSS------PLLKPMGEIFVKYGL   60 (87)
Q Consensus         5 w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~------~lL~~ia~~F~~~G~   60 (87)
                      |++|.++|.++-.              +..+..+|+..|+|++-.+..+..    ++..      ..+..+|..+...|.
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence            7888888877633              334667788888887755544432    2211      267788888889999


Q ss_pred             hHHHHHHHHh
Q psy11102         61 CEQAVYVFDK   70 (87)
Q Consensus        61 ~~~Av~aylk   70 (87)
                      .++|++.|.+
T Consensus       279 ~~~A~~~~~~  288 (411)
T 4a1s_A          279 FEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=92.68  E-value=0.33  Score=34.03  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             chhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhh-------CCC--C-CchHHHHHHHHHh
Q psy11102          2 TTLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARK-------LPD--S-SPLLKPMGEIFVK   57 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~--~-~~lL~~ia~~F~~   57 (87)
                      .++|++|.++|.++-.              +..+..+|...|+|+.-.+..+.       ...  . ...+..+|..+..
T Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            3678888888877653              34467788888888765544333       122  1 3557888999999


Q ss_pred             CCChHHHHHHHHhc
Q psy11102         58 YGLCEQAVYVFDKN   71 (87)
Q Consensus        58 ~G~~~~Av~aylk~   71 (87)
                      .|..++|.+.|.++
T Consensus       277 ~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          277 LGKIDKAHEYHSKG  290 (383)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999998887664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=92.65  E-value=0.18  Score=34.64  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHhcc------------HHHHHHHHHHhCCHHHHHHHHh-------hCCCC---CchHHHHHHHHHhCC
Q psy11102          2 TTLVSQAREYYEKCHC------------YEKLISVYTELGDFEALESCAR-------KLPDS---SPLLKPMGEIFVKYG   59 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------~~k~ie~~~~~ed~d~L~~l~~-------~L~~~---~~lL~~ia~~F~~~G   59 (87)
                      .++|++|..+|.++-.            +..+..+++..|+|+.-....+       .+++.   ...+..+|..+...|
T Consensus        22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            4678888888876532            2356677888888877666433       33331   356777888888888


Q ss_pred             ChHHHHHHHHhc
Q psy11102         60 LCEQAVYVFDKN   71 (87)
Q Consensus        60 ~~~~Av~aylk~   71 (87)
                      ..+.|++.|.++
T Consensus       102 ~~~~A~~~~~~a  113 (406)
T 3sf4_A          102 NFDEAIVCCQRH  113 (406)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            888888776553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.62  E-value=0.28  Score=38.28  Aligned_cols=70  Identities=11%  Similarity=-0.048  Sum_probs=49.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|.+.|.++=.        +-.+..+|...|+|++ .+..+.    =|++......+|..+...|..++|++.|.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3567777777777532        2356677788888877 444333    24555778888888888888888888888


Q ss_pred             hcC
Q psy11102         70 KNK   72 (87)
Q Consensus        70 k~g   72 (87)
                      ++=
T Consensus       559 ~al  561 (681)
T 2pzi_A          559 EVP  561 (681)
T ss_dssp             TSC
T ss_pred             hhc
Confidence            763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=92.48  E-value=0.41  Score=33.51  Aligned_cols=35  Identities=14%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             hhHHHHHHHHHHh-------cc-------HHHHHHHHHHhCCHHHHHHH
Q psy11102          3 TLVSQAREYYEKC-------HC-------YEKLISVYTELGDFEALESC   37 (87)
Q Consensus         3 ~~w~~A~~yY~~~-------~n-------~~k~ie~~~~~ed~d~L~~l   37 (87)
                      +++++|.++|.++       ++       +-.+..+|...|++++-.+.
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  286 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY  286 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4555555555554       33       56666666666666554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.29  E-value=1  Score=31.18  Aligned_cols=43  Identities=16%  Similarity=0.038  Sum_probs=17.2

Q ss_pred             HHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHH
Q psy11102         24 VYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYV   67 (87)
Q Consensus        24 ~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~a   67 (87)
                      ++...|++++-.+..+. |.+.+....+|..+.+.|..++|.+.
T Consensus       110 ~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A          110 IYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             HHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            33344444444433333 32233333444444444444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=92.10  E-value=0.58  Score=31.78  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=49.0

Q ss_pred             hhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHH-------HhhCCCCC----chHHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESC-------ARKLPDSS----PLLKPMGEIFVK   57 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l-------~~~L~~~~----~lL~~ia~~F~~   57 (87)
                      +++++|.++|.++=.              +-.+..+|+..|+|+.-...       .+.+|.+.    ..+..+|..+..
T Consensus       129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            478888888887643              45666788888888764433       33443432    467789999999


Q ss_pred             CCChHHHHHHHHh
Q psy11102         58 YGLCEQAVYVFDK   70 (87)
Q Consensus        58 ~G~~~~Av~aylk   70 (87)
                      .|.+++|++.|.+
T Consensus       209 ~~~y~~A~~~~~~  221 (293)
T 3u3w_A          209 DSRYEESLYQVNK  221 (293)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHH
Confidence            9999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.07  E-value=1.1  Score=30.56  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhcc-H--------HHHHHHHHHhCCHHHHHHHHhh---CCC-CCc-hHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          5 VSQAREYYEKCHC-Y--------EKLISVYTELGDFEALESCARK---LPD-SSP-LLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         5 w~~A~~yY~~~~n-~--------~k~ie~~~~~ed~d~L~~l~~~---L~~-~~~-lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +++|...|.++=. .        ...+..+...|+++...++-+.   ++. +.. .....|......|..+.|+..|.+
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3666666666543 1        2445555666777666555443   233 333 677778877778888888777765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=92.04  E-value=1.2  Score=28.28  Aligned_cols=25  Identities=12%  Similarity=-0.035  Sum_probs=20.5

Q ss_pred             chHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         46 PLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        46 ~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ..+..+|..+...|..++|+..|.+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5778899999999999999876654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=91.97  E-value=1.2  Score=27.50  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             hhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHH-------hhCCCC----CchHHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCA-------RKLPDS----SPLLKPMGEIFVK   57 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~-------~~L~~~----~~lL~~ia~~F~~   57 (87)
                      ++|++|..+|.++-.              +..+..++...|+|+.-.+..       +..++.    ...+..+|..+..
T Consensus        40 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  119 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH  119 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            556666666655533              223344566666666533332       223322    1335666777777


Q ss_pred             CCChHHHHHHHHh
Q psy11102         58 YGLCEQAVYVFDK   70 (87)
Q Consensus        58 ~G~~~~Av~aylk   70 (87)
                      .|..++|...|.+
T Consensus       120 ~g~~~~A~~~~~~  132 (203)
T 3gw4_A          120 FGDLAGARQEYEK  132 (203)
T ss_dssp             HTCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHH
Confidence            7777777665543

>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=91.88  E-value=0.075  Score=29.10  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHhccHHHHHHHHH
Q psy11102          4 LVSQAREYYEKCHCYEKLISVYT   26 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~~k~ie~~~   26 (87)
                      +|++|..||.++.-++..++..-
T Consensus        20 ~id~A~~~Ye~gi~ye~~ie~~k   42 (47)
T 1pgy_A           20 SIEEATEFYENDVTYERYLEILK   42 (47)
T ss_dssp             CSHHHHHHHHHHCSSHHHHHHHH
T ss_pred             ChhhHHHHHHcCchHHHHHHHHH
Confidence            68999999999999999888653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=91.82  E-value=0.62  Score=30.81  Aligned_cols=24  Identities=8%  Similarity=0.164  Sum_probs=12.4

Q ss_pred             chHHHHHHHHHh----CCChHHHHHHHH
Q psy11102         46 PLLKPMGEIFVK----YGLCEQAVYVFD   69 (87)
Q Consensus        46 ~lL~~ia~~F~~----~G~~~~Av~ayl   69 (87)
                      ..+..+|..+..    .|..++|++.|.
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~  102 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYS  102 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHH
Confidence            444455555555    555555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=91.70  E-value=1  Score=30.85  Aligned_cols=30  Identities=7%  Similarity=0.064  Sum_probs=18.0

Q ss_pred             CCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         42 PDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        42 ~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      |++..+....|.++.+.|..+.|...|.++
T Consensus       200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            444455666666666666666666666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=91.66  E-value=0.37  Score=35.72  Aligned_cols=69  Identities=12%  Similarity=-0.056  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHh--------CCHHHHHHHHhh----CC---CCCchHHHHHHHHHhCC
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTEL--------GDFEALESCARK----LP---DSSPLLKPMGEIFVKYG   59 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~--------ed~d~L~~l~~~----L~---~~~~lL~~ia~~F~~~G   59 (87)
                      ++|++|.++|.++=.        +..+..+|...        ++|++-.+..+.    -|   .+...+..+|..+...|
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            789999999988632        34566677776        777765554444    35   45578899999999999


Q ss_pred             ChHHHHHHHHhc
Q psy11102         60 LCEQAVYVFDKN   71 (87)
Q Consensus        60 ~~~~Av~aylk~   71 (87)
                      ..++|++.|.++
T Consensus       273 ~~~~A~~~~~~a  284 (474)
T 4abn_A          273 SYGEALEGFSQA  284 (474)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.44  E-value=1.1  Score=29.21  Aligned_cols=51  Identities=25%  Similarity=0.312  Sum_probs=36.1

Q ss_pred             HHHHHHHHhCCHHHHH----HHHhhCCCCC---chHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         20 KLISVYTELGDFEALE----SCARKLPDSS---PLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        20 k~ie~~~~~ed~d~L~----~l~~~L~~~~---~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ....+|+..|+|+.-.    ++++.-|++.   +.+..+|..+...|..++|++.|-+
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            3456788888887654    4444456542   5688888888888888888887754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=91.37  E-value=1.8  Score=30.19  Aligned_cols=37  Identities=14%  Similarity=-0.053  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHHhcc-------------HHHHHHHHHHhCCHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC-------------YEKLISVYTELGDFEALESCAR   39 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n-------------~~k~ie~~~~~ed~d~L~~l~~   39 (87)
                      +++++|.++|.++-.             +-.+..+|+..|+++.-....+
T Consensus       236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  285 (378)
T 3q15_A          236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE  285 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            567777777777654             3445667777777776544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=91.31  E-value=0.76  Score=24.81  Aligned_cols=57  Identities=23%  Similarity=0.306  Sum_probs=38.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhC
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKY   58 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~   58 (87)
                      .++|++|..+|.++-.        +..+..++...+++++-.+..+.    -|.+...+..+|..+...
T Consensus        22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            4678889988887632        34677888899999876554443    344556666676665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=91.25  E-value=0.58  Score=30.96  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             chhHHHHHHHHHHhccH------HHHHHHHHH----hCCHHHHHHHHhhC-CCC-CchHHHHHHHHHh----CCChHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY------EKLISVYTE----LGDFEALESCARKL-PDS-SPLLKPMGEIFVK----YGLCEQAV   65 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~------~k~ie~~~~----~ed~d~L~~l~~~L-~~~-~~lL~~ia~~F~~----~G~~~~Av   65 (87)
                      .+++++|.++|.++-..      -.+..+|..    .+++++-.+..+.. ..+ ...+..+|..+..    .|..++|+
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHH
Confidence            34566666666665321      234445555    66666555444432 223 3556677777776    77777777


Q ss_pred             HHHHh
Q psy11102         66 YVFDK   70 (87)
Q Consensus        66 ~aylk   70 (87)
                      +.|.+
T Consensus       135 ~~~~~  139 (273)
T 1ouv_A          135 EYFTK  139 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=90.97  E-value=1.2  Score=30.45  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=16.9

Q ss_pred             CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         42 PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        42 ~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      |++......+|..+...|..++|++.|.+
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~  244 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFG  244 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            44445555666666666666666666554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=90.62  E-value=0.28  Score=34.88  Aligned_cols=31  Identities=13%  Similarity=-0.089  Sum_probs=17.9

Q ss_pred             CCCCchHHHHHHHHHhCCChHHHHHHHHhcC
Q psy11102         42 PDSSPLLKPMGEIFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus        42 ~~~~~lL~~ia~~F~~~G~~~~Av~aylk~g   72 (87)
                      |.+...+..+|..+...|..++|++.|.|+=
T Consensus       427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          427 GADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             C-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5556789999999999999999999998753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=90.33  E-value=0.71  Score=28.90  Aligned_cols=28  Identities=7%  Similarity=-0.013  Sum_probs=15.9

Q ss_pred             CCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         44 SSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        44 ~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      +...+..+|..+...|..++|+..|.+.
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a   66 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATI   66 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            3455555666666666666666555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=89.97  E-value=1.1  Score=27.70  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHhc--------cHHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHH-HHhCCCh--HHHHHH
Q psy11102          3 TLVSQAREYYEKCH--------CYEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEI-FVKYGLC--EQAVYV   67 (87)
Q Consensus         3 ~~w~~A~~yY~~~~--------n~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~-F~~~G~~--~~Av~a   67 (87)
                      +++++|..+|.++-        -+..+..+|+..|+|+.-....+.    -|.+...+..+|.. +...|..  +.|+..
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~  103 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM  103 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            44555555555431        234566677777777765544443    35566778888988 7788887  888776


Q ss_pred             HHh
Q psy11102         68 FDK   70 (87)
Q Consensus        68 ylk   70 (87)
                      |.+
T Consensus       104 ~~~  106 (177)
T 2e2e_A          104 IDK  106 (177)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=89.93  E-value=2.1  Score=34.38  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=56.9

Q ss_pred             chhHHHHHHHHHHhccH----------HHHHHHHHHhCCHHHHH-----------HHHhh-CC-----C----CCchHHH
Q psy11102          2 TTLVSQAREYYEKCHCY----------EKLISVYTELGDFEALE-----------SCARK-LP-----D----SSPLLKP   50 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------~k~ie~~~~~ed~d~L~-----------~l~~~-L~-----~----~~~lL~~   50 (87)
                      ..|...|++||..-.-.          +-.-|.....++|+.|-           .+++. .+     +    ...++..
T Consensus       369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~  448 (661)
T 2qx5_A          369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ  448 (661)
T ss_dssp             TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Confidence            35788999999865332          22344455667888774           23332 11     1    1134456


Q ss_pred             HHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhh
Q psy11102         51 MGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ   83 (87)
Q Consensus        51 ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~   83 (87)
                      .|..+...|..+.||..|.-+|++..+|++.-+
T Consensus       449 aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~  481 (661)
T 2qx5_A          449 AARRADEDGRIYDSILLYQLAEEYDIVITLVNS  481 (661)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence            788999999999999999999999999988643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=89.26  E-value=0.96  Score=32.59  Aligned_cols=48  Identities=10%  Similarity=0.034  Sum_probs=23.7

Q ss_pred             HHHHhCCHHHHHHHHhhCCCC-Cc-----hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         24 VYTELGDFEALESCARKLPDS-SP-----LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        24 ~~~~~ed~d~L~~l~~~L~~~-~~-----lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .++..++|+..+...+....- ++     .--.+|..+...|+.++|...|.+.
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a  197 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA  197 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555555555555555433221 22     2233455555555555555555554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=89.22  E-value=2  Score=29.31  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=37.9

Q ss_pred             HHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          7 QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         7 ~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .-+..|.+.|++++|+++|-         +.+..-|.+...+..+|..+...|..++|++.|.+
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~---------~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~   63 (281)
T 2c2l_A            9 EQGNRLFVGRKYPEAAACYG---------RAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR   63 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH---------HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH---------HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            33445555666666666553         22333466678899999999999999999887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=89.05  E-value=2.5  Score=28.51  Aligned_cols=49  Identities=14%  Similarity=0.221  Sum_probs=32.3

Q ss_pred             HHHHHhCCHHHHHHHHhh-C---CCC-C-----chHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         23 SVYTELGDFEALESCARK-L---PDS-S-----PLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~~~-L---~~~-~-----~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .++...++|+.-....+. |   ++. +     ..+..+|..+...|..++|++.|.++
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ka  181 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344556687765554322 2   221 1     25678899999999999998888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=88.88  E-value=0.81  Score=25.51  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             chhHHHHHHHHHHhc---------cHHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH---------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF   68 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~---------n~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ay   68 (87)
                      .++|++|+++|.++-         -+-.+..+|+..|+|++-.+..+..    |++......        +...+|...|
T Consensus        13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~   84 (99)
T 2kc7_A           13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFY   84 (99)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHH
Confidence            478999999998762         2234678899999998766555542    444333211        5556666666


Q ss_pred             HhcC
Q psy11102         69 DKNK   72 (87)
Q Consensus        69 lk~g   72 (87)
                      -+.+
T Consensus        85 ~~~~   88 (99)
T 2kc7_A           85 NKDM   88 (99)
T ss_dssp             CCTT
T ss_pred             HHHh
Confidence            5554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.77  E-value=0.31  Score=34.22  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=42.3

Q ss_pred             chhHHHHHHHHHHhcc-------------------------HHHHHHHHHHhCCHHHHHHHHhhCC-------CC--Cc-
Q psy11102          2 TTLVSQAREYYEKCHC-------------------------YEKLISVYTELGDFEALESCARKLP-------DS--SP-   46 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n-------------------------~~k~ie~~~~~ed~d~L~~l~~~L~-------~~--~~-   46 (87)
                      .++|++|.+.|.++-+                         +..+..+|...|+|+++.+....+-       +.  .. 
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            3678888888876532                         4567788888888888877666541       11  11 


Q ss_pred             hHHHHHHHHHhCCChHHHHHHHH
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      ....+|......|..+.|++.|.
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~  119 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCE  119 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            23334555556677777665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.68  E-value=1.3  Score=31.02  Aligned_cols=70  Identities=10%  Similarity=0.016  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhhC-------CCC---CchHHHHHHHHHhC
Q psy11102          3 TLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARKL-------PDS---SPLLKPMGEIFVKY   58 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~L-------~~~---~~lL~~ia~~F~~~   58 (87)
                      +++++|.++|.++-.              ..+++.+|...|+|+....+.+.+       ++.   ...+..+|..+...
T Consensus       109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
T 4b4t_Q          109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL  188 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            456677777665432              346788888888888776666553       222   24677888999999


Q ss_pred             CChHHHHHHHHhcC
Q psy11102         59 GLCEQAVYVFDKNK   72 (87)
Q Consensus        59 G~~~~Av~aylk~g   72 (87)
                      |..++|...|.++-
T Consensus       189 ~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          189 RNLAKSKASLTAAR  202 (434)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            99999998887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=88.27  E-value=0.67  Score=28.46  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhC---------------CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          5 VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKL---------------PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         5 w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L---------------~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      |..-...|.+.|+++.++++|-+.      .++....               |....++..+|.-+...|.++.|+..|.
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDA------LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            444555666778889998887553      2222211               1123567778888888888888876543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=88.02  E-value=1.8  Score=25.43  Aligned_cols=26  Identities=15%  Similarity=0.154  Sum_probs=16.0

Q ss_pred             chHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         46 PLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        46 ~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .++..+|.-+...|..+.|+..|.++
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            45566666666666666666665544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=87.62  E-value=2.7  Score=29.58  Aligned_cols=25  Identities=12%  Similarity=0.026  Sum_probs=21.3

Q ss_pred             chHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         46 PLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        46 ~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ..+..+|..+...|..++|++.|.+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6788999999999999999876544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=87.45  E-value=4.3  Score=26.30  Aligned_cols=68  Identities=21%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHhccH------HHHHHHHHH----hCCHHHHHHHHhhC-CCCC-----chHHHHHHHHHh----CCChHH
Q psy11102          4 LVSQAREYYEKCHCY------EKLISVYTE----LGDFEALESCARKL-PDSS-----PLLKPMGEIFVK----YGLCEQ   63 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~------~k~ie~~~~----~ed~d~L~~l~~~L-~~~~-----~lL~~ia~~F~~----~G~~~~   63 (87)
                      ++++|.++|.++-+.      -.+..+|..    .+|+++=.+..+.. ..++     +....+|.++..    .+..++
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            667777777766221      122333333    45665555544443 2233     456677777776    666777


Q ss_pred             HHHHHHhc
Q psy11102         64 AVYVFDKN   71 (87)
Q Consensus        64 Av~aylk~   71 (87)
                      |++.|.++
T Consensus       148 A~~~~~~A  155 (212)
T 3rjv_A          148 ASEYFKGS  155 (212)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=87.31  E-value=2.6  Score=30.97  Aligned_cols=69  Identities=10%  Similarity=0.041  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhcc---------HHHHHHHHHHhCCHHHHHHHHh----hCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHC---------YEKLISVYTELGDFEALESCAR----KLPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n---------~~k~ie~~~~~ed~d~L~~l~~----~L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      +++++|.++|.++-.         ...+.-++...|+++.-..+.+    .-|++..+....+.++.+.|..+.|...|.
T Consensus       370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            456666666666532         1111112334666665444433    336566778888888888888888888887


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       450 ~a  451 (530)
T 2ooe_A          450 RV  451 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=87.06  E-value=1.7  Score=29.90  Aligned_cols=67  Identities=6%  Similarity=-0.012  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHHhccH--------------HHHHHHHHHhCCHHHHHHHHhh-------CCCC-----CchHHHHHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY--------------EKLISVYTELGDFEALESCARK-------LPDS-----SPLLKPMGEIFV   56 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~--------------~k~ie~~~~~ed~d~L~~l~~~-------L~~~-----~~lL~~ia~~F~   56 (87)
                      ++++.|.++|.++-..              ..+..++...|+|+.-....+.       .+..     ...+..+|..+.
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            4556666666554332              2345566677777655444332       2211     123445677777


Q ss_pred             hCCChHHHHHHHH
Q psy11102         57 KYGLCEQAVYVFD   69 (87)
Q Consensus        57 ~~G~~~~Av~ayl   69 (87)
                      ..|..++|...|.
T Consensus       147 ~~g~~~~A~~~~~  159 (373)
T 1hz4_A          147 AWARLDEAEASAR  159 (373)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HhcCHHHHHHHHH
Confidence            7777777766554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=86.98  E-value=4.4  Score=29.40  Aligned_cols=25  Identities=8%  Similarity=0.017  Sum_probs=11.9

Q ss_pred             chHHHHHHHHHh----CCChHHHHHHHHh
Q psy11102         46 PLLKPMGEIFVK----YGLCEQAVYVFDK   70 (87)
Q Consensus        46 ~lL~~ia~~F~~----~G~~~~Av~aylk   70 (87)
                      .....+|.++.+    .+..+.|++.|.+
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  212 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRK  212 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence            334444555444    4455555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=86.15  E-value=1.8  Score=28.68  Aligned_cols=56  Identities=11%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCC----CCc-----hHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPD----SSP-----LLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~----~~~-----lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .-+.+.|+++.++++|-+      -.++....|+    ++.     .....|.-+.+.|.+++|+.+|-++
T Consensus        19 ~~l~~~g~~eeAi~~Y~k------AL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRR------AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHH------HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHH------HHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334456778888877643      2333333222    222     6778899999999999999988654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=86.07  E-value=3.5  Score=28.13  Aligned_cols=49  Identities=8%  Similarity=0.016  Sum_probs=29.8

Q ss_pred             HHHHHhCCHHHHHHHHh----hCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         23 SVYTELGDFEALESCAR----KLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        23 e~~~~~ed~d~L~~l~~----~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..+...|++++-+.+.+    .-|++...+..+|..+...|..++|++.|.+.
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            33444444444333333    33555567777788788888888887777665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=85.91  E-value=1.7  Score=24.90  Aligned_cols=38  Identities=16%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             HHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         33 ALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        33 ~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+++.++.-|++...+..+|..+...|..++|+..|.+
T Consensus         7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   44 (115)
T 2kat_A            7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA   44 (115)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44555555566668889999999999999999887654

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=85.22  E-value=2.7  Score=31.68  Aligned_cols=39  Identities=5%  Similarity=0.086  Sum_probs=34.9

Q ss_pred             CchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhh
Q psy11102         45 SPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQ   83 (87)
Q Consensus        45 ~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~   83 (87)
                      ..+...+|+.+...|..+.|.-||+=+|++.+.+..-.+
T Consensus       248 ~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~  286 (399)
T 2pm7_A          248 NEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLS  286 (399)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHH
Confidence            467789999999999999999999999999999887544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=85.06  E-value=2.4  Score=30.52  Aligned_cols=70  Identities=10%  Similarity=-0.041  Sum_probs=52.7

Q ss_pred             chhHHHHHHHHHHhccH----------HHHHHHHHHhCCHHHHHHHHhhCCC-CC-c-----hHHHHHHHHHhCCChHHH
Q psy11102          2 TTLVSQAREYYEKCHCY----------EKLISVYTELGDFEALESCARKLPD-SS-P-----LLKPMGEIFVKYGLCEQA   64 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~----------~k~ie~~~~~ed~d~L~~l~~~L~~-~~-~-----lL~~ia~~F~~~G~~~~A   64 (87)
                      .++|+.|..+|.++...          -.+-.++..+|+|++-.+.-+.... .. |     .+-..|.-+...|..++|
T Consensus       148 ~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          148 AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            47899999999888753          2344577789999887766665433 22 2     467889999999999999


Q ss_pred             HHHHHhc
Q psy11102         65 VYVFDKN   71 (87)
Q Consensus        65 v~aylk~   71 (87)
                      +..|-+.
T Consensus       228 ~~~l~~a  234 (282)
T 4f3v_A          228 VALLEWL  234 (282)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=84.34  E-value=3  Score=30.38  Aligned_cols=69  Identities=9%  Similarity=0.063  Sum_probs=48.3

Q ss_pred             chhHHHHHHHHHHh-------ccHH---HHHHHHHHhCCHHHHHHHHhhC---CC-----CCchHHHHHH----HHHhCC
Q psy11102          2 TTLVSQAREYYEKC-------HCYE---KLISVYTELGDFEALESCARKL---PD-----SSPLLKPMGE----IFVKYG   59 (87)
Q Consensus         2 ~~~w~~A~~yY~~~-------~n~~---k~ie~~~~~ed~d~L~~l~~~L---~~-----~~~lL~~ia~----~F~~~G   59 (87)
                      .+++++|.+++.++       ++.+   .+++++.+.|..|.-.++.+.+   ++     ++..+..+++    .....+
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            47899999999998       5554   6789999999999988877554   43     2455666653    333344


Q ss_pred             ChHHHHHHHHh
Q psy11102         60 LCEQAVYVFDK   70 (87)
Q Consensus        60 ~~~~Av~aylk   70 (87)
                      ..++|...|-.
T Consensus       193 ~~q~A~~~f~E  203 (310)
T 3mv2_B          193 TATSNFYYYEE  203 (310)
T ss_dssp             TTTHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            77777666643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=84.07  E-value=1.6  Score=28.91  Aligned_cols=30  Identities=13%  Similarity=0.328  Sum_probs=24.0

Q ss_pred             CCCCchHHHHHHHHHhCC-----------ChHHHHHHHHhc
Q psy11102         42 PDSSPLLKPMGEIFVKYG-----------LCEQAVYVFDKN   71 (87)
Q Consensus        42 ~~~~~lL~~ia~~F~~~G-----------~~~~Av~aylk~   71 (87)
                      |+....+-.+|.-+.+.|           ..++|+++|.|+
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA  117 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA  117 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence            566778888999998875           889999888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=83.38  E-value=9.9  Score=32.05  Aligned_cols=78  Identities=10%  Similarity=-0.009  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhh-----------------------CCCC----CchHHHHHHHHHhC
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARK-----------------------LPDS----SPLLKPMGEIFVKY   58 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~-----------------------L~~~----~~lL~~ia~~F~~~   58 (87)
                      +.=+++..+.+.+..|+.++.+.+..|.|++.+++                       ++..    ..+|.-+-+.|.+.
T Consensus       149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~  228 (963)
T 4ady_A          149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNM  228 (963)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhC
Confidence            34456777888889999999999999999988876                       3442    37888888889998


Q ss_pred             C--ChHHHHHHHHhcCCHHHHHHHHhh
Q psy11102         59 G--LCEQAVYVFDKNKHKSSQWLTVVQ   83 (87)
Q Consensus        59 G--~~~~Av~aylk~gd~k~ai~~cv~   83 (87)
                      .  .+.+|.++.++.||+..+.++.-+
T Consensus       229 ~~~dy~~a~~~ai~LnD~~li~~if~~  255 (963)
T 4ady_A          229 PNCDYLTLNKVVVNLNDAGLALQLFKK  255 (963)
T ss_dssp             SSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8  788999999999999988776554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=83.03  E-value=7.1  Score=28.29  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=11.0

Q ss_pred             hHHHHHHHHHh----CCChHHHHHHHHh
Q psy11102         47 LLKPMGEIFVK----YGLCEQAVYVFDK   70 (87)
Q Consensus        47 lL~~ia~~F~~----~G~~~~Av~aylk   70 (87)
                      .+..+|..+..    .+..+.|++.|.+
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  176 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSK  176 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            34444444444    3444455444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=82.64  E-value=2.3  Score=31.07  Aligned_cols=50  Identities=6%  Similarity=-0.060  Sum_probs=29.2

Q ss_pred             HHHHHHHhCC-HHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         21 LISVYTELGD-FEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed-~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ...++..+|. +++-....+.    =|++.......|..+...|..++|+..|.|
T Consensus       137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD  191 (382)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3445556664 6554433333    244456677777777777777777766654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=81.82  E-value=15  Score=27.80  Aligned_cols=81  Identities=12%  Similarity=0.055  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHhc---------cHHHHHHHHHHhCCHHHHHHHHhhCCC-C----CchHHHHHHHHHhCCChHHHHH---
Q psy11102          4 LVSQAREYYEKCH---------CYEKLISVYTELGDFEALESCARKLPD-S----SPLLKPMGEIFVKYGLCEQAVY---   66 (87)
Q Consensus         4 ~w~~A~~yY~~~~---------n~~k~ie~~~~~ed~d~L~~l~~~L~~-~----~~lL~~ia~~F~~~G~~~~Av~---   66 (87)
                      ..+.|.++|..-.         -+.-+|..|.+.|+++.-.++.+.+.+ +    ..-...+-..|.+.|..+.|.+   
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            4556666665321         145677777777777776666665432 1    1223344445555666555544   


Q ss_pred             -------------------HHHhcCCHHHHHHHHhhc
Q psy11102         67 -------------------VFDKNKHKSSQWLTVVQD   84 (87)
Q Consensus        67 -------------------aylk~gd~k~ai~~cv~~   84 (87)
                                         +|.+.|+++.|.++.-++
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence                               445566666666665544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=80.87  E-value=2.6  Score=27.33  Aligned_cols=68  Identities=12%  Similarity=0.107  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHHHhccH------HHHHHHHHHhC----CHHHHHHHHhh-CCCC-CchHHHHHHHHHh----CCChHHHHH
Q psy11102          3 TLVSQAREYYEKCHCY------EKLISVYTELG----DFEALESCARK-LPDS-SPLLKPMGEIFVK----YGLCEQAVY   66 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~------~k~ie~~~~~e----d~d~L~~l~~~-L~~~-~~lL~~ia~~F~~----~G~~~~Av~   66 (87)
                      +++++|.++|.++-+.      -.+..+|.. +    |+++-.+..+. +..+ ......+|.++..    .+..++|++
T Consensus        32 ~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~  110 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAIT  110 (212)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence            4566666666665221      112222222 3    45444433333 2223 3556677777766    667777777


Q ss_pred             HHHhc
Q psy11102         67 VFDKN   71 (87)
Q Consensus        67 aylk~   71 (87)
                      .|.++
T Consensus       111 ~~~~A  115 (212)
T 3rjv_A          111 LLQDA  115 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=80.60  E-value=1.4  Score=33.63  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             chhHHHHHHHHHHhcc----------------HHHHHHHHHHhCCHHHHHHHHh--------hCCCCCchHHH----HHH
Q psy11102          2 TTLVSQAREYYEKCHC----------------YEKLISVYTELGDFEALESCAR--------KLPDSSPLLKP----MGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n----------------~~k~ie~~~~~ed~d~L~~l~~--------~L~~~~~lL~~----ia~   53 (87)
                      .|+|++|..||.++=.                +..+...|...|+|++-+.+.+        .|.++||...+    ++.
T Consensus       364 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  443 (490)
T 3n71_A          364 LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQ  443 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4789999999988643                3467888999999988766543        35677766554    445


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      -....|+.++|-..|-++
T Consensus       444 ~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          444 TEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            556677888888888775

>2vvy_A Protein B15, B14; IKK, IKK beta, BCL-2 family, early protein, HOST-virus interaction, viral protein, immunomodulator, NF-KB activation; 2.69A {Vaccinia virus}

Probab=80.16  E-value=1.7  Score=29.65  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC-CchHHHHHHHHHhCCChHHHHHHHHhcC
Q psy11102          6 SQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDS-SPLLKPMGEIFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus         6 ~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~-~~lL~~ia~~F~~~G~~~~Av~aylk~g   72 (87)
                      ..|..+|   ||+..+..++.. ..+|.+.++++.+... .+.++   +-++-.|+|..+++-.=+-+
T Consensus        79 ~DA~~~F---gni~~lv~~l~l-~g~dn~~~fI~~~~~~~qn~i~---e~~aiIGLcA~vaeyWG~~~  139 (169)
T 2vvy_A           79 DDAELVF---IDIRELVKNMPW-DDVKDCAEIIRCYIPDEQKTIR---EISAIIGLCAYAATYWGGED  139 (169)
T ss_dssp             HHHHHHH---SCHHHHHHHSCT-TCHHHHHHHHHHHSCCSSCCHH---HHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHh---ccHHHHHHHhhh-hhhhhHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHCCCC
Confidence            3577777   999988888877 8899999999986554 44443   56677899999988655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.47
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.33
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.09
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.92
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.77
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.57
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.42
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.19
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.19
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.16
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.08
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.38
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.99
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	92.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	91.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	91.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.1
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	87.24
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	86.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	84.25
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.01

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00026  Score=44.83  Aligned_cols=70  Identities=23%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             chhHHHHHHHHHHhccH-----------------------HHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY-----------------------EKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEI   54 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------------------~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~   54 (87)
                      .++|+.|+++|.++=.+                       ..++.||+++|+|+.-....+..    |.+...+..+|..
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            47899999999877433                       34788999999999887766553    5567889999999


Q ss_pred             HHhCCChHHHHHHHHhc
Q psy11102         55 FVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~   71 (87)
                      +...|.+++|+..|.++
T Consensus       106 ~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1         106 HLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHH
Confidence            99999999999999886

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00063  Score=40.49  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=56.3

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+.+|.++=.        +.....||...|+|++=.+....    -|.+.+.+..+|..+...|..+.|+.+|.
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~   95 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE   95 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHH
Confidence            4789999999998622        55678899999999876655544    25567889999999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        96 ~a   97 (117)
T d1elwa_          96 EG   97 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.13  E-value=0.0013  Score=40.70  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             chhHHHHHHHHHHhcc------------------------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC------------------------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n------------------------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~   53 (87)
                      .++|.+|+..|.++=+                        +..+..||+++++|+.-.+..+..    |.+.+.+-.+|.
T Consensus        30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHH
Confidence            3678888888876542                        223677889999998866655552    556688999999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..++|+.+|.++
T Consensus       110 ~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1         110 ANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.09  E-value=0.002  Score=40.25  Aligned_cols=70  Identities=23%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             chhHHHHHHHHHHhccH-----------------------HHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY-----------------------EKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEI   54 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~-----------------------~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~   54 (87)
                      .++|.+|+.+|.++=++                       ..+..||+.+++|+.-...+...    |.+.+.+-..|..
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            47899999999876542                       23677999999998877666553    5556889999999


Q ss_pred             HHhCCChHHHHHHHHhc
Q psy11102         55 FVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        55 F~~~G~~~~Av~aylk~   71 (87)
                      +...|..+.|.+.|-++
T Consensus       108 ~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1         108 QLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            99999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.95  E-value=0.0022  Score=39.90  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             chhHHHHHHHHHHhccH------------------------HHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHCY------------------------EKLISVYTELGDFEALESCARKL----PDSSPLLKPMGE   53 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~------------------------~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~   53 (87)
                      .++|.+|++.|.++-.+                        ..+..|+.++++|+.-....+..    |.+...+-.+|.
T Consensus        40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            46788888888777322                        22467888899998876665553    444578999999


Q ss_pred             HHHhCCChHHHHHHHHhc
Q psy11102         54 IFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        54 ~F~~~G~~~~Av~aylk~   71 (87)
                      .+...|..+.|++.|.++
T Consensus       120 ~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1         120 GWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            999999999999998765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0017  Score=39.98  Aligned_cols=70  Identities=10%  Similarity=0.014  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .++|++|+.+|.++=.        +..+..||..+|+++.-....+..    |+....+..+|..+...|..++|+++|.
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  102 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3567777777766532        235667777777777665555432    3344677777888888888888877776


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       103 ~a  104 (159)
T d1a17a_         103 TV  104 (159)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.0017  Score=40.17  Aligned_cols=70  Identities=14%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh-C---CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK-L---PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~-L---~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|+|++|+++|.++=.        +..+..||..+|+|+.-....+. |   |.+...+..+|..+...|..+.|+..|-
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4789999999988632        34668899999999877666555 2   3344668889999999999999999987


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus        97 ~a   98 (201)
T d2c2la1          97 RA   98 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.77  E-value=0.0036  Score=44.60  Aligned_cols=39  Identities=26%  Similarity=0.443  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhC
Q psy11102          3 TLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKL   41 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L   41 (87)
                      +.|+.|..+|...+|+++++.|+.++++|+...+.+++.
T Consensus        28 ~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~   66 (336)
T d1b89a_          28 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA   66 (336)
T ss_dssp             -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc
Confidence            456667777777777777777777777777666665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0015  Score=39.37  Aligned_cols=70  Identities=19%  Similarity=0.286  Sum_probs=51.7

Q ss_pred             chhHHHHHHHHHHhccH--------HHHHHHHHHhCCHHHHHHHHhhC-------CCCC----chHHHHHHHHHhCCChH
Q psy11102          2 TTLVSQAREYYEKCHCY--------EKLISVYTELGDFEALESCARKL-------PDSS----PLLKPMGEIFVKYGLCE   62 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n~--------~k~ie~~~~~ed~d~L~~l~~~L-------~~~~----~lL~~ia~~F~~~G~~~   62 (87)
                      .++|++|+++|.++=+.        .....||++.|+|+.=.+..+..       +...    ..+..+|..+...|.++
T Consensus        17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~   96 (128)
T d1elra_          17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK   96 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            47899999999876543        35688999999998766555441       2221    35667899999999999


Q ss_pred             HHHHHHHhc
Q psy11102         63 QAVYVFDKN   71 (87)
Q Consensus        63 ~Av~aylk~   71 (87)
                      +|++.|-++
T Consensus        97 ~A~~~~~ka  105 (128)
T d1elra_          97 DAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0034  Score=41.92  Aligned_cols=63  Identities=10%  Similarity=0.029  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHhcc-------HHHHHHHHHHhCCHHHHHHHHhhCCCC---CchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          3 TLVSQAREYYEKCHC-------YEKLISVYTELGDFEALESCARKLPDS---SPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n-------~~k~ie~~~~~ed~d~L~~l~~~L~~~---~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .+|++|+++|.++||       +++|+++|-+      ..++...+++.   ...+..+|..+.+.|.+++|+++|.++
T Consensus        31 ~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~k------A~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          31 YKFEEAADLCVQAATIYRLRKELNLAGDSFLK------AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHH------HHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            356777776666554       4555555433      33344444432   256888899999999999998887653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.49  E-value=0.0097  Score=36.44  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHhcc--------------------HHHHHHHHHHhCCHHHHHHHHhh-------CCC-C---C----ch
Q psy11102          3 TLVSQAREYYEKCHC--------------------YEKLISVYTELGDFEALESCARK-------LPD-S---S----PL   47 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~-~---~----~l   47 (87)
                      ++|++|++.|.++=.                    +.....||..+|+|+.-.+-.+.       .++ .   .    ..
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a  102 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  102 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence            678999999998843                    33578889999999765543332       122 1   1    24


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHhcC
Q psy11102         48 LKPMGEIFVKYGLCEQAVYVFDKNK   72 (87)
Q Consensus        48 L~~ia~~F~~~G~~~~Av~aylk~g   72 (87)
                      +..+|..+.+.|..++|++.|.++-
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5667899999999999999887643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.0067  Score=38.91  Aligned_cols=54  Identities=13%  Similarity=0.074  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         18 YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        18 ~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ...+++++..+|++++.....+.+    |.+-+....++.-+...|..++|+++|-++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            377899999999999988888775    555688899999999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0076  Score=39.11  Aligned_cols=70  Identities=10%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             chhHHHHHHHHHHhc-----c---HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCH-----C---YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~-----n---~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|+|++|.++|.++=     |   +..+..+|+..|+|++-....+..    |++.+.+..+|..+...|..++|++.|.
T Consensus        12 ~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~   91 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccc
Confidence            467788888877652     1   244567777888887755555442    4455667778888888888888877775


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      +.
T Consensus        92 ~~   93 (388)
T d1w3ba_          92 HA   93 (388)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.012  Score=37.19  Aligned_cols=70  Identities=17%  Similarity=0.073  Sum_probs=50.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|+|++|.++|.++=.        +..+..+|...|+++.-.+..+..    |+.......+|..+...|..+.|.+.|.
T Consensus        50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  129 (259)
T d1xnfa_          50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  129 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            4678888888887643        335677888888888655444432    4455678888888888888888888886


Q ss_pred             hc
Q psy11102         70 KN   71 (87)
Q Consensus        70 k~   71 (87)
                      ++
T Consensus       130 ~a  131 (259)
T d1xnfa_         130 AF  131 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0085  Score=38.86  Aligned_cols=50  Identities=20%  Similarity=0.350  Sum_probs=25.8

Q ss_pred             HHHHHHHhCCHHHHHHHHhh-C---CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         21 LISVYTELGDFEALESCARK-L---PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        21 ~ie~~~~~ed~d~L~~l~~~-L---~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +..++...|++++-.+..+. +   |++...+..+|..+...|..++|++.|.+
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555544443332 1   22334555566666666666666666544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.013  Score=37.30  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHHhcc-----HHHHHHHHHHhCCHHHHHHHHhh---C-CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC-----YEKLISVYTELGDFEALESCARK---L-PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n-----~~k~ie~~~~~ed~d~L~~l~~~---L-~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ++|++|++.|.+..+     +-.+..||+.+|+|++=.+..+.   + |.........|..+...|..++|+..|.|
T Consensus        19 ~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~k   95 (192)
T d1hh8a_          19 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE   95 (192)
T ss_dssp             TCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence            567777777766432     22455667777777765544433   2 33446677777778888877777765543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0039  Score=41.64  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             chhHHHHHHHHHHhcc--------------HHHHHHHHHHhCCHHHHHHHHhh-------CCCC---CchHHHHHHHH-H
Q psy11102          2 TTLVSQAREYYEKCHC--------------YEKLISVYTELGDFEALESCARK-------LPDS---SPLLKPMGEIF-V   56 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------------~~k~ie~~~~~ed~d~L~~l~~~-------L~~~---~~lL~~ia~~F-~   56 (87)
                      .++|++|+++|.++.+              +..+..||...++++.-.+..+.       .+..   ...+..+|..+ .
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            3678888888888766              46778888899999885554443       2221   35677888776 4


Q ss_pred             hCCChHHHHHHHHhc
Q psy11102         57 KYGLCEQAVYVFDKN   71 (87)
Q Consensus        57 ~~G~~~~Av~aylk~   71 (87)
                      ..|..+.|++.|.++
T Consensus       130 ~~~~~~~A~~~~~~A  144 (290)
T d1qqea_         130 DLHDYAKAIDCYELA  144 (290)
T ss_dssp             TTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            579988888888654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.011  Score=38.75  Aligned_cols=68  Identities=16%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhhC----CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          3 TLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~L----~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +++++|..+|.++-.        +-.+..+|...|++++-.+..+..    |.....+..+|..+...|..++|++.|.+
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            566777777766422        234566677777776554444332    33345567777777777777777777755

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.81  E-value=0.042  Score=31.84  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=34.9

Q ss_pred             HHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          8 AREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         8 A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ....|.+.|++++++.++         +++++.=|++...+..+|..+...|..++|+..|.+
T Consensus        22 ~g~~~~~~g~~~~A~~~~---------~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   75 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAF---------EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH   75 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHH---------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHH---------hhhcccccccchhhhhhhhhhhhhhhHHHhhccccc
Confidence            344455556666666443         333444466667777788888888888888877765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.68  E-value=0.017  Score=33.70  Aligned_cols=69  Identities=9%  Similarity=-0.040  Sum_probs=52.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|++++|+..|.++=.        +-.+..++.+.++++.=+...+.    =|++.+.+..+|.-+...|..++|.++|-
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~  108 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  108 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHH
Confidence            4678888888877522        23566778888888765554444    36667889999999999999999999987


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      |
T Consensus       109 ~  109 (112)
T d1hxia_         109 A  109 (112)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.024  Score=34.44  Aligned_cols=48  Identities=10%  Similarity=0.023  Sum_probs=33.5

Q ss_pred             HHHHhCCHHHHHHHHh----hCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         24 VYTELGDFEALESCAR----KLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        24 ~~~~~ed~d~L~~l~~----~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      .|++.|+|++=...-+    .-|.+......+|..+.+.|..+.|++.|.|+
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka   70 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA   70 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHH
Confidence            4555555554333322    23666788999999999999999998877653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.042  Score=35.75  Aligned_cols=69  Identities=19%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMGEIFVKYGLCEQAVYVFD   69 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia~~F~~~G~~~~Av~ayl   69 (87)
                      .|++++|..+|.++=.        +..+..++...|+|+.-......    -|++...+..+|..+...|..++|++.|.
T Consensus        32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            3567777777766511        34556677777877765443332    34555677778888888888888877776


Q ss_pred             h
Q psy11102         70 K   70 (87)
Q Consensus        70 k   70 (87)
                      +
T Consensus       112 ~  112 (323)
T d1fcha_         112 D  112 (323)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.016  Score=34.51  Aligned_cols=54  Identities=9%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      -..|.+.|++++|++||-+.=         +.=|++...+..+|.-+...|.++.|++.|.++
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al---------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAK---------ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH---------HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            345667788888888876532         223566788999999999999999999888653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.062  Score=32.60  Aligned_cols=53  Identities=13%  Similarity=0.066  Sum_probs=37.9

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ..|.+.|++++|++.|-+         .+..-|.+...+..+|..+.+.|.++.|+..|.++
T Consensus        12 n~~~~~g~~~~Ai~~~~k---------al~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGR---------AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHH---------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            344455666666665543         22334677788999999999999999999887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.041  Score=34.82  Aligned_cols=54  Identities=9%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          4 LVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         4 ~w~~A~~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      -|.+++.+ ...|++++++++|-..            .|.+...+-.+|..+...|..+.|+++|.|
T Consensus         8 l~~~g~~~-~~~~d~~~Al~~~~~i------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~k   61 (192)
T d1hh8a_           8 LWNEGVLA-ADKKDWKGALDAFSAV------------QDPHSRICFNIGCMYTILKNMTEAEKAFTR   61 (192)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHTS------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHCCCHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence            35554444 4456677777665321            233567788999999999999999998865

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.13  Score=29.80  Aligned_cols=52  Identities=15%  Similarity=0.083  Sum_probs=36.8

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .-|.+.|++++||++|-..         +..=|++......+|..+...|.++.|++.|.+
T Consensus        11 ~~~~~~g~~~eAi~~~~~a---------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   62 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEA---------IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   62 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHH---------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH---------HhcCCcchhhhhcccccccccccccccchhhhh
Confidence            3344556677777765443         333466678899999999999999999876643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.38  E-value=0.03  Score=39.62  Aligned_cols=42  Identities=10%  Similarity=0.125  Sum_probs=24.1

Q ss_pred             CCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhhcC
Q psy11102         44 SSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDK   85 (87)
Q Consensus        44 ~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~~~   85 (87)
                      ++.-+..+|+...+.|+++.|...|.+.+|++.++.++++++
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~   54 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG   54 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTCHHHHHHHHHTTT
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhc
Confidence            467788999999999999999999999999999999998764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.34  Score=30.09  Aligned_cols=49  Identities=20%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             HHHHHHhCCHHHHH----HHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         22 ISVYTELGDFEALE----SCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        22 ie~~~~~ed~d~L~----~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ..+|...|+|+.-.    +.++-=|++...+..+|..+...|..++|++.|.+
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   96 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS   96 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence            35666677766622    22333355668889999999999999999988754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.39  Score=28.28  Aligned_cols=70  Identities=6%  Similarity=-0.088  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHhcc--------HHHHHHHHHHhCCHH---H-HHHHHhhCCCC-C----chHHHHHHHHHhCCChHHH
Q psy11102          2 TTLVSQAREYYEKCHC--------YEKLISVYTELGDFE---A-LESCARKLPDS-S----PLLKPMGEIFVKYGLCEQA   64 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n--------~~k~ie~~~~~ed~d---~-L~~l~~~L~~~-~----~lL~~ia~~F~~~G~~~~A   64 (87)
                      .++|++|.+.|.++=.        .-..+.|+.+.++.+   + ++-+-+.|..+ .    ..+-.+|.-+.+.|..+.|
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            3688999999998532        124456666544443   3 33333334332 1    2577899999999999999


Q ss_pred             HHHHHhc
Q psy11102         65 VYVFDKN   71 (87)
Q Consensus        65 v~aylk~   71 (87)
                      ++.|-++
T Consensus        92 ~~~~~~a   98 (122)
T d1nzna_          92 LKYVRGL   98 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.57  E-value=0.76  Score=27.32  Aligned_cols=55  Identities=11%  Similarity=0.068  Sum_probs=38.1

Q ss_pred             HHHHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCC---------chHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         10 EYYEKCHCYEKLISVYTELGDFEALESCARKLPDSS---------PLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        10 ~yY~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~---------~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ..+.+.|+++.+|+.|-+      -.++.+++|+..         .....+|.-+.+.|..+.|++.|.+
T Consensus        17 ~~~~~~g~y~~Ai~~y~~------Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRR------AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHH------HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH------HHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            345566788888887655      466777777632         2355688888999999888855433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.31  Score=27.20  Aligned_cols=54  Identities=13%  Similarity=-0.084  Sum_probs=36.2

Q ss_pred             HHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCC----CchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102         12 YEKCHCYEKLISVYTELGDFEALESCARKLPDS----SPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~----~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      |.+.|++.+||+.+      +.-.++...-+..    ...+..+|.-+.+.|..++|+..|.++
T Consensus        15 ~~~~g~y~~A~~~~------~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_          15 AYTEADYYHTELWM------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHTTCHHHHHHHH------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHH------HHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            34456777777643      3333343333321    356888999999999999999999774

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.56  Score=29.17  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         47 LLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        47 lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      .+..+|..+...|..++|+..|.+
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~   76 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQ   76 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455677777777777777777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.1  Score=32.80  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHhccH------------HHHHHHHHHhCCHHHHHHHHhhC-------CC---CCchHHHHHHHHHhCCC
Q psy11102          3 TLVSQAREYYEKCHCY------------EKLISVYTELGDFEALESCARKL-------PD---SSPLLKPMGEIFVKYGL   60 (87)
Q Consensus         3 ~~w~~A~~yY~~~~n~------------~k~ie~~~~~ed~d~L~~l~~~L-------~~---~~~lL~~ia~~F~~~G~   60 (87)
                      +++++|.++|.++-..            .-+..++...|+++.-....+..       +.   ....+..+|..+...|.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  306 (366)
T d1hz4a_         227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR  306 (366)
T ss_dssp             TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence            4566666666654321            12456677777777655544432       22   12456677888888888


Q ss_pred             hHHHHHHHHh
Q psy11102         61 CEQAVYVFDK   70 (87)
Q Consensus        61 ~~~Av~aylk   70 (87)
                      .++|++.|.+
T Consensus       307 ~~~A~~~l~~  316 (366)
T d1hz4a_         307 KSDAQRVLLD  316 (366)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.50  E-value=0.31  Score=27.14  Aligned_cols=51  Identities=12%  Similarity=0.079  Sum_probs=33.4

Q ss_pred             chhHHHHHHHHHHhcc---------------HHHHHHHHHHhCCHHHHHHHHhh----CCCCCchHHHHH
Q psy11102          2 TTLVSQAREYYEKCHC---------------YEKLISVYTELGDFEALESCARK----LPDSSPLLKPMG   52 (87)
Q Consensus         2 ~~~w~~A~~yY~~~~n---------------~~k~ie~~~~~ed~d~L~~l~~~----L~~~~~lL~~ia   52 (87)
                      .++|.+|+++|.++=.               +..+..|+++.|++++-.+.-+.    -|++...+..++
T Consensus        18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_          18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            4788888888888743               23478888888898875555444    244444454443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.24  E-value=0.47  Score=28.54  Aligned_cols=62  Identities=23%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             HHHHHHhccHHHHHHHHHHhCCH-HHHHHHHh-----hC-CCCCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102          9 REYYEKCHCYEKLISVYTELGDF-EALESCAR-----KL-PDSSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus         9 ~~yY~~~~n~~k~ie~~~~~ed~-d~L~~l~~-----~L-~~~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      ...|.+.|++++|+++|.+.=.+ +.......     .+ |.....+..+|..+.+.|..++|++.|.+
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            34455667788888777543111 10000000     00 11223455567777788888888875543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.38  Score=34.25  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHhc------cHHHHHHHHHHhCCHHHHHH----HHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhc
Q psy11102          3 TLVSQAREYYEKCH------CYEKLISVYTELGDFEALES----CARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKN   71 (87)
Q Consensus         3 ~~w~~A~~yY~~~~------n~~k~ie~~~~~ed~d~L~~----l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~   71 (87)
                      ++++.|...|.++-      -+-.+.+++...++|++-..    .++--|++......+|..+...|...+|+..|.|+
T Consensus       134 ~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555555444432      12334445556666665333    23334666678899999999999999999999886

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.25  E-value=0.14  Score=30.90  Aligned_cols=66  Identities=8%  Similarity=0.117  Sum_probs=36.4

Q ss_pred             HHHhccHHHHHHHHHHhCCHHHHHHHHhhCCCCCchHHHHHHHHHhCCChHHHHHHHHhcCCHHHHHHHHhhcCC
Q psy11102         12 YEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHKSSQWLTVVQDKP   86 (87)
Q Consensus        12 Y~~~~n~~k~ie~~~~~ed~d~L~~l~~~L~~~~~lL~~ia~~F~~~G~~~~Av~aylk~gd~k~ai~~cv~~~~   86 (87)
                      |.+-+.+++++++|-+         .+..=|.+...+...|..+...+....+.+..-...+-....+-.++++|
T Consensus         7 ~~r~~~fe~A~~~~e~---------al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P   72 (145)
T d1zu2a1           7 FDRILLFEQIRQDAEN---------TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   72 (145)
T ss_dssp             HHHHHHHHHHHHHHHH---------HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHccHHHHHHHHHH---------HHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            4566666677665533         34444777888999998887655544333333222222222234455555

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.01  E-value=2.6  Score=26.72  Aligned_cols=53  Identities=17%  Similarity=0.257  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhhCCC----CCchHHHHHHHHHhCCChHHHHHHHHh
Q psy11102         18 YEKLISVYTELGDFEALESCARKLPD----SSPLLKPMGEIFVKYGLCEQAVYVFDK   70 (87)
Q Consensus        18 ~~k~ie~~~~~ed~d~L~~l~~~L~~----~~~lL~~ia~~F~~~G~~~~Av~aylk   70 (87)
                      +.+|.+.+...+--|.|+++-+.|-+    +.++|..||.-+.++|.--.|-+...+
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            45566666677888999999888543    248899999999999988888766544