Psyllid ID: psy11135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVLL
Secondary Structure (PSIPRED)
ccEEEEEEEccccccHHHHHHHHHHccccccccccccccEEEEEEEccEEEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccHHHHHHHHHccccccccccccccEEEEEEEEccEEEEEEEEEccccccccccHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
MAEYKLVVVGAGGVGKSALTIQLIQNhfvdeydptiedsyrkqvvIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRvkdaeevpmvlvgnkcdlsTWAVDMNQAQELAEqfnipfiktsaktrmgvdDAFYTLVREIKKDKmlrgkekkkrgisgnklkqccvll
Flexible Loop (DISEMBL)
MAEYKLVVVgaggvgksaLTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKrvkdaeevpMVLVGNKCDLSTWAVDMNQAQELAEQFNIpfiktsaktrmgvDDAFYTLVReikkdkmlrgkekkkrgisgnklkqccvll
Low Complexity Region (SEG)
MAEYKLvvvgaggvgKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVLL
Disordered region (IsUnstruct)
***YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK***************************
Disordered Region (DISOPRED)
*AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR***********************KQCCVLL
Disordered Region (DISEMBL)
MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK************SGNKLKQCCVLL
Disordered Region (DISPRO)
MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
P18262	178	Ras-like protein (Fragmen	N/A	N/A	0.931	1.0	0.826	1e-82
Q295X7	189	Ras-like protein 1 OS=Dro	yes	N/A	0.989	1.0	0.815	1e-79
B4GFJ8	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.815	1e-79
B4PUP5	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79
P83831	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79
B4HKC7	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79
P08646	189	Ras-like protein 1 OS=Dro	yes	N/A	0.989	1.0	0.806	1e-79
P83832	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79
B3NZR4	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79
B3M185	189	Ras-like protein 1 OS=Dro	N/A	N/A	0.989	1.0	0.806	1e-79

>sp|P18262|RAS_ARTSA Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1

 Score =  305 bits (780), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 161/179 (89%), Gaps = 1/179 (0%)

Query: 12  GGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQY 71
           GGVGKSALTIQLIQNHFVDEYDPTIEDSYR+QVVIDGET LLDILDTAGQEEYSAMRDQY
Sbjct: 1   GGVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVIDGETCLLDILDTAGQEEYSAMRDQY 60

Query: 72  MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
           MRTGEGFLLVFAVN+ KSFEDI +YREQIKRVKDAEEVPMVLVGNKCDL T AVDM+QA+
Sbjct: 61  MRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKDAEEVPMVLVGNKCDLPTRAVDMSQAR 120

Query: 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVL 190
           E+A Q+ IPF++TSAKTRMGVDD FYTLVREIKKDKM +G    +RG SG K  +C +L
Sbjct: 121 EVARQYGIPFVETSAKTRMGVDDGFYTLVREIKKDKMKKGN-SSRRGRSGRKQLKCSIL 178

Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.
Artemia salina (taxid: 85549)

>sp|Q295X7|RAS1_DROPS Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 169/190 (88%), Gaps = 1/190 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           +TW V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 TTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKLNKP 180

Query: 181 GNKLKQCCVL 190
             + K C +L
Sbjct: 181 NRRFK-CKIL 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GFJ8|RAS1_DROPE Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 169/190 (88%), Gaps = 1/190 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           +TW V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 TTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKLNKP 180

Query: 181 GNKLKQCCVL 190
             + K C +L
Sbjct: 181 NRRFK-CKIL 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila persimilis (taxid: 7234)

>sp|B4PUP5|RAS1_DROYA Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila yakuba (taxid: 7245)

>sp|P83831|RAS1_DROSI Ras-like protein 1 OS=Drosophila simulans GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila simulans (taxid: 7240)

>sp|B4HKC7|RAS1_DROSE Ras-like protein 1 OS=Drosophila sechellia GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila sechellia (taxid: 7238)

>sp|P08646|RAS1_DROME Ras-like protein 1 OS=Drosophila melanogaster GN=Ras85D PE=1 SV=2

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|P83832|RAS1_DROMA Ras-like protein 1 OS=Drosophila mauritiana GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila mauritiana (taxid: 7226)

>sp|B3NZR4|RAS1_DROER Ras-like protein 1 OS=Drosophila erecta GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila erecta (taxid: 7220)

>sp|B3M185|RAS1_DROAN Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct: 121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query: 181 GNKLKQCCVLL 191
             + K  C +L
Sbjct: 181 NRRFK--CKML 189

May mediate a signal that determines the fate of photoreceptor cells in the developing compound eye. Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
380026367	194	PREDICTED: ras-like protein 1-like [Apis	0.994	0.979	0.840	2e-83
156545968	194	PREDICTED: ras-like protein 1-like [Naso	0.994	0.979	0.835	3e-83
307193744	194	Ras-like protein 1 [Harpegnathos saltato	0.994	0.979	0.840	4e-83
340710326	319	PREDICTED: ras-like protein 1-like [Bomb	0.994	0.595	0.829	9e-83
350423556	319	PREDICTED: ras-like protein 1-like [Bomb	0.994	0.595	0.829	9e-83
328789692	322	PREDICTED: ras-like protein 1-like [Apis	0.979	0.580	0.842	2e-82
170039279	190	ras [Culex quinquefasciatus] gi|16786286	0.994	1.0	0.837	2e-81
157131407	190	ras [Aedes aegypti] gi|108871559|gb|EAT3	0.994	1.0	0.832	4e-81
307187658	188	Ras-like protein 1 [Camponotus floridanu	0.979	0.994	0.832	5e-81
357624403	190	small G protein ras [Danaus plexippus]	0.994	1.0	0.821	5e-81

>gi|380026367|ref|XP_003696923.1| PREDICTED: ras-like protein 1-like [Apis florea]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/194 (84%), Positives = 177/194 (91%), Gaps = 4/194 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             +WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGKEKKKR  
Sbjct: 121 QQSWAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKEHRGKEKKKRMK 180

Query: 180 SGN---KLKQCCVL 190
           +GN   +  +CC+L
Sbjct: 181 TGNANRRKHRCCLL 194

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545968|ref|XP_001606521.1| PREDICTED: ras-like protein 1-like [Nasonia vitripennis]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 177/194 (91%), Gaps = 4/194 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             +WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGKEK+KR  
Sbjct: 121 QQSWAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKEQRGKEKRKRMK 180

Query: 180 SGNKLK---QCCVL 190
           +GN  +   +CC+L
Sbjct: 181 AGNSSRRKHRCCIL 194

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193744|gb|EFN76426.1| Ras-like protein 1 [Harpegnathos saltator]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 163/194 (84%), Positives = 176/194 (90%), Gaps = 4/194 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDI +YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDISTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKR-- 177
              WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK LRGKEKKKR  
Sbjct: 121 QQCWAVNMAQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKELRGKEKKKRNK 180

Query: 178 -GISGNKLKQCCVL 190
            G +G +  +CC+L
Sbjct: 181 VGNAGRRRHRCCLL 194

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710326|ref|XP_003393743.1| PREDICTED: ras-like protein 1-like [Bombus terrestris]

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 161/194 (82%), Positives = 177/194 (91%), Gaps = 4/194 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           + +YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 126 LRKYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 185

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 186 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 245

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             +WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGKEKKKR  
Sbjct: 246 QQSWAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKEHRGKEKKKRMK 305

Query: 180 SGNKLK---QCCVL 190
           +GN  +   +CC+L
Sbjct: 306 TGNSSRRKHRCCLL 319

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423556|ref|XP_003493518.1| PREDICTED: ras-like protein 1-like [Bombus impatiens]

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 161/194 (82%), Positives = 177/194 (91%), Gaps = 4/194 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           + +YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 126 LRKYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 185

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 186 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 245

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             +WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGKEKKKR  
Sbjct: 246 QQSWAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKEHRGKEKKKRMK 305

Query: 180 SGNKLK---QCCVL 190
           +GN  +   +CC+L
Sbjct: 306 TGNSSRRKHRCCLL 319

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789692|ref|XP_394288.4| PREDICTED: ras-like protein 1-like [Apis mellifera]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/191 (84%), Positives = 175/191 (91%), Gaps = 4/191 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQEE
Sbjct: 132 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 191

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
           YSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL  +
Sbjct: 192 YSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLQQS 251

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGN 182
           WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGKEKKKR  +GN
Sbjct: 252 WAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKEHRGKEKKKRMKTGN 311

Query: 183 ---KLKQCCVL 190
              +  +CC+L
Sbjct: 312 ANRRKHRCCLL 322

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039279|ref|XP_001847468.1| ras [Culex quinquefasciatus] gi|167862869|gb|EDS26252.1| ras [Culex quinquefasciatus]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/191 (83%), Positives = 173/191 (90%), Gaps = 1/191 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             WAVDMNQA+++A+Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGK+ KK    
Sbjct: 121 QAWAVDMNQARDVAKQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKE-RGKKNKKHNKL 179

Query: 181 GNKLKQCCVLL 191
           G+  +  C LL
Sbjct: 180 GSSRRFKCRLL 190

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131407|ref|XP_001662234.1| ras [Aedes aegypti] gi|108871559|gb|EAT35784.1| AAEL012071-PA [Aedes aegypti]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 1/191 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             WAVDMNQA+++A+Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGK+ +K    
Sbjct: 121 QAWAVDMNQARDVAKQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKE-RGKKNRKHNKL 179

Query: 181 GNKLKQCCVLL 191
           G+  +  C LL
Sbjct: 180 GSSRRFKCRLL 190

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187658|gb|EFN72630.1| Ras-like protein 1 [Camponotus floridanus]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 4/191 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             +WAV+M QA+E+A Q+ +PF++TSAKTRMGVDDAFYTLVREI+KDK   GK     G 
Sbjct: 121 QQSWAVNMTQAREVARQYGVPFVETSAKTRMGVDDAFYTLVREIRKDKERTGKPP---GS 177

Query: 180 SGNKLKQCCVL 190
           SG+K ++CC+L
Sbjct: 178 SGHKKRRCCIL 188

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624403|gb|EHJ75188.1| small G protein ras [Danaus plexippus]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 171/190 (90%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             WAVDM QA+E+A  + +PF++TSAKTRMGVDDAFYTLVREI+KDK  RGK+ ++    
Sbjct: 121 QAWAVDMTQAREVARSYGVPFVETSAKTRMGVDDAFYTLVREIRKDKESRGKKYRRGTKL 180

Query: 181 GNKLKQCCVL 190
           G++  +C ++
Sbjct: 181 GSRRTKCTLI 190

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
UNIPROTKB|B4GFJ8	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.768	2e-72
UNIPROTKB|Q295X7	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.768	2e-72
FB|FBgn0003205	189	Ras85D "Ras oncogene at 85D" [	0.989	1.0	0.763	4.1e-72
UNIPROTKB|B3M185	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	4.1e-72
UNIPROTKB|B3NZR4	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	4.1e-72
UNIPROTKB|B4LY29	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	4.1e-72
UNIPROTKB|B4PUP5	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	4.1e-72
UNIPROTKB|P83832	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	4.1e-72
UNIPROTKB|B4JFU8	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	6.7e-72
UNIPROTKB|B4NJ72	189	Ras85D "Ras-like protein 1" [D	0.989	1.0	0.763	8.6e-72

UNIPROTKB|B4GFJ8 Ras85D "Ras-like protein 1" [Drosophila persimilis (taxid:7234)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 146/190 (76%), Positives = 160/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             +TW V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 TTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKLNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKIL 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q295X7 Ras85D "Ras-like protein 1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 146/190 (76%), Positives = 160/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             +TW V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 TTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKLNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKIL 189

GO:0016020 "membrane" evidence=ISS

FB|FBgn0003205 Ras85D "Ras oncogene at 85D" [Drosophila melanogaster (taxid:7227)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=IDA

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0008293 "torso signaling pathway" evidence=TAS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=TAS

GO:0019003 "GDP binding" evidence=NAS

GO:0007298 "border follicle cell migration" evidence=IMP;TAS

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0045500 "sevenless signaling pathway" evidence=TAS

GO:0040008 "regulation of growth" evidence=IGI;IMP;TAS

GO:0048749 "compound eye development" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=TAS

GO:0030381 "chorion-containing eggshell pattern formation" evidence=IMP

GO:0001708 "cell fate specification" evidence=TAS

GO:0001558 "regulation of cell growth" evidence=TAS

GO:0016049 "cell growth" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP;NAS

GO:0042066 "perineurial glial growth" evidence=IMP

GO:0035099 "hemocyte migration" evidence=IMP

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP;TAS

GO:0007507 "heart development" evidence=NAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007472 "wing disc morphogenesis" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0007428 "primary branching, open tracheal system" evidence=TAS

GO:0007369 "gastrulation" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0002168 "instar larval development" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0007309 "oocyte axis specification" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006606 "protein import into nucleus" evidence=IGI

GO:0046534 "positive regulation of photoreceptor cell differentiation" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0008361 "regulation of cell size" evidence=IMP

GO:0007552 "metamorphosis" evidence=IMP

GO:0048865 "stem cell fate commitment" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0072002 "Malpighian tubule development" evidence=IMP

GO:0072089 "stem cell proliferation" evidence=IMP

UNIPROTKB|B3M185 Ras85D "Ras-like protein 1" [Drosophila ananassae (taxid:7217)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|B3NZR4 Ras85D "Ras-like protein 1" [Drosophila erecta (taxid:7220)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|B4LY29 Ras85D "Ras-like protein 1" [Drosophila virilis (taxid:7244)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G++ +K    
Sbjct:   121 ASWNVQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRKGRKTNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|B4PUP5 Ras85D "Ras-like protein 1" [Drosophila yakuba (taxid:7245)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P83832 Ras85D "Ras-like protein 1" [Drosophila mauritiana (taxid:7226)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 145/190 (76%), Positives = 161/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             ++W V+  QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G+  +K    
Sbjct:   121 ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRKMNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4JFU8 Ras85D "Ras-like protein 1" [Drosophila grimshawi (taxid:7222)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 145/190 (76%), Positives = 160/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
              +W V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G++ +K    
Sbjct:   121 PSWNVQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRKGRKTNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|B4NJ72 Ras85D "Ras-like protein 1" [Drosophila willistoni (taxid:7260)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 145/190 (76%), Positives = 160/190 (84%)

Query:     1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct:     1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
             QEEYSAMRDQYMRTGEGFLLVFAVNS KSFEDIG+YREQIKRVKDAEEVPMVLVGNKCDL
Sbjct:    61 QEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL 120

Query:   121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
              +W V   QA+E+A+Q+ IP+I+TSAKTRMGVDDAFYTLVREI+KDK  +G++ +K    
Sbjct:   121 PSWNVQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNKGRKGRKLNKP 180

Query:   181 GNKLKQCCVL 190
               + K C +L
Sbjct:   181 NRRFK-CKML 189

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3NZR4	RAS1_DROER	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
P79737	RASN_DANRE	No assigned EC number	0.7650	0.9424	0.9574	no	N/A
Q9YH38	RASK_CYPCA	No assigned EC number	0.8545	0.8638	0.8776	N/A	N/A
P34729	RAS1_PHYPO	No assigned EC number	0.7005	0.8691	0.8783	N/A	N/A
P08556	RASN_MOUSE	No assigned EC number	0.7461	0.9790	0.9894	no	N/A
P32883	RASK_MOUSE	No assigned EC number	0.7643	0.9842	0.9947	no	N/A
P20171	RASH_RAT	No assigned EC number	0.7473	0.9842	0.9947	no	N/A
P05774	RAS_CARAU	No assigned EC number	0.8214	0.8795	0.9180	N/A	N/A
B4HKC7	RAS1_DROSE	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
P51539	RAS1_HYDVU	No assigned EC number	0.6190	0.9790	0.9639	N/A	N/A
Q5RD87	RASN_PONAB	No assigned EC number	0.8214	0.8795	0.8888	no	N/A
P15064	RASG_DICDI	No assigned EC number	0.6649	0.9842	0.9947	yes	N/A
P03967	RASD_DICDI	No assigned EC number	0.6544	0.9738	0.9946	no	N/A
Q2MJK3	RASN_PIG	No assigned EC number	0.8273	0.8795	0.8888	no	N/A
P22278	RAS1_MUCCL	No assigned EC number	0.5909	0.9685	0.9113	N/A	N/A
P08644	RASK_RAT	No assigned EC number	0.7643	0.9842	0.9947	no	N/A
P01117	RASK_MSVKI	No assigned EC number	0.7434	0.9842	0.9947	yes	N/A
P08646	RAS1_DROME	No assigned EC number	0.8062	0.9895	1.0	yes	N/A
P83832	RAS1_DROMA	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
P08642	RASH_CHICK	No assigned EC number	0.7421	0.9842	0.9947	no	N/A
P83831	RAS1_DROSI	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
Q05147	RASK_XENLA	No assigned EC number	0.8383	0.8743	0.8930	N/A	N/A
B4GFJ8	RAS1_DROPE	No assigned EC number	0.8157	0.9895	1.0	N/A	N/A
Q5EFX7	RASK_KRYMA	No assigned EC number	0.8545	0.8638	0.8776	N/A	N/A
P23175	RASH_MSVNS	No assigned EC number	0.7421	0.9842	0.9947	yes	N/A
O42277	RASK_ORYLA	No assigned EC number	0.8666	0.8638	0.8776	N/A	N/A
Q04970	RASN_RAT	No assigned EC number	0.7814	0.9476	0.9576	no	N/A
P22981	LET60_CAEEL	No assigned EC number	0.7210	0.9633	1.0	yes	N/A
P18262	RAS_ARTSA	No assigned EC number	0.8268	0.9319	1.0	N/A	N/A
Q95ME4	RASN_MONDO	No assigned EC number	0.8273	0.8795	0.8888	no	N/A
B4JFU8	RAS1_DROGR	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
B4LY29	RAS1_DROVI	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
P79800	RASK_MELGA	No assigned EC number	0.8502	0.8743	0.8882	yes	N/A
P12825	RASN_CAVPO	No assigned EC number	0.8273	0.8795	0.8888	no	N/A
P34726	RAS2_PHYPO	No assigned EC number	0.7151	0.8586	0.8497	N/A	N/A
Q61411	RASH_MOUSE	No assigned EC number	0.7473	0.9842	0.9947	no	N/A
Q07983	RASK_MONDO	No assigned EC number	0.8443	0.8743	0.8882	yes	N/A
B4NJ72	RAS1_DROWI	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
B4PUP5	RAS1_DROYA	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
Q295X7	RAS1_DROPS	No assigned EC number	0.8157	0.9895	1.0	yes	N/A
B4KB60	RAS1_DROMO	No assigned EC number	0.7905	0.9476	1.0	N/A	N/A
P01113	RASH_MSVMO	No assigned EC number	0.7473	0.9842	0.9947	yes	N/A
P01112	RASH_HUMAN	No assigned EC number	0.7473	0.9842	0.9947	no	N/A
P01111	RASN_HUMAN	No assigned EC number	0.8273	0.8795	0.8888	no	N/A
B3M185	RAS1_DROAN	No assigned EC number	0.8062	0.9895	1.0	N/A	N/A
P01116	RASK_HUMAN	No assigned EC number	0.7591	0.9842	0.9947	no	N/A
P01115	RASH_MSVHA	No assigned EC number	0.7368	0.9842	0.7800	yes	N/A
P01114	RASH_RRASV	No assigned EC number	0.7421	0.9842	0.7580	yes	N/A
Q5F352	RASN_CHICK	No assigned EC number	0.7868	0.9476	0.9576	no	N/A
Q91806	RASN_XENLA	No assigned EC number	0.7888	0.9319	0.9417	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-117
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-106
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-105
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-94
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-89
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-84
pfam00071	162	pfam00071, Ras, Ras family	7e-80
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-77
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	8e-73
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-71
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-68
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	7e-68
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-66
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-63
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-51
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-49
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-46
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-45
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-39
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-38
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-38
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-37
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-34
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-34
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-34
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-34
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-33
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-33
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-33
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-31
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-31
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	6e-31
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-30
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-30
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-30
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-28
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-28
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-28
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-27
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-25
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-24
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-24
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-24
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-24
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-23
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-23
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-23
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-23
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	7e-23
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-22
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-22
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-22
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-21
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-21
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-21
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-21
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	8e-21
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-20
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-20
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	7e-20
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	8e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-19
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-19
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-18
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-18
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-18
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-17
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-16
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-16
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-14
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-13
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-12
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	3e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-08
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	4e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-08
cd00880	161	cd00880, Era_like, E	2e-07
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	5e-07
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-05
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-05
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	7e-05
cd01887	169	cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk	1e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	3e-04
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	4e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	5e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	7e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	8e-04
cd01878	204	cd01878, HflX, HflX GTPase family	8e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	9e-04
TIGR03156	351	TIGR03156, GTP_HflX, GTP-binding protein HflX	9e-04
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.001
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	0.002
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	0.003
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	0.003
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	0.004

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  328 bits (844), Expect = e-117
 Identities = 134/162 (82%), Positives = 148/162 (91%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQE
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           EYSAMRDQYMRTGEGFL VFA+NS KSFEDI +YREQIKRVKD+++VPMVLVGNKCDL+ 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
             V   Q Q+LA+ + IP+I+TSAKTR GV++AFYTLVREI+
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  301 bits (772), Expect = e-106
 Identities = 115/164 (70%), Positives = 136/164 (82%), Gaps = 1/164 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYKLVV+G GGVGKSALTIQ +Q HFVDEYDPTIEDSYRKQ+ IDGE  LLDILDTAGQE
Sbjct: 2   EYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E+SAMRDQYMRTGEGFLLV+++   +SFE+I  +REQI RVKD ++VP+VLVGNKCDL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   + +ELA Q+  PF++TSAK R+ VD+AFY LVREI+K
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  298 bits (766), Expect = e-105
 Identities = 114/163 (69%), Positives = 137/163 (84%), Gaps = 1/163 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           YKLVV+G+GGVGKSALTIQ IQ HFVD+YDPTIEDSYRKQ+ IDGE  LLDILDTAGQEE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           +SAMRDQYMRTGEGFLLV+++   +SFE+I  +REQI RVKD ++VP+VLVGNKCDL + 
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 124 -AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V   + +ELA Q+  PF++TSAK R+ VD+AFY LVREI+K
Sbjct: 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  271 bits (695), Expect = 4e-94
 Identities = 128/183 (69%), Positives = 146/183 (79%), Gaps = 4/183 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
             EYKLVVVG GGVGKSALTIQ IQNHF+DEYDPTIEDSYRKQ VID ET LLDILDTAG
Sbjct: 3   STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAG 62

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTG+GFL V+++ S  SFE+I S+REQI RVKD + VPM+LVGNKCDL
Sbjct: 63  QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD---KMLRGKEKKK 176
            S   V   + QELA+ F IPF++TSAK R+ VD+AFY LVREI+K     M   K+KKK
Sbjct: 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQKKK 182

Query: 177 RGI 179
            G+
Sbjct: 183 GGL 185

Length = 189

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  259 bits (664), Expect = 1e-89
 Identities = 104/160 (65%), Positives = 131/160 (81%), Gaps = 1/160 (0%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KLVV+GAGGVGKSALTI+ +   FV+EYDPTIEDSYRKQ+V+DGET  LDILDTAGQEE+
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
           SAMRDQY+R G+GF+LV+++ S +SFE+I + REQI RVKD E+VP+VLVGNKCDL    
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENER 120

Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
            V   + + LAE++  PF++TSAKT + +D+ F TLVREI
Sbjct: 121 QVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  244 bits (625), Expect = 8e-84
 Identities = 107/162 (66%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           YKLVVVG GGVGKSALTIQ IQ++FV +YDPTIEDSY KQ  IDG+ A LDILDTAGQEE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
           +SAMR+QYMRTGEGFLLVF+V    SFE++  +  QI RVKD +E PM+LVGNK DL   
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
             V   + QELA Q  IP+I+TSAK R+ VD AF+ LVR I+
Sbjct: 123 RQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  234 bits (599), Expect = 7e-80
 Identities = 82/163 (50%), Positives = 108/163 (66%), Gaps = 3/163 (1%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEE 63
           KLV+VG GGVGKS+L I+  QN F +EY PTI  D Y K + +DG+T  L I DTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           + A+R  Y R  +GFLLV+ + S  SFE++  + E+I R  D E VP+VLVGNKCDL   
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPIVLVGNKCDLEDQ 119

Query: 124 -AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V   + + LA++  +PF++TSAKT   V++AF  L REI K
Sbjct: 120 RVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  228 bits (582), Expect = 3e-77
 Identities = 91/163 (55%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           +K+++VG+GGVGKSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   L+ILDTAGQE+
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           Y+A+RD Y R+GEGFLLVF++  M+SF  +  +REQI RVK+ + VP++LVGNKCDL   
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDK 120

Query: 124 A-VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V + +A  LAEQ+ + +++TSAKTR  VD  F+ LVREI++
Sbjct: 121 RQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  217 bits (555), Expect = 8e-73
 Identities = 99/190 (52%), Positives = 135/190 (71%), Gaps = 3/190 (1%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KLVV+G GGVGK+ALTIQL  NHFV+ YDPTIEDSYRKQVV+DG+  +L++LDTAGQEEY
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST 122
           +A+RDQ++R GEGF+LV+++ S  +FE +  +REQI+RVKD  A +VP+++VGNKCD   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120

Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              V   +   LA +    FI+ SAKT + V+ AFYTLVR +++ +      K       
Sbjct: 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKK 180

Query: 182 NKLKQCCVLL 191
            K K+ CV++
Sbjct: 181 EKKKRKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  212 bits (541), Expect = 4e-71
 Identities = 94/164 (57%), Positives = 127/164 (77%), Gaps = 1/164 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYKLVV+G+GGVGKSALT+Q +Q  FV++YDPTIEDSYRKQV +DG+  +L+ILDTAG E
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
           +++AMRD YM+ G+GF+LV+++ +  +F D+   REQI RVKD E+VPM+LVGNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   Q Q LA Q+   F++TSAK ++ V++ FY LVR+I +
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  205 bits (522), Expect = 4e-68
 Identities = 90/163 (55%), Positives = 122/163 (74%), Gaps = 2/163 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +YK+VV+GAGGVGKSALT+Q +QN F++ YDPTIEDSYRKQV IDG    L+ILDTAG E
Sbjct: 1   DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
           +++AMR+ Y+++G+GFLLV++V S  S  ++G  REQ+ R+KD++ VPMVLVGNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
              V       L++Q+  +PF +TSA+ R  VD+ F  LVR+I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  204 bits (521), Expect = 7e-68
 Identities = 90/167 (53%), Positives = 122/167 (73%), Gaps = 1/167 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYK+V++GAGGVGKSA+T+Q I + F D +DPTIED+Y+ Q  ID E ALLDILDTAGQ 
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQA 61

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
           E++AMRDQYMR GEGF++ ++V    SF++   ++E I RV+  E++P+VLVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
              V   + + LA +FN PF +TSA  R  +DDAF+ LVREI++ + 
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKES 168

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  200 bits (511), Expect = 2e-66
 Identities = 95/163 (58%), Positives = 128/163 (78%), Gaps = 2/163 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYKLVV+G+GGVGKSALT+Q +Q  FVD+YDPTIEDSYRKQ+ +D +  +L+ILDTAG E
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
           +++AMRD Y++ G+GF LV+++ + +SF D+   REQI RVKD E+VPM+LVGNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 122 TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   + Q LA Q+ N PF++TSAK+++ VD+ FY LVR+I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  192 bits (490), Expect = 3e-63
 Identities = 77/162 (47%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYK+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   ++L+ILDTAG E
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           ++++MRD Y++ G+GF++V+++ + ++F+DI   R+QI RVK  E+VP++LVGNK DL +
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   + + LAE++  PF++TSAK++  V++ F  +VR++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  162 bits (413), Expect = 1e-51
 Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGK++L ++ + N F + Y  TI  D   K + +DG+   L I DTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            + ++   Y R   G +LV+ V + +SFE++  +  ++K       +P++LVGNK DL  
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP-PNIPIILVGNKSDLED 119

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
              V   +AQ+ A++  + F +TSAKT   VD+AF +L R
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  157 bits (399), Expect = 4e-49
 Identities = 67/162 (41%), Positives = 105/162 (64%), Gaps = 1/162 (0%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+ V+G+  VGKS+LT+Q ++ HFV+ Y PTIE+++ K +   G+   L+I+DTAGQ+EY
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
           S +  +Y     G++LV++V S KSFE +    ++I  +   E VP+VLVGNK DL    
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMER 122

Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V   + ++LAE +   F+++SAK    V++AF  L+ EI+K
Sbjct: 123 QVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEK 164

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  149 bits (379), Expect = 2e-46
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVV-IDGETALLDILDTAG 60
           E K+V+VG   VGKS L  +L+ N   + EY P    +Y   V+  DG+T   ++LDTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFA-VNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKC 118
           QE+Y A+R  Y R  E  L VF  V  +   E+I     ++I    ++  VP++LVGNK 
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-GVPIILVGNKI 119

Query: 119 DLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
           DL    +  + A   A+    P I  SA+T   +D AF  +  
Sbjct: 120 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  145 bits (369), Expect = 8e-45
 Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K++++G  GVGKS+L  +     F ++Y  TI   ++ K + +DG+   L I DTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + + +SFE++ ++ ++++       V ++LVGNK DL  
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS-PNVVIMLVGNKSDLEE 119

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   +A+  AE+  +PF +TSAKT   V++AF  L REI K
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  132 bits (334), Expect = 1e-39
 Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL  
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTD 121

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
              VD  +A+E A++  IPF++TSAK    V++AF T+ REIKK 
Sbjct: 122 KKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  129 bits (326), Expect = 2e-38
 Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 5/166 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+ V+GA GVGKSALT++ +   F+ EY+P +E  Y +QV IDGE   L+I DT GQ++ 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 65  SA--MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
                 ++ +R  +GF+LV+++    SF+ +    + I+ +K    E+P++LVGNK DL 
Sbjct: 61  EDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLL 120

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSA-KTRMGVDDAFYTLVREIKK 165
               V   + Q+LA +    F + SA +  + V + F+ L RE+++
Sbjct: 121 HSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score =  131 bits (331), Expect = 3e-38
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 10/166 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           Y++VV+GA  VGK+A+  + +   F ++Y PTIED +RK   I GE   LDILDT+G   
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--------KRVKDAEEVPMVLVG 115
           + AMR   + TG+ F+LVF++++ +SFE++   REQI         + K+  ++PMV+ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 116 NKCDLSTW-AVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAFYTL 159
           NK D      V  ++ ++L     N  + + SAK    +D+ F  L
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  126 bits (318), Expect = 3e-37
 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 3/161 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y++VV GAGGVGKS+L ++ ++  F + Y PTIED+YR+ +        L I DT G  
Sbjct: 1   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSH 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDL 120
           ++ AM+   +  G  F+LV+++ S +S E++    E I  +K  + E++P++LVGNKCD 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
           S    V  ++   LA  +N  F++TSAKT   V + F  L+
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  120 bits (302), Expect = 1e-34
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++  ++ F   +  TI   ++ + + +DG+   L I DTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
            +  +   Y R   G +LV+ +   KSFE+I ++   I     +E+V  +LVGNKCD+  
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHA-SEDVERMLVGNKCDMEE 122

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   + + LA ++ I F++TSAK  + V++AF TL ++I K
Sbjct: 123 KRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  119 bits (302), Expect = 1e-34
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 20/173 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG G VGK+ L I    N F  EY PT+ D+Y   V +DG+   L + DTAGQEEY
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEY 61

Query: 65  SAMRD-QYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGNKCDL- 120
             +R   Y +T + FLL F+V+S  SFE++ +  Y E IK       VP++LVG K DL 
Sbjct: 62  DRLRPLSYPQT-DVFLLCFSVDSPSSFENVKTKWYPE-IK--HYCPNVPIILVGTKIDLR 117

Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
                          +   + ++LA++   + +++ SA T+ G+ + F   +R
Sbjct: 118 DDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  118 bits (297), Expect = 4e-34
 Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            K++++G  GVGKS+L ++   + F ++   TI   ++ K V +DG+   L I DTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R  +G +LV+ V    +F+++ ++  ++       +   +LVGNK D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
             V   + Q+ A + N+ FI+TSAKTR+GV  AF  LV +I
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  118 bits (297), Expect = 5e-34
 Identities = 53/162 (32%), Positives = 99/162 (61%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQE 62
           +K+V++G G VGK++L ++ ++N F ++++ T + S ++K V I G+   L I DTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            Y A+   Y R  +G +LV+ +    SF+ +  + +++K+++    + +V+VGNK DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDLER 119

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V  ++A+E A+       +TSAKT  G+++ F +L + +
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score =  117 bits (294), Expect = 3e-33
 Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           +LV +GA GVGK+AL  + + + F  ++  T+E+ + K+  + G    +DILDT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LSTW 123
            AMR   ++ G+ F LV++V+  +SFE++   RE+I  VK+ + VP+V+VGNK D L+  
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAER 120

Query: 124 AVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
            V+   A    E  +N  F++ SAK    V + F  L+++  
Sbjct: 121 QVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQAN 162

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  115 bits (291), Expect = 3e-33
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETALLDILDTAGQ 61
           +K+V++G  GVGKS L  +  +N F  +   TI  E + R  + IDG+T    I DTAGQ
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATR-TIQIDGKTIKAQIWDTAGQ 62

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
           E Y A+   Y R   G LLV+ +    +FE++  + ++++   D+  + ++LVGNK DL 
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADS-NIVIMLVGNKSDLR 121

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              AV   +A+  AE+  + FI+TSA     V++AF  L+ EI
Sbjct: 122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  116 bits (292), Expect = 9e-33
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 27/217 (12%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTA 59
           M E+K+VV+G GGVGK+ L  +L+ + F + Y PTI +    + +        L + DTA
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQEEY ++R +Y R   G L+V+     +S +++     +  R    ++VP++LVGNK D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 120 LSTW----AVDMNQ------------AQELAEQFNIPFIKTSAK--TRMGVDDAFYTLVR 161
           L          +NQ               L E  N   ++TSAK  T   V++ F  L+R
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 162 EI--KKDKMLRGKEKKKRGISGN------KLKQCCVL 190
           ++  + +K++   E ++     N           CVL
Sbjct: 183 KLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCVL 219

Length = 219

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  111 bits (279), Expect = 2e-31
 Identities = 53/163 (32%), Positives = 94/163 (57%), Gaps = 3/163 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQ 61
           ++KLV++G   VGKS++ ++ ++N F +  + TI  ++  + V +D  T   +I DTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
           E Y ++   Y R     ++V+ + S +SFE   S+ ++++       V + L GNK DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIV-IALAGNKADLE 119

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           S   V   +AQE A++  + F++TSAKT   V++ F  + R++
Sbjct: 120 SKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  112 bits (283), Expect = 2e-31
 Identities = 60/182 (32%), Positives = 104/182 (57%), Gaps = 4/182 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQN-HFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           Y++V++G  GVGKS+L        +    Y+ + +D+Y + V +DGE A L + D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
           +   + D  M+ G+ +++V++V    SFE     R Q++R + AE++P++LVGNK DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
           +  V + + +  A  F+  FI+TSA  +  VD+ F  +VR+++  +    KEK  R ++ 
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRR--DSKEKNTRRMAS 178

Query: 182 NK 183
            K
Sbjct: 179 RK 180

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  110 bits (277), Expect = 6e-31
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 6/164 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V +D     L I DTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK---RVKDAEEVPMVLVGNKCD 119
            + ++   + R  +  +LV+ V + KSFE + S+R++       +D E  P V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 120 LSTW-AVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAFYTLVR 161
           L     V   +AQ+  + + NIP+ +TSAK  + VD AF T+ R
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  109 bits (275), Expect = 2e-30
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 31/207 (14%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQ 61
           + K+VVVG GG GK+ L +   Q  F +EY PT+ ++Y   + + +G+   L + DTAGQ
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ 62

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK---RVKD-AEEVPMVLVGNK 117
           E+Y  +R       +  L+ ++V++  S +++     + K    V       P+VLVG K
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNV-----EDKWYPEVNHFCPGTPIVLVGLK 117

Query: 118 CDLS-------------TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
            DL                 V   Q + +A+    + +I+ SAK    VD+ F   +   
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVA 177

Query: 164 KKDKMLRGKEKKKRGISGNKLKQCCVL 190
                   ++KKK+       K+C +L
Sbjct: 178 LSKSGRAARKKKKK-------KKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  108 bits (270), Expect = 5e-30
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEE 63
           K++++G GGVGKS+L  + + N F  +   TI   +  K + +DG    L I DTAGQE 
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDL 120
           + ++R  + R  +  LL F+V+  +SF+++ +++++      VK+ E  P V++GNK D+
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 126

Query: 121 STWAVDMNQAQE-LAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               V   +AQ    +  + P+ +TSAK    V  AF   VR +
Sbjct: 127 PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  107 bits (268), Expect = 8e-30
 Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 7   VVVGAGGVGKSALTIQLIQNHFV---DEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           VVVG GGVGKS+L   L+        D    T   D Y K++        L ++DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVK--LVLVDTPGLD 58

Query: 63  EYSAMRD-----QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117
           E+  +         +R  +  LLV      +S ED    +  I R    E +P++LVGNK
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA---KLLILRRLRKEGIPIILVGNK 115

Query: 118 CDL--STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
            DL       ++ + +ELA+   +P  + SAKT  GVD+ F  L+ 
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  104 bits (260), Expect = 2e-28
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 6/167 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K++V+G   VGK+ LT +     F +  + TI   +R + V IDGE   + + DTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 63  EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
            +  +M   Y R     + V+ V +M SF  + S+ E+ ++     EVP +LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAK---TRMGVDDAFYTLVREIK 164
               V  + AQ  A+  ++P  +TSAK       V+  F TL  ++K
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  104 bits (260), Expect = 2e-28
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 6/156 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVID--GETALLDILDTAGQ 61
           K++VVG G VGKS++  + ++  F  +Y  TI  D   KQ+ +    E   L + DTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           EE+ A+   Y R  +  +LVF+    +SFE I S++E+++      ++PMVLV  K DL 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLL 119

Query: 122 TWAVDMNQ-AQELAEQFNIPFIKTSAKTRMGVDDAF 156
             AV  N+ A+ LA++  +P  +TS K    V + F
Sbjct: 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  103 bits (259), Expect = 2e-28
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 7/157 (4%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +KLV +G   VGK+++  + + + F ++Y  TI  D   K + +D +T  L + DTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAE--EVPMVLVGNKCDL 120
            + ++   Y+R     ++V+ + + +SF++     + I  V+D    +V +VLVGNK DL
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNT---DKWIDDVRDERGNDVIIVLVGNKTDL 117

Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           S    V   + ++ A++ N  FI+TSAK    V   F
Sbjct: 118 SDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  103 bits (258), Expect = 4e-28
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 19/172 (11%)

Query: 6   LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS 65
           LVVVG G VGK+ L I    N F ++Y PT+ ++Y   V +DG+   L + DTAGQE+Y 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 66  AMRD-QYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTW 123
            +R   Y  T + FL+ F+V+S  SFE++   +  ++K       VP++LVG K DL   
Sbjct: 61  RLRPLSYPDT-DVFLICFSVDSPASFENVKEKWYPEVK--HFCPNVPIILVGTKLDLRND 117

Query: 124 AVDMN-------------QAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
              +              Q Q LA++   + +++ SA T+ GV + F   +R
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIR 169

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  100 bits (251), Expect = 7e-27
 Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 11/194 (5%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS+L ++   N F   Y  TI   ++ + V I+GE   L I DTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC-DLS 121
            +  +   Y R   G ++V+ V + +SF ++  + ++I+  ++ ++V  VLVGNK  D  
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE--QNCDDVCKVLVGNKNDDPE 124

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI---KKDKMLRGKEKKKRG 178
              V+   A + A Q  I   +TSAK  + V++ F  +   +   KKD + + +++++  
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQND 184

Query: 179 I----SGNKLKQCC 188
           +      +K K+ C
Sbjct: 185 VVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 98.6 bits (246), Expect = 2e-26
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K +++G  GVGKS L +Q     F   +D TI   +  +++ IDG+   L I DTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            + ++   Y R   G LLV+ +   ++F  + S+ E  ++  ++    M L+GNKCDL S
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIM-LIGNKCDLES 123

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   + +  A +  + F++TSAKT   V++AF    +EI  
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 96.8 bits (241), Expect = 1e-25
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVID----------GETALL 53
           KL+ +G  GVGK+    +   N F  ++  T+   +R K+VV +               L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 54  DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVL 113
            + DTAGQE + ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +VL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 114 VGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +GNK DL     V   QA+ELA+++ IP+ +TSA T   V+ A  TL+  I K
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQE 62
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
            + ++   Y R   G LLV+ +   ++F  + S+ E  ++  +A    M L+GNKCDL+ 
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAH 125

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             AV   + ++ A++  + F++ SAKT   V++AF     +I K
Sbjct: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169

Length = 210

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 93.4 bits (232), Expect = 3e-24
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 15/170 (8%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDL--- 120
           + +R    R  + FLL F++ S  S+E++   +  +++    A  VP+VLVG K DL   
Sbjct: 63  NRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHY--APGVPIVLVGTKLDLRDD 120

Query: 121 --------STWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVR 161
                       +   Q +EL +Q     +I+ S+KT+  V   F   ++
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 93.5 bits (232), Expect = 4e-24
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 15/177 (8%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M   K VVVG G VGK+ L I    N F  EY PT+ D+Y  Q  +DG T  L++ DTAG
Sbjct: 1   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEY  +R         F++ F++ S  S+E++  ++   +       VP++LVG K DL
Sbjct: 61  QEEYDRLRTLSYPQTNVFIICFSIASPSSYENV-RHKWHPEVCHHCPNVPILLVGTKKDL 119

Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
                            +   Q   LA+Q + + +++ SA  + GV + F   VR +
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 92.6 bits (230), Expect = 8e-24
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 4/175 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVV-IDGETALLDILDTAGQ 61
           +K+++VG  GVGK+ L ++     F+   +  T+   +  +VV +DG    L I DTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E + ++   Y R     LL++ V +  SF++I ++  +I       +V ++L+GNK D+S
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYA-QSDVVIMLLGNKADMS 119

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
               V     + LA+++ +PF++TSAKT + V+ AF  + +E+K   + +  E K
Sbjct: 120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPK 174

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 91.0 bits (226), Expect = 2e-23
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K++++G   VGK+ +  +     F +    TI  D   K + I G+   L I DTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R+  G ++ + +    SFE +  + E++++   A  V ++L+GNKCDL  
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEE 122

Query: 123 W-AVDMNQAQELAEQFNIPF-IKTSAKTRMGVDDAFYTLVREI 163
              V   +A  LAE + I   ++TSAK    V++AF  +  E+
Sbjct: 123 QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 91.9 bits (228), Expect = 2e-23
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 19/203 (9%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y A+   Y R   G LLV+ +   ++F+++  +  +++   D+  V M + GNK DL+ 
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM-MAGNKSDLNH 131

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK---DKMLRGKEKKKRG 178
             +V     Q LAE+  + F++TSA     V+ AF T++ EI      K L  +E     
Sbjct: 132 LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANS 191

Query: 179 -------------ISGNKLKQCC 188
                         SGN  + CC
Sbjct: 192 GLPGQGTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++ ++G+   L I DTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            + A+   Y R   G L+V+ +    ++  + S+    + + +   V + L+GNK DL +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEA 121

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   +A++ A++  + F++ SAKT   V+DAF    ++I
Sbjct: 122 QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 89.8 bits (223), Expect = 4e-23
 Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K +++G+ G GKS L  Q I+N F  + + TI   +  +VV + G++  L I DTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + S +SF  + ++    + +  + ++ ++LVGNK DL  
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLA-SPDIVIILVGNKKDLED 119

Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   +A   A++  + F++TSA T   V++AF    R I
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 90.4 bits (225), Expect = 7e-23
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETAL-LDILDTAGQ 61
           +K++V+G  GVGK+++  + +   F   Y  TI  D   K +  D  T + L + D AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI-KRVK--DAEEVPMVLVGNKC 118
           E +  M   Y +   G ++VF V    +FE +  ++  +  +V   + E +P +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 119 DLS--TWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
           DL     A D  Q  +  ++     + +TSAK  + +++A   LV+ I K      +  +
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILK-NDKGLQSPE 179

Query: 176 KRGISGNKLKQ 186
               +   LKQ
Sbjct: 180 PDEDNVIDLKQ 190

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 89.1 bits (221), Expect = 1e-22
 Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 8/134 (5%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K VVVG G VGK+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62

Query: 65  SAMRD-QYMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST 122
             +R   Y +T   FL+ F++ S  SFE++   +  +++        P++LVG K DL  
Sbjct: 63  DRLRPLSYPQTDV-FLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRD 119

Query: 123 WAVDMNQAQELAEQ 136
              D +  ++L E+
Sbjct: 120 ---DKDTIEKLKEK 130

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 87.6 bits (217), Expect = 4e-22
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 5   KLVVVGAGGVGKSALTIQLIQN---HFVDEYDPTIE-DSYRKQVVI--DGETALLDILDT 58
           +  VVG   VGKSAL +Q+  +    F   Y  T   D   K V +    ++  L I D+
Sbjct: 2   QCAVVGDPAVGKSAL-VQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 59  AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
           AGQE +S M +          +V+ V +  SF +   +  +++        P VLVGNKC
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 119 DLSTWA-VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
           DL+    VD  QAQ LA+   + F +TSAK  +G +  F +L R
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 88.3 bits (219), Expect = 5e-22
 Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETALLDILDTAG 60
           +++L+V+G   VGKS+L  +  +  F +  DPT+  D + + + I  G    L + DTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE + ++   Y R   G LLVF + + +SFE +  + E+ +          +LVG+KCDL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
            S   V   +A++LA+   + +I+TSA+T   V++AF  L +EI
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 86.3 bits (214), Expect = 1e-21
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEE 63
           K++ +G  GVGKS +  +  +  FV +Y PTI   Y  K+V +  +   ++  D +G  E
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK----RVKDAEEVPMVLVGNKCD 119
           Y  +R+++ +  +G LLV+ V   +SFE + S+ +++K       + E + +V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           L+   AV  ++ +  AE     + +TSA T  GV++ F TL   I
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 17/167 (10%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K V+VG G VGK++L +    N +  EY PT  D++   V++DG+   L + DTAGQ+E+
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
             +R       + FLL F+V +  SF++I   +  +I+  K   + P++LVG + DL   
Sbjct: 62  DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIR--KHNPKAPIILVGTQADLRTD 119

Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
                         V  ++A+ LAE+     +I+ SA T+  + + F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 86.4 bits (214), Expect = 3e-21
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETA-LLDILDTAGQ 61
            K+VV+G G  GK++L  +  Q  F   Y  TI  D + +++ + G     L + D  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP--MVLVGNKCD 119
           +    M D+Y+   +   LV+ + + +SFE++  +   +K+V +  E    MVLVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           L     V   +    A++ ++  I  SAKT   V   F  +  E+
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 84.6 bits (209), Expect = 5e-21
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           ++L+++G  GVGK+ L  +   N F   +  TI   ++ K + +DG    + I DTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            Y  +  QY R  +G  LV+ ++S +S++ I  +   +      E V  +L+GNK D   
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP-EGVQKILIGNKADEEQ 119

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159
              V   Q  +LA+++ + F +TSA T   + ++F  L
Sbjct: 120 KRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 85.1 bits (210), Expect = 8e-21
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 13/197 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K++++G  GVGKS+L +  I +  V++  PTI   ++ KQ+ + G+   L I DTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL- 120
            +  +   Y R  +G +LV+ V   ++F ++   + ++++     ++   +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML--RGKEKKKRG 178
           S   V   +   LA++    F++ SAKTR  V+  F  L  +I +   L   G    KR 
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRN 193

Query: 179 ISGNKLKQ-------CC 188
           I   K +        CC
Sbjct: 194 ILKQKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 84.5 bits (209), Expect = 8e-21
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 27/176 (15%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KLV+VG G  GK++L        F +EY PT+ ++Y     +DG+   L + DTAGQEEY
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-------PMVLVGNK 117
             +R          L+ FA+++  S E++        R K  EEV       P++LVG K
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENV--------RTKWIEEVRRYCPNVPVILVGLK 114

Query: 118 CDLSTWA-----------VDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTLVR 161
            DL   A           V + QA+ +A       +++ SA T  GVDD F    R
Sbjct: 115 KDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 83.4 bits (206), Expect = 1e-20
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQE 62
           +KL+++G   VGK++   +   + F   +  T+   ++ + V   +  + L I DTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            Y  +   Y R   GF+L++ + + +SF  +  +  QIK     +   ++LVGNKCD+  
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMED 120

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
              V   + ++LA+Q    F + SAK  + V   F  LV
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 19/173 (10%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQ-IKRVKD-AEEVPMVLVGNKCDL-- 120
             +R       +  L+ F+++S  S E+I    E+    VK     VP++LVGNK DL  
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENI---PEKWTPEVKHFCPNVPIILVGNKKDLRN 119

Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
                          V   + + +AE+     +++ SAKT+ GV + F    R
Sbjct: 120 DEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 81.8 bits (202), Expect = 7e-20
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 19/168 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K VVVG G VGK+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQ-IKRVK-DAEEVPMVLVGNKCDL-- 120
             +R       + FL+ F+V S  SFE++   +E+ +  +     + P +LVG + DL  
Sbjct: 63  DRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKTPFLLVGTQIDLRD 119

Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
                          +     ++LA     + +++ SA T+ G+ + F
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 82.8 bits (205), Expect = 8e-20
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + E+KL++VG GGVGK+    + +   F  +Y PT+           +      ++ DTA
Sbjct: 7   VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE++  +RD Y   G+  +++F V S  +++++ ++   I RV   E +P+VLVGNK D
Sbjct: 67  GQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVD 124

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           +    V   Q      + N+ +   SAK+    +  F  L R +  D  L
Sbjct: 125 VKDRQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173

Length = 215

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEE 63
           K+VV+G  G GKS+L  QL+   F  E      D+     + +DG+T LL+I D  G+EE
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAE-EVPMVLVGNKC 118
                  +M+  +  LLV+ +   +S  ++      +  ++    ++P++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 80.3 bits (198), Expect = 5e-19
 Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILD----- 57
            ++ V+GA GVGK+A+  Q +   F +EY PT     YR  VV+ G    L ILD     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 58  ---TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--KRVKDAEEVPMV 112
                  +E+   R + +R    F+LV+ + S  SF  +   R+QI   R    +E P+V
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV 120

Query: 113 LVGNKCDL 120
           +VGNK D 
Sbjct: 121 VVGNKRDQ 128

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 4/164 (2%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEE 63
           +++++G+ GVGK++L  +   + F +    T+   ++ K V + G+   L I DTAGQE 
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST- 122
           ++++   Y R+ +G +LV+ +   ++F+D+  + + I +   +E+  ++LVGNK D  T 
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETD 120

Query: 123 WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
             +   Q ++ A+Q   + F + SAK    VD+ F  LV +I K
Sbjct: 121 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 77.6 bits (191), Expect = 4e-18
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VV+G G  GK++L     + +F   Y+PT+ ++Y   + +DG    L + DTAGQEE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL--- 120
             +R          +L F+V++  S E++ S  + +  ++     V +VLV  KCDL   
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVES--KWLAEIRHHCPGVKLVLVALKCDLREP 119

Query: 121 ------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
                  T  +   +   +A++ N   +++ SAK   GV++AF    R
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 76.9 bits (189), Expect = 5e-18
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGK+ L  +  Q  F      TI  D   K V I GE   L I DTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R+    +L + +   +SF  +  +  +I++  +  +V  +LVGNK DL+ 
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDLAE 126

Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   +A+E ++  ++ +++TSAK    V+  F  L   +
Sbjct: 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 17/167 (10%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K VVVG G VGK+ L +    + F +EY PT+ D Y   V + G+  LL + DTAGQE+Y
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLS-- 121
             +R       + FL+ F+V +  SF+++    E +  +K+ A  VP +L+G + DL   
Sbjct: 62  DRLRPLSYPMTDVFLICFSVVNPASFQNV--KEEWVPELKEYAPNVPYLLIGTQIDLRDD 119

Query: 122 --TWA---------VDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAF 156
             T A         + + Q Q+LA++     +++ SA T+ G+   F
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 13/168 (7%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-----RKQVVIDGETALLDILDTA 59
           K++++G   VGKS    +L++   +D Y+P    +Y     +     +G+T L+D  DTA
Sbjct: 2   KIILLGDSAVGKS----KLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTA 57

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE +  M   Y       +LVF V    +++++  + E+++  +   E+P ++V NK D
Sbjct: 58  GQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKID 115

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           L        +    AE+ N+P    SA     V   F   ++     K
Sbjct: 116 LDPSVT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSYRKQVVIDGETALLDI 55
           +KLV+VG GG GK+    + +   F  +Y  T+          + R ++  +       +
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------V 53

Query: 56  LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
            DTAGQE++  +RD Y   G+  +++F V S  +++++ ++   + RV   E +P+VL G
Sbjct: 54  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCG 111

Query: 116 NKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           NK D+    V   Q     ++ N+ + + SAK+    +  F  L R++  +  L
Sbjct: 112 NKVDIKDRKVKPKQITFHRKK-NLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           ++  +RD Y   G+  +++F V +  +++++ ++   + RV   E +P+VL GNK D+  
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
             V   Q      + N+ + + SAK+    +  F  L R++  D  L 
Sbjct: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178

Length = 219

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSY-RKQVVIDGETALLDILDTAGQE 62
           K+V++G   VGK++L  + + + F+   Y  TI  ++  K++V+      L I DTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-- 120
            Y AM   Y R  +  ++ + +    SFE    + ++++ ++  E   + L G K DL  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIE 119

Query: 121 ---STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159
              S   VD +  Q+ A++      +TS+KT   VD+ F  +
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 66.4 bits (162), Expect = 4e-14
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEE 63
           K++VVG   VGK+ L  +  ++ F   Y  TI  D   ++  + G    L + DTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST- 122
           +  +   Y R  +  ++VF +  + S E    + E   +  D   V + LVG K DLS+ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 123 --WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
             +A+    A +LA +    +   SA T   V D F+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFF 158

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 9   VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAM 67
           VG GG GK+    + +   F  +Y  T+       V       +  ++ DTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 68  RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127
           RD Y   G+  +++F V +  +++++ ++   + RV   E +P+VL GNK D+    V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKA 118

Query: 128 NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
                   + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           ++V++G  GVGKS+L + L+   F +     + +       +  E     I+DT+ + + 
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQD 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYR-EQIKRVKDAEEVPMVLVGNKCDL--- 120
            A     +R      LV++V+   + E I +     I+R+    +VP++LVGNK DL   
Sbjct: 63  RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRDG 120

Query: 121 STWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFY 157
           S+ A    +   +  +F      ++ SAKT + V + FY
Sbjct: 121 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEE 63
           K ++VG   VGK  +   L        Y   +   Y+   +++DG    L + DT+GQ  
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-T 122
           +  +   Y R  +G +LV+ + +  SF+ I  + ++I   + A  VP +LVGN+  L+  
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEID--EHAPGVPKILVGNRLHLAFK 125

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
             V   QAQ  AE+  + F + S      + ++F  L R
Sbjct: 126 RQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KL +VG    GKSAL  + +   +V    P     ++K+V++DG++ LL I D  G  + 
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGG-RFKKEVLVDGQSHLLLIRDEGGAPDA 60

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
                Q+    +  + VF++    SF+ +     Q+   ++  E+P++LVG +  +S   
Sbjct: 61  -----QFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISASN 115

Query: 124 --AVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAF 156
              +D  +A++L        + +T A   + V+  F
Sbjct: 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+V+VG    GK+AL     ++ F + Y PT+ ++Y     +D +   L + DT+G   Y
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTW 123
             +R       +  L+ F ++  ++ + +   ++    V++     P++LVG K DL T 
Sbjct: 63  DNVRPLSYPDSDAVLICFDISRPETLDSV--LKKWKGEVREFCPNTPVLLVGCKSDLRT- 119

Query: 124 AVDMNQAQELAEQFNIP-----------------FIKTSAKT-RMGVDDAFYT 158
             D++   EL+ +  IP                 +++ SAKT    V D F  
Sbjct: 120 --DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEM 170

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--IEDSYRKQVVIDGETALLDILDTAG 60
           E KL++VG GGVGK++L  QLI   F  +   T  I     K    + +   L++ D  G
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE Y A    ++ +   +LLVF + +      +  +  QIK        P++LVG   D 
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIK--AFGGVSPVILVGTHIDE 118

Query: 121 STWAVDMNQAQELAEQFNIP---FIKTSAKTRMGVDDAFYTLVRE 162
           S    D+ +   L ++F          S K   G+ +    + +E
Sbjct: 119 SC-DEDILKK-ALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 28  FVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS 86
           F + Y  TI  D   K + +D     L + DTAGQE + ++   Y+R     ++V+ + +
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 87  MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTS 145
            +SFE+   + + I   +  ++V + LVGNK DL     V   +  + A+++N  F +TS
Sbjct: 65  RQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETS 123

Query: 146 AK 147
           AK
Sbjct: 124 AK 125

Length = 176

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG    GK+AL     ++++ + Y PT+ ++Y     ID     L++ DT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124
             +R       +  L+ F ++  ++ + +   + Q +  +      +VLVG K D+ T  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSV-LKKWQGETQEFCPNAKLVLVGCKLDMRT-- 119

Query: 125 VDMNQAQELAEQFNIP 140
            D++  +EL++Q  IP
Sbjct: 120 -DLSTLRELSKQRLIP 134

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG    GK+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST- 122
             +R       +  L+ F ++  ++ + +   ++ +I+         M+LVG K DL T 
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 124

Query: 123 ------------WAVDMNQAQELAEQFN-IPFIKTSA-KTRMGVDDAFY 157
                         V  +Q   +A+Q     +I+ SA ++   V D F+
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 173

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR----KQVVIDGETALLD-- 54
           M E K+VV+G  G GK+     L     V         S +      V +D  +  LD  
Sbjct: 8   MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED 67

Query: 55  ----ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP 110
               +  T GQE +  M +   R   G +++   +   +F       E I  +     +P
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA----EEIIDFLTSRNPIP 123

Query: 111 MVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159
           +V+  NK DL      +  +     E  ++P I+  A    G  D    L
Sbjct: 124 VVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173

Length = 187

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 28/164 (17%)

Query: 7   VVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAG---- 60
            + G   VGKS+L   L+  +   V     T  D  RK+  +      + ++DT G    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLG-PVVLIDTPGLDEE 59

Query: 61  ----QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYR-EQIKRVKDAEEVPMVLVG 115
               +E     R    R     L++  V+S     D+     E    +      P++LV 
Sbjct: 60  GGLGRERVEEARQVADRAD---LVLLVVDS-----DLTPVEEEAKLGLLRERGKPVLLVL 111

Query: 116 NKCDLST-----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
           NK DL         +   + + L +    P I  SA    G+D+
Sbjct: 112 NKIDLVPESEEEELLRERKLELLPDL---PVIAVSALPGEGIDE 152

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 22/167 (13%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           +++++G  G GK+ +  +L     V    PTI  +      ++ +     + D  GQ++ 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVET---VEYKNVKFTVWDVGGQDKI 56

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCDLS 121
             +   Y    +G  L+F V+S    E I   + ++ ++ + EE    P++++ NK DL 
Sbjct: 57  RPLWKHYYENTDG--LIFVVDSSDR-ERIEEAKNELHKLLNEEELKGAPLLILANKQDL- 112

Query: 122 TWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLV 160
                     EL E   +  IK         SA T  G+D+    L+
Sbjct: 113 ---PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KLV+VG    GK+A+   L ++ + + Y PT+ ++Y   +  + +   L + DT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
             +R       +  LL F ++  + F+  +  +R +I     +  +  +L+G K DL T 
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT- 131

Query: 124 AVDMNQAQELAEQFNIP 140
             D++   EL+ Q   P
Sbjct: 132 --DLSTLMELSNQKQAP 146

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEE 63
           K+V++G   VGK++L  + ++  F D    T+  + Y KQ         + I DTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQ 56

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           +  +   Y R     +L + V++++S E++      +    + E+    +VGNK DL+  
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN-EDCLFAVVGNKLDLTE- 114

Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
                 A    E+     +    + ++ ++DA     + I K KML      
Sbjct: 115 ----EGALAGQEKDAGDRVSPEDQRQVTLEDAK-AFYKRINKYKMLDEDLSP 161

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 45/197 (22%)

Query: 4   YKLVVVGAGGVGKS-----------ALTIQLIQNHF-----VDEYDPTIEDSYRKQVVID 47
            K VVVG   VGK+               QL+  H      +D+Y    E   R + V+D
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 48  GETALLDILDTAGQEEYSAMRDQYMRTGEG--FLLVFAVNSMKSFEDIGS-YREQIKRVK 104
           G +  L + DT G  +    +D+    G     LL F++ S  S  ++ + +  +I+   
Sbjct: 63  GVSVSLRLWDTFGDHD----KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF- 117

Query: 105 DAEEVPMVLVGNKCDLSTWAVDMN--------------------QAQELAEQFNIPFIKT 144
               VP++LVG K DL    +D                        + +A++  IP+ +T
Sbjct: 118 -CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYET 176

Query: 145 SAKTRMGVDDAFYTLVR 161
           S  T+ GV D F   +R
Sbjct: 177 SVVTQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 17/183 (9%)

Query: 6   LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG--ETALLDILDTAGQEE 63
           +V++G    GK+ +  +L  N FV+   PT   +  K  V  G  +       D  GQE+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEK 64

Query: 64  YSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
              +   Y R  +G  +VF V+S  ++  E+  +   +I +  + + VP++++ NK DL 
Sbjct: 65  LRPLWKSYTRCTDG--IVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLP 122

Query: 122 TWAVDMNQAQELAEQFNIPFI-----KTSAKTRMGVD---DAFYTLVREIKKDKMLRGKE 173
                    + LA                A    G+    +  Y ++  +K+ KMLR ++
Sbjct: 123 NALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI--LKRRKMLRQQK 180

Query: 174 KKK 176
           KK+
Sbjct: 181 KKR 183

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 11/160 (6%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEE 63
           K+ ++G   +GK++L ++ ++  F +EY  T+  ++  K + I G      I D  GQ E
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL--- 120
           +  M     +     L +F +    +   I  +  Q +       +P +LVG K DL   
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIP-ILVGTKYDLFAD 119

Query: 121 ----STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
                   +   QA++ A+    P I  S    + V   F
Sbjct: 120 LPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 93  IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
            G Y  ++       ++P ++V NK DL     +  + ++L ++F +P I  SA T  G+
Sbjct: 99  PGEYELELIEELKERKIPYIVVINKIDLGE---ESAELEKLEKKFGLPPIFVSALTGEGI 155

Query: 153 DDAFYTLVREIKKDK 167
           D+    ++  + +D 
Sbjct: 156 DELKEAIIELLPEDF 170

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 23/126 (18%)

Query: 43  QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEG---FLLVFAVNSMKSFEDIGSY-RE 98
           QV ID +   +  +DT G E ++ MR    R        +LV A +     + +     E
Sbjct: 41  QVPIDVKIPGITFIDTPGHEAFTNMR---ARGASVTDIAILVVAAD-----DGVMPQTIE 92

Query: 99  QIKRVKDAEEVPMVLVGNKCDLSTWAV--------DMNQAQELAEQF--NIPFIKTSAKT 148
            I   K A  VP+++  NK D              ++++   + E++  ++  +  SAKT
Sbjct: 93  AINHAKAAN-VPIIVAINKIDKPYGTEADPERVKNELSELGLVGEEWGGDVSIVPISAKT 151

Query: 149 RMGVDD 154
             G+DD
Sbjct: 152 GEGIDD 157

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 26/171 (15%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAG-- 60
           K+ ++G   VGKS+L   ++      V +   T  DS   +   DG   +L  +DTAG  
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVL--IDTAGIR 237

Query: 61  --------QEEYSAMRD-QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
                    E+YS  R  + +   +  LLV         E I     +I  + +     +
Sbjct: 238 RKGKITESVEKYSVARTLKAIERADVVLLVIDAT-----EGISEQDLRIAGLIEEAGRGI 292

Query: 112 VLVGNKCDL-STWAVDMNQA-QELAEQFN----IPFIKTSAKTRMGVDDAF 156
           V+V NK DL       M +  ++L  +       P +  SA T  G+D  F
Sbjct: 293 VIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLF 343

Length = 444

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 79  LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN 138
           LLV   +   + ED     E ++ +KD    P+++V NK DL+          +L E+  
Sbjct: 299 LLVLDASEPLTEED----DEILEELKDK---PVIVVLNKADLT-------GEIDLEEENG 344

Query: 139 IPFIKTSAKTRMGVDDAFYTLVREIKK 165
            P I+ SAKT  G+D+    L   IK+
Sbjct: 345 KPVIRISAKTGEGIDE----LREAIKE 367

Length = 449

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 32/138 (23%)

Query: 44  VVIDGETALLDILDTAGQEEYSAMRDQYMRTG----EGFLLVFAVNS--MKSFEDIGSYR 97
           V  + +  L++I+DT G  +++      M  G    +G +LV       M          
Sbjct: 59  VSFETKKRLINIIDTPGHVDFTKE----MIRGASQADGAILVVDAVEGVM---------- 104

Query: 98  EQIK---RVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF---------NIPFIKTS 145
            Q +    +     VP+++  NK D    A      +E++ +           +P +  S
Sbjct: 105 PQTREHLLLAKTLGVPIIVFINKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGS 164

Query: 146 AKTRMGVDDAFYTLVREI 163
           A T  G+D+    L   +
Sbjct: 165 ALTGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           K+V++G   VGKS+L   L+      V +   T  D   + + ++G    + ++DTAG  
Sbjct: 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIR 276

Query: 63  EYSAMRD-----------QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
           E     D           + +   +  L V   +     ED+       K      + P+
Sbjct: 277 ETD---DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPK------KKPI 327

Query: 112 VLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
           ++V NK DL    V   + +          I  SAKT  G+D 
Sbjct: 328 IVVLNKADL----VSKIELESEKLANGDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 38.9 bits (92), Expect = 7e-04
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
           P ++V NK DL          +EL E    P    SA T  G+D+  Y L   ++
Sbjct: 275 PRIVVLNKIDLLDEEELEELLKELKEALGKPVFPISALTGEGLDELLYALAELLE 329

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 95  SYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151
           S  EQ+   K +K     P+++V NK DL T   D+++ ++  E+     IK S  T  G
Sbjct: 96  SIEEQLSLFKEIKPLFNKPVIVVLNKIDLLTEE-DLSEIEKELEKEGEEVIKISTLTEEG 154

Query: 152 VDDAFYTLVREIKKDKML 169
           VD+     ++    + +L
Sbjct: 155 VDE-----LKNKACELLL 167

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 96  YREQIKRVKD------AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR 149
             EQI+ V++      A+++P++LV NK DL    +D  + +E         +  SAKT 
Sbjct: 135 REEQIETVEEVLKELGADDIPIILVLNKIDL----LDDEELEERLRAGRPDAVFISAKTG 190

Query: 150 MGVDD 154
            G+D 
Sbjct: 191 EGLDL 195

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 107 EEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            + P+++V NK DL      ++ A+ ++E    P I  SAKT  G+D+    L   + +
Sbjct: 108 AKKPVIVVLNKSDL------LSDAEGISELNGKPIIAISAKTGEGIDE----LKEALLE 156

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX

 Score = 38.6 bits (91), Expect = 9e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 11/64 (17%)

Query: 96  YREQIKRVKD------AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR 149
             EQI+ V+       AE++P +LV NK DL    +D  + + L E +    +  SAKT 
Sbjct: 283 REEQIEAVEKVLEELGAEDIPQLLVYNKIDL----LDEPRIERLEEGYPE-AVFVSAKTG 337

Query: 150 MGVD 153
            G+D
Sbjct: 338 EGLD 341

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 38/177 (21%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+V +G    GK+ L + ++++  + ++ PT+  +  +++ I          D  G E  
Sbjct: 21  KIVFLGLDNAGKTTL-LHMLKDDRLAQHVPTLHPT-SEELTIGNVK--FTTFDLGGHE-- 74

Query: 65  SAMR--DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
            A R    Y    +G  +VF V++    E     +E++  + + EE   VP++++GNK D
Sbjct: 75  QARRVWKDYFPEVDG--IVFLVDAA-DPERFQESKEELDSLLNDEELANVPILILGNKID 131

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKT--------------------SAKTRMGVDDAF 156
               AV     +EL E   +    T                    S   R G  + F
Sbjct: 132 KPG-AVSE---EELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGF 184

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 91  EDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTWAVDMNQ---AQELAEQFNIPFIKTSA 146
           ED  +  E++       +  P ++V NK D        N     +    +  IP + TSA
Sbjct: 95  EDQKTLNEEVSGSFLFLKNKPEMIVANKID----MASENNLKRLKLDKLKRGIPVVPTSA 150

Query: 147 KTRMGVDDAFYTLVREIKKD 166
            TR+G+D      +R I+K 
Sbjct: 151 LTRLGLDRV----IRTIRKL 166

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 94  GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-LAEQFNIPFIK------TSA 146
           GS    +  +  A   P++LVGNK DL    V  N+ ++ + ++  I  +K       SA
Sbjct: 48  GSLIPGLAELIGA--KPVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSA 105

Query: 147 KTRMGVDDAFYTLVREIKKDKMLRGK 172
           K   GV++    L+ EIKK    RG 
Sbjct: 106 KKGWGVEE----LIEEIKKLAKYRGD 127

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 37.0 bits (87), Expect = 0.003
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFN--------IPFIKTSAKTRMGVDDAFYTLVR 161
            +V+V NK DL    VD    +E  ++           P +  SA T  GVD      + 
Sbjct: 286 ALVIVVNKWDL----VDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL-EAID 340

Query: 162 EIKKDKMLR 170
           E  ++   R
Sbjct: 341 EAYENANRR 349

Length = 435

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 110 PMVLVGNKCDLSTWAVDMNQA-QELAEQFN----IPFIKTSAKTRMGVDDAFYTLVREIK 164
            +V+V NK DL        +  +EL  +       P +  SA T  GVD      + E+ 
Sbjct: 285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDA-IDEVY 343

Query: 165 KDKMLR 170
           ++   R
Sbjct: 344 ENANRR 349

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0094|consensus	221		100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0078|consensus	207		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080|consensus	209		100.0
KOG0079|consensus	198		100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0394|consensus	210		100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098|consensus	216		100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0087|consensus	222		100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0093|consensus	193		100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0091|consensus	213		100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
KOG0395|consensus	196		100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0088|consensus	218		100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095|consensus	213		100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
KOG0086|consensus	214		100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
KOG0393|consensus	198		99.98
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
KOG0081|consensus	219		99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
KOG0083|consensus	192		99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0097|consensus	215		99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
KOG4252|consensus	246		99.95
PTZ00099	176	rab6; Provisional	99.95
KOG0073|consensus	185		99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
KOG0070|consensus	181		99.93
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.93
PRK04213	201	GTP-binding protein; Provisional	99.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
KOG3883|consensus	198		99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
KOG0075|consensus	186		99.89
KOG0071|consensus	180		99.89
PRK11058	426	GTPase HflX; Provisional	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
COG1159	298	Era GTPase [General function prediction only]	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
KOG1673|consensus	205		99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
KOG0076|consensus	197		99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.85
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
KOG0072|consensus	182		99.83
COG0218	200	Predicted GTPase [General function prediction only	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
KOG0096|consensus	216		99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
KOG0074|consensus	185		99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
KOG1423|consensus	379		99.8
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.79
KOG4423|consensus	229		99.78
PRK12736	394	elongation factor Tu; Reviewed	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.77
COG2262	411	HflX GTPases [General function prediction only]	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
KOG1489|consensus	366		99.76
KOG1707|consensus	625		99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
CHL00071	409	tufA elongation factor Tu	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.74
COG1163	365	DRG Predicted GTPase [General function prediction	99.73
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.72
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.72
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.7
KOG1145|consensus	683		99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.7
KOG0462|consensus	650		99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
PLN03127	447	Elongation factor Tu; Provisional	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
KOG1191|consensus	531		99.66
KOG0077|consensus	193		99.65
PRK09602	396	translation-associated GTPase; Reviewed	99.64
KOG0090|consensus	238		99.63
PRK12739	691	elongation factor G; Reviewed	99.63
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.62
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.61
KOG1490|consensus	620		99.61
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.61
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.6
PRK09866	741	hypothetical protein; Provisional	99.6
PRK00007	693	elongation factor G; Reviewed	99.58
KOG1532|consensus	366		99.57
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.56
PRK12740	668	elongation factor G; Reviewed	99.56
KOG3905|consensus	473		99.56
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.54
PRK13768	253	GTPase; Provisional	99.53
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.53
PRK14845	1049	translation initiation factor IF-2; Provisional	99.52
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.5
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.49
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.49
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.49
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.47
PTZ00258	390	GTP-binding protein; Provisional	99.47
PRK09601	364	GTP-binding protein YchF; Reviewed	99.45
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.45
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.45
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.42
PRK07560	731	elongation factor EF-2; Reviewed	99.41
KOG1486|consensus	364		99.41
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.4
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
KOG0082|consensus	354		99.38
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.38
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.38
PTZ00416	836	elongation factor 2; Provisional	99.37
KOG3886|consensus	295		99.36
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.36
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.36
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.35
KOG0461|consensus	522		99.34
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.33
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.31
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.31
KOG1707|consensus	625		99.3
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.29
KOG1144|consensus	1064		99.29
KOG0410|consensus	410		99.28
KOG0705|consensus	749		99.26
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.24
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.23
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.21
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.21
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.21
KOG0458|consensus	603		99.2
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.16
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.12
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.11
KOG2486|consensus	320		99.1
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.1
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
KOG0463|consensus	641		99.08
KOG1547|consensus	336		99.07
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.04
KOG1954|consensus	532		99.04
KOG2655|consensus	366		99.03
KOG1143|consensus	591		99.03
KOG0468|consensus	971		99.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.0
KOG0085|consensus	359		99.0
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.98
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.97
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.96
PRK00098	298	GTPase RsgA; Reviewed	98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.95
PRK12288	347	GTPase RsgA; Reviewed	98.94
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.94
PRK12289	352	GTPase RsgA; Reviewed	98.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.92
KOG3887|consensus	347		98.92
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.91
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.9
KOG1487|consensus	358		98.88
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.87
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.8
KOG0099|consensus	379		98.8
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.78
KOG0466|consensus	466		98.78
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.78
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.76
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.76
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.75
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.73
COG1161	322	Predicted GTPases [General function prediction onl	98.72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.71
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.69
KOG0448|consensus	749		98.69
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.68
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.68
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.64
PRK12288	347	GTPase RsgA; Reviewed	98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.6
PRK13796	365	GTPase YqeH; Provisional	98.6
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.58
PRK14974	336	cell division protein FtsY; Provisional	98.54
PRK12289	352	GTPase RsgA; Reviewed	98.54
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.5
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.49
cd03112	158	CobW_like The function of this protein family is u	98.49
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.47
KOG1534|consensus	273		98.47
KOG1491|consensus	391		98.45
KOG0447|consensus	980		98.45
KOG0460|consensus	449		98.43
COG1162	301	Predicted GTPases [General function prediction onl	98.4
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.36
KOG0467|consensus	887		98.35
PRK13796	365	GTPase YqeH; Provisional	98.34
PRK01889	356	GTPase RsgA; Reviewed	98.32
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.28
KOG3859|consensus	406		98.26
COG3523	1188	IcmF Type VI protein secretion system component Va	98.24
COG0523	323	Putative GTPases (G3E family) [General function pr	98.21
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.2
cd03110	179	Fer4_NifH_child This protein family's function is	98.2
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.19
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.17
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.16
KOG0465|consensus	721		98.14
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.13
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.13
cd03114	148	ArgK-like The function of this protein family is u	98.12
KOG1424|consensus	562		98.11
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
PRK13695	174	putative NTPase; Provisional	98.07
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.06
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.06
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.06
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.06
KOG0464|consensus	753		98.05
KOG0459|consensus	501		97.98
PRK10867	433	signal recognition particle protein; Provisional	97.98
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.98
TIGR00959	428	ffh signal recognition particle protein. This mode	97.94
COG1162	301	Predicted GTPases [General function prediction onl	97.93
KOG2485|consensus	335		97.92
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.85
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.83
KOG4273|consensus	418		97.82
KOG2484|consensus	435		97.81
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.8
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.79
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.79
COG1161	322	Predicted GTPases [General function prediction onl	97.78
PRK08118	167	topology modulation protein; Reviewed	97.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.77
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.77
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.73
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.72
PRK07261	171	topology modulation protein; Provisional	97.72
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.71
KOG1970|consensus	634		97.7
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.7
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.67
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.66
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.65
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.62
PRK08233	182	hypothetical protein; Provisional	97.61
KOG0469|consensus	842		97.6
KOG2423|consensus	572		97.6
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.6
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.59
PRK13851	344	type IV secretion system protein VirB11; Provision	97.57
PRK01889	356	GTPase RsgA; Reviewed	97.56
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.54
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.52
cd02117	212	NifH_like This family contains the NifH (iron prot	97.52
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.52
PRK14737	186	gmk guanylate kinase; Provisional	97.51
PRK04195	482	replication factor C large subunit; Provisional	97.51
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.5
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.5
PRK14530	215	adenylate kinase; Provisional	97.49
PRK06217	183	hypothetical protein; Validated	97.48
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.48
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.47
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.46
PRK14738	206	gmk guanylate kinase; Provisional	97.46
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.46
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.45
PRK03839	180	putative kinase; Provisional	97.44
PF00004	132	AAA: ATPase family associated with various cellula	97.43
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.42
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.39
PRK14531	183	adenylate kinase; Provisional	97.39
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.38
PTZ00088	229	adenylate kinase 1; Provisional	97.38
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.37
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.37
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.37
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.37
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.37
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.36
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.36
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.36
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.34
smart00382	148	AAA ATPases associated with a variety of cellular	97.34
PRK05480	209	uridine/cytidine kinase; Provisional	97.34
PRK13949	169	shikimate kinase; Provisional	97.34
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.34
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.33
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.33
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.33
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.33
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.33
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.32
cd02036	179	MinD Bacterial cell division requires the formatio	97.32
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.31
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.3
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.3
KOG1533|consensus	290		97.29
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.28
PRK05057	172	aroK shikimate kinase I; Reviewed	97.28
PRK14532	188	adenylate kinase; Provisional	97.28
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.27
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.27
PTZ00301	210	uridine kinase; Provisional	97.26
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.26

>KOG0084|consensus

Probab=100.00  E-value=7.5e-41  Score=220.23  Aligned_cols=168  Identities=39%  Similarity=0.698  Sum_probs=155.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -|||+|+|+.|||||.|+.|+....+...+..|.+ +.......++++.+.+++|||+||++++.+...+|++++++|+|
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v   88 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV   88 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence            48999999999999999999999999999999998 55566778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCC-EEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||+++.+||..+..|+.++.++. ..+.|.++|+||+|+.+ ..++.++++.|+..++++ ++++||+++.|++++|..|
T Consensus        89 yDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l  167 (205)
T KOG0084|consen   89 YDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL  167 (205)
T ss_pred             EEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence            99999999999999999999875 45689999999999987 778999999999999998 9999999999999999999


Q ss_pred             HHHHHhhhhhhh
Q psy11135        160 VREIKKDKMLRG  171 (191)
Q Consensus       160 ~~~~~~~~~~~~  171 (191)
                      ...+..+.....
T Consensus       168 a~~lk~~~~~~~  179 (205)
T KOG0084|consen  168 AKELKQRKGLHV  179 (205)
T ss_pred             HHHHHHhcccCC
Confidence            999987655533

>KOG0092|consensus

Probab=100.00  E-value=5.5e-41  Score=220.07  Aligned_cols=169  Identities=31%  Similarity=0.552  Sum_probs=156.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .++||+|+|..++|||||+-|+..+.+.....+|++ .+......+++..+.+.||||+|+++|.++.+.|+++++++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            579999999999999999999999999888788888 5556677788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++.+||..++.|...+.+... +++-+.+||||+|+.. +.+..++++.+++..|..++++||+++.|++++|..|
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            9999999999999999999988544 7788889999999998 8899999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhh
Q psy11135        160 VREIKKDKMLRG  171 (191)
Q Consensus       160 ~~~~~~~~~~~~  171 (191)
                      .+.+++......
T Consensus       163 a~~lp~~~~~~~  174 (200)
T KOG0092|consen  163 AEKLPCSDPQER  174 (200)
T ss_pred             HHhccCcccccc
Confidence            999998776654

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=4.1e-39  Score=222.01  Aligned_cols=187  Identities=53%  Similarity=0.882  Sum_probs=161.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|.+|||||||++++..+.+...+.++.++.+......++..+.+.+|||||++++...+..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999888877788888766666667788888899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ++.++++.+..|+..+.....  ..+.|+++|+||+|+.. ..+..++...+++.++++++++||++|.|++++|+++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999988866433  35789999999999965 566777888889999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135        162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL  191 (191)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
                      .+.+.+.........+.....++++||+|+
T Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         161 ALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             HHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            988777776655666666677788888775

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0094|consensus

Probab=100.00  E-value=2.3e-39  Score=212.62  Aligned_cols=168  Identities=30%  Similarity=0.543  Sum_probs=157.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      ++.+|++++|..+|||||||++++.+.+..+|..|.+ ++...++.+.+..+.+++|||+||++++.+.+.|++++.+++
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            3568999999999999999999999999999999999 666777888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||+++..+|+...+|+..+.......+.-+++|+||.||.+ ++++.++....++++++.|+++||+.|+||+.+|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            9999999999999999999999877777788999999999988 788999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy11135        159 LVREIKKDKM  168 (191)
Q Consensus       159 i~~~~~~~~~  168 (191)
                      |...+++...
T Consensus       180 Iaa~l~~~~~  189 (221)
T KOG0094|consen  180 IAAALPGMEV  189 (221)
T ss_pred             HHHhccCccc
Confidence            9888877655

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=213.26  Aligned_cols=166  Identities=73%  Similarity=1.121  Sum_probs=149.2

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|.+|||||||++++....+...+.++.+..+.....+++..+.+.+|||||++++..++..+++.++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            56899999999999999999999998887788888877777777788988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999887765556889999999999865 4567778888888889999999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+.+.
T Consensus       163 ~~~l~~~  169 (189)
T PTZ00369        163 VREIRKY  169 (189)
T ss_pred             HHHHHHH
Confidence            9888664

>KOG0078|consensus

Probab=100.00  E-value=1.8e-37  Score=207.14  Aligned_cols=167  Identities=35%  Similarity=0.617  Sum_probs=154.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||+++.++....+...+..|.+ +........++..+.+++|||+||+++..+...|++.++++++|
T Consensus        12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv   91 (207)
T KOG0078|consen   12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV   91 (207)
T ss_pred             EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence            58999999999999999999999999999998888 55566778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++..+|+++..|+..+..+ ..+.+|.++|+||+|+.. +.++.+.++.+|.++|++|+|+||++|.||++.|..|.
T Consensus        92 yDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La  170 (207)
T KOG0078|consen   92 YDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA  170 (207)
T ss_pred             EEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence            9999999999999999999885 445899999999999987 78999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhh
Q psy11135        161 REIKKDKMLR  170 (191)
Q Consensus       161 ~~~~~~~~~~  170 (191)
                      +.+.+.....
T Consensus       171 ~~i~~k~~~~  180 (207)
T KOG0078|consen  171 RDILQKLEDA  180 (207)
T ss_pred             HHHHhhcchh
Confidence            9998655543

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.3e-37  Score=212.50  Aligned_cols=163  Identities=36%  Similarity=0.573  Sum_probs=144.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+.+||+++|..|||||||+.++..+.+...+.+|.+..+.....+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            78899999999999999999999999988888888877666666788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcC-CCEEEec
Q psy11135         81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFN-IPFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~s  145 (191)
                      |||++++++++.+. .|...+...  .++.|+++|+||.|+.+.             .+..++++.+++.++ ++++++|
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            99999999999997 577766653  357999999999999642             356778899999998 5899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy11135        146 AKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~  165 (191)
                      |++|.|++++|.++.+.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=8.6e-37  Score=212.20  Aligned_cols=185  Identities=29%  Similarity=0.506  Sum_probs=153.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +||+++|++|||||||++++.+..+...+.++.+..+ ...+.++ +..+.+.+|||||++++..++..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999888777777776433 3445566 7788899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++++++.+..|+..+.....   ....|+++|+||+|+.. ..+..+++.++++..+ .+++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            999999999999999888765322   35789999999999974 5678889999999999 689999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhh---------ccccCCCccccce
Q psy11135        157 YTLVREIKKDKMLRGKEKK---------KRGISGNKLKQCC  188 (191)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  188 (191)
                      ++|.+.+.+......+...         +..+....+++||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            9999999776544333332         2334445567798

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.5e-36  Score=207.95  Aligned_cols=161  Identities=27%  Similarity=0.465  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|..|||||||+.++....+...+.++.+..+ .....+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV   85 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV   85 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999998887777666655333 44466788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+....  ++.|+++|+||.|+.. ..++.++++.+++..+++++++||++|.|++++|++|.
T Consensus        86 fD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121          86 YDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999997643  5799999999999975 56789999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+..
T Consensus       164 ~~i~~  168 (189)
T cd04121         164 RIVLM  168 (189)
T ss_pred             HHHHH
Confidence            87764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080|consensus

Probab=100.00  E-value=1.2e-37  Score=198.37  Aligned_cols=169  Identities=33%  Similarity=0.505  Sum_probs=156.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|..|+|||||+-++....+....+.|.+ ++......+++..+++.+|||+|+++++.+++.|++.+.++|+|
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV   90 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV   90 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence            58999999999999999999999998888777777 55566678999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++..++|..+..|++++..|.-.+++..++|+||+|... +.++.++...|++++++-|+++||++.+++...|++++
T Consensus        91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelv  170 (209)
T KOG0080|consen   91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELV  170 (209)
T ss_pred             EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHH
Confidence            99999999999999999999998888899999999999884 77899999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhh
Q psy11135        161 REIKKDKMLRG  171 (191)
Q Consensus       161 ~~~~~~~~~~~  171 (191)
                      ..+.+....-.
T Consensus       171 eKIi~tp~l~~  181 (209)
T KOG0080|consen  171 EKIIETPSLWE  181 (209)
T ss_pred             HHHhcCcchhh
Confidence            99988776655

>KOG0079|consensus

Probab=100.00  E-value=1.1e-37  Score=195.84  Aligned_cols=183  Identities=32%  Similarity=0.558  Sum_probs=160.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++.+++|++|+|||+|+.++....+..+|..|++ +....+..+++..+.++|||++|+++++.++..+++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            5678999999999999999999999999998888 555667788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++.+||.+...|+..+...  .+..|-++|+||.|+.. +-+..++++.++.+.|+.+|++|++++.|++..|.-|.+
T Consensus        89 DVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            999999999999999999874  35789999999999988 557889999999999999999999999999999999998


Q ss_pred             HHHhhhh-----hhhhhhhccccCCCccccce
Q psy11135        162 EIKKDKM-----LRGKEKKKRGISGNKLKQCC  188 (191)
Q Consensus       162 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  188 (191)
                      +++....     .++..--.-+.++.+.|+||
T Consensus       167 qvl~~k~r~~~~~~r~~~~~l~~n~~~~~k~c  198 (198)
T KOG0079|consen  167 QVLQAKLRESVEQQRADAVSLKDNSKSTKKCC  198 (198)
T ss_pred             HHHHHHHhhcHHHHhhcceEeccCCCccccCC
Confidence            8876552     22223333456677788888

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.9e-36  Score=204.61  Aligned_cols=164  Identities=54%  Similarity=0.898  Sum_probs=147.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+|||||+.++..++..++..+|++++|
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            46899999999999999999999999888888888776766677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ..++.+++..+++..+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998887776654456799999999999865 56788899999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            87765

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.2e-36  Score=211.41  Aligned_cols=163  Identities=23%  Similarity=0.363  Sum_probs=146.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ..+||+++|+.|||||+|++++....+...+.||....+...+.+++..+.+.+|||+|++.+..++..++++++++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            36899999999999999999999999988888888877666677899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||++++++|+.+ ..|+..+....  ++.|+++|+||+|+..             ..++.++++++++++++ +|+++||
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            999999999984 78988887643  4689999999999863             45888999999999998 6999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHhh
Q psy11135        147 KTRM-GVDDAFYTLVREIKKD  166 (191)
Q Consensus       147 ~~~~-~v~~l~~~i~~~~~~~  166 (191)
                      ++|. |++++|..++..+.+.
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9997 8999999999887664

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394|consensus

Probab=100.00  E-value=5.4e-37  Score=199.59  Aligned_cols=167  Identities=33%  Similarity=0.548  Sum_probs=152.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+++|++|+|||||++++....+...+..|.+ +.....+.++++.+.+++|||+|++++.++...+++++|+.+++
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv   88 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   88 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence            38999999999999999999999999888888887 67788889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEEecCCCCC---CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDA---EEVPMVLVGNKCDLST---WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDD  154 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~  154 (191)
                      ||++++.+|+.+..|..++..+...   ...|+||++||+|+..   +.++...++++++..| +|||++||+...||++
T Consensus        89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~  168 (210)
T KOG0394|consen   89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE  168 (210)
T ss_pred             eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence            9999999999999999999876542   4579999999999966   7899999999999877 8999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy11135        155 AFYTLVREIKKDKML  169 (191)
Q Consensus       155 l~~~i~~~~~~~~~~  169 (191)
                      +|..+.+........
T Consensus       169 AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  169 AFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHhccch
Confidence            999999888776543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.7e-36  Score=205.79  Aligned_cols=160  Identities=27%  Similarity=0.439  Sum_probs=144.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ..+||+++|..|||||||++++..+.+...+.||....+.....+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv   83 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   83 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence            36899999999999999999999999988888888877666778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+..             ..++.++++++++++++ +|+++||
T Consensus        84 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          84 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            999999999997 78988887653  5789999999999853             34889999999999996 8999999


Q ss_pred             CCCCC-HHHHHHHHHHHH
Q psy11135        147 KTRMG-VDDAFYTLVREI  163 (191)
Q Consensus       147 ~~~~~-v~~l~~~i~~~~  163 (191)
                      ++|.| ++++|..+++..
T Consensus       162 k~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         162 LQSENSVRDIFHVATLAC  179 (182)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            99998 999999988854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.5e-36  Score=209.67  Aligned_cols=162  Identities=24%  Similarity=0.387  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+|+|..|||||||+.++....+...+.||....+...+.+++..+.+.+|||+|++.+..++..++..+|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999998889999887777777889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      ++++++++.+. .|...+...  .++.|+++|+||+|+...             .++.+++..++++.++ +|+||||++
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999995 565555443  357999999999998641             3678899999999996 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHhhh
Q psy11135        149 RMG-VDDAFYTLVREIKKDK  167 (191)
Q Consensus       149 ~~~-v~~l~~~i~~~~~~~~  167 (191)
                      +.+ ++++|..+........
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            885 9999999888766533

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1e-35  Score=206.36  Aligned_cols=184  Identities=31%  Similarity=0.519  Sum_probs=153.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            589999999999999999999998887777677663 3334555677778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+...  ....|+++|+||+|+.+ ..+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus        86 ~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          86 YDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999888664  35689999999999976 44577888889999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhcc--------ccCCCccccce
Q psy11135        161 REIKKDKMLRGKEKKKR--------GISGNKLKQCC  188 (191)
Q Consensus       161 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  188 (191)
                      +.+...+..+..+..+.        ..+.+++++||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         164 ELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            99987665544433332        33446678888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.4e-36  Score=204.18  Aligned_cols=159  Identities=34%  Similarity=0.567  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|+|||+|+.++..+.+...+.+|.+..+.....+++..+.+.+|||+|++++..++..++++++++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999998888888887666667788899999999999999999999999999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-----------ccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135         84 VNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-----------AVDMNQAQELAEQFNI-PFIKTSAKTRM  150 (191)
Q Consensus        84 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  150 (191)
                      ++++++|+.+ ..|+..+....  ++.|+++|+||+|+.+.           .+..++++.+++..++ +|+++||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            9999999998 68998887643  47999999999999653           3788999999999998 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREIK  164 (191)
Q Consensus       151 ~v~~l~~~i~~~~~  164 (191)
                      |++++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=8.9e-36  Score=205.09  Aligned_cols=179  Identities=32%  Similarity=0.480  Sum_probs=149.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|+|||||++++.++.+...+.++....+....... +..+.+.+|||||++++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999988888777766655555555 67788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-----ccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135         83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-----AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDA  155 (191)
Q Consensus        83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l  155 (191)
                      |++++++++.+. .|+..+...  .++.|+++|+||.|+...     .+..+++.+++..+++ +++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            999999999986 477666543  357899999999998652     3567888999999998 8999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135        156 FYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVLL  191 (191)
Q Consensus       156 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
                      |..+.+.+.......       .....+.|++|++|
T Consensus       159 f~~l~~~~~~~~~~~-------~~~~~~~~~~c~~~  187 (187)
T cd04132         159 FDTAIEEALKKEGKA-------IFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHhhhhhh-------hhccCCCCcccccC
Confidence            999999987654443       44555667777764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.7e-35  Score=203.83  Aligned_cols=186  Identities=35%  Similarity=0.532  Sum_probs=156.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|+++++|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999888766666665433 445667788888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++++++..+..|+..+..+. ....|+++|+||.|+.+ ..+..+++..+++..+++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998887653 34589999999999875 556778888899888999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135        162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL  191 (191)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
                      .+.+.... .+.+..+.......++||++.
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  188 (188)
T cd04125         160 LIIKRLEE-QELSPKNIKQQFKKKNNCFIN  188 (188)
T ss_pred             HHHHHhhc-CcCCccccccccccccCcccC
Confidence            99865433 344445566666688888874

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-35  Score=204.77  Aligned_cols=184  Identities=32%  Similarity=0.612  Sum_probs=153.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +||+++|++|||||||++++....+. ..+.++....+ .....+++..+.+.+|||||+.++...+..++..+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999988864 35556655333 34567788888999999999999999899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. +.+..++...+++.++++++++||++|.|++++|.+|.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 34789999999999964 55677888899999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhccc----cCCCccccce
Q psy11135        161 REIKKDKMLRGKEKKKRG----ISGNKLKQCC  188 (191)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  188 (191)
                      +.+.+....+....+.+-    ...++.++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         160 KELKHRKYEQPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHhccccCCCCcEEeccccCcccccCCCC
Confidence            999887655443333232    5566678888

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.9e-35  Score=204.33  Aligned_cols=162  Identities=30%  Similarity=0.568  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +.|+++|..|||||||++++..+.+...+.+|.+. .....+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999988888887763 34455678888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+.. +.+..+++.+++++. ++.|+++||++|.|++++|.++.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999877654 345799999999999965 677888888999885 78999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (202)
T cd04120         160 DDILKK  165 (202)
T ss_pred             HHHHHh
Confidence            888653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098|consensus

Probab=100.00  E-value=4.6e-36  Score=195.66  Aligned_cols=162  Identities=33%  Similarity=0.560  Sum_probs=150.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+|++++|+.|||||+|+.+++...+.+.++.|.+ +.-...+.++++.+++++|||+|++.+++.+..||+.+.++++|
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV   85 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV   85 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence            58999999999999999999999999999998888 44455678999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++.++|..+..|+..+..+. .+++.+++++||+|+.. +.++.++.++||+++|..++++||+++.|++++|..+.
T Consensus        86 ydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen   86 YDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             EEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            99999999999999999998753 56899999999999987 78999999999999999999999999999999999888


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      ..+..
T Consensus       165 ~~Iy~  169 (216)
T KOG0098|consen  165 KEIYR  169 (216)
T ss_pred             HHHHH
Confidence            88765

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-35  Score=202.29  Aligned_cols=160  Identities=26%  Similarity=0.406  Sum_probs=142.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .+||+++|+.|||||||++++..+.+...+.|+....+.....+++..+.+.+|||+|++.+..++..++++++++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999998888888887666666778899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135         83 AVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK  147 (191)
Q Consensus        83 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~  147 (191)
                      |++++++++.+ ..|+..+....  +..|+++|+||+|+.+             ..++.++++++++++++ +|+++||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 78988887653  5789999999999853             34888999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q psy11135        148 TRMG-VDDAFYTLVREIK  164 (191)
Q Consensus       148 ~~~~-v~~l~~~i~~~~~  164 (191)
                      +|++ ++++|..+++...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.9e-35  Score=199.45  Aligned_cols=162  Identities=58%  Similarity=1.007  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++||+++|.+|||||||++++..+.+...+.+++...+......++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            58999999999999999999998888777778887766667778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++.++++.+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999999987765567899999999999976 445667778888889999999999999999999999987


Q ss_pred             HHH
Q psy11135        162 EIK  164 (191)
Q Consensus       162 ~~~  164 (191)
                      .+.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.8e-35  Score=199.25  Aligned_cols=161  Identities=58%  Similarity=0.996  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++||+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||||++++...+..+++.++++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            47999999999999999999999888878888877666666778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887765556899999999999865 456677788888888899999999999999999999987


Q ss_pred             HH
Q psy11135        162 EI  163 (191)
Q Consensus       162 ~~  163 (191)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.5e-35  Score=197.59  Aligned_cols=161  Identities=83%  Similarity=1.238  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++||+++|++|||||||++++.++.+...+.++....+.....+++..+.+.+||++|++++..++..+++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            47999999999999999999999988778888877766666778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      |+++.+++..+..|+..+.......+.|+++|+||+|+.......+++..+++..+++++++||++|.|++++|+++.+.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999999999988887655568899999999999877777888888989899999999999999999999999865


Q ss_pred             H
Q psy11135        163 I  163 (191)
Q Consensus       163 ~  163 (191)
                      +
T Consensus       161 ~  161 (162)
T cd04138         161 I  161 (162)
T ss_pred             h
Confidence            4

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.6e-35  Score=204.58  Aligned_cols=163  Identities=30%  Similarity=0.453  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +||+++|++|||||||++++.+..+...+.++.+ +.+.....+++ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999988888888876 44444555554 568899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ||++++++++.+..|+..+.....  ..+.|+++|+||+|+.. +.+..++...+++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998877543  24568999999999974 667888899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy11135        159 LVREIKKD  166 (191)
Q Consensus       159 i~~~~~~~  166 (191)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=9.4e-35  Score=202.94  Aligned_cols=180  Identities=24%  Similarity=0.377  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++..+.+.. ..++.+..+..   .....+.+.+|||+|++.+..++..+++.++++++|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999988764 34555433222   12245678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------------------CccCHHHHHHHHHHcC-----
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------------------WAVDMNQAQELAEQFN-----  138 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~~~~~~~~~~~~~~-----  138 (191)
                      ++++++++.+..|+..+... ...+.|+++|+||+|+..                    +.+..+++..++++.+     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            99999999999988887653 345789999999999864                    5678889999999876     


Q ss_pred             ---------CCEEEeccCCCCCHHHHHHHHHHHHHhhhhhhhh-hhh-----ccccCCCccccce
Q psy11135        139 ---------IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK-EKK-----KRGISGNKLKQCC  188 (191)
Q Consensus       139 ---------~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~  188 (191)
                               ++|+++||++|.||+++|..+++.+.+-...+.. ...     +.+....++.+||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence                     6899999999999999999999888754433322 222     2333444566777

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087|consensus

Probab=100.00  E-value=2.5e-35  Score=196.13  Aligned_cols=168  Identities=33%  Similarity=0.504  Sum_probs=154.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .|||+++|++|+|||-|+.++...++.....+|.+ +.......++++.+..+||||+||++|+.....+++.+.+.++|
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllV   93 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV   93 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEE
Confidence            48999999999999999999999999888888888 45556678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++...+|+++..|+.+++.+ ..+++++++|+||+||.. +.+..++++.++...+..++++||.++.|++.+|+.++
T Consensus        94 YDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen   94 YDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             EechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence            9999999999999999999985 456899999999999988 77899999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhh
Q psy11135        161 REIKKDKMLRG  171 (191)
Q Consensus       161 ~~~~~~~~~~~  171 (191)
                      ..+......+.
T Consensus       173 ~~I~~~vs~k~  183 (222)
T KOG0087|consen  173 TEIYKIVSKKQ  183 (222)
T ss_pred             HHHHHHHHHHh
Confidence            99887655543

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.3e-34  Score=195.33  Aligned_cols=162  Identities=70%  Similarity=1.130  Sum_probs=144.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|++|||||||++++.+..+...+.++..+.+.....+++..+.+.+|||||++++...+..+++.+++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998887777787777666677788888889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++++++++.+..|...+.......+.|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.+.
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  160 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE  160 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHH
Confidence            999999999999998887765556789999999999976 4567778888899999999999999999999999999987


Q ss_pred             HHh
Q psy11135        163 IKK  165 (191)
Q Consensus       163 ~~~  165 (191)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00173      161 IRK  163 (164)
T ss_pred             Hhh
Confidence            653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.6e-34  Score=194.20  Aligned_cols=162  Identities=29%  Similarity=0.540  Sum_probs=142.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++++...+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988777777766444 33456788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+... ..++.|+++|+||+|+.. ..++.+++..+++..+++++++||++|.|++++|..+.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999887664 345789999999999976 45678889999999999999999999999999999998


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1e-34  Score=199.95  Aligned_cols=159  Identities=31%  Similarity=0.533  Sum_probs=137.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|++|||||||++++..+.+...+.++....+......++..+.+.+|||+|++++..++..++..++++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999999888888887766665666788888899999999999998989999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcC-CCEEEeccCCC
Q psy11135         85 NSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFN-IPFIKTSAKTR  149 (191)
Q Consensus        85 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~s~~~~  149 (191)
                      +++++++.+. .|+..+...  .++.|+++|+||+|+...             .+..+++..+++..+ ++|+++||++|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            9999999886 588777654  347899999999998652             245667778888877 68999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy11135        150 MGVDDAFYTLVREIKK  165 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~  165 (191)
                      .|++++|.+|.+.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3.8e-34  Score=199.86  Aligned_cols=164  Identities=33%  Similarity=0.587  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+. .....+.+ ++..+.+++|||+|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999998877766666653 33333444 4667889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++++++.+..|+..+.........|+++|+||+|+.. ..+..++...+++.++++++++|+++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999887665555678999999999976 5678888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9988765

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3e-34  Score=193.52  Aligned_cols=162  Identities=65%  Similarity=0.992  Sum_probs=143.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||+.++..++..+++.+|+++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            46899999999999999999999988877777877766666667888888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++..+++++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887755556889999999999976 44566778888888899999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=4.5e-34  Score=200.28  Aligned_cols=163  Identities=31%  Similarity=0.531  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|++++...+..+++.++++++|
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv   91 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV   91 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence            48999999999999999999999887766666666 33455667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|+.|.
T Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         92 YDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887643 35789999999999865 55677888999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       171 ~~i~~~  176 (216)
T PLN03110        171 LEIYHI  176 (216)
T ss_pred             HHHHHH
Confidence            988663

>KOG0093|consensus

Probab=100.00  E-value=4.5e-35  Score=183.91  Aligned_cols=166  Identities=29%  Similarity=0.541  Sum_probs=149.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+|++++|+..+|||||+.++.+..+...+.+|.+..+.. ++.-..+.+.+++|||+|+++++.++..++++++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            3699999999999999999999999988888888855544 344466789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++|.+|+..+..|...+..+ ...+.|+|+|+||||+.. +-++.+....++.++|..||++|++.+.|++.+|+.++
T Consensus       101 yDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            9999999999999999999887 456899999999999987 55788999999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      ..+.+....
T Consensus       180 ~~Ic~kmse  188 (193)
T KOG0093|consen  180 DIICDKMSE  188 (193)
T ss_pred             HHHHHHhhh
Confidence            988775544

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.8e-34  Score=194.49  Aligned_cols=161  Identities=48%  Similarity=0.891  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++||+++|.+|+|||||++++..+.+...+.++..........+++..+.+++|||||++++..++..++.++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            58999999999999999999999988777777776666667778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887755556899999999999865 455666778888888899999999999999999999987


Q ss_pred             HH
Q psy11135        162 EI  163 (191)
Q Consensus       162 ~~  163 (191)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.2e-34  Score=195.81  Aligned_cols=158  Identities=34%  Similarity=0.564  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++..+.+...+.|+.+..+.....+++..+.+.+|||+|++++...+..+++++|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999988888888877666566788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  148 (191)
                      ++++++++.+. .|+..+...  .++.|+++|+||+|+..             ..+..++++.+++..+ +.|+++||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            99999999997 587777653  24789999999999854             3467778888998887 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREI  163 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~  163 (191)
                      |.|++++|+.++...
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999988753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=7.4e-34  Score=194.42  Aligned_cols=163  Identities=33%  Similarity=0.557  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc----------CeEEEEEEEeCCChhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID----------GETALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      .+||+++|++|||||||++++....+...+.++.+..+ .....+.          +..+.+.+||+||++++...+..+
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF   83 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence            58999999999999999999999888777777665333 2223332          456789999999999999999999


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      ++++|++++|||+++++++..+..|+..+......++.|+++|+||+|+.+ ..+..+++.++++.++++++++||++|.
T Consensus        84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~  163 (180)
T cd04127          84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGT  163 (180)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            999999999999999999999999999887765556789999999999976 5677888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy11135        151 GVDDAFYTLVREIKK  165 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~  165 (191)
                      |++++|+.|.+.+.+
T Consensus       164 ~v~~l~~~l~~~~~~  178 (180)
T cd04127         164 NVEKAVERLLDLVMK  178 (180)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=8.2e-34  Score=191.97  Aligned_cols=161  Identities=32%  Similarity=0.538  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.++++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998777777766433 445667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCC----CCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDA----EEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      |+++++++..+..|+..+..+...    .+.|+++|+||+|+.. ..+..++...++...+++++++|++++.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999998776542    5789999999999974 56678888888888899999999999999999999


Q ss_pred             HHHHHHH
Q psy11135        158 TLVREIK  164 (191)
Q Consensus       158 ~i~~~~~  164 (191)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=5.9e-34  Score=199.90  Aligned_cols=164  Identities=28%  Similarity=0.527  Sum_probs=142.2

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +..+||+++|.+|||||||++++..+.+...+.++.+.. ....+..++..+.+.+|||+|++++..++..+++.+++++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            457999999999999999999999888887777777633 3344556777789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +|||+++++++..+..|+..+....  .+.|+++|+||+|+....+..++. .+++..+++|+++||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999887653  578999999999997656665555 7778888999999999999999999999


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      .+.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99887553

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=8.5e-34  Score=191.52  Aligned_cols=159  Identities=39%  Similarity=0.689  Sum_probs=139.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .+||+++|.+|||||||++++.+..+...+.++....+......+...+.+.+|||||++++...+..++..++++++||
T Consensus         1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            47999999999999999999999988777777777666666667778888999999999999998899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |++++++++.+..|+..+.....  .++.|+++|+||+|+.. ..+..+++..++..++++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887765432  25789999999999976 5677778888888889999999999999999999998


Q ss_pred             HH
Q psy11135        160 VR  161 (191)
Q Consensus       160 ~~  161 (191)
                      ++
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=9.3e-34  Score=190.77  Aligned_cols=159  Identities=42%  Similarity=0.754  Sum_probs=146.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc-cceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      ||+++|++|||||||++++.+..+...+.++. .+........++..+.+.+||++|++++..+...++..+|+++++||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999888888887 46667777889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++++++++.+..|+..+..... .+.|+++|+||.|+.. ..++.++++.++++++++|+++|++++.|+.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999987654 5689999999999986 7889999999999999999999999999999999999988


Q ss_pred             HH
Q psy11135        163 IK  164 (191)
Q Consensus       163 ~~  164 (191)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.3e-33  Score=189.79  Aligned_cols=162  Identities=36%  Similarity=0.684  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999998888777776443 34556788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+... ...+.|+++|+||+|+.. ..+..+++..++..++++++++|+++|.|++++|+++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999988764 345789999999999975 45677888889999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            88754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.1e-33  Score=190.27  Aligned_cols=161  Identities=28%  Similarity=0.421  Sum_probs=139.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      ||+++|.+|||||||++++..+.+...+.++.+..+ .....+++..+.+++|||||++++...+..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999998888888876444 3456678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC---ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      +++++++..+..|+..+.........|+++|+||+|+.+.   ....+++..++++++.+++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999988866544445789999999998652   2345667788888899999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=7.3e-34  Score=193.10  Aligned_cols=157  Identities=34%  Similarity=0.568  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||+.++..+.+...+.++....+.....+++..+.+.+|||+|++.+...+..+++++|++++|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999999888888888776666667788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      +++++++..+. .|+..+...  .++.|+++|+||+|+.+.             .+..+++..+++.++. +++++||++
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            99999999996 577766553  347999999999998542             3678889999999984 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVRE  162 (191)
Q Consensus       149 ~~~v~~l~~~i~~~  162 (191)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.7e-33  Score=189.24  Aligned_cols=158  Identities=31%  Similarity=0.538  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|+|||||++++..+.+...+.++.+.. ......+++..+.+.+||++|++++...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            589999999999999999999998877777776643 3455667787888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++++++.+..|+..+.... ..+.|+++|+||.|+.. ..+..+++..+++.++++|+++||++|.|++++|.+|.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            9999999999999998887643 34689999999999975 557888999999999999999999999999999999976


Q ss_pred             H
Q psy11135        162 E  162 (191)
Q Consensus       162 ~  162 (191)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3e-33  Score=189.02  Aligned_cols=161  Identities=39%  Similarity=0.707  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+.. .......++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            5899999999999999999999888766666666533 344556677888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... .++.|+++|+||+|+.. ..+..+++..+++.++++++++|+++|.|++++|.+|.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999887653 35789999999999865 55777888999999999999999999999999999999


Q ss_pred             HHHH
Q psy11135        161 REIK  164 (191)
Q Consensus       161 ~~~~  164 (191)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.7e-33  Score=188.42  Aligned_cols=161  Identities=30%  Similarity=0.576  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++...+..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999988777777766433 334455677788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++++++.+..|+..+.... ....|+++|+||+|+.+ +.+..++..++++.++++++++||+++.|++++|+++.+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999998886543 34689999999999976 446678888899999999999999999999999999988


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+.+
T Consensus       161 ~~~~  164 (165)
T cd01865         161 IICD  164 (165)
T ss_pred             HHHh
Confidence            7643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.6e-33  Score=192.50  Aligned_cols=163  Identities=28%  Similarity=0.487  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +||+++|.+|+|||||++++..+.+.. .+.++.+..+ .....+++..+.+.+||++|++++..++..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999888753 5666666444 34567788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-----CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++++++.+..|+..+...  .++.|+++|+||+|+..     ..+..+++..++...+++++++|++++.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999888663  34689999999999854     2445667788888889999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy11135        157 YTLVREIKKDKM  168 (191)
Q Consensus       157 ~~i~~~~~~~~~  168 (191)
                      ++|.+.+.+...
T Consensus       159 ~~i~~~~~~~~~  170 (193)
T cd04118         159 QKVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHHhcc
Confidence            999999876543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=4.6e-33  Score=188.82  Aligned_cols=161  Identities=34%  Similarity=0.554  Sum_probs=139.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|++|||||||++++....+...+.++.+.. ......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            46899999999999999999999888776666665533 34456678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~  156 (191)
                      +||++++++++.+..|...+.....   ..+.|+++|+||+|+....+..+++++++++.+ .+++++||+++.|+.++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence            9999999999999999988766432   246899999999999877788889999999888 489999999999999999


Q ss_pred             HHHHHH
Q psy11135        157 YTLVRE  162 (191)
Q Consensus       157 ~~i~~~  162 (191)
                      +.+++.
T Consensus       164 ~~~~~~  169 (170)
T cd04116         164 EEAVRR  169 (170)
T ss_pred             HHHHhh
Confidence            998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0091|consensus

Probab=100.00  E-value=5.5e-34  Score=182.12  Aligned_cols=165  Identities=31%  Similarity=0.547  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEE-EEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQV-VIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .++.+|+|+.-+|||+|++.+..+.++.-.+||.+..+ ...+ .-++..+++++|||+|+++++++++.++++.-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            58999999999999999999999999888888887433 2222 246888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCC-CCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAE-EVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +||.+|.+||+.+..|..+...+...+ +.-+.+|++|+|+.. ++++.++++.+++.+|..|+++|+++|.|+++.|..
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            999999999999999999987777744 455789999999987 889999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy11135        159 LVREIKKDK  167 (191)
Q Consensus       159 i~~~~~~~~  167 (191)
                      |.+.+...-
T Consensus       168 laqeIf~~i  176 (213)
T KOG0091|consen  168 LAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHH
Confidence            998886543

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.7e-33  Score=190.77  Aligned_cols=160  Identities=23%  Similarity=0.409  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|..|||||||++++..+.+...+.+|.+..+ .....+++..+.+.+||++|++++...+..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999998888888887443 456778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC------CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST------WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      |+++++++..+..|+..+.... ....| ++|+||+|+..      .....++..++++..+++++++||++|.|++++|
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf  158 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF  158 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999887643 23466 68899999852      1123456778888999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      +++.+.+.+
T Consensus       159 ~~l~~~l~~  167 (182)
T cd04128         159 KIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHh
Confidence            999988864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=5e-33  Score=188.28  Aligned_cols=162  Identities=56%  Similarity=0.949  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++||+++|.+|||||||++++.++.+...+.++....+.....+++..+.+.+|||||++++..++..+++.+++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            58999999999999999999999888777778877666666778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |++++++++.+..|...+.......+.|+++++||.|+.. .....++...+++.++ ++++++||+++.|++++|+++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887655556899999999999875 4567777888888888 7999999999999999999998


Q ss_pred             HHHH
Q psy11135        161 REIK  164 (191)
Q Consensus       161 ~~~~  164 (191)
                      ..+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=192.48  Aligned_cols=164  Identities=30%  Similarity=0.511  Sum_probs=136.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++||+++|++|||||||++++.+..+. .+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            689999999999999999999987763 44455543 3334456677788899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHH-HHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSY-REQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||+++++++..+..+ ...+..+....+.|+++|+||+|+.. ..+..++...++...+++|+++||+++.|++++|++|
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  172 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL  172 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999764 44444333345689999999999975 4567778888888899999999999999999999999


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      ...+.+..
T Consensus       173 ~~~~~~~~  180 (211)
T PLN03118        173 ALKIMEVP  180 (211)
T ss_pred             HHHHHhhh
Confidence            99997654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.4e-32  Score=186.43  Aligned_cols=162  Identities=35%  Similarity=0.588  Sum_probs=140.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-HHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-AMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i   79 (191)
                      +.+||+++|++|||||||++++....+...+.++.+ +.......+++..+.+.+||++|++++. .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            368999999999999999999998887766666655 3334456678888899999999999886 57888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCC---CCCHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKT---RMGVDDA  155 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~l  155 (191)
                      +|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++.++++..+++++++||++   +.+++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            9999999999999999999888766567899999999999875 55677888899999999999999998   8999999


Q ss_pred             HHHHHHHH
Q psy11135        156 FYTLVREI  163 (191)
Q Consensus       156 ~~~i~~~~  163 (191)
                      |..+.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3e-32  Score=184.46  Aligned_cols=162  Identities=33%  Similarity=0.581  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++.+..+...+.++.+.. .......++....+.+||+||++++......+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999988777666665533 334456777778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... .++.|+++|+||.|+.. ..+..+++..++...+++++++|++++.|++++|.++.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999887653 36789999999999974 56788888889999999999999999999999999998


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            88754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.5e-32  Score=184.35  Aligned_cols=160  Identities=36%  Similarity=0.567  Sum_probs=138.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+. ........++..+.+.+||+||+.++...+..+++.+++++++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            479999999999999999999988876666666653 3345566778778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|++|.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998887643 34689999999999876 55677788888888899999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.3e-32  Score=184.22  Aligned_cols=162  Identities=59%  Similarity=1.024  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|++|||||||++++....+...+.++....+......++..+.+.+||+||+.++...+..+++.+++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999888888888777777777788888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++++.++..+..|+..+.......+.|+++|+||+|+.. .....++...+.+.++++++++|++++.|++++|+++.+.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE  160 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            999999999999998888765556899999999999976 4567777888888899999999999999999999999887


Q ss_pred             HHh
Q psy11135        163 IKK  165 (191)
Q Consensus       163 ~~~  165 (191)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04139         161 IRQ  163 (164)
T ss_pred             HHh
Confidence            753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9.5e-33  Score=186.42  Aligned_cols=159  Identities=26%  Similarity=0.497  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++....+...+.++.+. ........++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988877667776653 33344456777888999999999998888889999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      |+++++++..+..|+..+.....  +.|+++|+||+|+....+.. +..++++..+++++++||++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999877543  79999999999997544443 3456777778899999999999999999999988


Q ss_pred             HHh
Q psy11135        163 IKK  165 (191)
Q Consensus       163 ~~~  165 (191)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.5e-32  Score=184.92  Aligned_cols=157  Identities=34%  Similarity=0.605  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc--CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID--GETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +||+++|.+|+|||||++++.+..+...+.++.+..+ .....++  +..+.+.+|||||++++...+..+++.++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999888777777765433 3344455  677889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+...  ..+.|+++|+||+|+.. ..+..+++..+++.++++++++|++++.|++++|++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999887653  35789999999999965 4567788889999999999999999999999999998


Q ss_pred             HHH
Q psy11135        160 VRE  162 (191)
Q Consensus       160 ~~~  162 (191)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0395|consensus

Probab=100.00  E-value=5.6e-33  Score=190.30  Aligned_cols=167  Identities=57%  Similarity=0.969  Sum_probs=157.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++++||+++|.+|+|||+|..++.+..+...|.||..+.+.....+++..+.+.++||+|++++..+...++.+.+++++
T Consensus         1 ~~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    1 LREYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CCceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||++++..||+.+..++..+.+.......|+++|+||+|+.. +.++.++++.++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999996655666789999999999988 8899999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      .+.+...+
T Consensus       161 ~r~~~~~~  168 (196)
T KOG0395|consen  161 VREIRLPR  168 (196)
T ss_pred             HHHHHhhh
Confidence            99887633

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3.7e-32  Score=183.50  Aligned_cols=160  Identities=30%  Similarity=0.535  Sum_probs=137.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|++|+|||||++++....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988877766666553 333455677777889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~  158 (191)
                      +||+++++++..+..|+..+... ...+.|+++|+||+|+.. +....+++..+++..+. .++++|+++|.|++++|+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999988663 345789999999999975 45677888889998886 6899999999999999999


Q ss_pred             HHHH
Q psy11135        159 LVRE  162 (191)
Q Consensus       159 i~~~  162 (191)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            8865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=3.1e-32  Score=186.40  Aligned_cols=164  Identities=41%  Similarity=0.683  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +.||+++|.+|+|||||++++....+...+.++....+......++..+.+.+||+||+.++...+..++..+++++++|
T Consensus         1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            36899999999999999999998888777777776655666677777888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++.+++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++|++++.|+.+++.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887765556789999999999875 445666677888888899999999999999999999998


Q ss_pred             HHHhh
Q psy11135        162 EIKKD  166 (191)
Q Consensus       162 ~~~~~  166 (191)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            77643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.8e-32  Score=183.38  Aligned_cols=158  Identities=31%  Similarity=0.543  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999998877666666553 33344567787888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++++++..+..|+..+... ..++.|+++|+||+|+.. ..+..+++..+++..+++++++|++++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999887654 346789999999999975 567788889999999999999999999999999999887


Q ss_pred             H
Q psy11135        162 E  162 (191)
Q Consensus       162 ~  162 (191)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            5

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=3e-32  Score=183.18  Aligned_cols=159  Identities=26%  Similarity=0.455  Sum_probs=134.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|.+|||||||++++....+...+.++.. +........++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999998887666655544 333444566788888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      |++++.++..+..|+..+...  .++.|+++|+||+|+...  ..++...+++..+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999888653  346899999999998532  2344566777788999999999999999999999988


Q ss_pred             HHhh
Q psy11135        163 IKKD  166 (191)
Q Consensus       163 ~~~~  166 (191)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.1e-32  Score=187.71  Aligned_cols=157  Identities=36%  Similarity=0.601  Sum_probs=137.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   85 (191)
                      |+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||||++++..++..++..+|+++++||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999998888878777766666778888889999999999999999999999999999999999


Q ss_pred             ChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135         86 SMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKTRM  150 (191)
Q Consensus        86 ~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  150 (191)
                      ++++++.+. .|+..+...  .++.|+++|+||+|+...             .++.+++..+++..+. +++++||+++.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999986 588777654  357899999999998641             2677788889999996 99999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREIK  164 (191)
Q Consensus       151 ~v~~l~~~i~~~~~  164 (191)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999988764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.7e-32  Score=183.45  Aligned_cols=153  Identities=25%  Similarity=0.455  Sum_probs=129.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|+.|||||||+.++..+.+...+.++.. .+...+.+++..+.+.+||++|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            5899999999999999999998887666655433 3445677888888899999999975     345678999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---CCccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +++++++..+..|+..+......++.|+++|+||.|+.   .+.++.+++.+++++. +++|++|||++|.|++++|..+
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            99999999999999988776545678999999999984   3567888888999876 4899999999999999999998


Q ss_pred             HHH
Q psy11135        160 VRE  162 (191)
Q Consensus       160 ~~~  162 (191)
                      .+.
T Consensus       155 ~~~  157 (158)
T cd04103         155 AQK  157 (158)
T ss_pred             Hhh
Confidence            754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.7e-32  Score=188.98  Aligned_cols=156  Identities=30%  Similarity=0.456  Sum_probs=127.7

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCccCCcc--ceEEEE--------EEEcCeEEEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTI-QLIQNH-----FVDEYDPTIE--DSYRKQ--------VVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      .+||+++|..|||||||+. ++.+..     +...+.||.+  +.+...        ..+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999995 565443     3455667764  222221        24688899999999999875  3


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC--------------------Ccc
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST--------------------WAV  125 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~  125 (191)
                      ....+++++|++++|||++++++++.+. .|+..+....  ++.|+++|+||+|+..                    +.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            4566899999999999999999999997 5888776543  4789999999999863                    567


Q ss_pred             CHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        126 DMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      +.++++.+++.++++|+++||++|.|++++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8899999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=7.5e-32  Score=181.77  Aligned_cols=161  Identities=37%  Similarity=0.657  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|+++++|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            589999999999999999999888766665655533 3345566777788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++++++.+..|+..+..+.. ++.|+++|+||+|+.. .....+.+..+++..+++++++|+.++.|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 5799999999999876 556778888899999999999999999999999999998


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8754

Rab GTPases are implicated in vesicle trafficking.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.6e-32  Score=185.25  Aligned_cols=160  Identities=39%  Similarity=0.730  Sum_probs=136.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-HHHHHhhcccCCEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-SAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~i~v~d   83 (191)
                      ||+++|++|||||||++++....+...+.++....+.....+++..+.+.+||+||+... ......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999998887777777776555666778888888999999998852 3456677889999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTLV  160 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~i~  160 (191)
                      ++++++++.+..|+..+..... ..+.|+++|+||+|+.. ..+..+++..+++..+++|+++|++++. |++++|..+.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~  160 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC  160 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence            9999999999999888876543 45799999999999864 5677888889999999999999999995 9999999998


Q ss_pred             HHHH
Q psy11135        161 REIK  164 (191)
Q Consensus       161 ~~~~  164 (191)
                      +.+.
T Consensus       161 ~~~~  164 (165)
T cd04146         161 REVR  164 (165)
T ss_pred             HHHh
Confidence            8765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=187.17  Aligned_cols=163  Identities=32%  Similarity=0.581  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|+|||||++++....+...+.++....+ .....+++..+.+.+|||+|++.+...+..++..+|++++|
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv   85 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999887766666665333 44566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... ....|+++|+||+|+.. +.+..++.+++++.++++++++|++++.|++++|.++.
T Consensus        86 ~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999988776543 35789999999999976 46788889999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       165 ~~~~~~  170 (210)
T PLN03108        165 AKIYKK  170 (210)
T ss_pred             HHHHHH
Confidence            888654

>KOG0088|consensus

Probab=100.00  E-value=1.2e-33  Score=179.79  Aligned_cols=168  Identities=30%  Similarity=0.513  Sum_probs=148.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .|||+++|..=+|||||+-+++...+.....+|.. .+......+.+....+.||||+|++++..+.+.|++.++++++|
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV   92 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV   92 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence            68999999999999999999998888666555554 34455566778888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++|.+||..++.|..+++.. ....+-+++|+||+|+.. +.++.+++..+++..|+.|+++||+++.|+.++|+.+.
T Consensus        93 yDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   93 YDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            9999999999999999999874 345688999999999987 78999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhh
Q psy11135        161 REIKKDKMLRG  171 (191)
Q Consensus       161 ~~~~~~~~~~~  171 (191)
                      ..+.+....++
T Consensus       172 ~~MiE~~s~~q  182 (218)
T KOG0088|consen  172 AKMIEHSSQRQ  182 (218)
T ss_pred             HHHHHHhhhcc
Confidence            98887664443

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=6.8e-32  Score=181.52  Aligned_cols=159  Identities=33%  Similarity=0.583  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+.....++....+ .....+++..+.+.+||+||++.+......+++.+|+++++|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999998887665666665433 333456777788999999999999888899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      |+++++++..+..|+..+..+....+.|+++|+||+|+.......++...++...+++++++|+++|.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            99999999999999998888766778999999999999877778888889999999999999999999999999998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=5.4e-32  Score=190.23  Aligned_cols=164  Identities=34%  Similarity=0.587  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcc-cCCEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMR-TGEGFLL   80 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~   80 (191)
                      +||+++|++|||||||++++..+.+. ..+.++.+ +.......+++..+.+.+||+||++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 56666654 4555667788888889999999998  334455566 8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887755456799999999999865 5567777888898889999999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy11135        160 VREIKKDKML  169 (191)
Q Consensus       160 ~~~~~~~~~~  169 (191)
                      .+.+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9998754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=6.1e-32  Score=192.21  Aligned_cols=161  Identities=39%  Similarity=0.622  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++..+.+...+.++..+.....+.+++..+.+.+|||+|++.+...+..++..+|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999888888888877666777888989999999999999998888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEEecCCCCC-CccCHHHHHHHHHH-cCCCEEEeccCCCCCHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVK--------DAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~  153 (191)
                      +++.++++.+..|+..+....        ...+.|+++|+||+|+.. ..+..+++.++... .+++++++||+++.|++
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~  160 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD  160 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence            999999999999988886531        224789999999999975 56777777777654 46789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11135        154 DAFYTLVREIK  164 (191)
Q Consensus       154 ~l~~~i~~~~~  164 (191)
                      ++|++|...+.
T Consensus       161 elf~~L~~~~~  171 (247)
T cd04143         161 EMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHhc
Confidence            99999998663

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=3.7e-32  Score=185.05  Aligned_cols=158  Identities=35%  Similarity=0.567  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|++|+|||||++++..+.+...+.++....+.....+++..+.+.+|||||++.+...+..++..+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999888777777776666667788888889999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      +++++++..+. .|...+...  .++.|+++|+||+|+.+.             .++.+++..+++..++ +++++||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            99999999886 566666543  467999999999998542             4667788889999986 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREI  163 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~  163 (191)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5e-32  Score=186.99  Aligned_cols=155  Identities=26%  Similarity=0.493  Sum_probs=135.2

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh
Q psy11135          9 VGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM   87 (191)
Q Consensus         9 ~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (191)
                      +|..|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||+|++++..++..++++++++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            59999999999999998888777777776 34445566788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135         88 KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus        88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      +++..+..|+..+....  .+.|+++|+||+|+....+..+. ..+++..++.|+++||++|.|++++|.+|.+.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999887753  47999999999999765565544 467788899999999999999999999999988664

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0095|consensus

Probab=100.00  E-value=1.4e-32  Score=173.39  Aligned_cols=163  Identities=32%  Similarity=0.520  Sum_probs=147.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -|||+++|..|+|||.|++++.++-++.....|.+ +..-.+..+++..+++++|||+|++++++++..+++.+++++++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            37999999999999999999999999888777777 66677888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++-..+|+.+-+|+.++..+.. .+.--|+|+||+|+.+ ++++.+.+++|++.....|+++||++.+|++.+|..+.
T Consensus        87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            999999999999999999998854 3567799999999988 47788888999999888999999999999999999988


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      ..+...
T Consensus       166 ~rli~~  171 (213)
T KOG0095|consen  166 CRLISE  171 (213)
T ss_pred             HHHHHH
Confidence            777543

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.6e-31  Score=180.06  Aligned_cols=160  Identities=33%  Similarity=0.575  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++||+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999877656666554 3345667888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++.....|+..+.... .+..|+++++||+|+.. .....++...++...+++++++|+++|.|+++++++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999887653 36789999999999874 56677788888999999999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.2e-31  Score=180.23  Aligned_cols=158  Identities=30%  Similarity=0.533  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+||+||+..+...+..+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999887666666555 344555667777788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+. ......++...+++..+++++++|++++.|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998876542 2368999999999994 4567888888899898999999999999999999999976


Q ss_pred             H
Q psy11135        162 E  162 (191)
Q Consensus       162 ~  162 (191)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            4

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=5.7e-32  Score=183.93  Aligned_cols=156  Identities=34%  Similarity=0.569  Sum_probs=136.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +|++++|++|+|||||+.++....+...+.++..+.+.....+++..+.+.+||+||+.++...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999998888888888776666677788888889999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      ++++++++.+. .|+..+...  .++.|+++|+||+|+..             ..+..+++..+++..+. +++++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999885 577777643  34689999999999853             35677788999999987 899999999


Q ss_pred             CCCHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVR  161 (191)
Q Consensus       149 ~~~v~~l~~~i~~  161 (191)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.4e-31  Score=185.05  Aligned_cols=164  Identities=30%  Similarity=0.435  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhH--------HHHHHhhccc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEY--------SAMRDQYMRT   74 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~   74 (191)
                      +||+++|.+|||||||++++.++.+...+.|++... +.....+++..+.+.+|||||...+        .......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999988877777777533 3344567888888999999996532        1123445789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC-CccCHHHHHHHHH-HcCCCEEEeccCCCC
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST-WAVDMNQAQELAE-QFNIPFIKTSAKTRM  150 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  150 (191)
                      +|++++|||++++++++.+..|+..+....  ...+.|+++|+||+|+.. +.+..++.+.+++ .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654  246789999999999965 3456666666654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy11135        151 GVDDAFYTLVREIKKDK  167 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~  167 (191)
                      |++++|+.++..+..+.
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998776433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.8e-31  Score=182.93  Aligned_cols=172  Identities=22%  Similarity=0.364  Sum_probs=134.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.+||+++|.+|||||||++++....+... .++.+... ...... ++..+.+.+|||||++++...+..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            679999999999999999999998876544 34444222 222222 445678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH--H----cCCCEEEeccCCCCCHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE--Q----FNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~----~~~~~~~~s~~~~~~v~  153 (191)
                      +|||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++...+..  .    .+++++++||+++.|++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN-ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc-cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999988888888877655556799999999999864 334444444432  1    12468899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhh
Q psy11135        154 DAFYTLVREIKKDKMLRGKEKK  175 (191)
Q Consensus       154 ~l~~~i~~~~~~~~~~~~~~~~  175 (191)
                      +++++|.+.+.+.+..++.+++
T Consensus       160 ~l~~~l~~~l~~~~~~~~~~~~  181 (183)
T cd04152         160 EGLEKLYEMILKRRKMLRQQKK  181 (183)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhh
Confidence            9999999999877766666554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=3e-31  Score=178.87  Aligned_cols=158  Identities=35%  Similarity=0.509  Sum_probs=133.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCccceE-EEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIEDSY-RKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +||+++|++|||||||++++...  .+...+.++.+..+ ......+ +..+.+.+|||||+..+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  46677777775333 3334443 56788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++||+++++++..+..|+..+....  .+.|+++|+||+|+.+ ..+...+.+.++...+++++++|+.++.|++++|+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999998887643  4689999999999965 456666677788888899999999999999999999


Q ss_pred             HHHHH
Q psy11135        159 LVREI  163 (191)
Q Consensus       159 i~~~~  163 (191)
                      +.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd00876 Ras Ras family

Probab=100.00  E-value=3.1e-31  Score=178.00  Aligned_cols=158  Identities=61%  Similarity=1.030  Sum_probs=141.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|++|||||||++++.+..+...+.++...........++..+.+.+||+||+..+...+..+++.+|+++++||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999888888888887766666677777788899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++++++..+..|+..+.........|+++|+||+|+.. .....+++..+++.++++++++|++++.|+++++++|.+.
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            99999999999999888765546899999999999987 6677788889999999999999999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=6.2e-31  Score=178.62  Aligned_cols=163  Identities=34%  Similarity=0.594  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|||||||++++.+..+...+.++.. +.......+++..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999998887666666655 333445667888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~~  157 (191)
                      |+++++++..+..|...+.....   ..+.|+++|+||+|+.. .....++...+.+..+ ++++++|+++|.|++++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888877655433   33789999999999984 5567778888888887 7999999999999999999


Q ss_pred             HHHHHHHhh
Q psy11135        158 TLVREIKKD  166 (191)
Q Consensus       158 ~i~~~~~~~  166 (191)
                      +|.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999888765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=8e-31  Score=176.33  Aligned_cols=159  Identities=33%  Similarity=0.621  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|+|||||++++.+..+...+.++... .........+..+.+.+||+||+..+...+..+++.+|+++++|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            68999999999999999999998876655555543 33444556677778999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++++++..+..|+..+..... .+.|+++|+||+|+.. ..+..++..++++..+++++++|++++.|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877543 3789999999999975 456677788888889999999999999999999999987


Q ss_pred             HH
Q psy11135        162 EI  163 (191)
Q Consensus       162 ~~  163 (191)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            64

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=8.8e-31  Score=181.61  Aligned_cols=160  Identities=38%  Similarity=0.599  Sum_probs=135.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|.+|||||||++++....+...+.++........+.+.+..+.+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999988877777776655555667778778899999999999988888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--CccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--WAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      +++++++.+..|+..+.......+.|+++|+||+|+..  ..+..++..+... .++.+++++|+++|.|++++|++|.+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999998888766656799999999999865  3344444444433 55678999999999999999999999


Q ss_pred             HHH
Q psy11135        162 EIK  164 (191)
Q Consensus       162 ~~~  164 (191)
                      .+.
T Consensus       161 ~~~  163 (198)
T cd04147         161 QAN  163 (198)
T ss_pred             Hhh
Confidence            875

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0086|consensus

Probab=100.00  E-value=3.7e-31  Score=167.54  Aligned_cols=161  Identities=34%  Similarity=0.556  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +|++++|+.|.|||.|+.++....+..+...|.+..+. ..+.+.++.+++++|||+|++++++....|++.+.+.++||
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY   89 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   89 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence            79999999999999999999999987777777775443 34567888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++.++|+.+..|+...+.. ..+++-+++++||.|+.+ ++++..++..|+.+..+.++++|+++|+|+++.|-...+
T Consensus        90 D~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen   90 DITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             eccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence            999999999999999998774 456788999999999987 789999999999999999999999999999999987666


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+..
T Consensus       169 tIl~  172 (214)
T KOG0086|consen  169 TILN  172 (214)
T ss_pred             HHHH
Confidence            6643

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=9e-31  Score=180.04  Aligned_cols=173  Identities=33%  Similarity=0.546  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      .||+++|+.|+|||||++++....+...+.++....+.....+++....+.+||++|++.+.......+..+++++++|+
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988776666666666666566678878889999999998887777777889999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-----------CccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-----------WAVDMNQAQELAEQFNI-PFIKTSAKTRM  150 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  150 (191)
                      +++.+++..+. .|+..+....  ++.|+++|+||+|+..           ..+..++...+++..+. +++++||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            99999999986 5777776532  4699999999999853           23456778888999985 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccccceec
Q psy11135        151 GVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVL  190 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (191)
                      |++++|+++.+.+...+.            +++--+||.+
T Consensus       160 ~v~~~f~~l~~~~~~~~~------------~~~~~~~~~~  187 (187)
T cd04129         160 GVDDVFEAATRAALLVRK------------SEPGAGCCII  187 (187)
T ss_pred             CHHHHHHHHHHHHhcccC------------cccccCcccC
Confidence            999999999987755332            2344688875

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=3.9e-31  Score=178.79  Aligned_cols=155  Identities=17%  Similarity=0.261  Sum_probs=122.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|.+|||||||++++....+.. +.++.+.... .  +....+.+.+|||||++++...+..+++.+|++++|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            67899999999999999999998766543 4455553332 2  223456799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++.++..+..|+..+.......+.|+++|+||+|+.. .+..+++.++...     ..++++++||++|.|++++|
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~  162 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD-AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  162 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc-CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence            99999999999988887776533335689999999999865 3455666554321     22468999999999999999


Q ss_pred             HHHHH
Q psy11135        157 YTLVR  161 (191)
Q Consensus       157 ~~i~~  161 (191)
                      ++|.+
T Consensus       163 ~~l~~  167 (168)
T cd04149         163 TWLSS  167 (168)
T ss_pred             HHHhc
Confidence            99864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.5e-31  Score=177.91  Aligned_cols=161  Identities=24%  Similarity=0.321  Sum_probs=135.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.+||+++|.+|||||||++++.+..+. ..+.+|....+. ....+++..+.+.+||++|++.+...+..++..+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999999999887 788888775543 44667888788999999999998888888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~  157 (191)
                      +|||++++++++.+..|+..+..   ..+.|+++|+||+|+.+ ......+..++++.+++ .++++||+++.|++++|+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            99999999999988888875532   23689999999999865 33334556778888887 479999999999999999


Q ss_pred             HHHHHHHh
Q psy11135        158 TLVREIKK  165 (191)
Q Consensus       158 ~i~~~~~~  165 (191)
                      .|.+.+..
T Consensus       160 ~l~~~~~~  167 (169)
T cd01892         160 KLATAAQY  167 (169)
T ss_pred             HHHHHhhC
Confidence            99987753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0393|consensus

Probab=99.98  E-value=6.3e-32  Score=181.31  Aligned_cols=165  Identities=38%  Similarity=0.589  Sum_probs=150.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+|++++|+.++|||+|+..+..+.++..|.||..+.+.....++ ++.+.+.+|||+|+++|+.++...+..+|++++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            5789999999999999999999999999999999999999999995 999999999999999999988888999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEec
Q psy11135         81 VFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s  145 (191)
                      ||++.++++++++ .+|+.++.+++  ++.|+++|++|.|++.             ..+..+++..++++.| ..|++||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999997 57888888865  7899999999999974             2567888999999999 5899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                      |++..|++++|+..+........
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999988887776554

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.98  E-value=3e-30  Score=175.75  Aligned_cols=158  Identities=33%  Similarity=0.577  Sum_probs=133.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      .||+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||+|++++...+...+..+|+++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999888778888776666667788888889999999999998888888999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      ++++++++.+. .|...+...  ..+.|+++|+||+|+...             .+...+.+++++..+. +++++||++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            99999998885 466666553  347899999999998542             2345677788888774 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREI  163 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~  163 (191)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=2e-30  Score=177.21  Aligned_cols=156  Identities=17%  Similarity=0.318  Sum_probs=122.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|..|||||||++++...++.. +.||.+.... .  ++...+.+.+||+||++++..++..+++++|++++|
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            57899999999999999999998777653 4556553332 2  333456799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--------CEEEeccCCCCCHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--------PFIKTSAKTRMGVD  153 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~v~  153 (191)
                      ||+++++++.....++..+......++.|+++|+||+|+... ...+   ++.+.+++        .++++||++|+|+.
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-~~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAA---EITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-CCHH---HHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999988887777654333357899999999998753 3333   33444443        35689999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887754

>KOG0081|consensus

Probab=99.98  E-value=4.9e-32  Score=172.54  Aligned_cols=166  Identities=31%  Similarity=0.510  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEE---------cCeEEEEEEEeCCChhhHHHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVI---------DGETALLDILDTAGQEEYSAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~D~~g~~~~~~~~~~~~~   73 (191)
                      +|.+.+|+.|+|||+++.++..+.+......|.+.. ..+...+         .+..+.+++|||+|++++++++..+++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            466789999999999999999999888777777633 2333332         234577899999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      .+-+++++||+++..||.+++.|+.++.......+..+++.+||+|+.+ +.++.+++.++++++|+|||++||-+|.|+
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv  169 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV  169 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence            9999999999999999999999999998777777888999999999988 668889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy11135        153 DDAFYTLVREIKKDKML  169 (191)
Q Consensus       153 ~~l~~~i~~~~~~~~~~  169 (191)
                      ++..+.++..+.++-..
T Consensus       170 ~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  170 EKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988888765444

>cd00154 Rab Rab family

Probab=99.97  E-value=9.3e-30  Score=170.34  Aligned_cols=156  Identities=36%  Similarity=0.650  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|++|+|||||++++.+..+...+.++... ........++....+.+||+||+..+...+..+++++|++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999877765555553 33445556677788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+++++++..+..|+..+.... ..+.|+++++||+|+. ......++...++..++++++++|++++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999998887753 2568999999999997 566778888899999999999999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.9e-30  Score=175.73  Aligned_cols=158  Identities=18%  Similarity=0.308  Sum_probs=126.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|.+|||||||++++.+..+.. +.+|.+.... .  ++...+.+.+||+||+.++...+..++..+|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999887643 4555543332 2  333456689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC------CCEEEeccCCCCCHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN------IPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++++++..+..|+..+.......+.|+++|+||+|+.. .+..++...+++..+      +.++++||++|.|++++|++
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG-ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc-CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            99999999999988887543345689999999999864 456676766654322      26789999999999999999


Q ss_pred             HHHHHHhhh
Q psy11135        159 LVREIKKDK  167 (191)
Q Consensus       159 i~~~~~~~~  167 (191)
                      |.+.+.+..
T Consensus       156 l~~~~~~~~  164 (169)
T cd04158         156 LSRQLVAAG  164 (169)
T ss_pred             HHHHHhhcc
Confidence            998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=2.1e-29  Score=170.66  Aligned_cols=160  Identities=31%  Similarity=0.520  Sum_probs=134.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++|+++|++|||||||++++....+...+.++.+ +.......+++..+.+.+||+||+..+...+..++..+|+++++
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   86 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT   86 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999998776655555544 33344556778778899999999999999889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++.+++..+..|+..+... ...+.|.++|+||+|+.. .++..+....+.+....+++++|+++|.|++++|++|.
T Consensus        87 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          87 YDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999998998877654 334689999999999875 55666667788887778999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=2e-30  Score=173.93  Aligned_cols=153  Identities=17%  Similarity=0.289  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++..+.+. .+.|+.+.... .  +....+.+.+||+||++++...+..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999877765 35566554332 2  22345668999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHH----HHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELA----EQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++++.++..+..++..+.........|+++++||+|+.+. ...++. ..+.    ...++.++++||++|.|++++|++
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA-MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC-CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            9999999999888877755333346899999999998652 222232 2221    112345789999999999999999


Q ss_pred             HHH
Q psy11135        159 LVR  161 (191)
Q Consensus       159 i~~  161 (191)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.7e-30  Score=175.17  Aligned_cols=157  Identities=18%  Similarity=0.269  Sum_probs=120.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|.+|||||||++++..+.+. .+.||.+.... ....  ..+.+.+||+||++++...+..++++++++++|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            4799999999999999999999876653 34566553332 2223  346689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++++++....++..+.......+.|+++|+||.|+... ...++......     ...+.++++||++|+|++++|
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  166 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL  166 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999999988888765333356899999999998652 23333222211     112346789999999999999


Q ss_pred             HHHHHHH
Q psy11135        157 YTLVREI  163 (191)
Q Consensus       157 ~~i~~~~  163 (191)
                      ++|...+
T Consensus       167 ~~l~~~~  173 (175)
T smart00177      167 TWLSNNL  173 (175)
T ss_pred             HHHHHHh
Confidence            9987764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.6e-30  Score=174.83  Aligned_cols=159  Identities=21%  Similarity=0.307  Sum_probs=121.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++..+.+.. +.+|.+..+. .  ++...+.+.+||+||++++...+..+++.+|++++|
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            46899999999999999999998777654 4556554332 2  233456799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++.....++..+.......+.|+++|+||.|+.. ....++......     ...+.++++||++|.|++++|
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~  170 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN-AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL  170 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC-CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence            99999999998888777765432334689999999999864 223333222111     112346789999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       171 ~~l~~~i~~  179 (182)
T PTZ00133        171 DWLSANIKK  179 (182)
T ss_pred             HHHHHHHHH
Confidence            999887765

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.2e-29  Score=172.17  Aligned_cols=156  Identities=37%  Similarity=0.610  Sum_probs=132.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++.+..+...+.++...........++..+.+.+||+||++++......+++.+|+++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999887777777766666667778888899999999999888888888899999999999


Q ss_pred             CCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEEecCCCCCCc------------cCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135         84 VNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWA------------VDMNQAQELAEQFNI-PFIKTSAKTR  149 (191)
Q Consensus        84 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~s~~~~  149 (191)
                      +++++++..... |+..+....  .+.|+++|+||+|+....            +..+++..+...++. +++++|+++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999998887754 555555432  379999999999987632            346677888888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q psy11135        150 MGVDDAFYTLVR  161 (191)
Q Consensus       150 ~~v~~l~~~i~~  161 (191)
                      .|+++++++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0083|consensus

Probab=99.97  E-value=9.2e-32  Score=166.60  Aligned_cols=162  Identities=35%  Similarity=0.597  Sum_probs=142.9

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCC-CCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          7 VVVGAGGVGKSALTIQLIQNHF-VDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      +++|.+++|||.|+-++..+.+ .....++.+ +.....+..++..+.+++|||+|++++++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            4789999999999999887774 455556666 45566677899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      .+..||++.+.|+.++..+.. ....+.+++||+|+.+ +.+..++.+.+++.+++||+++|+++|.|++..|-.|.+.+
T Consensus        81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            999999999999999998754 3578899999999976 77888999999999999999999999999999999999988


Q ss_pred             Hhhhhh
Q psy11135        164 KKDKML  169 (191)
Q Consensus       164 ~~~~~~  169 (191)
                      .+....
T Consensus       160 ~k~~~~  165 (192)
T KOG0083|consen  160 KKLKMG  165 (192)
T ss_pred             HHhccC
Confidence            765443

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=2e-29  Score=171.38  Aligned_cols=155  Identities=18%  Similarity=0.259  Sum_probs=121.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+++|+++|++|||||||++++.+..+. .+.++.+.. ......+  .+.+.+||+||++.+...+..++..+|++++|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            5789999999999999999999977543 344444422 2223344  45689999999999998999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++.++.....|+..+.......+.|+++|+||+|+.... ..++...+..     ..+++++++||++|.|++++|
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  167 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI  167 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence            9999999999888888777654344679999999999987532 4455554443     235689999999999999999


Q ss_pred             HHHHH
Q psy11135        157 YTLVR  161 (191)
Q Consensus       157 ~~i~~  161 (191)
                      +++..
T Consensus       168 ~~l~~  172 (173)
T cd04154         168 DWLVD  172 (173)
T ss_pred             HHHhc
Confidence            99863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0097|consensus

Probab=99.97  E-value=2.4e-29  Score=157.50  Aligned_cols=161  Identities=30%  Similarity=0.550  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ||.+++|+-|+|||.|+..+...++..+++.+.+..+.. .+.+.+..+.+++|||+|+++++...+.+++.+.+.+.||
T Consensus        12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy   91 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   91 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence            788999999999999999999999999998888855543 4567899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++..+++..+..|+...... -.++..+++++||.|+.. +++..+++++|+++.|.-|+++|+++|.++++.|-+...
T Consensus        92 ditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ak  170 (215)
T KOG0097|consen   92 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             EehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHH
Confidence            999999999999999887764 456788999999999987 789999999999999999999999999999999988777


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+..
T Consensus       171 kiyq  174 (215)
T KOG0097|consen  171 KIYQ  174 (215)
T ss_pred             HHHH
Confidence            7654

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=7.6e-29  Score=167.47  Aligned_cols=158  Identities=25%  Similarity=0.416  Sum_probs=123.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|.+|||||||++++..+.+...++++. ........+++..+.+.+|||||...+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999988766544333 2333444566777889999999998887777778899999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHHHHHHHcC--CCEEEeccCCCCCHHHHHH
Q psy11135         84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQELAEQFN--IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~  157 (191)
                      ++++++++.+. .|...+....  .+.|+++|+||+|+.+....   .++...++..+.  .+++++||+++.|++++|+
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            99999999985 5666665432  47899999999999764332   233334444443  3799999999999999999


Q ss_pred             HHHHHHH
Q psy11135        158 TLVREIK  164 (191)
Q Consensus       158 ~i~~~~~  164 (191)
                      .+...+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=5.8e-30  Score=172.44  Aligned_cols=151  Identities=20%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   85 (191)
                      |+++|++|||||||++++.+..+...+.++.+...   ..++...+.+.+||+||+.++...+..+++++|++++|||.+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            78999999999999999998877777777765332   234555677999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH-----HHHHHHHHHcCCCEEEeccCC------CCCHHH
Q psy11135         86 SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM-----NQAQELAEQFNIPFIKTSAKT------RMGVDD  154 (191)
Q Consensus        86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~------~~~v~~  154 (191)
                      ++.++.....|+..+...  .++.|+++|+||.|+.......     ..+..++++.+++++++||++      ++|+++
T Consensus        79 ~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          79 DSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            999999998888877643  2579999999999986532111     124556667788899988888      999999


Q ss_pred             HHHHHHH
Q psy11135        155 AFYTLVR  161 (191)
Q Consensus       155 l~~~i~~  161 (191)
                      +|+.+++
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=3.1e-28  Score=170.97  Aligned_cols=165  Identities=30%  Similarity=0.545  Sum_probs=138.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +..+||+++|++|||||||++++..+.+...+.++.+..+ ......+++.+.+.+||++|+.++...+..++..+++++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            3579999999999999999999888887777777776433 333445778889999999999999888899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ++||+++..++..+..|+..+....  .+.|+++++||+|+.......+. ..+++..++.++++|+++|.|++++|.+|
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i  163 (215)
T PTZ00132         87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (215)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887643  46899999999998765444443 45777788899999999999999999999


Q ss_pred             HHHHHhhhh
Q psy11135        160 VREIKKDKM  168 (191)
Q Consensus       160 ~~~~~~~~~  168 (191)
                      .+.+.....
T Consensus       164 a~~l~~~p~  172 (215)
T PTZ00132        164 ARRLTNDPN  172 (215)
T ss_pred             HHHHhhccc
Confidence            998876544

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=8e-29  Score=168.52  Aligned_cols=155  Identities=19%  Similarity=0.299  Sum_probs=119.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|+|||||++++..+.+.. ..++.+..+. ....+  ...+.+||+||++++...+..++..+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999877654 3445443332 23333  45689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHH----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELA----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      +|+++++++.....++..+.......+.|+++++||+|+.. ....++. ..+.    +..+++++++||++|.|++++|
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG-AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC-CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence            99999999888888777775543345689999999999865 2233332 2222    2334679999999999999999


Q ss_pred             HHHHH
Q psy11135        157 YTLVR  161 (191)
Q Consensus       157 ~~i~~  161 (191)
                      ++|.+
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.5e-28  Score=165.39  Aligned_cols=153  Identities=19%  Similarity=0.266  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +|+++|++|||||||++++.+.. ....+.++.+.....   +....+.+.+|||||+.++...+..++..++++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 345555665533222   22345668999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ++++.++..+..|+..+....  ...+.|+++|+||+|+.... ..++......     ...++++++||++|.|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            999999988888887775532  23579999999999987532 2222222211     112458999999999999999


Q ss_pred             HHHHH
Q psy11135        157 YTLVR  161 (191)
Q Consensus       157 ~~i~~  161 (191)
                      ++|.+
T Consensus       157 ~~l~~  161 (162)
T cd04157         157 QWLQA  161 (162)
T ss_pred             HHHhc
Confidence            99864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=5.9e-28  Score=166.57  Aligned_cols=156  Identities=21%  Similarity=0.343  Sum_probs=123.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +..||+++|++|||||||++++.+..+. .+.++..... ..+.+++  ..+.+||+||+..+...+..++..++++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4789999999999999999999987753 3444444322 3344554  4588999999999888889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----------------cCCCEEEec
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----------------FNIPFIKTS  145 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~~s  145 (191)
                      +|+++.+++.....++..+.......+.|+++++||+|+.. .+..++.+.....                ..++++++|
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS  172 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence            99999998888888888876644456789999999999864 4556666655532                224689999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~  162 (191)
                      |+++.|++++|++|.+.
T Consensus       173 a~~~~gv~e~~~~l~~~  189 (190)
T cd00879         173 VVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ecCCCChHHHHHHHHhh
Confidence            99999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.1e-27  Score=165.40  Aligned_cols=147  Identities=22%  Similarity=0.315  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEE-----cCeEEEEEEEeCCChhhHHHHHHhhcccCCE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVI-----DGETALLDILDTAGQEEYSAMRDQYMRTGEG   77 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   77 (191)
                      +||+++|..|||||||++++....+...+.+|.+..+. ....+     ++..+.+.+|||+|++++..++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            68999999999999999999999887777777763332 22333     2567889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc------------------CCCCCcEEEEEecCCCCCC-ccCHH----HHHHHH
Q psy11135         78 FLLVFAVNSMKSFEDIGSYREQIKRVK------------------DAEEVPMVLVGNKCDLSTW-AVDMN----QAQELA  134 (191)
Q Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~-~~~~~----~~~~~~  134 (191)
                      +++|||++++++++.+..|+..+....                  ...+.|+++|+||.|+.+. .+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886532                  1246899999999999763 33333    245778


Q ss_pred             HHcCCCEEEeccCCCC
Q psy11135        135 EQFNIPFIKTSAKTRM  150 (191)
Q Consensus       135 ~~~~~~~~~~s~~~~~  150 (191)
                      ++++++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            9999999988877543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=5e-28  Score=162.22  Aligned_cols=152  Identities=16%  Similarity=0.233  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|++|+|||||++++....+.. ..++.+.... .  ++.....+++|||||+.++...+..++..++++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998776543 3444443222 2  233446689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHH----HHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELA----EQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +++.++.....++..+.......+.|+++|+||+|+.... ...+.. .+.    ...+.+++++||+++.|++++|++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            9988877776666655443333578999999999986532 222222 221    1123469999999999999999998


Q ss_pred             HH
Q psy11135        160 VR  161 (191)
Q Consensus       160 ~~  161 (191)
                      .+
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            64

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=5.7e-28  Score=161.94  Aligned_cols=152  Identities=19%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|.+|||||||++++.+... ..+.++.+.... ...++  .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998873 333444443222 22333  45689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ++++++.....++..+.......+.|+++|+||+|+.... ..++..+...     ...++++++|+++|.|++++|++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            9999999998888887665555689999999999987633 3333333322     134579999999999999999998


Q ss_pred             HH
Q psy11135        160 VR  161 (191)
Q Consensus       160 ~~  161 (191)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            75

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=4.3e-28  Score=162.84  Aligned_cols=153  Identities=22%  Similarity=0.323  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      +|+++|++|||||||++++.+..+... .++.+... ..... +..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999998886543 34444222 22222 3456799999999999998899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH------HHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL------AEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +++.++.....|+..+.......+.|+++|+||+|+... ...++....      ....+++++++||++|.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA-LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC-cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            999999888888877765433357899999999998642 223333221      1223457899999999999999999


Q ss_pred             HHH
Q psy11135        159 LVR  161 (191)
Q Consensus       159 i~~  161 (191)
                      |.+
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=1.4e-27  Score=161.38  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGF   78 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   78 (191)
                      +|+++|++|+|||||++++.+...      ...+.++..... ....++  ...+.+|||||+..+...+..++..++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999976432      112223333222 223344  35588999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-------cCCCEEEeccCCCCC
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-------FNIPFIKTSAKTRMG  151 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~  151 (191)
                      ++|+|+++++++.....++..+.+.....+.|+++|+||+|+.. ....++...+.+.       .+++++++||++|.|
T Consensus        78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD-ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc-CCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            99999999988888888888876644456799999999999865 3344444444332       245799999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        152 VDDAFYTLVR  161 (191)
Q Consensus       152 v~~l~~~i~~  161 (191)
                      +++++++|..
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=5.9e-28  Score=163.19  Aligned_cols=152  Identities=15%  Similarity=0.224  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      +|+++|.+|||||||++++.+. +...+.++.+... .....  ..+.+.+||+||+.++...+..++++++++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4799999999999999999876 5555566655432 23333  345689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH------HHHHHHcC--CCEEEeccCCC------C
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA------QELAEQFN--IPFIKTSAKTR------M  150 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~------~  150 (191)
                      ++..++..+..|+..+.......+.|+++|+||.|+.... ...+.      ..+++..+  +.++++||++|      .
T Consensus        77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999888765444678999999999987632 22221      22332233  56888999998      8


Q ss_pred             CHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVR  161 (191)
Q Consensus       151 ~v~~l~~~i~~  161 (191)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=9.8e-27  Score=159.54  Aligned_cols=156  Identities=17%  Similarity=0.292  Sum_probs=119.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++++|+++|.+|||||||++++.+..+.. +.++.... ......+  .+.+.+||+||+..+...+..++.+++++++|
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            36899999999999999999999876543 23333322 2223333  35588999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------------cCCCEEEeccCCC
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------------FNIPFIKTSAKTR  149 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~~  149 (191)
                      +|+++++++.....++..+.......+.|+++|+||+|+.. .++.++.......            ....++++|++++
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~  170 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY-AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR  170 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence            99999999988888887776543445789999999999864 3444544332210            1235899999999


Q ss_pred             CCHHHHHHHHHHH
Q psy11135        150 MGVDDAFYTLVRE  162 (191)
Q Consensus       150 ~~v~~l~~~i~~~  162 (191)
                      .|+++++++|...
T Consensus       171 ~g~~~~~~wl~~~  183 (184)
T smart00178      171 MGYGEGFKWLSQY  183 (184)
T ss_pred             CChHHHHHHHHhh
Confidence            9999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=1.9e-26  Score=154.30  Aligned_cols=153  Identities=20%  Similarity=0.321  Sum_probs=118.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   85 (191)
                      |+++|++|||||||++++.+.++...+.++.+..... ....+  +.+.+||+||+..+...+..++..+|++++++|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            7899999999999999999998877777766644332 23333  66899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         86 SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      +.+++.....++..+.......+.|+++|+||+|+.......+....+    .....++++++|++++.|+++++++|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            999888888877777654334578999999999987532211111121    1122357899999999999999999864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.8e-26  Score=156.79  Aligned_cols=157  Identities=24%  Similarity=0.406  Sum_probs=124.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|..||||||+++++....... ..||.+... ..+.+++  +.+.+||.+|+..++..|+.++..++++++|
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV   88 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFV   88 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeEEE
Confidence            47899999999999999999998765433 344544332 2334444  4488999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------cCCCEEEeccCCCCCHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------FNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~v~~l  155 (191)
                      +|.++.+.+.+....+..+.......+.|+++++||.|+.. ....++.......      ..+.++.+|+.+|+|+.+.
T Consensus        89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~-~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~  167 (175)
T PF00025_consen   89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD-AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG  167 (175)
T ss_dssp             EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT-SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred             EecccceeecccccchhhhcchhhcccceEEEEeccccccC-cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence            99999999999988888887755556899999999999875 3455555544322      2345899999999999999


Q ss_pred             HHHHHHHH
Q psy11135        156 FYTLVREI  163 (191)
Q Consensus       156 ~~~i~~~~  163 (191)
                      ++||.+++
T Consensus       168 l~WL~~~~  175 (175)
T PF00025_consen  168 LEWLIEQI  175 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.3e-26  Score=165.38  Aligned_cols=138  Identities=20%  Similarity=0.387  Sum_probs=115.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc-------------CeEEEEEEEeCCChhhHHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~   67 (191)
                      ..+||+++|..|||||||++++....+...+.+|.+..+ ...+.++             +..+.++||||+|++.+..+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            579999999999999999999999888777777776433 3334443             25678999999999999999


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----------CCCCcEEEEEecCCCCCCc-------cCHHH
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-----------AEEVPMVLVGNKCDLSTWA-------VDMNQ  129 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~-------~~~~~  129 (191)
                      +..++++++++|+|||+++.++++.+..|+..+.....           ..++|++||+||+|+...+       +..++
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~  179 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA  179 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence            99999999999999999999999999999999876431           1358999999999996531       35788


Q ss_pred             HHHHHHHcCC
Q psy11135        130 AQELAEQFNI  139 (191)
Q Consensus       130 ~~~~~~~~~~  139 (191)
                      +++++++.++
T Consensus       180 a~~~A~~~g~  189 (334)
T PLN00023        180 ARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHcCC
Confidence            9999999884

>KOG4252|consensus

Probab=99.95  E-value=4.8e-28  Score=157.35  Aligned_cols=165  Identities=30%  Similarity=0.464  Sum_probs=145.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+|++++|..++||||+|++++.+-+..++..+.+..+ .....++...+.+.+||++|+++++.+...+++++.+.++|
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV   99 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV   99 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence            37999999999999999999999999888888777433 33344566666678999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+-+|..||+...+|.+.+....  ..+|.++|-||+|+.+ ..+...+++.+++.+...++-+|++...|+...|..|+
T Consensus       100 FSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen  100 FSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            99999999999999999997743  4789999999999987 67788999999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      ..+.....+
T Consensus       178 eK~~q~~kq  186 (246)
T KOG4252|consen  178 EKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHH
Confidence            998776555

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.1e-25  Score=152.82  Aligned_cols=143  Identities=27%  Similarity=0.441  Sum_probs=122.8

Q ss_pred             CCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy11135         27 HFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD  105 (191)
Q Consensus        27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  105 (191)
                      .+...+.+|.+ +.....+.+++..+.+.+|||||++++...+..+++++|++++|||++++++++.+..|+..+.... 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence            45567777877 4444556788889999999999999999999999999999999999999999999999998887643 


Q ss_pred             CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhhhhh
Q psy11135        106 AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR  170 (191)
Q Consensus       106 ~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~  170 (191)
                      .+..|+++|+||+|+.. ..+..+++..++..+++.++++||++|.|++++|++|.+.+.+.....
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~  148 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSN  148 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccC
Confidence            35689999999999965 567888888899999999999999999999999999999997755443

>KOG0073|consensus

Probab=99.95  E-value=1.6e-25  Score=143.52  Aligned_cols=160  Identities=19%  Similarity=0.335  Sum_probs=127.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++++|+++|..|+||||+++++.+.. .....|+.+-... +.  ....+++.+||.+|+...+..|+.||+..|++++|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TL--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EE--EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            38999999999999999999998776 2333344443322 23  33445589999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH------HHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ------AQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      +|.+++..+++....++.+.......+.|+++++||.|+.. .+..++      ...+++...++++.||+.+|+++.+.
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~-~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG-ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc-ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            99999998888877777766544556789999999999974 223232      34566777899999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy11135        156 FYTLVREIKKD  166 (191)
Q Consensus       156 ~~~i~~~~~~~  166 (191)
                      ++|+.+.+.+.
T Consensus       170 idWL~~~l~~r  180 (185)
T KOG0073|consen  170 IDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999998873

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=7.2e-26  Score=153.45  Aligned_cols=157  Identities=22%  Similarity=0.215  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHH---hhcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRD---QYMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~---~~~~~~~   76 (191)
                      +|+++|.+|||||||++++.+.... .....++..........++. ..+.+|||||+.+    ......   ..+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999876532 22222322222222333333 3588999999632    111122   2245699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHH-cCCCEEEeccCCCCCHH
Q psy11135         77 GFLLVFAVNSM-KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~  153 (191)
                      ++++|+|++++ +++..+..|...+..... ....|+++|+||+|+.+.....+....+... .+.+++++|++++.|++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  160 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD  160 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence            99999999998 788888888888766432 2468999999999997644444555556666 37889999999999999


Q ss_pred             HHHHHHHHH
Q psy11135        154 DAFYTLVRE  162 (191)
Q Consensus       154 ~l~~~i~~~  162 (191)
                      ++|++|.+.
T Consensus       161 ~l~~~i~~~  169 (170)
T cd01898         161 ELLRKLAEL  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=1.2e-25  Score=153.64  Aligned_cols=153  Identities=22%  Similarity=0.325  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCCc------cceE---EEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-------FVDEYDPTI------EDSY---RKQVVI---DGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|++++|||||++++.+..       +...+.++.      +...   .....+   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998743       111121111      1111   111112   5667789999999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC---EE
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP---FI  142 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  142 (191)
                      ..+..++..+|++++|||+++..+......|....     ..+.|+++|+||+|+.... ..+...++++.++++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876555555443222     1367999999999986422 233345667777764   89


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q psy11135        143 KTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ++||++|.|+++++++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.9e-25  Score=151.85  Aligned_cols=152  Identities=26%  Similarity=0.384  Sum_probs=116.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|||||||++++.+..+.. ..++.+... .....++  ..+.+||+||+..+...+..+++.+++++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            46899999999999999999999876532 333333221 2233444  4588999999998888888889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--------CEEEeccCCCCCHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--------PFIKTSAKTRMGVD  153 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~v~  153 (191)
                      +|+++..++.....++..+.......+.|+++++||+|+.... .   ..++.+.+++        +++++||++|.|++
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~---~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-P---AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-C---HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            9999998888888887777654444578999999999986422 2   2233333332        47899999999999


Q ss_pred             HHHHHHHH
Q psy11135        154 DAFYTLVR  161 (191)
Q Consensus       154 ~l~~~i~~  161 (191)
                      ++|++|.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2.3e-25  Score=164.30  Aligned_cols=160  Identities=21%  Similarity=0.213  Sum_probs=119.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhh-------HHHHHHhhcccC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEE-------YSAMRDQYMRTG   75 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~   75 (191)
                      .|+++|.|+||||||++++.+.. ....++.|+.......+.+ ++..  +.+||+||..+       ........++.+
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            47899999999999999999755 3455655655444444444 3334  78999999643       222222345679


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      +++++|+|+++.++++.+..|...+..+.. ..+.|+++|+||+|+.... ...+..+.+++..+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988888888899888876543 2468999999999987533 33334555556667899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy11135        154 DAFYTLVREIKKD  166 (191)
Q Consensus       154 ~l~~~i~~~~~~~  166 (191)
                      +++++|.+.+.+.
T Consensus       318 eL~~~L~~~l~~~  330 (335)
T PRK12299        318 ELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=5.3e-25  Score=147.11  Aligned_cols=157  Identities=37%  Similarity=0.535  Sum_probs=121.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++||+++|.+|+|||||++++.+......+.+++.... ......++..+.+.+||+||+.++...+..+...+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998886666655555333 33345666667799999999999998888889999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSM-KSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +|+... .++.... .+...+...... +.|+++++||+|+............+......+++++|+.++.|+++++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 5555554 666666554433 7899999999999775544444445555556789999999999999999986


Q ss_pred             H
Q psy11135        160 V  160 (191)
Q Consensus       160 ~  160 (191)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.4e-25  Score=149.87  Aligned_cols=154  Identities=24%  Similarity=0.239  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~   74 (191)
                      +|+++|.+|+|||||++++.+..+.. .++.++........  +.....+.+|||||+...         ..........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            68999999999999999999887532 22222222222222  223456899999997320         0111111223


Q ss_pred             CCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         75 GEGFLLVFAVNSMKS--FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      +|++++|+|+++..+  .+....|+..+....  .+.|+++|+||+|+...... .+..++.+..+.+++++||+++.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhH-HHHHHhhhhccCceEEEEecccCCH
Confidence            689999999998654  355556666665432  47899999999999653221 1245555656789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11135        153 DDAFYTLVREI  163 (191)
Q Consensus       153 ~~l~~~i~~~~  163 (191)
                      +++++++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.94  E-value=8.3e-26  Score=148.32  Aligned_cols=147  Identities=21%  Similarity=0.286  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh------HHHHHHhh--ccc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE------YSAMRDQY--MRT   74 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~   74 (191)
                      ++|+++|.|+||||||+|+|++.. ...++++++.+.....+...+..  +.++|+||...      .......+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            589999999999999999999988 44667777777766777777755  78899999432      12233333  357


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      .|+++++.|+++.+.   -..+..++...    +.|+++|+||+|+..+.-..-+...+++.+|+|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999988543   22344444442    68999999999987633333346778888999999999999999999


Q ss_pred             HHHHH
Q psy11135        155 AFYTL  159 (191)
Q Consensus       155 l~~~i  159 (191)
                      ++++|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=1.6e-25  Score=147.50  Aligned_cols=134  Identities=25%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-----hHHHHHHhhcccCCEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-----EYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i   79 (191)
                      ||+++|++|||||||++++.+....  +.++..      ..+.     -.+|||||..     .+..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999877642  222211      1111     1579999973     2333333 488999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||++++.++.. ..|...    .   ..|+++|+||+|+.+.....++..++++..+. +++++||+++.|++++|++
T Consensus        68 lv~d~~~~~s~~~-~~~~~~----~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  139 (142)
T TIGR02528        68 LVQSATDPESRFP-PGFASI----F---VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY  139 (142)
T ss_pred             EEecCCCCCcCCC-hhHHHh----c---cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999887644 233221    1   23999999999997655566777788887776 8999999999999999998


Q ss_pred             HH
Q psy11135        159 LV  160 (191)
Q Consensus       159 i~  160 (191)
                      +.
T Consensus       140 l~  141 (142)
T TIGR02528       140 LN  141 (142)
T ss_pred             Hh
Confidence            74

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=4.4e-24  Score=150.40  Aligned_cols=168  Identities=33%  Similarity=0.492  Sum_probs=129.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEE-EEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      |..+||+++|+.|||||||++++.+..+...+.++....+... ....+..+.+.+|||+|+++++..+..++..+++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999999999988888866444333 333444778999999999999999999999999999


Q ss_pred             EEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-------------CHHHHHHHHHHc---CCCEE
Q psy11135         80 LVFAVNS-MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-------------DMNQAQELAEQF---NIPFI  142 (191)
Q Consensus        80 ~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~~~~~~~~---~~~~~  142 (191)
                      ++||.++ ..+.+....|...+..... ...|+++|+||+|+.....             ............   ...++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL  161 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence            9999999 4455556677777766432 5689999999999977421             122222222222   33489


Q ss_pred             EeccC--CCCCHHHHHHHHHHHHHhhhhh
Q psy11135        143 KTSAK--TRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       143 ~~s~~--~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      ++|++  .+.++.++|..+...+......
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99999  9999999999999998754433

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=4.6e-24  Score=141.50  Aligned_cols=153  Identities=40%  Similarity=0.670  Sum_probs=121.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC
Q psy11135          8 VVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS   86 (191)
Q Consensus         8 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   86 (191)
                      ++|++|+|||||++++.+... .....++.................+.+||+||+..+.......+..++++++++|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            579999999999999998886 4444444444445555555667789999999999888888888999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH--HHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         87 MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ--AQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        87 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      +.+......|+..........+.|+++|+||+|+.........  ..........+++++|+.++.|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9998888887444444445668999999999998764433333  3455566678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.4e-24  Score=157.00  Aligned_cols=156  Identities=16%  Similarity=0.083  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH--------HHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY--------SAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~   74 (191)
                      +|+++|.+|||||||+|+|.+...  .+..+.|+..........++  ..+.+|||||..+.        .......+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            689999999999999999999874  34445555544433333333  34889999997542        1123455789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD  153 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  153 (191)
                      +|++++++|+++..+..  ..++..+..    .+.|+++|+||+|+.......+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999866553  333333322    368999999999986533223344455555554 79999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy11135        154 DAFYTLVREIKKDKM  168 (191)
Q Consensus       154 ~l~~~i~~~~~~~~~  168 (191)
                      +++++|.+.+.+...
T Consensus       154 ~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       154 FLAAFIEVHLPEGPF  168 (270)
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999998866443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=2.3e-24  Score=150.21  Aligned_cols=153  Identities=22%  Similarity=0.197  Sum_probs=107.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HHHHHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YSAMRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~   72 (191)
                      .++|+++|++|||||||++++.+.... .....++.........+++. ..+.+|||||..+         +.... ..+
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~  118 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV  118 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence            369999999999999999999988732 22222222222233334443 2588999999732         22222 235


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|++++++|++++.+......|...+... ...+.|+++|+||+|+......    .......+.+++++|++++.|+
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi  193 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEEL----EERLEAGRPDAVFISAKTGEGL  193 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHH----HHHhhcCCCceEEEEcCCCCCH
Confidence            6899999999999988877766666655443 3346899999999998653211    1344555678999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        153 DDAFYTLVRE  162 (191)
Q Consensus       153 ~~l~~~i~~~  162 (191)
                      ++++++|.+.
T Consensus       194 ~~l~~~L~~~  203 (204)
T cd01878         194 DELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=3.2e-24  Score=158.12  Aligned_cols=158  Identities=23%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH----HHHHh---hcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS----AMRDQ---YMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~~   76 (191)
                      .|+++|.++||||||++++.+.. ....++.|+.........+++ ...+.+||+||..+..    .+...   .+..++
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            58899999999999999999765 344555555444344444444 2347899999975321    22222   345799


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         77 GFLLVFAVNSM---KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ++++|+|+++.   +.++.+..|..++..+.. ..+.|+++|+||+|+.......+..+.+++..+.+++++||++++|+
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI  317 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGL  317 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCH
Confidence            99999999986   677778888877766532 24689999999999976433344456667777889999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11135        153 DDAFYTLVREI  163 (191)
Q Consensus       153 ~~l~~~i~~~~  163 (191)
                      ++++++|.+.+
T Consensus       318 ~eL~~~I~~~l  328 (329)
T TIGR02729       318 DELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=4.5e-24  Score=143.73  Aligned_cols=149  Identities=19%  Similarity=0.123  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH---FVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .|+++|++|||||||++++.+..   +...+.+. +.+.......+.+ ...+.+|||||++++......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999998643   22222221 1121122233331 3458999999999887777777889999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHH---cCCCEEEeccCCCCC
Q psy11135         81 VFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQ---FNIPFIKTSAKTRMG  151 (191)
Q Consensus        81 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~---~~~~~~~~s~~~~~~  151 (191)
                      |+|+++   +++.+.+    ..+.. .  ...|+++|+||+|+....   ...++..+..+.   .+.+++++|++++.|
T Consensus        81 V~d~~~~~~~~~~~~~----~~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          81 VVAADEGIMPQTREHL----EILEL-L--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEECCCCccHhHHHHH----HHHHH-h--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            999987   3333222    11211 1  124999999999987532   112233333333   357999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        152 VDDAFYTLVR  161 (191)
Q Consensus       152 v~~l~~~i~~  161 (191)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0070|consensus

Probab=99.93  E-value=3e-25  Score=145.70  Aligned_cols=160  Identities=20%  Similarity=0.307  Sum_probs=129.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++++|+++|-.++||||++.++...+.... .||.+-.... +.+.  .+.+.+||..|+++++.+|++|+.+.+++|+|
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV   91 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV   91 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence            588999999999999999999998887766 6676644433 3334  55589999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~  156 (191)
                      +|.+|.+.+.+.+..+..+.........|+++.+||.|+.. ..+..+..+....     ....+-.++|.+|+|+.+.+
T Consensus        92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~-als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl  170 (181)
T KOG0070|consen   92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG-ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL  170 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc-cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence            99999999999988888887766667899999999999876 2233333322222     22456778999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      +++.+.+...
T Consensus       171 ~wl~~~~~~~  180 (181)
T KOG0070|consen  171 DWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHhcc
Confidence            9999887653

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.93  E-value=3.3e-24  Score=143.59  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=107.1

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhcc--cCCEE
Q psy11135          8 VVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYMR--TGEGF   78 (191)
Q Consensus         8 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~~~~   78 (191)
                      ++|.+|+|||||++++.+.... ..+..++.......+.+++.  .+.+|||||+.++..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5799999999999999987633 33333444443444555654  588999999876442      3455554  89999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++++|.++.++..   .+...+..    .+.|+++|+||+|+............+++.++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998865432   33333333    2689999999999976433334456777888999999999999999999999


Q ss_pred             HHHHH
Q psy11135        159 LVREI  163 (191)
Q Consensus       159 i~~~~  163 (191)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=150.15  Aligned_cols=153  Identities=19%  Similarity=0.203  Sum_probs=100.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC-----------hhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG-----------QEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~   71 (191)
                      .++|+++|.+|+|||||++++.+..+.....+.+.. ........    .+.+|||||           ++.+...+..+
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY   83 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence            579999999999999999999987754433332221 11112222    478999999           45666655555


Q ss_pred             cc----cCCEEEEEEeCCChhhHHHHHHH--------HHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC
Q psy11135         72 MR----TGEGFLLVFAVNSMKSFEDIGSY--------REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI  139 (191)
Q Consensus        72 ~~----~~~~~i~v~d~~~~~s~~~~~~~--------~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  139 (191)
                      +.    .++++++|+|.+....+.  ..|        ...+.......+.|+++|+||+|+....  .+...++++.++.
T Consensus        84 ~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~  159 (201)
T PRK04213         84 IEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGL  159 (201)
T ss_pred             HHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcC
Confidence            43    356777787775432110  111        0111111122478999999999986533  3455666666664


Q ss_pred             ---------CEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        140 ---------PFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       140 ---------~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                               +++++||++| |+++++++|.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence                     5899999999 999999999988754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.92  E-value=2e-23  Score=159.38  Aligned_cols=150  Identities=23%  Similarity=0.308  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH--------HHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM--------RDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   72 (191)
                      .++|+++|++|+|||||+|++++..  ....+++++.+.....+.+++..  +.+|||||..+....        ...++
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            5799999999999999999999875  45677777666666666777655  689999998543321        23567


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      +.+|++++|||++++.+.+..  |+..+..    .+.|+++|+||+|+...     +...+++.++.+++++|+++ .|+
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~~~~vSak~-~gI  348 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-----SLEFFVSSKVLNSSNLSAKQ-LKI  348 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-----chhhhhhhcCCceEEEEEec-CCH
Confidence            899999999999998776654  5544432    36799999999998643     22445667788999999997 699


Q ss_pred             HHHHHHHHHHHHhh
Q psy11135        153 DDAFYTLVREIKKD  166 (191)
Q Consensus       153 ~~l~~~i~~~~~~~  166 (191)
                      +++++.+.+.+.+.
T Consensus       349 ~~~~~~L~~~i~~~  362 (442)
T TIGR00450       349 KALVDLLTQKINAF  362 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=2.7e-23  Score=138.83  Aligned_cols=145  Identities=28%  Similarity=0.302  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~   73 (191)
                      ++|+++|++|+|||||++++.+...  .....+++..........++  ..+.+|||||..+...        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999999998763  23344444343333344444  3478899999654321        2334577


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|++++++|++++.+......+..       ....|+++|+||+|+......      .....+.+++++|+.++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998776665543322       346899999999998763322      345556799999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        154 DAFYTLVREI  163 (191)
Q Consensus       154 ~l~~~i~~~~  163 (191)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=5e-23  Score=153.10  Aligned_cols=151  Identities=22%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh---------hHHHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE---------EYSAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~   73 (191)
                      ++|+++|.+|+|||||+|++.+... ..+...++.+.......+++. ..+.+|||||..         .+...+. .+.
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~  267 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-EVR  267 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-HHH
Confidence            7899999999999999999998773 344445555555555556432 258899999972         2333332 477


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|++++|+|++++.+.+.+..|...+.. ....+.|+++|+||+|+...    ....... ....+++++||+++.|++
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~-l~~~~~piIlV~NK~Dl~~~----~~v~~~~-~~~~~~i~iSAktg~GI~  341 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEKVLEE-LGAEDIPQLLVYNKIDLLDE----PRIERLE-EGYPEAVFVSAKTGEGLD  341 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHHHHHH-hccCCCCEEEEEEeecCCCh----HhHHHHH-hCCCCEEEEEccCCCCHH
Confidence            89999999999998877776655554444 23346899999999998642    1222221 223468999999999999


Q ss_pred             HHHHHHHHH
Q psy11135        154 DAFYTLVRE  162 (191)
Q Consensus       154 ~l~~~i~~~  162 (191)
                      ++++.|.+.
T Consensus       342 eL~~~I~~~  350 (351)
T TIGR03156       342 LLLEAIAER  350 (351)
T ss_pred             HHHHHHHhh
Confidence            999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=9.2e-23  Score=137.91  Aligned_cols=155  Identities=21%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .|+++|.+|+|||||++++....+.....+... .........+ +....+.+|||||+..+...+...+..+|++++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999998876544332222 1111222222 13456889999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHH----Hc--CCCEEEeccCCCCCHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAE----QF--NIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~----~~--~~~~~~~s~~~~~~v~~  154 (191)
                      |+++...... ...+..+..    .+.|+++|+||+|+......  .+....+..    .+  .++++++|++++.|+++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            9987432111 112222222    46899999999998742211  111111111    11  36899999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        155 AFYTLVREIK  164 (191)
Q Consensus       155 l~~~i~~~~~  164 (191)
                      ++++|.+...
T Consensus       157 l~~~l~~~~~  166 (168)
T cd01887         157 LLEAILLLAE  166 (168)
T ss_pred             HHHHHHHhhh
Confidence            9999887653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=3.2e-23  Score=153.87  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-H-------HHHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-S-------AMRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~   72 (191)
                      .++|+++|.+|||||||++++.+..+.  +....++..........++.  .+.+|||||..+. .       ......+
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            569999999999999999999988753  23333444444444455554  4789999998532 1       1122347


Q ss_pred             ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCC
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTR  149 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  149 (191)
                      ..+|++++++|..+  ++.... .++..+..    .+.|.++|+||+|+...  ...+..++....+  ..++++||++|
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iSAktg  201 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPISALSG  201 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            78999999999765  333443 33333333    24577899999998653  2344555555444  57999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhh
Q psy11135        150 MGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~~~~~  169 (191)
                      .|+++++++|...+.+....
T Consensus       202 ~gv~eL~~~L~~~l~~~~~~  221 (339)
T PRK15494        202 KNIDGLLEYITSKAKISPWL  221 (339)
T ss_pred             cCHHHHHHHHHHhCCCCCCC
Confidence            99999999999988765433

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=5.7e-23  Score=159.03  Aligned_cols=156  Identities=26%  Similarity=0.283  Sum_probs=112.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHH-H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMR-D   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~-~   69 (191)
                      .++|+++|.+|||||||++++++...  .....+++.+.....+..++..  +.+|||||.          +.+.... .
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence            47999999999999999999998763  4555566666655666667766  578999995          2333332 2


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH---HHHH-HHHHHcCCCEEEec
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM---NQAQ-ELAEQFNIPFIKTS  145 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~-~~~~~~~~~~~~~s  145 (191)
                      .+++.+|++++|+|+++..+...+. ++..+..    .+.|+++|+||+|+.......   ++.. .+.....++++++|
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            3578999999999999987766553 3333332    468999999999997522111   1111 12222347899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy11135        146 AKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~  165 (191)
                      |++|.|++++|+.+.+.+..
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        364 AKTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887754

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.8e-22  Score=152.53  Aligned_cols=159  Identities=22%  Similarity=0.278  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhh----HHHHHHhh---cccC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEE----YSAMRDQY---MRTG   75 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~   75 (191)
                      .|+++|.++||||||++++++... ...++.++.......+.++ +.  .+.+||+||..+    ...+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~--~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGR--SFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCc--eEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            589999999999999999997662 3445555444333333343 33  488999999643    12233333   4568


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         76 EGFLLVFAVNSM---KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        76 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                      +++++|+|+++.   +.++.+..|...+..+.. ..+.|.++|+||+|+..   ..+....+++.++.+++++||+++.|
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE---AEENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC---CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            999999999864   566777777777766542 24689999999999843   33456677777778999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy11135        152 VDDAFYTLVREIKKDKM  168 (191)
Q Consensus       152 v~~l~~~i~~~~~~~~~  168 (191)
                      +++++++|.+.+.+.+.
T Consensus       315 I~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        315 LDELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999998876544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.9e-23  Score=159.92  Aligned_cols=152  Identities=22%  Similarity=0.270  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   73 (191)
                      .+|+++|.+|||||||++++.+...  ....++++.+.......+++..  +.+|||||++.        +......++.
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998763  3334344444455555556655  78899999752        3344556788


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|++++|+|+++..+... ..+...+..    .+.|+++|+||+|+....  .+....+....+ .++++||++|.|++
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~--~~~~~~~~~g~~-~~~~iSA~~g~gi~  188 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE--ADAAALWSLGLG-EPHPVSALHGRGVG  188 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc--hhhHHHHhcCCC-CeEEEEcCCCCCcH
Confidence            9999999999998655432 233333332    468999999999986422  122222222223 45799999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      +++++|.+.+.+
T Consensus       189 eL~~~i~~~l~~  200 (472)
T PRK03003        189 DLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHhhccc
Confidence            999999988865

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.91  E-value=4.5e-23  Score=158.18  Aligned_cols=147  Identities=28%  Similarity=0.328  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH--------HHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM--------RDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   72 (191)
                      .++|+++|.+|+|||||+|++.+..  ...+.++++.+.......+++..  +.+|||||..++...        ....+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            5799999999999999999999876  35566666666666666666655  788999997653321        23457


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|++++|+|++++.+.+....|..       ..+.|+++|+||+|+.......       ...+.+++++|+++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEeeCCCCH
Confidence            88999999999999877665433322       3468999999999986522111       344578999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11135        153 DDAFYTLVREIKK  165 (191)
Q Consensus       153 ~~l~~~i~~~~~~  165 (191)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=3.1e-23  Score=141.23  Aligned_cols=153  Identities=24%  Similarity=0.251  Sum_probs=105.3

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHH----H---HHHhhcccCCEE
Q psy11135          8 VVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYS----A---MRDQYMRTGEGF   78 (191)
Q Consensus         8 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~----~---~~~~~~~~~~~~   78 (191)
                      ++|++|||||||++++.+... ...+..++.........++ +..  +.+|||||..+..    .   .....+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            579999999999999998764 2333333333322333344 444  7899999964321    1   122346779999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHhhcC------CCCCcEEEEEecCCCCCCcc-CHHHHHHHHHHcCCCEEEec
Q psy11135         79 LLVFAVNSM------KSFEDIGSYREQIKRVKD------AEEVPMVLVGNKCDLSTWAV-DMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        79 i~v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ++++|+++.      .++.....|...+.....      ..+.|+++|+||+|+..... ............+.+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      567777777776654332      14689999999999875222 11112234444567899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~  162 (191)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.91  E-value=1.5e-22  Score=139.27  Aligned_cols=155  Identities=20%  Similarity=0.232  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc---------------cceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      +|+++|.+|+|||||++++.+...........               .+........+.....+.+|||||+.++...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            48999999999999999999887544332111               000011111222244588999999999888888


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHH----------
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQ----------  136 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~----------  136 (191)
                      .++..+|++++++|..+..+... ..++..+..    .+.|+++|+||+|+.....   ..++.++....          
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            88999999999999987554322 223322222    4789999999999975221   12223333332          


Q ss_pred             ----cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        137 ----FNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       137 ----~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                          ...+++++|++++.|++++++++.+.+.
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                3468999999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.8e-22  Score=154.45  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----HHH---HHhhcccC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----SAM---RDQYMRTG   75 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~---~~~~~~~~   75 (191)
                      -.|+++|.|+||||||+++|.+.. ...+++.|+.......+...+.  .+.+||+||..+.    ..+   ....+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            368999999999999999999765 3355665655544444555554  4889999995321    111   12235679


Q ss_pred             CEEEEEEeCCCh----hhHHHHHHHHHHHHhhc----------CCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCE
Q psy11135         76 EGFLLVFAVNSM----KSFEDIGSYREQIKRVK----------DAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPF  141 (191)
Q Consensus        76 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  141 (191)
                      +++++|+|+++.    +.+..+..+..++..+.          .....|.+||+||+|+.......+.........++++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V  317 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV  317 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence            999999999763    34445555555555443          2346899999999998652222222333334557899


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        142 IKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       142 ~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                      +++|++++.|+++++.+|.+.+...+.
T Consensus       318 f~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        318 FEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999998876553

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=4.1e-23  Score=131.98  Aligned_cols=115  Identities=30%  Similarity=0.542  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ||+|+|++|||||||++++.+....  ....+..... .............+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998865  2222222222 223445566666689999999988887777779999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCC
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCD  119 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D  119 (191)
                      ||+++++++..+..++..+.... ...+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999998865544443322 234599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=7.7e-23  Score=136.71  Aligned_cols=145  Identities=20%  Similarity=0.220  Sum_probs=101.3

Q ss_pred             EEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcccCC
Q psy11135          7 VVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMRTGE   76 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~   76 (191)
                      +++|.+|+|||||++++.+..  ......+++.+........++  ..+.+|||||..+...        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            478999999999999999775  334444444444444444454  4488999999876432        3345678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135         77 GFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDA  155 (191)
Q Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l  155 (191)
                      ++++++|..+..+.... .+...+..    .+.|+++|+||+|+......    .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443322 22222222    25899999999998763221    233344565 7899999999999999


Q ss_pred             HHHHHHH
Q psy11135        156 FYTLVRE  162 (191)
Q Consensus       156 ~~~i~~~  162 (191)
                      +++|.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9998865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=1e-22  Score=140.63  Aligned_cols=158  Identities=20%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC----CCCC----ccCCccceEEEEEEEc------------CeEEEEEEEeCCChhh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH----FVDE----YDPTIEDSYRKQVVID------------GETALLDILDTAGQEE   63 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~----~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~   63 (191)
                      ++|+++|++|+|||||++++....    +...    ...++.........+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999998731    1111    1111111111112222            3356789999999876


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHH-HHH----
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQE-LAE----  135 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~-~~~----  135 (191)
                      +..........+|++++|+|+++.........+.  +...   .+.|+++|+||+|+.....   ..++..+ +..    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5444444456789999999998744333222221  1111   2569999999999874221   1122222 111    


Q ss_pred             --HcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        136 --QFNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       136 --~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                        ..+++++++|++++.|+++++++|.+++...
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence              1357899999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG3883|consensus

Probab=99.91  E-value=3.2e-22  Score=127.06  Aligned_cols=164  Identities=30%  Similarity=0.443  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCe-EEEEEEEeCCChhhH-HHHHHhhcccCCEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGE-TALLDILDTAGQEEY-SAMRDQYMRTGEGF   78 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~   78 (191)
                      --||+|+|..++|||+++..+.-.+  ...++.+|..+.+......+.+ .=.+.++||+|.... ..+..+++.-+|++
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf   88 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF   88 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence            4689999999999999999998665  4456678888887777766544 335789999997766 67888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ++||+..+++||..+..+-..+.+......+|+++.+||+|..+ .++..+.++.+++.-.+..+++++.+.-.+-+-|.
T Consensus        89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~  168 (198)
T KOG3883|consen   89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFT  168 (198)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHH
Confidence            99999999999999888777787777778899999999999976 67888899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy11135        158 TLVREIKKD  166 (191)
Q Consensus       158 ~i~~~~~~~  166 (191)
                      .+...+...
T Consensus       169 ~l~~rl~~p  177 (198)
T KOG3883|consen  169 YLASRLHQP  177 (198)
T ss_pred             HHHHhccCC
Confidence            988888653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=1.3e-22  Score=135.55  Aligned_cols=141  Identities=19%  Similarity=0.209  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----hHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----EYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~   80 (191)
                      +|+++|.+|+|||||++++.+.....  ..+ .     ...+...    .+|||||..    ++.......+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~-~-----~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT-Q-----AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc-e-----EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987654211  111 1     1122222    269999962    222222234789999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--CEEEeccCCCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--PFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++|+++.++..  ..|+..+     ..+.|+++++||+|+..  ...+...++..+.+.  |++++|++++.|++++|++
T Consensus        71 v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~--~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~  141 (158)
T PRK15467         71 VHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD--ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY  141 (158)
T ss_pred             EEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc--ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence            99999876542  2333222     13579999999999854  345566677777774  8999999999999999999


Q ss_pred             HHHHHHhh
Q psy11135        159 LVREIKKD  166 (191)
Q Consensus       159 i~~~~~~~  166 (191)
                      +.+.+.+.
T Consensus       142 l~~~~~~~  149 (158)
T PRK15467        142 LASLTKQE  149 (158)
T ss_pred             HHHhchhh
Confidence            98877553

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=1.3e-22  Score=140.32  Aligned_cols=146  Identities=16%  Similarity=0.221  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh--CCCCCCcc------------CCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ--NHFVDEYD------------PTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      +|+++|.+++|||||++++..  ..+...+.            .+.+ +.......++...+.+.+|||||++++.....
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            789999999999999999997  33433220            0111 11112223444556789999999999999999


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHH-------HcCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAE-------QFNIP  140 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~-------~~~~~  140 (191)
                      .+++.+|++++|+|+++.. ......++.....    .+.|+++|+||+|+.....  ..++..++..       ..+++
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            9999999999999998732 2222333333322    3689999999999865322  1233344432       33678


Q ss_pred             EEEeccCCCCCHHHH
Q psy11135        141 FIKTSAKTRMGVDDA  155 (191)
Q Consensus       141 ~~~~s~~~~~~v~~l  155 (191)
                      ++++|+++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999776443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04163 Era Era subfamily

Probab=99.90  E-value=2.8e-22  Score=135.07  Aligned_cols=155  Identities=21%  Similarity=0.170  Sum_probs=104.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE--YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQ   70 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~   70 (191)
                      |...+|+++|++|+|||||++++.+......  ...++......  ........+.+|||||.....        .....
T Consensus         1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   78 (168)
T cd04163           1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS   78 (168)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence            5688999999999999999999998764322  22222222222  233334558899999965322        23344


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKT  148 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~  148 (191)
                      .+..+|++++++|.+++.+- ....+...+..    .+.|+++|+||+|+.. .....+....+....+ .+++++|+++
T Consensus        79 ~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIGE-GDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            57789999999999986211 11222222322    2579999999999974 2223333444555553 6899999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVRE  162 (191)
Q Consensus       149 ~~~v~~l~~~i~~~  162 (191)
                      +.+++++++.|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=4.1e-22  Score=149.80  Aligned_cols=163  Identities=20%  Similarity=0.191  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~   76 (191)
                      .|+++|.||||||||+|+|++.. ..+.++.|+.......+..++. ..+.++||||..+..       ......+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            58999999999999999999766 4456666666555555555432 237899999975421       11123477899


Q ss_pred             EEEEEEeCC---ChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCC
Q psy11135         77 GFLLVFAVN---SMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRM  150 (191)
Q Consensus        77 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  150 (191)
                      ++++++|++   +.+.++.+..|...+..+.. ..+.|.++|+||+|+.......+....+.+..+  .+++++||+++.
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~  319 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL  319 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence            999999998   45566677777777766432 236799999999998753323344455555544  479999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy11135        151 GVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~  168 (191)
                      +++++++.|.+.+.+...
T Consensus       320 GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        320 GVKELCWDLMTFIEENPR  337 (390)
T ss_pred             CHHHHHHHHHHHhhhCcc
Confidence            999999999999876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=4.6e-22  Score=138.13  Aligned_cols=118  Identities=17%  Similarity=0.306  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC-CEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG-EGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~d   83 (191)
                      +|+++|++|||||+|++++....+...+.++............+....+.+||+||+.++...+..+++.+ +++++|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887766554443222221111113345689999999999998888889998 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135         84 VNSM-KSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        84 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~  122 (191)
                      ..+. +++.....++..+....  ...+.|+++++||+|+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9997 67777777766554322  235799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=6.8e-23  Score=152.10  Aligned_cols=177  Identities=18%  Similarity=0.162  Sum_probs=124.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~   71 (191)
                      ...|+++|.|+||||||+|+|.+..  +.+++++++.+.......+.+..  +.++||+|.+..         .......
T Consensus         3 ~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           3 TPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            3579999999999999999999887  67888899999888888888888  788999996632         2344566


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~  150 (191)
                      +..+|++++|+|....-+  ..++.+   ..+....+.|+++|+||+|-..   ..+...+|. .+| -.++++||.+|.
T Consensus        81 i~eADvilfvVD~~~Git--~~D~~i---a~~Lr~~~kpviLvvNK~D~~~---~e~~~~efy-slG~g~~~~ISA~Hg~  151 (444)
T COG1160          81 IEEADVILFVVDGREGIT--PADEEI---AKILRRSKKPVILVVNKIDNLK---AEELAYEFY-SLGFGEPVPISAEHGR  151 (444)
T ss_pred             HHhCCEEEEEEeCCCCCC--HHHHHH---HHHHHhcCCCEEEEEEcccCch---hhhhHHHHH-hcCCCCceEeehhhcc
Confidence            778999999999976222  112222   2222223689999999999652   222233333 445 489999999999


Q ss_pred             CHHHHHHHHHHHHH-hhhhhhhh--hhhccccCCCccccceec
Q psy11135        151 GVDDAFYTLVREIK-KDKMLRGK--EKKKRGISGNKLKQCCVL  190 (191)
Q Consensus       151 ~v~~l~~~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~  190 (191)
                      |+.+++++++..++ ........  +.-+-.+.+.++-|..++
T Consensus       152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsL  194 (444)
T COG1160         152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSL  194 (444)
T ss_pred             CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHH
Confidence            99999999999985 22222211  234455555555555443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=4e-22  Score=153.37  Aligned_cols=156  Identities=24%  Similarity=0.269  Sum_probs=109.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-----------HHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-----------MRD   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~   69 (191)
                      .++|+++|.+|+|||||++++++..  ......+++.+........++..  +.+|||||..+...           ...
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHHH
Confidence            4899999999999999999999876  34555556665555555566654  78899999643211           122


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHHHHc----CCCEEEe
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELAEQF----NIPFIKT  144 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~----~~~~~~~  144 (191)
                      ..++.+|++++|+|+++..+..... ++..+.    ..+.|+++|+||+|+.......++. ..+...+    +++++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  324 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR-IAGLIL----EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI  324 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence            4578899999999999876554432 222222    2368999999999997311111121 2222222    4789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy11135        145 SAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ||++|.|++++|+++...+..
T Consensus       325 SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=9.4e-22  Score=133.43  Aligned_cols=154  Identities=25%  Similarity=0.298  Sum_probs=103.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----------HH-HH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----------SA-MR   68 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~   68 (191)
                      +.++|+++|.+|+|||||++++.+....  ....+++..........++..  +.+|||||..+.          .. ..
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHH
Confidence            3689999999999999999999987632  233333333333444455555  678999996432          11 11


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHHHHHc----CCCEE
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQELAEQF----NIPFI  142 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~----~~~~~  142 (191)
                      ...+..+|++++++|.+++.+.... .++....    ..+.|+++++||+|+....  ........+.+.+    +.+++
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV  153 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence            2346789999999999987664433 2222222    2358999999999987632  1122223344444    36899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q psy11135        143 KTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++|++++.|++++++++.+.
T Consensus       154 ~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         154 FISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEeccCCCCHHHHHHHHHHh
Confidence            99999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=3.4e-22  Score=146.41  Aligned_cols=159  Identities=20%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHhh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQY   71 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~   71 (191)
                      +.-.|+++|.+|||||||+|++.+....  +..+.++..........+  ...+.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999999988743  333334433333322222  3568899999965432        233445


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTR  149 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~  149 (191)
                      +..+|++++++|+++...  ....++.....   ..+.|+++|+||+|+.. .....+....+.+..+ .+++++||+++
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~  156 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG  156 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence            778999999999988322  12222212111   23679999999999973 2333344455555444 57999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q psy11135        150 MGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~~~  167 (191)
                      .|+++++++|...+.+..
T Consensus       157 ~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        157 DNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CCHHHHHHHHHHhCCCCC
Confidence            999999999999886544

>KOG0075|consensus

Probab=99.89  E-value=1.1e-22  Score=128.33  Aligned_cols=155  Identities=21%  Similarity=0.360  Sum_probs=127.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++.+.++|-.++|||||++.+..+.+...-.|+.+-....   +..+.+.+.+||.||+..+.+.|+.|.+.+++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            36789999999999999999998877666655666644333   555666789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--------CCEEEeccCCCCCHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--------IPFIKTSAKTRMGVD  153 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v~  153 (191)
                      +|+.+++.+...++.+..+.......+.|++|.+||.|+.. ..+..   ++....|        +-.|-+|+++..|++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~-AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG-ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc-cccHH---HHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            99999999999999888888877788999999999999875 22222   2334444        236889999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        154 DAFYTLVREI  163 (191)
Q Consensus       154 ~l~~~i~~~~  163 (191)
                      -+.+||++.-
T Consensus       172 ~~~~Wli~hs  181 (186)
T KOG0075|consen  172 ITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>KOG0071|consensus

Probab=99.89  E-value=6.5e-22  Score=123.84  Aligned_cols=158  Identities=18%  Similarity=0.293  Sum_probs=124.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++++|+.+|-.++||||++..+........ .||++-....   +..+.+.+.+||.+|++..+..|++|+....++|||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnvet---VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET---VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEEE---EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            589999999999999999999987665443 3444433222   334455688999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~  156 (191)
                      .|..+++..++.+..+-.+....+....|++|.+||.|+.. ....++++.+...     ...-+.++++.++.++.+-|
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~-A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl  170 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD-AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL  170 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc-ccCHHHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence            99999988888887777776655667899999999999876 3455555554332     23457889999999999999


Q ss_pred             HHHHHHHH
Q psy11135        157 YTLVREIK  164 (191)
Q Consensus       157 ~~i~~~~~  164 (191)
                      .+|.+.+.
T Consensus       171 swlsnn~~  178 (180)
T KOG0071|consen  171 SWLSNNLK  178 (180)
T ss_pred             HHHHhhcc
Confidence            99987654

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=1.7e-21  Score=148.05  Aligned_cols=156  Identities=21%  Similarity=0.199  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--HHHHH------Hhhccc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--YSAMR------DQYMRT   74 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~------~~~~~~   74 (191)
                      .+|+++|.+|||||||+|+|.+... ..+...++.+.......+.+.. .+.+|||||..+  ....+      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            4799999999999999999998763 3334444444444444454431 367899999733  11212      233678


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC-EEEeccCCCCCHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVD  153 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  153 (191)
                      +|++++|+|++++.+...+..|...+.. ....+.|+++|+||+|+......  ...  ....+.+ ++++||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e-l~~~~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEE-IDAHEIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHH-hccCCCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCCCCHH
Confidence            9999999999998877776555444433 23346899999999998642111  111  1224555 5889999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      +++++|.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998854

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.6e-21  Score=153.78  Aligned_cols=156  Identities=21%  Similarity=0.313  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCCc------cceE---EEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-------FVDEYDPTI------EDSY---RKQVVI---DGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|+.++|||||+++++...       +...+..+.      +..+   .....+   ++..+.+.+|||||+.++.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            68999999999999999998653       111111110      1111   111222   4666889999999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---CEE
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---PFI  142 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~  142 (191)
                      ..+..+++.+|++++|+|+++..+......|.....     .+.|+++|+||+|+.... ..+...++.+.++.   .++
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~~~~vi  158 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGLDASEAI  158 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCCCcceEE
Confidence            999999999999999999998666555555543332     367999999999986422 22334566666675   389


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++||++|.|+++++++|.+.+...
T Consensus       159 ~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       159 LASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             EeeccCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999887543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=8.9e-22  Score=139.01  Aligned_cols=162  Identities=17%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQ   70 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~   70 (191)
                      |+.--|+++|.|++|||||+|++.+.+  ..++.+.|+........+.+  ..++.++||||.++..        .....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            355678999999999999999999998  45666666666666655555  4458899999966432        34445


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcC-CCEEEeccCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFN-IPFIKTSAKT  148 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~-~~~~~~s~~~  148 (191)
                      .+..+|+++++.|++++..  ....+.-....   ..+.|+++++||+|............++.. ... ..++++||++
T Consensus        82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk---~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          82 ALKDVDLILFVVDADEGWG--PGDEFILEQLK---KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HhccCcEEEEEEeccccCC--ccHHHHHHHHh---hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            5788999999999988433  22333322222   135799999999998774432223333333 333 3799999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhh
Q psy11135        149 RMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      +.|++.+.+.+...+++....
T Consensus       157 g~n~~~L~~~i~~~Lpeg~~~  177 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEGPWY  177 (298)
T ss_pred             cCCHHHHHHHHHHhCCCCCCc
Confidence            999999999999999875443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=3.6e-22  Score=153.61  Aligned_cols=150  Identities=20%  Similarity=0.241  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh--------hhHHHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ--------EEYSAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~   74 (191)
                      +|+++|.+|||||||+|++.+..  ......+++.+.......+++..  +.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876  34555566666656666666665  889999996        3344556667889


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD  153 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  153 (191)
                      +|++++|+|..+..+... ..+...+..    .+.|+++|+||+|+.......   .+ ...++. +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~~---~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAVA---AE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCcccccH---HH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987433221 122222222    367999999999987633222   22 235565 79999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      ++++++.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999888755

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1673|consensus

Probab=99.89  E-value=2.5e-22  Score=127.83  Aligned_cols=162  Identities=23%  Similarity=0.373  Sum_probs=136.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .++||.++|++..|||||+-.+.+.+....+..+.+ ......+.+.+..+.+.+||..|++++....+..-..+-++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            378999999999999999999999987666666666 4556677889999999999999999999999988889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC------CccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST------WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      +||++.++++..+..|+++.+..+..  .--++|+||.|+--      .+-...+++.+++..+++.+++|+.++.|+..
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~Nkt--AiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKT--AIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCc--cceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            99999999999999999999886543  23478999999743      11223456778888999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy11135        155 AFYTLVREIKK  165 (191)
Q Consensus       155 l~~~i~~~~~~  165 (191)
                      +|..++..+..
T Consensus       177 IFK~vlAklFn  187 (205)
T KOG1673|consen  177 IFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHhC
Confidence            99988877653

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=1.3e-21  Score=136.07  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC---CCCcc--CCccceEEE-EE-----------------------EEc--C----
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYD--PTIEDSYRK-QV-----------------------VID--G----   48 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~---~~~~~--~~~~~~~~~-~~-----------------------~~~--~----   48 (191)
                      ++|+++|+.|+|||||+.++.+...   .....  .+....+.. ..                       .+.  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975521   10000  000000000 00                       000  1    


Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--  126 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--  126 (191)
                      ....+.+|||||++++.......+..+|++++|+|++++.........+..+...   ...|+++|+||+|+......  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence            1156899999999988887777788899999999998732111112222222221   12479999999998752211  


Q ss_pred             -HHHHHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        127 -MNQAQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       127 -~~~~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                       .++.+++...+   +++++++||++++|+++++++|.+.+.+
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence             12233333332   5789999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.89  E-value=2.3e-21  Score=156.28  Aligned_cols=154  Identities=14%  Similarity=0.181  Sum_probs=113.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHH
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRD   69 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~   69 (191)
                      |+.++|+++|++|||||||+|++.+... ..+.+.++.+......  +.....+.+|||||..++..          ...
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~--~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEE--EcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            6889999999999999999999998763 3444444444433333  33444588999999765432          112


Q ss_pred             hh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135         70 QY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK  147 (191)
Q Consensus        70 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~  147 (191)
                      .+  ...+|++++|+|.++.+..   ..+..++.+    .+.|+++|+||+|+.+......+.+.+.+.+|++++++|+.
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~  151 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVST  151 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEee
Confidence            23  3478999999999886542   234444433    36899999999998754434456778889999999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy11135        148 TRMGVDDAFYTLVREI  163 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~  163 (191)
                      +++|++++.+.+.+..
T Consensus       152 ~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        152 RGRGIEALKLAIDRHQ  167 (772)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999988765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.4e-21  Score=150.57  Aligned_cols=147  Identities=21%  Similarity=0.236  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   73 (191)
                      .+|+++|.+|||||||++++.+..  .....++++.+.......+++  ..+.+|||||+..        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876  345555555555555566666  4589999999876        2333455678


Q ss_pred             cCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135         74 TGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRM  150 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  150 (191)
                      .+|++++|+|..+..+..  .+..|+.   .    .+.|+++|+||+|....   .+...++ ..+++ .++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~----~~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K----SNKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H----cCCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998753322  2223322   2    26899999999996542   2223333 34565 48999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREI  163 (191)
Q Consensus       151 ~v~~l~~~i~~~~  163 (191)
                      |++++++.+....
T Consensus       149 gv~~l~~~I~~~~  161 (435)
T PRK00093        149 GIGDLLDAILEEL  161 (435)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998743

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=4.1e-21  Score=133.07  Aligned_cols=156  Identities=18%  Similarity=0.225  Sum_probs=99.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~   72 (191)
                      ..+|+++|.+|+|||||++++.+..+.....++.+..........+  ..+.+|||||.          .++......++
T Consensus        24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  101 (196)
T PRK00454         24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL  101 (196)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence            3689999999999999999999876433333333322222211112  45889999994          34444555555


Q ss_pred             ccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHHHHHHHcCCCEEEecc
Q psy11135         73 RTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus        73 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~s~  146 (191)
                      ..+   +++++++|.+++...... .+...+.    ..+.|+++++||+|+......   .+...........+++++|+
T Consensus       102 ~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa  176 (196)
T PRK00454        102 RTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSS  176 (196)
T ss_pred             HhCccceEEEEEEecCCCCCHHHH-HHHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            543   577788888775432221 1111121    236799999999998652211   12233333333678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy11135        147 KTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~  165 (191)
                      +++.|++++++.|...+.+
T Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        177 LKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CCCCCHHHHHHHHHHHhcC
Confidence            9999999999998876643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=9.4e-21  Score=145.96  Aligned_cols=156  Identities=25%  Similarity=0.289  Sum_probs=107.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHH-HHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSA-MRD   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~~   69 (191)
                      .++|+++|.+|+|||||++++++..  ......+++.+........++..  +.+|||||..+          +.. ...
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            5899999999999999999999776  34445555555554545555555  67899999532          111 122


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----cCCCEEEec
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----FNIPFIKTS  145 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~s  145 (191)
                      ..+..+|++++|+|++++.+.... .++..+.    ..+.|+++|+||+|+.......+....+...    ..++++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            357789999999999986554433 2222222    2368999999999987422111222222222    247999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy11135        146 AKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~  165 (191)
                      |+++.|++++++.+.+....
T Consensus       326 A~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999998876653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=5.9e-21  Score=149.96  Aligned_cols=152  Identities=19%  Similarity=0.253  Sum_probs=106.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +..+|+++|+.++|||||++++.+..+.....+... ......+.+++.. .+.+|||||++.+..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            356899999999999999999998776554433222 2222233343331 47899999999999999888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-------HcC--CCEEEeccCCCCC
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-------QFN--IPFIKTSAKTRMG  151 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~~  151 (191)
                      |+|+++......... +..    ....+.|+++++||+|+...  ..+.......       .++  .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e~-i~~----~~~~~vPiIVviNKiDl~~~--~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEA-ISH----AKAANVPIIVAINKIDKPEA--NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHH-HHH----HHHcCCCEEEEEECcccccC--CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            999987432222211 111    22346899999999998642  2233333322       232  4799999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        152 VDDAFYTLVR  161 (191)
Q Consensus       152 v~~l~~~i~~  161 (191)
                      +++++++|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=1e-20  Score=152.77  Aligned_cols=155  Identities=26%  Similarity=0.273  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----------hHHHHH-H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----------EYSAMR-D   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~   69 (191)
                      ..+|+++|.+|||||||++++.+..  ....+.+++.+.......+++..  +.+|||||..          .+.... .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence            3799999999999999999999887  35666777776666666677776  5689999953          122222 2


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHHHHc----CCCEEEe
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELAEQF----NIPFIKT  144 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~~  144 (191)
                      ..+..+|++++|+|+++..+..... ++..+..    .+.|+++|+||+|+.+... .+... .+...+    ..+++++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii~i  601 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRVTWARRVNL  601 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCCCCCCEEEE
Confidence            3478899999999999877666553 3333322    3689999999999975221 12222 222222    2578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy11135        145 SAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ||++|.|++++++.+.+.+..
T Consensus       602 SAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        602 SAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=1.1e-20  Score=129.97  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-------------------cCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-------------------DPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      -.+|+++|+.++|||||+.+|.........                   ...+..........+.....+.++|+||+.+
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            478999999999999999999865522111                   0000111122222124445589999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHHc--
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQF--  137 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~--  137 (191)
                      +.......+..+|++++|+|+.+.-... ....+..+..    .+.|+++|+||+|+...+ ..+...    .+.+..  
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~~~~~  156 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLKEYGE  156 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHH-HHHHHHHHHHHHHHHTTS
T ss_pred             eeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhh-HHHHHHHHHHHhcccccc
Confidence            8888888899999999999998753322 2233333333    367999999999987311 112222    233333  


Q ss_pred             ----CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        138 ----NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       138 ----~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                          .++++++|+.+|.|++++++.|.+.++
T Consensus       157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  157 NGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                247999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=6.9e-21  Score=130.08  Aligned_cols=143  Identities=15%  Similarity=0.227  Sum_probs=90.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChh----------hHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQE----------EYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~   71 (191)
                      ..+|+++|.+|+|||||++++.+..+.....++.+..... .+..++   .+.+|||||..          .+......+
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            5799999999999999999999876322222222222111 122232   47899999942          344444445


Q ss_pred             ccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHHcC--CCEEE
Q psy11135         72 MRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQFN--IPFIK  143 (191)
Q Consensus        72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~  143 (191)
                      ++.   ++++++++|.+++-+.... .++..+.    ..+.|+++++||+|+.....   ..++.+......+  .++++
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~  169 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL  169 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            543   5799999999875443333 2222222    23689999999999865221   2233334444443  48999


Q ss_pred             eccCCCCCHH
Q psy11135        144 TSAKTRMGVD  153 (191)
Q Consensus       144 ~s~~~~~~v~  153 (191)
                      +||++|+|++
T Consensus       170 ~Sa~~g~gi~  179 (179)
T TIGR03598       170 FSSLKKTGID  179 (179)
T ss_pred             EECCCCCCCC
Confidence            9999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=1.1e-20  Score=150.57  Aligned_cols=154  Identities=21%  Similarity=0.305  Sum_probs=108.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc---ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      ...|+++|+.++|||||+++|....+.....+...   ..+...+..++....+.||||||+..+..++..++..+|+++
T Consensus       244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaI  323 (742)
T CHL00189        244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAI  323 (742)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEE
Confidence            45899999999999999999988775443322221   122222333444567899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HH------HHHcC--CCEEEeccCCCC
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-EL------AEQFN--IPFIKTSAKTRM  150 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~------~~~~~--~~~~~~s~~~~~  150 (191)
                      +|+|+++......... +..+    ...+.|+++++||+|+....  .+... ++      ...++  ++++++||++|.
T Consensus       324 LVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~  396 (742)
T CHL00189        324 LIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANAN--TERIKQQLAKYNLIPEKWGGDTPMIPISASQGT  396 (742)
T ss_pred             EEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCccccC--HHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence            9999987432222211 1112    23468999999999987532  12211 11      23344  689999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREI  163 (191)
Q Consensus       151 ~v~~l~~~i~~~~  163 (191)
                      |+++++++|....
T Consensus       397 GIdeLle~I~~l~  409 (742)
T CHL00189        397 NIDKLLETILLLA  409 (742)
T ss_pred             CHHHHHHhhhhhh
Confidence            9999999987764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=2.9e-21  Score=155.94  Aligned_cols=150  Identities=19%  Similarity=0.226  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   73 (191)
                      .+|+++|.+|||||||+|++++..  .....++++.+.......+++..  +.+|||||...        +......++.
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            579999999999999999999875  33444444444444444455554  78899999653        3344556788


Q ss_pred             cCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCC
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMG  151 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  151 (191)
                      .+|++++|+|.++.-.  ... .+...+.    ..+.|+++|+||+|+....   ....++.. .+. ..+++||++|.|
T Consensus       354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~---~~~~~~~~-lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        354 LADAVVFVVDGQVGLT--STDERIVRMLR----RAGKPVVLAVNKIDDQASE---YDAAEFWK-LGLGEPYPISAMHGRG  423 (712)
T ss_pred             hCCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccccch---hhHHHHHH-cCCCCeEEEECCCCCC
Confidence            9999999999976322  222 2333333    2478999999999986421   12222222 232 467999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11135        152 VDDAFYTLVREIKK  165 (191)
Q Consensus       152 v~~l~~~i~~~~~~  165 (191)
                      +++++++|.+.+.+
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999998855

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.87  E-value=5.7e-21  Score=150.70  Aligned_cols=145  Identities=20%  Similarity=0.263  Sum_probs=105.9

Q ss_pred             cCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH------HHhhc--ccCCEEEE
Q psy11135         10 GAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM------RDQYM--RTGEGFLL   80 (191)
Q Consensus        10 G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~   80 (191)
                      |++|||||||+|++.+... ..++++++.+........++..  +.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998774 3444444444444455555554  789999998765432      23332  36899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+|.++.+..   ..+..++.+    .+.|+++|+||+|+.+......+.+.+++..+++++++|+++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999885432   222233322    368999999999986533333456788889999999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.8e-20  Score=147.68  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.|+++|+.++|||||+++|.+..   +..++.+... +.....+..++  ..+.+||+||++++.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999998643   2222222222 22222234444  56899999999999888888889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc---cCHHHHHHHHHHc----CCCEEEeccCC
Q psy11135         80 LVFAVNS---MKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA---VDMNQAQELAEQF----NIPFIKTSAKT  148 (191)
Q Consensus        80 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~---~~~~~~~~~~~~~----~~~~~~~s~~~  148 (191)
                      +|+|+++   +.+.+.+.    .+..    .++| +++|+||+|+.+..   ...++...+.+..    +++++++|+++
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t  150 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT  150 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence            9999988   33433332    2222    2567 99999999997622   1223445555554    47899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy11135        149 RMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~~  166 (191)
                      |.|++++++.|...+...
T Consensus       151 G~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       151 GQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCchhHHHHHHHHHHhC
Confidence            999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0076|consensus

Probab=99.86  E-value=3e-21  Score=125.17  Aligned_cols=160  Identities=23%  Similarity=0.371  Sum_probs=122.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG   75 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   75 (191)
                      ++.|+++|..++|||||+.++.....       +....+|.+-. ..+..+.+..  +.+||..|+...+++|..+|..+
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~~   93 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVCNAP--LSFWDLGGQESLRSLWKKYYWLA   93 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeeccce--eEEEEcCChHHHHHHHHHHHHHh
Confidence            57899999999999999998864331       12233333322 2223344444  88999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH---HHHcC---CCEEEeccCCC
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL---AEQFN---IPFIKTSAKTR  149 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~---~~~~~~s~~~~  149 (191)
                      +++++++|+++++.++.....++.+...-...+.|+++.+||.|+.+.. ...+....   ++..+   .++.++||.+|
T Consensus        94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~-~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM-EAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh-hHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            9999999999999998888777777654455689999999999988722 33333322   23332   67999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy11135        150 MGVDDAFYTLVREIKKD  166 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~~  166 (191)
                      +|+++...|+...+.++
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999998876

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=139.89  Aligned_cols=152  Identities=24%  Similarity=0.277  Sum_probs=117.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~   72 (191)
                      .+||+++|.|++|||||+|+|.+.+  .+++.++|+++.....+.++|..  +.++||+|..+-..        .....+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            5899999999999999999999887  78899999999999999999888  78899999664332        223447


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|.+++++|.+.+.+-.....     .. ....+.|+++|.||.|+.........    ....+.+++.+|+++++|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~-----~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLAL-----IE-LLPKKKPIIVVLNKADLVSKIELESE----KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHH-----HH-hcccCCCEEEEEechhcccccccchh----hccCCCceEEEEecCccCH
Confidence            78999999999998522111111     11 23457899999999999874332111    2223347899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy11135        153 DDAFYTLVREIKKD  166 (191)
Q Consensus       153 ~~l~~~i~~~~~~~  166 (191)
                      +.+.++|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=8.6e-20  Score=129.13  Aligned_cols=152  Identities=22%  Similarity=0.225  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~   76 (191)
                      +|+++|++|+|||||++++.+.. ....++.++.+.......+++.  .+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            68999999999999999999876 3344555554444444455554  48899999974322       22345688999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHHH----------------------------------------H-hh-----------
Q psy11135         77 GFLLVFAVNSMK-SFEDIGSYREQI----------------------------------------K-RV-----------  103 (191)
Q Consensus        77 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~-~~-----------  103 (191)
                      ++++|+|+++++ +...+...+...                                        . .+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 333333332211                                        0 00           


Q ss_pred             ----------cC--CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        104 ----------KD--AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       104 ----------~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                                ..  ..-.|.++|+||+|+.    ..++...+++.  .+++++||+++.|++++++.|.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                      00  1125899999999985    34555555543  46899999999999999999988764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=1.2e-19  Score=119.22  Aligned_cols=156  Identities=22%  Similarity=0.270  Sum_probs=115.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------ccC---CccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE--------YDP---TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      |.+.||+|.|+.++||||+++++........        ...   ++...-......++ ...+.+++||||.+++-.|.
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence            4678999999999999999999987773211        111   11111111112222 23488999999999999999


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc--CCCEEEeccC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF--NIPFIKTSAK  147 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~s~~  147 (191)
                      .+.+++.++++++|.+++..+ .....+.-+....   ..|++|++||.|+.... +.+..+++.+..  ..++++.++.
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~---~ip~vVa~NK~DL~~a~-ppe~i~e~l~~~~~~~~vi~~~a~  161 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN---PIPVVVAINKQDLFDAL-PPEKIREALKLELLSVPVIEIDAT  161 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc---CCCEEEEeeccccCCCC-CHHHHHHHHHhccCCCceeeeecc
Confidence            999999999999999998887 4445444443321   28999999999998744 556665555544  7899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy11135        148 TRMGVDDAFYTLVRE  162 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~  162 (191)
                      ++++..+.++.+...
T Consensus       162 e~~~~~~~L~~ll~~  176 (187)
T COG2229         162 EGEGARDQLDVLLLK  176 (187)
T ss_pred             cchhHHHHHHHHHhh
Confidence            999999999987766

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=7.8e-20  Score=144.42  Aligned_cols=156  Identities=22%  Similarity=0.310  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCC-----Cc---c------CCccceEEEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVD-----EY---D------PTIEDSYRKQVVI---DGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~-----~~---~------~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~   65 (191)
                      +++++|+.++|||||+.+++...  +..     ..   .      +.+-........+   ++..+.+.+|||||+.++.
T Consensus         9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~   88 (600)
T PRK05433          9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS   88 (600)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence            78999999999999999998642  110     00   0      0000000111111   5567889999999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC---EE
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP---FI  142 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  142 (191)
                      ..+..+++.+|++++|+|+++.........|....     ..+.|+++|+||+|+.... ..+...++.+.++++   ++
T Consensus        89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~~~vi  162 (600)
T PRK05433         89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAAD-PERVKQEIEDVIGIDASDAV  162 (600)
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCccc-HHHHHHHHHHHhCCCcceEE
Confidence            88899999999999999998865544444443222     1367999999999986532 222334555656654   89


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++||++|.|+++++++|.+.+...
T Consensus       163 ~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        163 LVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             EEecCCCCCHHHHHHHHHHhCccc
Confidence            999999999999999999887653

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=3.7e-20  Score=137.71  Aligned_cols=156  Identities=24%  Similarity=0.284  Sum_probs=119.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-----------HHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-----------AMRD   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~   69 (191)
                      .+||+++|.|++|||||+|++++.+  +..+..+|+.+.....+..++..  +.++||+|..+-.           .-..
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhhH
Confidence            5899999999999999999999988  67788889999888888888888  6779999944311           1223


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHHHH-HHHHHc----CCCEEE
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQ-ELAEQF----NIPFIK  143 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~-~~~~~~----~~~~~~  143 (191)
                      ..+..++++++++|++.+-     .+....+..+....+.++++|+||+|+.+. ....++.+ .+.+.+    .+++++
T Consensus       256 ~aI~~a~vvllviDa~~~~-----~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         256 KAIERADVVLLVIDATEGI-----SEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             hHHhhcCEEEEEEECCCCc-----hHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            4467799999999998853     344555566666678999999999998773 22333322 222222    268999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHh
Q psy11135        144 TSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      +||.++.+++.+|+++......
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHH
Confidence            9999999999999998877654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=3.8e-20  Score=148.77  Aligned_cols=152  Identities=23%  Similarity=0.293  Sum_probs=106.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +...|+++|+.++|||||+++|....+.....+... ......+.+++  ..+.||||||+..+..++...+..+|++++
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            356799999999999999999988775544332222 11122334444  458899999999999998888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-H------HHHHHcC--CCEEEeccCCCCC
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-Q------ELAEQFN--IPFIKTSAKTRMG  151 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~------~~~~~~~--~~~~~~s~~~~~~  151 (191)
                      |+|+++.........| ..    ....+.|+++++||+|+....  .+.. .      .++..++  ++++++||++|.|
T Consensus       367 VVdAddGv~~qT~e~i-~~----a~~~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G  439 (787)
T PRK05306        367 VVAADDGVMPQTIEAI-NH----AKAAGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG  439 (787)
T ss_pred             EEECCCCCCHhHHHHH-HH----HHhcCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence            9999873221111111 11    223468999999999996522  1111 1      1233444  6899999999999


Q ss_pred             HHHHHHHHHHH
Q psy11135        152 VDDAFYTLVRE  162 (191)
Q Consensus       152 v~~l~~~i~~~  162 (191)
                      +++++++|...
T Consensus       440 I~eLle~I~~~  450 (787)
T PRK05306        440 IDELLEAILLQ  450 (787)
T ss_pred             chHHHHhhhhh
Confidence            99999998753

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.8e-20  Score=125.25  Aligned_cols=149  Identities=21%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCCEE
Q psy11135          8 VVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGEGF   78 (191)
Q Consensus         8 v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~   78 (191)
                      ++|++|+|||||++++.+....  ....+++............ ...+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5799999999999999987643  2333333333333333221 3458899999966543       2444567889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH----HHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ----AQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      ++++|..+........ +....    ...+.|+++|+||+|+.........    ........+++++++|+.++.|+.+
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            9999999977665554 22222    2347899999999998763322221    1222333457899999999999999


Q ss_pred             HHHHHHHH
Q psy11135        155 AFYTLVRE  162 (191)
Q Consensus       155 l~~~i~~~  162 (191)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.85  E-value=5.8e-20  Score=142.42  Aligned_cols=158  Identities=18%  Similarity=0.247  Sum_probs=124.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-------HHHHHhhc
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-------SAMRDQYM   72 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~   72 (191)
                      |+..+|+++|+||+|||||+|++++.. ...++++.+-+.........++.  ++++|+||....       .-.+...+
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            678899999999999999999999888 67888888888888888888877  788999994321       11233333


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                       ...|+++-+.|++|.+..-   ....++...    +.|++++.|++|+.++.-..-+.+.+.+.+|+|+++++|++|.|
T Consensus        79 ~~~~D~ivnVvDAtnLeRnL---yltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G  151 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNL---YLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG  151 (653)
T ss_pred             cCCCCEEEEEcccchHHHHH---HHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence             4579999999999966422   333334442    67999999999998765555667788999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy11135        152 VDDAFYTLVREIKKDK  167 (191)
Q Consensus       152 v~~l~~~i~~~~~~~~  167 (191)
                      ++++...+.+...+..
T Consensus       152 ~~~l~~~i~~~~~~~~  167 (653)
T COG0370         152 LEELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999987655443

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.85  E-value=6.1e-20  Score=118.04  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----hHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----EYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~   80 (191)
                      ||+++|+.|||||||+++|.+.+.  .+..|....      +.     =.++||||--    .+....-....++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------YY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------ec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999988664  222221111      11     1348999932    333444444668999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +.|.+++.+...-        .+...-..|+|-|+||+|+.......+.+.++.+..|+ .+|++|+.+|+|++++.++|
T Consensus        70 l~dat~~~~~~pP--------~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   70 LQDATEPRSVFPP--------GFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             EecCCCCCccCCc--------hhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence            9999996542211        11112357999999999998545566777788888887 68999999999999999987


Q ss_pred             H
Q psy11135        160 V  160 (191)
Q Consensus       160 ~  160 (191)
                      .
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            4

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=3e-19  Score=140.22  Aligned_cols=155  Identities=21%  Similarity=0.220  Sum_probs=102.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc----cceEEEEEEEc-------------CeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDSYRKQVVID-------------GETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~   65 (191)
                      .--|+++|++++|||||+++|.+..+.....+..    +..+.......             .....+.+|||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3458999999999999999999887644332211    11111000000             011137899999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-------------CHHH
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-------------DMNQ  129 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~  129 (191)
                      .++..+++.+|++++|+|+++   +.+++.+.    .+.    ..+.|+++++||+|+....-             ..+.
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            999999999999999999987   44433332    122    23689999999999864110             0000


Q ss_pred             ------------HHHHHH------------Hc--CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        130 ------------AQELAE------------QF--NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       130 ------------~~~~~~------------~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                                  ..+++.            .+  .++++++||++|+|+++++.+|.....+
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                        011111            12  2689999999999999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0072|consensus

Probab=99.83  E-value=1.7e-20  Score=117.98  Aligned_cols=161  Identities=19%  Similarity=0.239  Sum_probs=119.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++.+|+++|-.|+||||++.++.-.+..... |+.+....   .+..++..+++||..|+-..+..|+.|+++.+++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            4789999999999999999888766655544 33332222   2334666789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      +|.+|.+........+..+...-+.....+++++||.|........+....+    .+...+.+++.||.+|+|++++.+
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~D  172 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMD  172 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHH
Confidence            9999988766665555555444445567899999999986533222222111    112226799999999999999999


Q ss_pred             HHHHHHHhh
Q psy11135        158 TLVREIKKD  166 (191)
Q Consensus       158 ~i~~~~~~~  166 (191)
                      |+.+.+.++
T Consensus       173 WL~~~l~~~  181 (182)
T KOG0072|consen  173 WLQRPLKSR  181 (182)
T ss_pred             HHHHHHhcc
Confidence            999888653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.7e-19  Score=118.56  Aligned_cols=154  Identities=18%  Similarity=0.258  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~   72 (191)
                      .-|+++|.++||||||||+|++.+ .+.....+..++.-..+.+++.   +.++|.||          .+.+......|+
T Consensus        25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL  101 (200)
T COG0218          25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYL  101 (200)
T ss_pred             cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence            358999999999999999999977 4444333333444444455554   57899999          455666777776


Q ss_pred             cc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC----CC--EEE
Q psy11135         73 RT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN----IP--FIK  143 (191)
Q Consensus        73 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~--~~~  143 (191)
                      ..   -.++++++|+..+-.-.  +   .++..+....+.|+++|+||+|..+...........++..+    ..  ++.
T Consensus       102 ~~R~~L~~vvlliD~r~~~~~~--D---~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~  176 (200)
T COG0218         102 EKRANLKGVVLLIDARHPPKDL--D---REMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL  176 (200)
T ss_pred             hhchhheEEEEEEECCCCCcHH--H---HHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence            55   46677888887743321  1   13334344458999999999999875444444455554443    22  788


Q ss_pred             eccCCCCCHHHHHHHHHHHHHh
Q psy11135        144 TSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      +|+..+.|++++.+.|.+.+.+
T Consensus       177 ~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         177 FSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EecccccCHHHHHHHHHHHhhc
Confidence            8999999999999999887764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=5e-19  Score=123.51  Aligned_cols=145  Identities=19%  Similarity=0.100  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC--c------------------------------cCCccceEEEEEEEcCeEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDE--Y------------------------------DPTIEDSYRKQVVIDGETAL   52 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~--~------------------------------~~~~~~~~~~~~~~~~~~~~   52 (191)
                      ||+++|++|+|||||+++|+...-...  .                              ..++.+.....+..++.  .
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence            689999999999999999975431111  0                              11111111122223333  4


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----CH
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-----DM  127 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~~  127 (191)
                      +.+|||||+.++.......+..+|++++|+|+++...-. ....+..+.. .  ...++++|+||+|+.....     ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~  154 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIV  154 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHH
Confidence            789999999887766666788999999999998753211 1111111211 1  1235788999999864211     12


Q ss_pred             HHHHHHHHHcCC---CEEEeccCCCCCHHHH
Q psy11135        128 NQAQELAEQFNI---PFIKTSAKTRMGVDDA  155 (191)
Q Consensus       128 ~~~~~~~~~~~~---~~~~~s~~~~~~v~~l  155 (191)
                      .+.+.+.+.++.   +++++||+++.|+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            234455566664   5899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=3.9e-19  Score=135.33  Aligned_cols=161  Identities=22%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCC---Ccc--CCccce-----------------EEEEEEEcC------eEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVD---EYD--PTIEDS-----------------YRKQVVIDG------ETAL   52 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~--~~~~~~-----------------~~~~~~~~~------~~~~   52 (191)
                      +++++|+++|+.++|||||+++|.+.....   +..  .|....                 +......++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            578999999999999999999997532110   000  000000                 000000011      1346


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHH
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQ  129 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~  129 (191)
                      +.+||+||++++..........+|++++++|+++..........+..+.. .  ...|+++++||+|+......   .++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            89999999999988877778889999999999864211112222222222 1  12478999999998752211   223


Q ss_pred             HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ...+.+..   +++++++|+++++|+++++++|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            33333332   578999999999999999999988764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=1.1e-18  Score=120.13  Aligned_cols=146  Identities=16%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------CCccC---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-----------DEYDP---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-----------~~~~~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      +.++|+++|+.++|||||+++|+.....           .+..+   ..+ +.......+......+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3689999999999999999999864100           00000   000 11111222333445578999999998887


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC---
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN---  138 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~---  138 (191)
                      .....+..+|++++|+|+...-.- .....+..+..    .+.| +++++||+|+.....    ..++...+....+   
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            777778899999999999764221 12233333332    3456 789999999864221    1123444444443   


Q ss_pred             --CCEEEeccCCCCCH
Q psy11135        139 --IPFIKTSAKTRMGV  152 (191)
Q Consensus       139 --~~~~~~s~~~~~~v  152 (191)
                        ++++++|+++|.|+
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence              68999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=4.9e-19  Score=135.86  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|++++|||||+++|+...  ....                              ...++.+...  ..++..
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~--~~~~~~   82 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAH--KKFETD   82 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeee--EEEecC
Confidence            46899999999999999999998443  1100                              0111111112  233444


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCCc----
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWA----  124 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----  124 (191)
                      .+.+.+|||||+.++.......+..+|++++|+|++++..+... ...+......   ...|+++++||+|+....    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHH
Confidence            56689999999988766555557889999999999873111111 1222222221   124699999999987511    


Q ss_pred             -cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHHH
Q psy11135        125 -VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       125 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l~  156 (191)
                       ...++..++.+..+     ++++++||++|.|+++..
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             11234455555555     469999999999998743

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=1.9e-18  Score=116.67  Aligned_cols=150  Identities=15%  Similarity=0.225  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChh----------hHHHHHHhhcc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQE----------EYSAMRDQYMR   73 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~   73 (191)
                      .|+++|.+|+|||||++.+.+........++... ........++   .+.+|||||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999955433322233221 1122222222   58899999943          23344444443


Q ss_pred             ---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH---HHHHHHH--HcCCCEEEec
Q psy11135         74 ---TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN---QAQELAE--QFNIPFIKTS  145 (191)
Q Consensus        74 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~--~~~~~~~~~s  145 (191)
                         ..+.+++++|.++..+.... .....+..    .+.|+++|+||+|+........   ......+  ....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               35678889988765322111 11222222    2479999999999864221111   1222222  2346899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~  162 (191)
                      ++++.++++++++|.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=9e-19  Score=138.07  Aligned_cols=157  Identities=17%  Similarity=0.249  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCCCcc---------C---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYD---------P---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~---------~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      +|+++|+.++|||||+++|+...  +.....         +   ..+ +.......+....+.+.+|||||+.++.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            68999999999999999998632  211110         0   001 11112223334456689999999999998889


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHH-------HHcCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELA-------EQFNIP  140 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~-------~~~~~~  140 (191)
                      .+++.+|++++|+|+.+.. ......++..+..    .++|.++|+||+|+.....  ..++...+.       ++..++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999997732 2334455555444    3679999999999865322  122333333       234578


Q ss_pred             EEEeccCCCC----------CHHHHHHHHHHHHHhh
Q psy11135        141 FIKTSAKTRM----------GVDDAFYTLVREIKKD  166 (191)
Q Consensus       141 ~~~~s~~~~~----------~v~~l~~~i~~~~~~~  166 (191)
                      ++++|+++|.          |+..+|+.|++.++..
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999996          7999999999988754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0096|consensus

Probab=99.82  E-value=7.2e-20  Score=120.43  Aligned_cols=161  Identities=27%  Similarity=0.511  Sum_probs=136.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++++++|..|.||||++++...+++-..+.++.+-........ +.+.+.+..|||+|++.+......++-...+.+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            68999999999999999999999999888988888555544443 44458899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ||++..-++.++..|...+.+.++  ++|+++.+||.|...+.+ ......+.+..++.+++.|++.+.|.+.-|-++.+
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar  166 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR  166 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc-ccccceeeecccceeEEeecccccccccchHHHhh
Confidence            999999999999999998887544  689999999999876442 23344556677889999999999999999999999


Q ss_pred             HHHhh
Q psy11135        162 EIKKD  166 (191)
Q Consensus       162 ~~~~~  166 (191)
                      .+...
T Consensus       167 Kl~G~  171 (216)
T KOG0096|consen  167 KLTGD  171 (216)
T ss_pred             hhcCC
Confidence            88653

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=8.2e-19  Score=134.59  Aligned_cols=149  Identities=16%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------Cc------cCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------EY------DPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~~------~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|+.++|||||+.+|+...  ...                        +.      ...+.+.  ....+...
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~--~~~~~~~~   83 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV--AHWKFETD   83 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE--EEEEEccC
Confidence            36899999999999999999998532  110                        00      0011111  11223444


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-c--
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI--GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-A--  124 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~--  124 (191)
                      .+.+.+|||||++++.......+..+|++++|+|+++.++....  ...+ .+....  ...|+++|+||+|+... .  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence            56689999999998876666667899999999999987432111  1111 122211  23579999999999641 1  


Q ss_pred             --cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135        125 --VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       125 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                        ...++...+++..+     ++++++||++|.|+.+.
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence              11344556666665     57999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=2.1e-18  Score=135.91  Aligned_cols=158  Identities=18%  Similarity=0.220  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCCcc------------CCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYD------------PTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMR   68 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   68 (191)
                      -+|+++|+.++|||||+++++...  +.....            .+.+ +.......++...+.+.+|||||+.++...+
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v   85 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV   85 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence            479999999999999999998632  222110            0111 1112223445556779999999999999999


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHH-------HcCC
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAE-------QFNI  139 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~-------~~~~  139 (191)
                      ..+++.+|++++|+|+.+.... ....++.....    .++|.++++||+|.......  .++...+..       ...+
T Consensus        86 ~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         86 ERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            9999999999999999874322 22333333333    36899999999998653221  222333321       2347


Q ss_pred             CEEEeccCCCC----------CHHHHHHHHHHHHHhh
Q psy11135        140 PFIKTSAKTRM----------GVDDAFYTLVREIKKD  166 (191)
Q Consensus       140 ~~~~~s~~~~~----------~v~~l~~~i~~~~~~~  166 (191)
                      |++++|+.+|.          ++..+++.|++.++..
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            89999999998          5899999999888754

>KOG0074|consensus

Probab=99.81  E-value=3.8e-19  Score=111.66  Aligned_cols=153  Identities=24%  Similarity=0.307  Sum_probs=116.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|-.++|||||+..|.+... ....||.+-.. ..+.. ...+.+.+||.+|+...+..|..||.+.|++|+|
T Consensus        16 rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV   92 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV   92 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence            589999999999999999999876553 33334444222 22222 3346689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--------CCEEEeccCCCCCHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--------IPFIKTSAKTRMGVD  153 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v~  153 (191)
                      +|.+|...++++..-+.++...-.....|+++..||.|+...    ...++.+.+.+        +.+-+||+..++|+.
T Consensus        93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            999999889988887777776566678999999999997642    22333333333        346779999999888


Q ss_pred             HHHHHHHH
Q psy11135        154 DAFYTLVR  161 (191)
Q Consensus       154 ~l~~~i~~  161 (191)
                      +-.+++..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            77777654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=1.6e-18  Score=137.21  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---CCCCcc--CCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH---FVDEYD--PTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGF   78 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   78 (191)
                      -|+++|+.++|||||+++|.+..   +..+..  .|....+. .... ++.  .+.+|||||++++.......+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            47899999999999999998643   222211  11111111 1212 233  378999999999877777778899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc---CHHHHHHHHHHcC---CCEEEeccCCCCC
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV---DMNQAQELAEQFN---IPFIKTSAKTRMG  151 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~---~~~~~~s~~~~~~  151 (191)
                      ++|+|+++...-. ..+.+..+..    .+.| +++|+||+|+.+...   ..++...+....+   .+++++|+++|.|
T Consensus        79 lLVVda~eg~~~q-T~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         79 LLVVACDDGVMAQ-TREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999998732111 1112222222    2345 689999999875221   1223344444444   6899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11135        152 VDDAFYTLVREIKK  165 (191)
Q Consensus       152 v~~l~~~i~~~~~~  165 (191)
                      ++++++.|.....+
T Consensus       154 I~~L~~~L~~~~~~  167 (614)
T PRK10512        154 IDALREHLLQLPER  167 (614)
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999875543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=6.8e-18  Score=133.07  Aligned_cols=155  Identities=22%  Similarity=0.242  Sum_probs=100.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC----ccceEEEEEEE---cCeEE----------EEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVI---DGETA----------LLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~----------~~~~~D~~g~~~~   64 (191)
                      ++..|+++|++++|||||+++|.+........+.    .+..+......   .+...          .+.+|||||++.+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4567999999999999999999876644333321    11111100000   01110          1678999999999


Q ss_pred             HHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----C--------HH
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-----D--------MN  128 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~--------~~  128 (191)
                      ...+...+..+|++++|+|+++   +.++..+..    +.    ..+.|+++++||+|+.....     .        ..
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            9888888899999999999987   444443322    11    23689999999999853100     0        00


Q ss_pred             H-----------HHHHHHHc---------------CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        129 Q-----------AQELAEQF---------------NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       129 ~-----------~~~~~~~~---------------~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      .           ........               .++++++|+.+|.|++++++.+...+.
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~  218 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ  218 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence            0           00011111               257999999999999999998865443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=1.7e-18  Score=122.73  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-----ccC-Ccc-----------ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDE-----YDP-TIE-----------DSYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~-----~~~-~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      +|+++|+.|+|||||+++++...-...     ... +..           +.......+......+.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986431100     000 000           011112233344556899999999999888


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ...+++.+|++++|+|.++.... ....++..+..    .+.|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence            88899999999999999885432 23344444433    3689999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.80  E-value=3.1e-18  Score=120.33  Aligned_cols=151  Identities=22%  Similarity=0.190  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------Ccc--c-eE---------EE---------EEEEc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDP----------------TIE--D-SY---------RK---------QVVID   47 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~--~-~~---------~~---------~~~~~   47 (191)
                      ||+++|+.++|||||++++....+......                +..  . ..         .+         ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999986543221100                000  0 00         00         00111


Q ss_pred             CeEEEEEEEeCCChhhHHHHHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         48 GETALLDILDTAGQEEYSAMRDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        48 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      .....+.++||||+.++.......+.  .+|++++|+|+.....- ....++..+.    ..+.|+++|+||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~----~~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLAL----ALNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHH----HcCCCEEEEEECccccCHHH
Confidence            22345889999999988765554453  68999999998764321 1122333222    34679999999999865322


Q ss_pred             CHHHHHHHHHHc-----------------------------CCCEEEeccCCCCCHHHHHHHHH
Q psy11135        126 DMNQAQELAEQF-----------------------------NIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus       126 ~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ..+...++.+.+                             .+|++.+|+.+|+|++++++.|.
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            222223232221                             24899999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=3.9e-18  Score=129.82  Aligned_cols=160  Identities=23%  Similarity=0.224  Sum_probs=99.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCcc--CCccce-----------------EEEEEEEc--C----eEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV---DEYD--PTIEDS-----------------YRKQVVID--G----ETALL   53 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~--~~~~~~-----------------~~~~~~~~--~----~~~~~   53 (191)
                      +.++|+++|+.++|||||+.+|.+....   .+..  .|....                 +......+  +    ....+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            4789999999999999999999653211   0000  011000                 00000001  0    12468


Q ss_pred             EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHH
Q psy11135         54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQ  129 (191)
Q Consensus        54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~  129 (191)
                      .+|||||+.++..........+|++++++|++++. .... ...+..+...   ...|+++|+||+|+.+....   .++
T Consensus        88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence            99999999888766555566789999999998642 1111 1122222221   12478999999999753221   123


Q ss_pred             HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ...+.+..   +++++++||+++.|++++++.|...+.+
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            33333332   4789999999999999999999887643

>KOG1423|consensus

Probab=99.80  E-value=5e-18  Score=120.05  Aligned_cols=161  Identities=18%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HH---HHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YS---AMRD   69 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~---~~~~   69 (191)
                      +.+.|+|+|.|++|||||.|.+.+..+.........++....-.+.....++.|+||||...         ..   ..-.
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~  150 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR  150 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence            35789999999999999999999998544333333333334444555666789999999321         11   1223


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC--------------ccC---HHHHHH
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW--------------AVD---MNQAQE  132 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~---~~~~~~  132 (191)
                      ..+..+|.+++++|+++......- ..+..+..+   ...|-++|+||.|....              .++   .+..+.
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            446679999999999973332111 122222222   35799999999997541              111   111112


Q ss_pred             HHHHc---------CC----CEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        133 LAEQF---------NI----PFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       133 ~~~~~---------~~----~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      +....         |+    .+|.+||+.|+|++++.++|..++...
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            21111         22    389999999999999999999887653

>cd04167 Snu114p Snu114p subfamily

Probab=99.79  E-value=3.3e-18  Score=119.89  Aligned_cols=112  Identities=24%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCCc------cceE---EEEEEE---cCeEEEEEEEeCCCh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEY-----------DPTI------EDSY---RKQVVI---DGETALLDILDTAGQ   61 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~   61 (191)
                      +|+++|+.|+|||||+++|+........           ..+.      +...   ......   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875532210           0000      0000   011111   355678999999999


Q ss_pred             hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      .++......++..+|++++++|+.+..+... ..++.....    .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888999999999999987655432 233333322    358999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG4423|consensus

Probab=99.78  E-value=1.2e-20  Score=123.80  Aligned_cols=164  Identities=27%  Similarity=0.456  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++++|+|..|+|||+++.+.....+...|..+.+..+ ...... +...+.+++||.+|++++..+..-+++.+++.++|
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV  105 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV  105 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence            6889999999999999999988877666666666222 222233 34446689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNI-PFIKTSAKTRMGVDDA  155 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l  155 (191)
                      ||++++.+++....|.+.+.+-..   ....|+++..||||..+...  ......+++++.|+ ..+++|++.+.++.|+
T Consensus       106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea  185 (229)
T KOG4423|consen  106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEA  185 (229)
T ss_pred             EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHH
Confidence            999999999999999998865432   23467899999999987333  34677888999996 6999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy11135        156 FYTLVREIKKDK  167 (191)
Q Consensus       156 ~~~i~~~~~~~~  167 (191)
                      -..+++.+.-..
T Consensus       186 ~r~lVe~~lvnd  197 (229)
T KOG4423|consen  186 QRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHhhc
Confidence            999998887654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.3e-17  Score=126.50  Aligned_cols=156  Identities=19%  Similarity=0.175  Sum_probs=99.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------C------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------E------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      +.++|+++|+.++|||||+++|++.....           +      ....+.+  .....+......+.++||||+.++
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~--~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITIN--TAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEE--EEeeEecCCCcEEEEEECCCHHHH
Confidence            46899999999999999999998632100           0      0011111  112233334445789999999988


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVD----MNQAQELAEQFN-  138 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~~~-  138 (191)
                      .......+..+|++++|+|++....-. ....+..+..    .+.| +++++||+|+...+..    .++...+.+..+ 
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            776666678899999999998632211 1222222222    2567 6789999998742211    223444444454 


Q ss_pred             ----CCEEEeccCCCC--------CHHHHHHHHHHHHH
Q psy11135        139 ----IPFIKTSAKTRM--------GVDDAFYTLVREIK  164 (191)
Q Consensus       139 ----~~~~~~s~~~~~--------~v~~l~~~i~~~~~  164 (191)
                          ++++++|++++.        ++.++++.|.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                589999999983        56777777766654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=1.5e-17  Score=116.90  Aligned_cols=144  Identities=19%  Similarity=0.115  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-C-------------------------Ccc------CCccceEEEEEEEcCeEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV-D-------------------------EYD------PTIEDSYRKQVVIDGETAL   52 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~-~-------------------------~~~------~~~~~~~~~~~~~~~~~~~   52 (191)
                      +|+++|+.++|||||+.+|+...-. .                         +..      .++.+.....  +......
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--~~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--FETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE--EeeCCeE
Confidence            4899999999999999999643210 0                         000      0111111222  2333455


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh------HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS------FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                      +.+|||||+..+.......+..+|++++|+|+++...      .......+.....   ....|+++++||+|+......
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEcccccccccc
Confidence            8999999998877766667788999999999988421      1111122222211   123689999999998742111


Q ss_pred             -------HHHHHHHHHHcC-----CCEEEeccCCCCCHH
Q psy11135        127 -------MNQAQELAEQFN-----IPFIKTSAKTRMGVD  153 (191)
Q Consensus       127 -------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  153 (191)
                             .+++..+....+     ++++++||++|.|++
T Consensus       156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                   112222334443     569999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.77  E-value=1.4e-17  Score=115.32  Aligned_cols=159  Identities=15%  Similarity=0.158  Sum_probs=94.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc---eEEEEEEEcCeEEEEEEEeCCChhhHHH-----HHHhhccc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED---SYRKQVVIDGETALLDILDTAGQEEYSA-----MRDQYMRT   74 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~   74 (191)
                      ++||+++|.+|+|||||+|++.+.........+++.   ..............+.+||+||..+...     .....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986543221111110   0000001111122478999999653211     22233667


Q ss_pred             CCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--------CHHH-HHHH-------HHHc
Q psy11135         75 GEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--------DMNQ-AQEL-------AEQF  137 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~-~~~~-------~~~~  137 (191)
                      +|+++++.+- .   +... ..++..+...    +.|+++|+||+|+.....        ..++ ..++       ....
T Consensus        81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          81 YDFFIIISST-R---FSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             cCEEEEEeCC-C---CCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            8888887432 2   2222 3344444442    579999999999853111        1111 1111       1122


Q ss_pred             C---CCEEEeccC--CCCCHHHHHHHHHHHHHhhhhh
Q psy11135        138 N---IPFIKTSAK--TRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       138 ~---~~~~~~s~~--~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      +   .++|.+|+.  .++++..+.+.++..|.+.+..
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            2   368889998  5799999999999999876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2262 HflX GTPases [General function prediction only]

Probab=99.77  E-value=7.9e-17  Score=118.49  Aligned_cols=154  Identities=21%  Similarity=0.237  Sum_probs=110.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcC-eEEEEEEEeCCCh---------hhHHHHHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG-ETALLDILDTAGQ---------EEYSAMRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~   72 (191)
                      ..|.++|..++|||||+|++++... ..+....+-+.......+.+ ..  +.+-||.|-         +.+.++.+. .
T Consensus       193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksTLEE-~  269 (411)
T COG2262         193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKSTLEE-V  269 (411)
T ss_pred             CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHHHHH-h
Confidence            4689999999999999999997763 34444444444444455553 44  678999992         234444444 5


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|.++.|+|++++.....+......+.. ......|+++|.||+|+.....   ....+.+... ..+.+||+++.|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~-~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADEIPIILVLNKIDLLEDEE---ILAELERGSP-NPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCCCCEEEEEecccccCchh---hhhhhhhcCC-CeEEEEeccCcCH
Confidence            679999999999999777777666655555 3445699999999999875332   1222222222 6899999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11135        153 DDAFYTLVREIKK  165 (191)
Q Consensus       153 ~~l~~~i~~~~~~  165 (191)
                      +.+.+.|...+..
T Consensus       345 ~~L~~~i~~~l~~  357 (411)
T COG2262         345 DLLRERIIELLSG  357 (411)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998874

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=6.1e-17  Score=115.84  Aligned_cols=158  Identities=23%  Similarity=0.197  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-----hHHHHHH----hhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-----EYSAMRD----QYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~----~~~~   73 (191)
                      .-|+|.|.||||||||++.+++.. -..+|+.|+....-..+..++..  ++++||||.-     +.+.+-.    ..-.
T Consensus       169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R--~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR--IQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce--EEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            458899999999999999999877 67889888876666655445445  8899999932     2222111    1122


Q ss_pred             cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         74 TGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                      -.++++|+||.+...  +++....++..+....   +.|+++|+||+|....+.-.+....+...-+.....+++..+.+
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG  323 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence            378899999998743  5666667777776532   37999999999987533222222233333344578888899999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11135        152 VDDAFYTLVREIKKD  166 (191)
Q Consensus       152 v~~l~~~i~~~~~~~  166 (191)
                      ++.+-..+.....+.
T Consensus       324 ~d~~~~~v~~~a~~~  338 (346)
T COG1084         324 LDKLREEVRKTALEP  338 (346)
T ss_pred             HHHHHHHHHHHhhch
Confidence            888887777765443

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=3e-17  Score=118.24  Aligned_cols=129  Identities=16%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCcc---------C-Ccc-----------ceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYD---------P-TIE-----------DSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~---------~-~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      +|+++|++|+|||||+++|+...-.....         . +..           +.......++...+.+.+|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            68999999999999999998532110000         0 000           11122234455566789999999998


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI  139 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  139 (191)
                      +.......++.+|++++|+|+++.... ....++...    ...++|+++++||+|+..... .+...++...++.
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~----~~~~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~~  153 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC----RLRGIPIITFINKLDREGRDP-LELLDEIEEELGI  153 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH----HhcCCCEEEEEECCccCCCCH-HHHHHHHHHHHCC
Confidence            887777778999999999999874321 122333222    234689999999999865332 2234455555554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=6.3e-17  Score=113.30  Aligned_cols=111  Identities=21%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccC----------------CccceEEEEEEEc--------CeEEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVID--------GETALLDILDT   58 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~~--------~~~~~~~~~D~   58 (191)
                      +|+++|+.++|||||+.+|+...-  ......                +... ......+.        +..+.+.+|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~-~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKS-SAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhcccccc-ceEEEEEecCcccccCCCceEEEEECC
Confidence            689999999999999999985431  100000                0000 00111222        44678999999


Q ss_pred             CChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      ||+.++.......++.+|++++|+|+.+...... ...+....    ..+.|+++|+||+|+.
T Consensus        81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~----~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999988654332 22222222    2357999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1489|consensus

Probab=99.76  E-value=2.3e-17  Score=117.24  Aligned_cols=152  Identities=22%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcccCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMRTGE   76 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~   76 (191)
                      |.++|.|++|||||++++...+ -..+|..|+-...-....+++... +.+-|.||.-+-.+        .+++ ++.++
T Consensus       199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGlG~~FLrH-iER~~  276 (366)
T KOG1489|consen  199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGLGYKFLRH-IERCK  276 (366)
T ss_pred             cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcccHHHHHH-HHhhc
Confidence            5689999999999999999776 456666665533333344444332 88899999554322        2222 66799


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC-EEEeccCCCCC
Q psy11135         77 GFLLVFAVNSM---KSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP-FIKTSAKTRMG  151 (191)
Q Consensus        77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~  151 (191)
                      .+++|+|++..   +.|+.+..++.++..|. ...+.|.++|+||+|+.+.  ......++++.+.-+ ++++||+.+++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCCCcEEEeeeccccc
Confidence            99999999998   88888888888886654 3457899999999998531  112246777777654 99999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        152 VDDAFYTLVR  161 (191)
Q Consensus       152 v~~l~~~i~~  161 (191)
                      +.++++.|.+
T Consensus       355 l~~ll~~lr~  364 (366)
T KOG1489|consen  355 LEELLNGLRE  364 (366)
T ss_pred             hHHHHHHHhh
Confidence            9999988754

>KOG1707|consensus

Probab=99.75  E-value=1.3e-17  Score=126.77  Aligned_cols=162  Identities=25%  Similarity=0.396  Sum_probs=116.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++++||+++|..|+||||||-++...+++..-++-.+ .+..........+...++|++.....+......++.++++.+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            4789999999999999999999999998766544333 222223333344447899998766666666777999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhc-CCCCCcEEEEEecCCCCCCccC-HHH-HHHHHHHcC-C-CEEEeccCCCCCHHH
Q psy11135         81 VFAVNSMKSFEDIG-SYREQIKRVK-DAEEVPMVLVGNKCDLSTWAVD-MNQ-AQELAEQFN-I-PFIKTSAKTRMGVDD  154 (191)
Q Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~-~~~-~~~~~~~~~-~-~~~~~s~~~~~~v~~  154 (191)
                      +|+++++++++.+. .|+..++... ...+.|+|+|+||.|....... .+. ...+-.++. + ..++|||++-.++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            99999999999996 5665555432 2357999999999999873222 122 222222222 1 358899999999999


Q ss_pred             HHHHHHHHH
Q psy11135        155 AFYTLVREI  163 (191)
Q Consensus       155 l~~~i~~~~  163 (191)
                      +|....+++
T Consensus       166 ~fYyaqKaV  174 (625)
T KOG1707|consen  166 LFYYAQKAV  174 (625)
T ss_pred             hhhhhhhee
Confidence            998766655

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=1.5e-16  Score=120.99  Aligned_cols=142  Identities=18%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF-----------VDEY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      +.++|+++|+.++|||||+++|++...           ..+.      ...+-+  .....++.....+.+|||||++++
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHHH
Confidence            468999999999999999999974310           0000      111111  122334444556889999999988


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQFN-  138 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~~-  138 (191)
                      ..........+|++++|+|+.+..... ..+.+..+..    .+.|.+ +++||+|+.+....    .++...+.+.++ 
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            766666677889999999998732211 1222222222    256655 68999998752211    234555666655 


Q ss_pred             ----CCEEEeccCCCC
Q psy11135        139 ----IPFIKTSAKTRM  150 (191)
Q Consensus       139 ----~~~~~~s~~~~~  150 (191)
                          ++++++|+.++.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=5.6e-17  Score=123.67  Aligned_cols=143  Identities=18%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------Cc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------EY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      +.++|+++|++++|||||+++|++.....           +.      ...+.+.  ....+......+.++||||+.++
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHHH
Confidence            46899999999999999999998642110           00      0010011  11123333445789999999888


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVD----MNQAQELAEQFN-  138 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~~~-  138 (191)
                      .......+..+|++++++|+...-.- .....+..+..    .+.| +++++||+|+......    .+++..+.+..+ 
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            77777778899999999999763221 12222222222    3568 7789999999752211    123444444443 


Q ss_pred             ----CCEEEeccCCCCC
Q psy11135        139 ----IPFIKTSAKTRMG  151 (191)
Q Consensus       139 ----~~~~~~s~~~~~~  151 (191)
                          ++++++|+.+|.+
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 PGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCcceEEEcchhhccc
Confidence                6899999998874

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=5.7e-17  Score=123.15  Aligned_cols=158  Identities=16%  Similarity=0.162  Sum_probs=99.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-------C----CCCccC---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-------F----VDEYDP---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~----~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      +.++|+++|++++|||||+++|++..       .    ..+..+   ..+ +.......+......+.++||||+.++..
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            46899999999999999999998621       0    000000   000 01111122333344578999999998877


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHcC---
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQFN---  138 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~~---  138 (191)
                      .....+..+|++++++|+.+.... ...+.+..+.    ..+.|.+ +++||+|+......    .++...+.+.++   
T Consensus        91 ~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~  165 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADGPMP-QTREHILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence            666778899999999999873221 1122332222    2356755 67999998742211    124445555553   


Q ss_pred             --CCEEEeccCCCC----------CHHHHHHHHHHHHH
Q psy11135        139 --IPFIKTSAKTRM----------GVDDAFYTLVREIK  164 (191)
Q Consensus       139 --~~~~~~s~~~~~----------~v~~l~~~i~~~~~  164 (191)
                        ++++++|+.++.          ++.+++++|.+.+.
T Consensus       166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence              679999999984          56777777776554

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=2.3e-17  Score=115.44  Aligned_cols=161  Identities=16%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCcc--CCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-----HHHhhcccCCE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-----MRDQYMRTGEG   77 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~   77 (191)
                      ||+++|+.++||||+.+.++.+-.+.+..  .++........ .......+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v-~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHV-RFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEE-ECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEE-ecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999998776543322  22222222222 223444689999999875433     46778999999


Q ss_pred             EEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC-------HHHHHHHHHHcC---CCEEEe
Q psy11135         78 FLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-------MNQAQELAEQFN---IPFIKT  144 (191)
Q Consensus        78 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~---~~~~~~  144 (191)
                      +|+|+|+...+   .+..+...+..+..+  .+++.+.+.++|+|+......       .+...+.....+   +.++.+
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            99999998533   334444444444443  568899999999998762211       112223334445   678889


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        145 SAKTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      |..+ +.+-++|..+++.+.++...
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP~~~~  181 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIPNLST  181 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred             cCcC-cHHHHHHHHHHHHHcccHHH
Confidence            9877 68899999999988765443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.6e-16  Score=120.29  Aligned_cols=158  Identities=24%  Similarity=0.271  Sum_probs=112.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..=|.++|+...|||||+..+.+........+....+. .+....+. ....+.|+|||||+.|..++.....-+|.+++
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            34578999999999999999998887665555444433 22333331 22348899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH------HHHcC--CCEEEeccCCCCCH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL------AEQFN--IPFIKTSAKTRMGV  152 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~~v  152 (191)
                      ++++++.-.....     +-..+.+..+.|++|++||+|..+.+.. ....++      .+.|+  ..++++||++|+|+
T Consensus        85 VVa~dDGv~pQTi-----EAI~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi  158 (509)
T COG0532          85 VVAADDGVMPQTI-----EAINHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI  158 (509)
T ss_pred             EEEccCCcchhHH-----HHHHHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence            9999993222211     1122234568999999999999852211 111111      33343  46999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy11135        153 DDAFYTLVREIKKD  166 (191)
Q Consensus       153 ~~l~~~i~~~~~~~  166 (191)
                      ++++..++-...-.
T Consensus       159 ~eLL~~ill~aev~  172 (509)
T COG0532         159 DELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988776655

>cd01850 CDC_Septin CDC/Septin

Probab=99.74  E-value=6.5e-17  Score=117.03  Aligned_cols=140  Identities=21%  Similarity=0.304  Sum_probs=85.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhH-------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE----------YDPTIE-DSYRKQVVIDGETALLDILDTAGQEEY-------   64 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~-------   64 (191)
                      .++|+|+|..|+|||||+|++++..+...          ..++.. .........++..+.+.+|||||..+.       
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            68999999999999999999998875432          122222 222333445677788999999993211       


Q ss_pred             H-----------H--------HHHhhcc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         65 S-----------A--------MRDQYMR--TGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        65 ~-----------~--------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .           .        .+...+.  .+|+++++++.+.. .+... ...++.+.     ...|+++|+||+|+..
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~  157 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence            0           0        0112233  25666666665531 11111 22222222     2589999999999865


Q ss_pred             C---ccCHHHHHHHHHHcCCCEEEeccCC
Q psy11135        123 W---AVDMNQAQELAEQFNIPFIKTSAKT  148 (191)
Q Consensus       123 ~---~~~~~~~~~~~~~~~~~~~~~s~~~  148 (191)
                      .   ....+...+.++.+++++|......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            1   1234445666778889988776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.7e-16  Score=113.28  Aligned_cols=156  Identities=22%  Similarity=0.222  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-------HHHhhcccC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-------MRDQYMRTG   75 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~   75 (191)
                      -.++++|+|++|||||++.|++.+ -..+|..|+.+.......+++..  +++.|+||.-+-.+       ..-...++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            368999999999999999999887 56788888877777766777666  89999999554332       223457889


Q ss_pred             CEEEEEEeCCChhh-HHHHHHHHHHHH-hhcC------------------------------------------------
Q psy11135         76 EGFLLVFAVNSMKS-FEDIGSYREQIK-RVKD------------------------------------------------  105 (191)
Q Consensus        76 ~~~i~v~d~~~~~s-~~~~~~~~~~~~-~~~~------------------------------------------------  105 (191)
                      |.+++|+|+....+ .+.+...+...- ....                                                
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir  221 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR  221 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence            99999999987654 333332221110 0000                                                


Q ss_pred             ---------------CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        106 ---------------AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       106 ---------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                                     ..=+|-++|.||+|+..    .++...+.+..  .++++|+..+.|++++.+.|.+.+.--+
T Consensus       222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR  292 (365)
T COG1163         222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR  292 (365)
T ss_pred             cCCcHHHHHHHHhhcceeeeeEEEEecccccC----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence                           00128899999999864    55555565555  7899999999999999999999886433

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.73  E-value=2e-16  Score=100.52  Aligned_cols=104  Identities=22%  Similarity=0.343  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHHHHHhhc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSAMRDQYM   72 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~   72 (191)
                      +|+|+|.+|+|||||+|+|++...  .....+++..........++..  +.++||||...          ....... +
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-I   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-H
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-H
Confidence            689999999999999999998642  3444455554444445566666  56899999532          1223344 4


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK  117 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  117 (191)
                      ..+|++++|+|..++.. +....++..+    . .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence            78999999999877321 2233333333    2 47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1e-16  Score=112.17  Aligned_cols=159  Identities=18%  Similarity=0.256  Sum_probs=105.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cC-CccceEEEEEEEcCeEEEEEEEeCCChhh-------HHHHHHhhc
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DP-TIEDSYRKQVVIDGETALLDILDTAGQEE-------YSAMRDQYM   72 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~   72 (191)
                      ++++|+++|..|+||||++|+|++++..... .+ +++........++++.  +.+||+||..+       ++.....++
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHHh
Confidence            4789999999999999999999976643222 11 2222222233456655  78999999554       566667778


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---------cCHH-------HHHHHHHH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---------VDMN-------QAQELAEQ  136 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~-------~~~~~~~~  136 (191)
                      ...|.++++.++.++.---.. +.++.+....  -+.++++++|.+|...+-         -+..       .+....+.
T Consensus       116 ~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            889999999999886532222 2333333222  137999999999975421         1111       11111121


Q ss_pred             cC--CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        137 FN--IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       137 ~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ..  -|++.++...++|++.+..+++..+..
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            11  378888889999999999999998864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.72  E-value=1.8e-15  Score=104.80  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCc--cCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------H---HHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEY--DPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------A---MRD   69 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~---~~~   69 (191)
                      ++|+++|.+|+|||||+|++++.... ...  .+.+..........++..  +.++||||..+..        .   ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999988732 221  233333333334455554  7889999955321        1   112


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCcc-------CHHHHHHHHHHcCCCE
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAV-------DMNQAQELAEQFNIPF  141 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~  141 (191)
                      ......|++++|.++.+...  .-...+..+..... ..-.++++|.|++|......       .....+.+.+.++-.+
T Consensus        79 ~~~~g~~~illVi~~~~~t~--~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRFTE--EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCcCH--HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22456899999999987221  11222333332211 11248899999999765321       1244566667777777


Q ss_pred             EEecc-----CCCCCHHHHHHHHHHHHHh
Q psy11135        142 IKTSA-----KTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       142 ~~~s~-----~~~~~v~~l~~~i~~~~~~  165 (191)
                      +..+.     ..+.+++++++.|...+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            66654     4567788888888887776

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.71  E-value=6.5e-16  Score=120.55  Aligned_cols=113  Identities=17%  Similarity=0.203  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CC---------------CCccCC---cc-ceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FV---------------DEYDPT---IE-DSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~---------------~~~~~~---~~-~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      -+|+++|+.++|||||+++|+...  ..               .++.+.   .+ ........++...+.+.+|||||+.
T Consensus        11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~   90 (526)
T PRK00741         11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE   90 (526)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence            389999999999999999997422  10               000000   00 0111122344445668999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      ++.......+..+|++++|+|+++.-.. ....++..    ....++|+++++||+|+.
T Consensus        91 df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         91 DFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRD  144 (526)
T ss_pred             hhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCccc
Confidence            9888777788999999999999874211 12233322    233578999999999974

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=1.1e-15  Score=117.48  Aligned_cols=148  Identities=16%  Similarity=0.125  Sum_probs=96.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC--CC------------------------CccCCc---c-ceEEEEEEEcCeEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VD------------------------EYDPTI---E-DSYRKQVVIDGETA   51 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~------------------------~~~~~~---~-~~~~~~~~~~~~~~   51 (191)
                      +.++|+++|+.++|||||+.+|+...-  ..                        +..+..   + +.......+.....
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            357899999999999999999874221  00                        000000   0 00011122344455


Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCC
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFE-------DIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTW  123 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~  123 (191)
                      .+.++|+||+.+|.......+..+|++++|+|+++. .++       .....+....    ..++ ++++++||+|+...
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~----~~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF----TLGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH----HcCCCcEEEEEEcccCCch
Confidence            689999999999998888889999999999999873 121       2222222222    2355 47889999997632


Q ss_pred             ccC-------HHHHHHHHHHcC-----CCEEEeccCCCCCHHH
Q psy11135        124 AVD-------MNQAQELAEQFN-----IPFIKTSAKTRMGVDD  154 (191)
Q Consensus       124 ~~~-------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  154 (191)
                      ..+       .++++.+.++.|     ++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            221       344566666666     6799999999999853

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=4.7e-16  Score=111.85  Aligned_cols=160  Identities=24%  Similarity=0.285  Sum_probs=111.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHH--------HHHhhcccC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSA--------MRDQYMRTG   75 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~   75 (191)
                      |.++|.|++|||||++++...+ -..+|+.|+-......+.+ .+..  +.+-|.||.-+-.+        .+++ ++.+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~s--fv~ADIPGLIEGAs~G~GLG~~FLrH-IERt  238 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGES--FVVADIPGLIEGASEGVGLGLRFLRH-IERT  238 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCc--EEEecCcccccccccCCCccHHHHHH-HHhh
Confidence            5689999999999999999776 5677877776544444444 3333  77899999654332        2333 5678


Q ss_pred             CEEEEEEeCCChhh---HHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCC-ccCHHHHHHHHHHcCCC-EEEeccCCC
Q psy11135         76 EGFLLVFAVNSMKS---FEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNIP-FIKTSAKTR  149 (191)
Q Consensus        76 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~-~~~~s~~~~  149 (191)
                      .++++++|++..+.   .+.......++..|. ...+.|.+||+||+|+... +........+.+..+.. ++++|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            89999999987553   455555556665552 3457899999999996542 22222233444444543 223999999


Q ss_pred             CCHHHHHHHHHHHHHhhhh
Q psy11135        150 MGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~~~~  168 (191)
                      .|++++...+.+.+.+.+.
T Consensus       319 ~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         319 EGLDELLRALAELLEETKA  337 (369)
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            9999999999999988764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=7.7e-16  Score=117.31  Aligned_cols=147  Identities=20%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCc-----------cCCc--------------c------ceEEEEEEEcCeEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEY-----------DPTI--------------E------DSYRKQVVIDGETA   51 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~-----------~~~~--------------~------~~~~~~~~~~~~~~   51 (191)
                      ++|+++|+.++|||||+.+|+...- ....           ..+.              .      +.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999974431 1000           0100              0      00011112223334


Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC-----
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-----  126 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----  126 (191)
                      .+.++||||++++.......+..+|++++|+|+.....-... +.+..+.. ..  ..++++++||+|+......     
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~-~~--~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASL-LG--IRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHH-cC--CCcEEEEEEecccccchHHHHHHH
Confidence            688999999999877666678899999999999764321111 11111211 11  2468999999998752211     


Q ss_pred             HHHHHHHHHHcC---CCEEEeccCCCCCHHH
Q psy11135        127 MNQAQELAEQFN---IPFIKTSAKTRMGVDD  154 (191)
Q Consensus       127 ~~~~~~~~~~~~---~~~~~~s~~~~~~v~~  154 (191)
                      .++...+.+..+   ++++++|+++|+|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            122233334444   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.70  E-value=1e-15  Score=116.32  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=97.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC---C--------C------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV---D--------E------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      +.++|+++|+.++|||||+++|++....   .        +      ....+.+  .....+......+.++||||+.++
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHHH
Confidence            4789999999999999999999863210   0        0      0011111  112223333445789999999988


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHc--
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQF--  137 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~--  137 (191)
                      .......+..+|++++++|+.....- .....+..+..    .+.|.+ +++||+|+......    ..+...+....  
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            77777778899999999999774221 12233333322    357875 68999998742111    12333344433  


Q ss_pred             ---CCCEEEeccCCCC----------CHHHHHHHHHHHH
Q psy11135        138 ---NIPFIKTSAKTRM----------GVDDAFYTLVREI  163 (191)
Q Consensus       138 ---~~~~~~~s~~~~~----------~v~~l~~~i~~~~  163 (191)
                         +++++++|+.++.          ++..++++|.+.+
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence               3689999999865          4566666666554

>KOG1145|consensus

Probab=99.70  E-value=8.9e-16  Score=116.27  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE---EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -|.+||+...|||||+.++.+..+.....+......   ....+ ++..  +.|.|||||..|..++.....-.|++++|
T Consensus       155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            467999999999999999998886655444443332   23233 4544  78899999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHH------HHHcC--CCEEEeccCCCCCH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QEL------AEQFN--IPFIKTSAKTRMGV  152 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~------~~~~~--~~~~~~s~~~~~~v  152 (191)
                      +.++|.-     .....+...+....+.|+++.+||+|.....  .+.. +++      .+.+|  ++++++||++|.|+
T Consensus       232 VAadDGV-----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  232 VAADDGV-----MPQTLEAIKHAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEccCCc-----cHhHHHHHHHHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            9998832     2222233344566789999999999976522  2222 222      23444  57999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhh
Q psy11135        153 DDAFYTLVREIKKDKMLRGK  172 (191)
Q Consensus       153 ~~l~~~i~~~~~~~~~~~~~  172 (191)
                      +.+.++++-...-....-.+
T Consensus       305 ~~L~eaill~Ae~mdLkA~p  324 (683)
T KOG1145|consen  305 DLLEEAILLLAEVMDLKADP  324 (683)
T ss_pred             HHHHHHHHHHHHHhhcccCC
Confidence            99999987666544433333

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=7.9e-16  Score=118.69  Aligned_cols=145  Identities=21%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC------CCCc-----cC---Cccce-EEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF------VDEY-----DP---TIEDS-YRKQVVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~------~~~~-----~~---~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      +.++|+++|+.++|||||+++|+....      ...+     .+   ..+.. ......++.....+.++|+||++++..
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~  159 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK  159 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence            468999999999999999999985321      0000     00   00000 011112223334578999999999887


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCH----HHHHHHHHHc----
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDM----NQAQELAEQF----  137 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~----~~~~~~~~~~----  137 (191)
                      .....+..+|++++|+|+.+..... ..+.+..+..    .++| +++++||+|+.+.+...    ++...+.+..    
T Consensus       160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            7777788999999999998643222 2233333322    3567 78899999987522111    2334444443    


Q ss_pred             -CCCEEEeccCCCCC
Q psy11135        138 -NIPFIKTSAKTRMG  151 (191)
Q Consensus       138 -~~~~~~~s~~~~~~  151 (191)
                       .++++++|+.++.+
T Consensus       235 ~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        235 DDIPIISGSALLALE  249 (478)
T ss_pred             CcceEEEEEcccccc
Confidence             46799999988753

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.70  E-value=2e-15  Score=110.87  Aligned_cols=158  Identities=21%  Similarity=0.311  Sum_probs=98.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEE---------------------EcC-eEEEEEEEeCCCh-
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVV---------------------IDG-ETALLDILDTAGQ-   61 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~-   61 (191)
                      |+++|.++||||||++++++... ...++.++.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57899999999999999998763 34444433221111111                     122 3356999999997 


Q ss_pred             ---hhHHHHHHhh---cccCCEEEEEEeCCCh----------------hhHHHH----HHH--------HHH--------
Q psy11135         62 ---EEYSAMRDQY---MRTGEGFLLVFAVNSM----------------KSFEDI----GSY--------REQ--------   99 (191)
Q Consensus        62 ---~~~~~~~~~~---~~~~~~~i~v~d~~~~----------------~s~~~~----~~~--------~~~--------   99 (191)
                         ++...+...+   ++++|++++|+|+...                +.++.+    ..|        +..        
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               4444444443   8899999999999631                011111    111        000        


Q ss_pred             -----------HH--------------h--------------------hcCCCCCcEEEEEecCCCCCCccCHHHHHHHH
Q psy11135        100 -----------IK--------------R--------------------VKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA  134 (191)
Q Consensus       100 -----------~~--------------~--------------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  134 (191)
                                 +.              .                    .......|+++|+||.|+....   +....+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence                       00              0                    0012346999999999975321   1122232


Q ss_pred             HHc-CCCEEEeccCCCCCHHHHHH-HHHHHHHhh
Q psy11135        135 EQF-NIPFIKTSAKTRMGVDDAFY-TLVREIKKD  166 (191)
Q Consensus       135 ~~~-~~~~~~~s~~~~~~v~~l~~-~i~~~~~~~  166 (191)
                      ... ..+++++||+.+.+++++.+ .+.+.+++.
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            333 45799999999999999998 698888664

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0462|consensus

Probab=99.70  E-value=2.9e-16  Score=118.80  Aligned_cols=160  Identities=23%  Similarity=0.293  Sum_probs=115.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCC----------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDE----------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      ++.++-+...|||||..+|+...- ...                .--|...+....++.++..+.+.++|||||.++...
T Consensus        62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E  141 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE  141 (650)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence            456788899999999999974331 111                101222222333344577889999999999999999


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCCCEEEec
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ....+..++++++++|+...-.-.....++..+..     +..+|.|+||+|+...+.  -..+..++....+.+.+.+|
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS  216 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS  216 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence            99999999999999999885444444444444433     678999999999987332  22334444555566899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      |++|.|+++++++|++.+++....
T Consensus       217 AK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  217 AKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             eccCccHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999875443

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=4.1e-15  Score=107.78  Aligned_cols=133  Identities=19%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----cCCc-----------c-ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEY-----DPTI-----------E-DSYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----~~~~-----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      +|+++|++|+|||||+++++........     ..++           . ........+....+.+.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999754311110     0000           0 000011122223455889999999888888


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEE
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK  143 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  143 (191)
                      ....+..+|++++++|.++....... ..+..+.    ..+.|.++++||+|..... ..+...++.+.++.++++
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK~D~~~~~-~~~~~~~l~~~~~~~~~~  150 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINKMDRERAD-FDKTLAALQEAFGRPVVP  150 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCccCCCC-HHHHHHHHHHHhCCCeEE
Confidence            88889999999999999886544322 2222222    2368999999999987642 233445566666655443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.69  E-value=8.7e-16  Score=117.74  Aligned_cols=161  Identities=18%  Similarity=0.162  Sum_probs=100.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccC--CccceEEEE------------E--EEcC------------e-
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF---VDEYDP--TIEDSYRKQ------------V--VIDG------------E-   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~--~~~~~~~~~------------~--~~~~------------~-   49 (191)
                      +.++|.++|+...|||||+.+|.+...   ..+...  |..-.+...            .  ..+.            . 
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            368999999999999999999986432   111000  000000000            0  0000            0 


Q ss_pred             ---EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         50 ---TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        50 ---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                         ...+.++|+||++.+.......+..+|++++|+|+..........+.+..+.. ..  -.++++|+||+|+.+....
T Consensus       113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lg--i~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MK--LKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cC--CCcEEEEEecccccCHHHH
Confidence               13578999999999887777778899999999999873111111222222221 11  2468999999998752221


Q ss_pred             H---HHHHHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        127 M---NQAQELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       127 ~---~~~~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .   ++...+.+.   .+++++++||++|.|++.+++.|...+..
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            1   222222222   25789999999999999999999876654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=1.1e-15  Score=118.18  Aligned_cols=150  Identities=19%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc----------cCCcc--------------------ceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEY----------DPTIE--------------------DSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~----------~~~~~--------------------~~~~~~~~~~~~   49 (191)
                      ..++|+++|+.++|||||+.+|+...  .....          ..++.                    +.......+...
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~  105 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE  105 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence            46899999999999999999997543  11100          11110                    000111122333


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-CHH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMN  128 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~  128 (191)
                      ...+.++||||+..+.......+..+|++++|+|+...-.-..... +..... ..  ..|+++++||+|+..... ..+
T Consensus       106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~-lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATL-LG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHH-hC--CCceEEEEEeeccccchhHHHH
Confidence            4458899999998887665666789999999999976321111111 111111 11  247899999999874211 111


Q ss_pred             ----HHHHHHHHcC----CCEEEeccCCCCCHHHH
Q psy11135        129 ----QAQELAEQFN----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       129 ----~~~~~~~~~~----~~~~~~s~~~~~~v~~l  155 (191)
                          +...+.+..+    ++++++|+++|.|+.++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence                1222333333    67999999999998764

>PLN03127 Elongation factor Tu; Provisional

Probab=99.68  E-value=1.7e-15  Score=116.21  Aligned_cols=156  Identities=17%  Similarity=0.125  Sum_probs=95.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC------CC--C---CCc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN------HF--V---DEY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~------~~--~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      +.++|+++|+.++|||||+++|.+.      ..  .   .+.      ...+-+  .....+......+.++||||+.++
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccch
Confidence            4689999999999999999999732      10  0   000      111111  112233344456889999999988


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCHH----HHHHHHHHc--
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDMN----QAQELAEQF--  137 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~----~~~~~~~~~--  137 (191)
                      -.........+|++++++|+.+...- ...+.+..+.    ..+.| +++++||+|+.+.....+    +..++...+  
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            76666667789999999999764221 1122222222    23578 578999999875221111    222333332  


Q ss_pred             ---CCCEEEeccC---CCCC-------HHHHHHHHHHHHH
Q psy11135        138 ---NIPFIKTSAK---TRMG-------VDDAFYTLVREIK  164 (191)
Q Consensus       138 ---~~~~~~~s~~---~~~~-------v~~l~~~i~~~~~  164 (191)
                         .++++++|+.   ++.|       +.+++++|.+.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               3678888876   4444       6777777776654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=2.2e-15  Score=108.67  Aligned_cols=111  Identities=16%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccC------CccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVD-------------EYDP------TIEDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|++|+|||||+++++...-..             ++.+      .+-......+.+.  ...+.++||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence            58999999999999999997422100             0000      0001111122233  4558899999999888


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ......++.+|++++|+|..+...-. ....+..+.    ..++|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEECCCCCC
Confidence            88888899999999999997743211 122333332    24689999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.68  E-value=2e-15  Score=116.01  Aligned_cols=149  Identities=17%  Similarity=0.101  Sum_probs=92.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CC------------------------CCccCCcc----ceEEEEEEEcCeEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FV------------------------DEYDPTIE----DSYRKQVVIDGETA   51 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~------------------------~~~~~~~~----~~~~~~~~~~~~~~   51 (191)
                      +.++|+++|+.++|||||+.+|+...  ..                        .+..+...    +.......+.....
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            46899999999999999999997522  11                        00000000    00011122344455


Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---F---EDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA  124 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  124 (191)
                      .+.++|+||+.++.......+..+|++++|+|+....-   +   ....+.+..+.    ..++| +++++||+|.....
T Consensus        86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~----~~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF----TLGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH----HcCCCeEEEEEEccccccch
Confidence            68999999999998888888899999999999976420   0   11222222222    23555 67999999953211


Q ss_pred             c-------CHHHHHHHHHHcC-----CCEEEeccCCCCCHHH
Q psy11135        125 V-------DMNQAQELAEQFN-----IPFIKTSAKTRMGVDD  154 (191)
Q Consensus       125 ~-------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  154 (191)
                      .       ..++...+....+     ++++++|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1       1222333333333     5799999999999863

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=2.3e-16  Score=105.98  Aligned_cols=115  Identities=23%  Similarity=0.403  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHh---hcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQ---YMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~i~   80 (191)
                      .|+++|+.|+|||+|+..|..+.......+. ....  .... +.....+.++|+|||.+.+.....   +...+.+++|
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            5899999999999999999998655444333 2111  1112 122234789999999987764443   4778999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135         81 VFAVNS-MKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        81 v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~  122 (191)
                      |+|.+. +..+....+++-.+....  .....|++|++||.|+..
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999975 445555555554443322  346789999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=4.5e-15  Score=120.21  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CC-------ccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-------------DE-------YDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      ..+|+++|+.|+|||||+++|+...-.             .+       +..+.... .  ..+......+.+|||||+.
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~--~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-A--TSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-e--EEEEECCEEEEEEECCCcH
Confidence            358999999999999999999853210             00       00011111 1  1222334568999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ++......+++.+|++++|+|.++.........| ..+..    .++|+++|+||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence            9988889999999999999999886554433333 23322    3689999999999854

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=4.1e-15  Score=119.26  Aligned_cols=149  Identities=17%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC----------ccCCccceEEE--------------------EEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDE----------YDPTIEDSYRK--------------------QVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~----------~~~~~~~~~~~--------------------~~~~~~~   49 (191)
                      +.++|+++|++++|||||+++|+...-  ...          ...++.+.+..                    ...+...
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            368999999999999999999986541  110          11111111110                    1122223


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCH-
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDM-  127 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~-  127 (191)
                      ...+.++||||++++.......+..+|++++|+|+.....-.. ...+..+...   ...++++++||+|+... .... 
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh---CCCeEEEEEEecccccchhHHHH
Confidence            3357899999998877655666889999999999976422111 1111112221   12578999999998641 1111 


Q ss_pred             ---HHHHHHHHHcC---CCEEEeccCCCCCHHH
Q psy11135        128 ---NQAQELAEQFN---IPFIKTSAKTRMGVDD  154 (191)
Q Consensus       128 ---~~~~~~~~~~~---~~~~~~s~~~~~~v~~  154 (191)
                         .+...+.+.++   ++++++|+++|.|+.+
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence               12233334555   4699999999999874

>KOG1191|consensus

Probab=99.66  E-value=2.1e-15  Score=112.96  Aligned_cols=163  Identities=23%  Similarity=0.279  Sum_probs=112.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHH--------HHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSA--------MRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~   71 (191)
                      .++|+++|+||+|||||+|+|...+  +.++..+|+.+.....+.++|..  +.+.||+|..+ ...        .-..-
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence            5789999999999999999999887  67888899999988888888887  77899999765 111        22234


Q ss_pred             cccCCEEEEEEeC--CChhhHHHHHHHHHHHHhh-----cCCCCCcEEEEEecCCCCCC--ccCHHHHHHHHHHcC---C
Q psy11135         72 MRTGEGFLLVFAV--NSMKSFEDIGSYREQIKRV-----KDAEEVPMVLVGNKCDLSTW--AVDMNQAQELAEQFN---I  139 (191)
Q Consensus        72 ~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~---~  139 (191)
                      +..+|++++++|.  ++-++-..+...+.....-     +...+.|+++++||.|+...  ....... .+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~-~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV-VYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce-eccccccCccc
Confidence            6679999999999  3333222222333322211     12245789999999999763  2221111 1111112   2


Q ss_pred             C-EEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        140 P-FIKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       140 ~-~~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                      + ..++|+.++++++++..++.+.+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 4559999999999999999988865443

>KOG0077|consensus

Probab=99.65  E-value=2.3e-15  Score=97.32  Aligned_cols=154  Identities=18%  Similarity=0.250  Sum_probs=110.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .=|++++|-.++|||||++.|.........+...++  .....+.+-.  ++-+|.+|+..-+..|..++..++++++.+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~m~--ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGGMT--FTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecCce--EEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            348999999999999999999876633222111111  1123455555  677999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH---Hc-----------C---CCEEEec
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE---QF-----------N---IPFIKTS  145 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~-----------~---~~~~~~s  145 (191)
                      |+-+.+.+.+.+..+..+...-.....|+++.+||+|..... +.++.+....   ..           +   +.++-||
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~-se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs  174 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA-SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS  174 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc-cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence            999999999888888777765555689999999999987633 4444322211   11           1   2356688


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVR  161 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~  161 (191)
                      ...+.+..+.|.++-.
T Consensus       175 i~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  175 IVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEccCccceeeeehhh
Confidence            8888777777776544

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.64  E-value=1.7e-14  Score=108.96  Aligned_cols=82  Identities=22%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEE---------------------Ec-CeEEEEEEEeCCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVV---------------------ID-GETALLDILDTAG   60 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~D~~g   60 (191)
                      ++|+++|.|++|||||+|+|++.... ..++.++.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987643 3554444222221111                     11 1235689999999


Q ss_pred             hh----hHHHHHHhh---cccCCEEEEEEeCC
Q psy11135         61 QE----EYSAMRDQY---MRTGEGFLLVFAVN   85 (191)
Q Consensus        61 ~~----~~~~~~~~~---~~~~~~~i~v~d~~   85 (191)
                      ..    +...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            43    333344444   88999999999996

>KOG0090|consensus

Probab=99.63  E-value=9.3e-15  Score=98.52  Aligned_cols=114  Identities=19%  Similarity=0.334  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcc---cCCEEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMR---TGEGFLLV   81 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i~v   81 (191)
                      .|+++|+.+||||+|+-.|..+.......+..+.  ...+.+.+..  ..++|.|||.+.+.-...++.   .+.+++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            5899999999999999999887654444332222  2223334444  788999999998876666666   68888898


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135         82 FAVNS-MKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        82 ~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~  122 (191)
                      +|... ........+++-.+....  .....|+++.+||.|+.-
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            88754 444455555555544333  356789999999999854

>PRK12739 elongation factor G; Reviewed

Probab=99.63  E-value=2.6e-14  Score=115.63  Aligned_cols=112  Identities=19%  Similarity=0.206  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CC-----CC------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FV-----DE------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      .+|+++|+.++|||||+++|+...  ..     ..            ....+-+.....+.+++  ..+.++||||+.++
T Consensus         9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~f   86 (691)
T PRK12739          9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVDF   86 (691)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHHH
Confidence            479999999999999999997532  10     00            11111112222333444  45888999999988


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .......+..+|++++|+|+.+.-.... ...+..+    ...+.|.++++||+|+..
T Consensus        87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~----~~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         87 TIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA----DKYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCCCCC
Confidence            8788888999999999999987532221 1222222    234689999999999864

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.62  E-value=8.9e-15  Score=90.32  Aligned_cols=136  Identities=23%  Similarity=0.274  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----hhHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----EEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~~~~i~   80 (191)
                      ||+++|..|+|||||.+++.+...-  +..|..      +.++++.    .+||||.    ..+.+........+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7899999999999999999876631  111111      1222221    3799993    2333344455778999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +-.++++++...-        .+...-..|+|-|+||.|+.+ .-.....+.+..+.|. ++|++|+.++.|++++++.|
T Consensus        71 v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L  141 (148)
T COG4917          71 VHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAE-DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYL  141 (148)
T ss_pred             eecccCccccCCc--------ccccccccceEEEEecccccc-hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence            9999998763211        111122457999999999985 2334455667777776 79999999999999999987


Q ss_pred             HH
Q psy11135        160 VR  161 (191)
Q Consensus       160 ~~  161 (191)
                      ..
T Consensus       142 ~~  143 (148)
T COG4917         142 AS  143 (148)
T ss_pred             Hh
Confidence            54

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.61  E-value=1e-13  Score=96.99  Aligned_cols=160  Identities=15%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCc---cCCccceEEEEEEEcCeEEEEEEEeCCChhhH--------HHH---HH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVIDGETALLDILDTAGQEEY--------SAM---RD   69 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~   69 (191)
                      ++|+|+|..|+||||++|.+++.......   .+.+..........++..  +.++||||..+.        ..+   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999998843222   233333434444667766  788999993321        111   12


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEEecCCCCCCccC--------HHHHHHHHHHcCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLSTWAVD--------MNQAQELAEQFNIP  140 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~  140 (191)
                      ....+.+++++|+.++....  .-...+..+...... --..++||.|..|.......        ....+.+.+.++-.
T Consensus        79 ~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            23456899999999984321  111222222221111 12468999999987663321        12355677778888


Q ss_pred             EEEeccC------CCCCHHHHHHHHHHHHHhhh
Q psy11135        141 FIKTSAK------TRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       141 ~~~~s~~------~~~~v~~l~~~i~~~~~~~~  167 (191)
                      |+.++..      +...+.++++.|-..+.++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            9988877      34568888888888777654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1490|consensus

Probab=99.61  E-value=6.5e-15  Score=110.61  Aligned_cols=170  Identities=20%  Similarity=0.185  Sum_probs=119.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHH-----HHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAM-----RDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~-----~~~~~~~   74 (191)
                      .++++|.|++|||||++.+.... ...+|..|+..-+...  ++..-..++++||||..+    ....     .....+-
T Consensus       170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL  247 (620)
T KOG1490|consen  170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL  247 (620)
T ss_pred             eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence            46899999999999999998766 4566666665444443  333444578899999332    1111     1122233


Q ss_pred             CCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHH---HHHHHHHHcCCCEEEeccCC
Q psy11135         75 GEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMN---QAQELAEQFNIPFIKTSAKT  148 (191)
Q Consensus        75 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~---~~~~~~~~~~~~~~~~s~~~  148 (191)
                      ..+++|+.|++...  |...-..++..+...  ..+.|+|+|+||+|... ...+.+   ..+.+.+.-++++++.|..+
T Consensus       248 raaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~  325 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ  325 (620)
T ss_pred             hhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence            56789999998733  555555555555543  34789999999999977 333332   23455556669999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Q psy11135        149 RMGVDDAFYTLVREIKKDKMLRGKEKKKRG  178 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~  178 (191)
                      .+|+-++.......+...+..+.-+++...
T Consensus       326 eegVm~Vrt~ACe~LLa~RVE~Klks~~~~  355 (620)
T KOG1490|consen  326 EEGVMDVRTTACEALLAARVEQKLKSESRV  355 (620)
T ss_pred             hhceeeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999988877775544

>cd00066 G-alpha G protein alpha subunit

Probab=99.61  E-value=4.8e-14  Score=104.15  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      ..+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..+.......+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            345688999999999999999999999999999999874          3444445555555544444689999999999


Q ss_pred             CCCC------------C-----ccCHHHHHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        119 DLST------------W-----AVDMNQAQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       119 D~~~------------~-----~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      |+..            +     ....+.+..+...          ..+..+.++|.+..++..+|+++...+....
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9632            0     1123333332211          1244667888899999999999888877644

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=2.7e-14  Score=111.60  Aligned_cols=114  Identities=15%  Similarity=0.199  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCC---Cc-c----CCcc-----------ceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FVD---EY-D----PTIE-----------DSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~~---~~-~----~~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      -+|+++|++++|||||+++++...  ...   .. .    .+..           ........++...+.+.+|||||+.
T Consensus        12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~   91 (527)
T TIGR00503        12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE   91 (527)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence            489999999999999999986322  110   00 0    0000           0111223345556678999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ++.......+..+|++++|+|.++.-. .....++....    ..+.|+++++||+|+..
T Consensus        92 df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~----~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        92 DFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR----LRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH----hcCCCEEEEEECccccC
Confidence            888777777899999999999987321 12233333222    24689999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.60  E-value=7.3e-14  Score=113.10  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-----Cc--------------cCCccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVD-----EY--------------DPTIEDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|++++|||||+++|....-..     ..              .+++-......+.++  .+.+.+|||||+.++.
T Consensus        12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVDFT   89 (689)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcchh
Confidence            79999999999999999997432110     00              011111112223333  3458899999999887


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC----E
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP----F  141 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~----~  141 (191)
                      ......++.+|++++|+|+.+....... .++..+.    ..+.|+++++||+|+.... ..+...++.+.++..    .
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~  163 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPIQ  163 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEE
Confidence            7788889999999999999875433322 2222222    2368999999999987633 223344555554431    3


Q ss_pred             EEeccCCC
Q psy11135        142 IKTSAKTR  149 (191)
Q Consensus       142 ~~~s~~~~  149 (191)
                      +++|+..+
T Consensus       164 ipis~~~~  171 (689)
T TIGR00484       164 LPIGAEDN  171 (689)
T ss_pred             eccccCCC
Confidence            44554443

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=99.60  E-value=2.4e-13  Score=106.08  Aligned_cols=107  Identities=26%  Similarity=0.288  Sum_probs=70.7

Q ss_pred             EEEEEeCCChhhH-----HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-cc
Q psy11135         52 LLDILDTAGQEEY-----SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AV  125 (191)
Q Consensus        52 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~  125 (191)
                      .+.++||||.+..     .......+..+|++++++|..+.-+... ....+.+...  ....|+++|+||+|+.+. ..
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCcccc
Confidence            5788999997642     2233446889999999999987433222 1223333331  112599999999998642 22


Q ss_pred             CHHHHHHHHH----HcC---CCEEEeccCCCCCHHHHHHHHHH
Q psy11135        126 DMNQAQELAE----QFN---IPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus       126 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ..+....+.+    ..+   ..+|++||+.|.|++.+++.|.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            2444444432    122   36999999999999999999877

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=1.3e-13  Score=111.55  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--C-----CCC------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--F-----VDE------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|++++|||||+++|+...  .     ...            ....+-+.....+.+.+  ..+.++||||+.++.
T Consensus        12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~f~   89 (693)
T PRK00007         12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVDFT   89 (693)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHHHH
Confidence            89999999999999999997422  1     000            11111112222333444  458889999998887


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ......+..+|++++|+|+...-.... ...+..+.    ..+.|.++++||+|+..
T Consensus        90 ~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~----~~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         90 IEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD----KYKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH----HcCCCEEEEEECCCCCC
Confidence            767777889999999999876432222 22222222    34679999999999853

>KOG1532|consensus

Probab=99.57  E-value=7.6e-15  Score=102.72  Aligned_cols=119  Identities=17%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             EEEEEEeCCChhh------HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHH--HhhcCCCCCcEEEEEecCCCCC
Q psy11135         51 ALLDILDTAGQEE------YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--KRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        51 ~~~~~~D~~g~~~------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +...++|||||-+      ...+....++.....+++|-++.+.+-.....+-+.+  .+.....+.|+|+|.||+|+.+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d  195 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD  195 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence            4578899999764      1223333344444444444444333332333332222  2333446799999999999977


Q ss_pred             CccCHH---HHHHH---HHH---------------------cCCCEEEeccCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        123 WAVDMN---QAQEL---AEQ---------------------FNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       123 ~~~~~~---~~~~~---~~~---------------------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      ..+..+   +.+.|   ..+                     .++..+-||+.+|.|.+++|.++...+.+....
T Consensus       196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence            333211   11111   110                     046688999999999999999999888654433

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.56  E-value=1.8e-13  Score=97.47  Aligned_cols=119  Identities=18%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRD   69 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~   69 (191)
                      .+++|+|+|.+|+|||||+|+|++....  ....+++..........++.  .+.+|||||..+...          ...
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            3689999999999999999999987632  23333433333333344444  478999999654410          112


Q ss_pred             hhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCC
Q psy11135         70 QYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLST  122 (191)
Q Consensus        70 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~  122 (191)
                      .++.  ..++++++..++....-..-...++.+..... .--.++++|.||+|...
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            2232  47888888766543211111233333332111 11247999999999865

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12740 elongation factor G; Reviewed

Probab=99.56  E-value=3e-13  Score=109.49  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             EcCCCCCHHHHHHHHHhCCCC--C--Ccc-C-Cccc-----------eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhh
Q psy11135          9 VGAGGVGKSALTIQLIQNHFV--D--EYD-P-TIED-----------SYRKQVVIDGETALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         9 ~G~~~~GKStli~~l~~~~~~--~--~~~-~-~~~~-----------~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      +|+.++|||||+++|....-.  .  ... . +..+           .......+....+.+.+|||||+.++.......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999643311  0  000 0 0000           001111222234568999999999888878888


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +..+|++++++|.++....... ..+..+.    ..+.|+++|+||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence            9999999999999886544333 2222222    23689999999999853

>KOG3905|consensus

Probab=99.56  E-value=2.2e-13  Score=97.69  Aligned_cols=162  Identities=14%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC----CEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG----EGFL   79 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----~~~i   79 (191)
                      -+|+|+|..|+||||||.+|-+.+.......-........-...+....+.+|-..|......++...+...    -.+|
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            468999999999999999998877322211111111111112223345577898889877777777665543    4578


Q ss_pred             EEEeCCChhh-HHHHHHHHHHHHhhcC-----------------------------------------------------
Q psy11135         80 LVFAVNSMKS-FEDIGSYREQIKRVKD-----------------------------------------------------  105 (191)
Q Consensus        80 ~v~d~~~~~s-~~~~~~~~~~~~~~~~-----------------------------------------------------  105 (191)
                      ++.+++++.. ++.+..|..-+...+.                                                     
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL  212 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL  212 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence            8999999965 4566777655543311                                                     


Q ss_pred             -------CCCCcEEEEEecCCCCC-----CccC-------HHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        106 -------AEEVPMVLVGNKCDLST-----WAVD-------MNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       106 -------~~~~p~ivv~nK~D~~~-----~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                             .-++|++||+||+|...     .++.       ...++.|+-.+|...+++|+++.-|++-++.+|.+...-
T Consensus       213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence                   11449999999999833     2222       223567888999999999999999999999999988754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.56  E-value=3.3e-13  Score=97.71  Aligned_cols=119  Identities=20%  Similarity=0.226  Sum_probs=69.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-------HHhhc
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-------RDQYM   72 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~   72 (191)
                      .+++|+++|.+|+||||++|+|++...  .+...+.+..........++  ..+.++||||..+....       ...++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            478999999999999999999998773  23333322222222223344  45899999996643221       11111


Q ss_pred             --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC
Q psy11135         73 --RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~  122 (191)
                        ...|++++|..++....-..-...++.+.... ..--.+.++|.|+.|..+
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence              25899999966543211111122222232211 111247899999999764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=1.4e-13  Score=103.12  Aligned_cols=155  Identities=25%  Similarity=0.303  Sum_probs=111.8

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCC-----------------ccCCcc-ceEEEEEE-EcCeEEEEEEEeCCChhhHHHH
Q psy11135          7 VVVGAGGVGKSALTIQLIQNHFVDE-----------------YDPTIE-DSYRKQVV-IDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~~~~~~-----------------~~~~~~-~~~~~~~~-~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      .++-+-..|||||..|+......-+                 .--|.. ......+. -++..|.+.++|||||-++.-.
T Consensus        13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE   92 (603)
T COG0481          13 SIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE   92 (603)
T ss_pred             EEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE
Confidence            4567788999999999975431110                 000111 11112222 2568899999999999998877


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---CEEEe
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---PFIKT  144 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~  144 (191)
                      ....+..|.+.++++|++..-.-..+...+..+..     +.-++-|+||+|+...+ .....+++.+-.|+   ..+.+
T Consensus        93 VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Ad-pervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          93 VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAAD-PERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCC-HHHHHHHHHHHhCCCcchheeE
Confidence            77778999999999999885444445555555544     67889999999998633 33445667777776   47899


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        145 SAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ||++|.|+++++++|++.++...
T Consensus       167 SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             ecccCCCHHHHHHHHHhhCCCCC
Confidence            99999999999999999987654

>PRK13768 GTPase; Provisional

Probab=99.53  E-value=1.2e-13  Score=99.00  Aligned_cols=112  Identities=19%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             EEEEEeCCChhhHH---HHHHhh---ccc--CCEEEEEEeCCChhhHHHHH--HHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         52 LLDILDTAGQEEYS---AMRDQY---MRT--GEGFLLVFAVNSMKSFEDIG--SYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        52 ~~~~~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      .+.+||+||+.+..   ..+..+   +..  .+++++++|...........  .++......  ..+.|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence            47899999987643   222222   222  78999999996644332222  122211111  1368999999999987


Q ss_pred             CCccCHHHHH---------------------------HHHHHcC--CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        122 TWAVDMNQAQ---------------------------ELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       122 ~~~~~~~~~~---------------------------~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ..........                           +..++.+  .+++++|++++.|+++++++|.+.+..
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            6321111111                           1122334  578999999999999999999887743

>smart00275 G_alpha G protein alpha subunit

Probab=99.53  E-value=4.8e-13  Score=99.67  Aligned_cols=118  Identities=15%  Similarity=0.133  Sum_probs=84.3

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      ..+.+||++|+...+..|..++.+++++++|+|+++-          ..+......+..+.......+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            4578999999999999999999999999999999873          245555555555555444567999999999997


Q ss_pred             CCC------------c----cCHHHHHHHHH-----Hc------CCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        121 STW------------A----VDMNQAQELAE-----QF------NIPFIKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       121 ~~~------------~----~~~~~~~~~~~-----~~------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                      ...            +    .+.+.+..+..     ..      .+..+.++|.+..++..+|+.+...+.....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            320            1    12233322211     11      1445678889999999999988888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.52  E-value=9.6e-13  Score=108.97  Aligned_cols=143  Identities=22%  Similarity=0.299  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcC----------------eEEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135         14 VGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDG----------------ETALLDILDTAGQEEYSAMRDQYMRTGE   76 (191)
Q Consensus        14 ~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~~   76 (191)
                      ++||||+.++.+...+....+....+... .++.+.                ....+.+|||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            45999999999888655444433332221 112221                0113789999999999888888888899


Q ss_pred             EEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-CH------------HH-HHHH------
Q psy11135         77 GFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-DM------------NQ-AQEL------  133 (191)
Q Consensus        77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~------------~~-~~~~------  133 (191)
                      ++++|+|+++   +.+.+.+.    .+..    .+.|+++|+||+|+..... ..            +. ..++      
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999987   33333332    2222    2579999999999864211 00            00 1111      


Q ss_pred             -----HH------------Hc--CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        134 -----AE------------QF--NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       134 -----~~------------~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                           +.            .+  .++++++||++|+|+++++..|.....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                 11            11  257999999999999999988765443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=8e-13  Score=97.66  Aligned_cols=151  Identities=17%  Similarity=0.152  Sum_probs=94.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------CccC----------Ccc------ceEEEEEEEcCeEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD------------EYDP----------TIE------DSYRKQVVIDGETAL   52 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~------------~~~~----------~~~------~~~~~~~~~~~~~~~   52 (191)
                      -++++|+|+..+|||||+-+|+-..  +..            ....          +..      +.......+....+.
T Consensus         7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~   86 (428)
T COG5256           7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN   86 (428)
T ss_pred             ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence            5789999999999999999986432  110            0000          000      111112334455567


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH-----HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccC
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF-----EDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVD  126 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~  126 (191)
                      +.++|+||+.++-.-.-.....+|+.++|+|..+.+--     ......-..+.+...  -..+||++||+|+.+ .+..
T Consensus        87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde~r  164 (428)
T COG5256          87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDEER  164 (428)
T ss_pred             EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCHHH
Confidence            99999999888887777778899999999999886411     111111111222222  246899999999987 1111


Q ss_pred             HH----HHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135        127 MN----QAQELAEQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       127 ~~----~~~~~~~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                      .+    +...+.+..|     ++|+++|+..|.|+.+.
T Consensus       165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            11    1233455555     46999999999987543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.49  E-value=7.5e-13  Score=97.56  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ  129 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  129 (191)
                      .+.+.++||+|.......   ....+|.++++.+....+.+....   ..+..      ..-++|+||+|+.........
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHH
Confidence            456889999996633322   455799999886543333332222   11222      223899999998763322222


Q ss_pred             HHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        130 AQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       130 ~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ..++...          +..+++.+|+.++.|++++++.|.+.+.
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2222222          3368999999999999999999998764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.49  E-value=1.6e-13  Score=101.80  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=79.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--C-C---CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH-----Hhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--V-D---EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR-----DQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~   71 (191)
                      .++|+|+|.+|+|||||||+|.+-..  . .   +...|+.+...+.   ....-.+.+||.||........     ...
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~---~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP---HPKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE----SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC---CCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            68999999999999999999975321  1 1   1112222222221   1222237789999965332222     223


Q ss_pred             cccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCC--------CCccCHHHH-HH---HHH---
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLS--------TWAVDMNQA-QE---LAE---  135 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~--------~~~~~~~~~-~~---~~~---  135 (191)
                      +..-|.+|++.+- .   +.... .....+..    .+.|+++|-||+|..        +.....++. ++   .+.   
T Consensus       112 ~~~yD~fiii~s~-r---f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  112 FYRYDFFIIISSE-R---FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             GGG-SEEEEEESS-S-----HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCC-C---CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            6668887776643 2   22222 22333333    378999999999961        122232221 12   111   


Q ss_pred             -HcC---CCEEEeccCC--CCCHHHHHHHHHHHHHhhhhh
Q psy11135        136 -QFN---IPFIKTSAKT--RMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       136 -~~~---~~~~~~s~~~--~~~v~~l~~~i~~~~~~~~~~  169 (191)
                       +.|   .++|.+|+.+  .++...+.+.|...+...+..
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence             123   3689999886  456888999998888776544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.49  E-value=1.6e-14  Score=102.24  Aligned_cols=111  Identities=21%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             EEEEEeCCChhhHHHHHHhhc--------ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         52 LLDILDTAGQEEYSAMRDQYM--------RTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .+.++|||||.+....+....        ...-++++++|.....+.... ..++..+.. ....+.|.+.|+||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence            477899999998665444332        345677888887654332222 222222211 1113689999999999976


Q ss_pred             Cc--cC------------------HHHHHHHHHH---cC-C-CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        123 WA--VD------------------MNQAQELAEQ---FN-I-PFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       123 ~~--~~------------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ..  ..                  .....+++.-   ++ . .++++|+.+++++++++..|.+.+
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            21  00                  0001112221   13 3 799999999999999999988765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.48  E-value=2.2e-12  Score=99.02  Aligned_cols=163  Identities=16%  Similarity=0.198  Sum_probs=109.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE--cCeEEEEEEEeCCChhhHHHHHHhhccc----C
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI--DGETALLDILDTAGQEEYSAMRDQYMRT----G   75 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~   75 (191)
                      +-.|+|+|..++|||||+.+|.+.+..   .++..-.| ......  .+....+.+|...|...+..+....+..    -
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e~~---~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIEDP---KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccCCC---CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            347999999999999999999765532   22222222 111111  1233467899998876777776665543    2


Q ss_pred             CEEEEEEeCCChhhH-HHHHHHHHHHHhhc-------------------------C------------------------
Q psy11135         76 EGFLLVFAVNSMKSF-EDIGSYREQIKRVK-------------------------D------------------------  105 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------------~------------------------  105 (191)
                      -.+++|.|++.|..+ +.+..|+..+....                         +                        
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            467899999998864 34555543332220                         0                        


Q ss_pred             ------------CCCCcEEEEEecCCCCC---Cc---------cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135        106 ------------AEEVPMVLVGNKCDLST---WA---------VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus       106 ------------~~~~p~ivv~nK~D~~~---~~---------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                                  .-++|++||++|+|...   ++         +..+.++.++-.+|+.++++|++...+++.++.+|.+
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                        01359999999999743   11         2223367788899999999999999999999999999


Q ss_pred             HHHhhhh
Q psy11135        162 EIKKDKM  168 (191)
Q Consensus       162 ~~~~~~~  168 (191)
                      .+.....
T Consensus       262 ~l~~~~f  268 (472)
T PF05783_consen  262 RLYGFPF  268 (472)
T ss_pred             HhccCCC
Confidence            8875443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.47  E-value=1.1e-12  Score=93.60  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIP  140 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~  140 (191)
                      ++..+.+.+++++|++++|||++++. ++..+..|+..+..    .++|+++|+||+|+.+.. +..+....+ ...+++
T Consensus        25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            56777778899999999999999877 89999998875543    478999999999997532 222334444 457899


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q psy11135        141 FIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus       141 ~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.47  E-value=3.9e-12  Score=95.50  Aligned_cols=83  Identities=25%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhH--
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEY--   64 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~--   64 (191)
                      .++|+++|.|++|||||+|+|.+.. ...+++.++.+.......+.+.               ...+.++|+||...-  
T Consensus        21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~  100 (390)
T PTZ00258         21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS  100 (390)
T ss_pred             CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence            4689999999999999999998766 4456666664444444444322               234889999995421  


Q ss_pred             --HH---HHHhhcccCCEEEEEEeCC
Q psy11135         65 --SA---MRDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus        65 --~~---~~~~~~~~~~~~i~v~d~~   85 (191)
                        ..   ..-..++.+|++++|+|..
T Consensus       101 ~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        101 EGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence              11   1223367799999999973

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.45  E-value=1.3e-11  Score=91.67  Aligned_cols=82  Identities=21%  Similarity=0.175  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeE---------------EEEEEEeCCChhhH---
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGET---------------ALLDILDTAGQEEY---   64 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~---   64 (191)
                      ++|+++|.|++|||||+|++++.. ...+++.++.+.......+.+..               ..+.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877 34556666544443334443321               24889999995421   


Q ss_pred             -HHH---HHhhcccCCEEEEEEeCC
Q psy11135         65 -SAM---RDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus        65 -~~~---~~~~~~~~~~~i~v~d~~   85 (191)
                       ..+   .-..++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             112   222367899999999984

>cd01882 BMS1 Bms1

Probab=99.45  E-value=2.9e-12  Score=90.44  Aligned_cols=137  Identities=17%  Similarity=0.173  Sum_probs=79.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ...|+++|.+|+|||||++.+.+...........+. ..  . .......+.++||||..  .... ...+.+|++++++
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi  111 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--V-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLI  111 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--E-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence            467899999999999999999875321111111111 11  1 11233447889999864  2222 3367899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEecCCCCCCccCHHH----HHH-HHHH--cCCCEEEeccCCCCC
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGNKCDLSTWAVDMNQ----AQE-LAEQ--FNIPFIKTSAKTRMG  151 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~----~~~-~~~~--~~~~~~~~s~~~~~~  151 (191)
                      |.+....... ...+..+..    .+.|. ++|+||+|+.+.....++    ++. +..+  .+.+++++|++++..
T Consensus       112 Da~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         112 DASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             ecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9976433221 222222322    34674 559999998642211111    111 2222  236899999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.45  E-value=1.1e-12  Score=106.67  Aligned_cols=114  Identities=22%  Similarity=0.236  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCccC-------Cccce-EEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-----------VDEYDP-------TIEDS-YRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      -+|+++|+.++|||||+++++...-           ..++.+       |.... ......+++..+.+.+|||||+.++
T Consensus        20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f   99 (720)
T TIGR00490        20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF   99 (720)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence            4899999999999999999975310           011111       11111 1112235666778999999999998


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .......+..+|++++|+|+...-..... ..+....    ..+.|.++++||+|...
T Consensus       100 ~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL----KENVKPVLFINKVDRLI  152 (720)
T ss_pred             HHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH----HcCCCEEEEEEChhccc
Confidence            88788889999999999999773222211 1222221    23578899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.42  E-value=8.4e-12  Score=93.05  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC----C-------------CCCCccC---CccceEE-----E-EEEEcCeEEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN----H-------------FVDEYDP---TIEDSYR-----K-QVVIDGETALLDIL   56 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~----~-------------~~~~~~~---~~~~~~~-----~-~~~~~~~~~~~~~~   56 (191)
                      ++-|.|+|+.++|||||++++.+.    .             .+.+..+   ++.+...     . ....++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            467899999999999999999876    2             2223333   2222211     1 11234555678999


Q ss_pred             eCCChhh--------HHH---------------------HHHhhcc-cCCEEEEEE-eCCC----hhhHHH-HHHHHHHH
Q psy11135         57 DTAGQEE--------YSA---------------------MRDQYMR-TGEGFLLVF-AVNS----MKSFED-IGSYREQI  100 (191)
Q Consensus        57 D~~g~~~--------~~~---------------------~~~~~~~-~~~~~i~v~-d~~~----~~s~~~-~~~~~~~~  100 (191)
                      ||+|-..        ...                     =+...+. .++..+++. |.+-    ++.+.. -..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999221        111                     0334455 788888887 6631    122222 23444455


Q ss_pred             HhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC--CCCCHHHHHHHHHHHH
Q psy11135        101 KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK--TRMGVDDAFYTLVREI  163 (191)
Q Consensus       101 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~v~~l~~~i~~~~  163 (191)
                      ..    .++|+++|+|+.|-.... ..+....+..+++++++.+|..  +..++..+++.++..+
T Consensus       177 k~----~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF  236 (492)
T TIGR02836       177 KE----LNKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF  236 (492)
T ss_pred             Hh----cCCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence            44    478999999999943222 4445567778889998877755  4556666666665544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.41  E-value=1.4e-11  Score=100.41  Aligned_cols=113  Identities=23%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCC---------ccC-------Cccc-eEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDE---------YDP-------TIED-SYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~---------~~~-------~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|+.++|||||+.+|+...-  ...         +.+       |... .....+..++..+.+.++||||+.++.
T Consensus        22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~  101 (731)
T PRK07560         22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG  101 (731)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence            699999999999999999985431  110         000       0000 001111234456678999999999988


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ......++.+|++++|+|+...-... ....+.....    .+.|.++++||+|...
T Consensus       102 ~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560        102 GDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence            88888899999999999987743222 2222222222    2467899999999763

>KOG1486|consensus

Probab=99.41  E-value=1.7e-11  Score=85.22  Aligned_cols=157  Identities=21%  Similarity=0.296  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH-------HhhcccC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR-------DQYMRTG   75 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~   75 (191)
                      -+|+++|.|++|||||+..+...+ -..+|..|+.+.......+++..  +++.|.||.-+-.+..       -...+.+
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeecc
Confidence            489999999999999999998776 56677778778777778888888  8889999966544322       2345679


Q ss_pred             CEEEEEEeCCChhhHHHH-HHHHHHHH-hhc-CCCC--------------------------------------------
Q psy11135         76 EGFLLVFAVNSMKSFEDI-GSYREQIK-RVK-DAEE--------------------------------------------  108 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~-~~~~~~~~-~~~-~~~~--------------------------------------------  108 (191)
                      |.++.+.|++..+.-..+ ...+..+- +.+ ..++                                            
T Consensus       141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R  220 (364)
T KOG1486|consen  141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR  220 (364)
T ss_pred             cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence            999999999887654422 22222221 111 0111                                            


Q ss_pred             ------------------CcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        109 ------------------VPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       109 ------------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                                        ++.+.|-||+|    .++.++...++++.+-  +.+|..-..|++.+++.|.+.+.-.+.
T Consensus       221 eD~t~DdfIDvi~gnr~Y~~ClYvYnKID----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~rv  292 (364)
T KOG1486|consen  221 EDCTVDDFIDVIEGNRVYIKCLYVYNKID----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLVRV  292 (364)
T ss_pred             cCCChHHHHHHHhccceEEEEEEEeeccc----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceEEE
Confidence                              15677778888    4577888888887765  445777888999999999998875443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.40  E-value=5.2e-13  Score=85.58  Aligned_cols=113  Identities=22%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+++|..|+|||+|+.++....+...+. ++..                          +......+.+..+.++.+|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999997666643322 2222                          2222345577889999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      +.++.+++..+  |...+.... ..+.|.++++||.|+.. ..+..++        +.+++++|++++.|+.
T Consensus        55 ~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       55 RVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             EccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence            99999988765  665554433 34688999999999743 2223222        2345677888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=5.6e-12  Score=87.18  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQ  129 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~  129 (191)
                      ....++++.|..-......   .-++.++.++|+.+.++...  ....++       ...-++++||+|+.+. ....+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence            3455677777322111111   12577899999988655221  111111       1123899999999752 223333


Q ss_pred             HHHHHHH--cCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        130 AQELAEQ--FNIPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       130 ~~~~~~~--~~~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ..+..+.  .+.+++++|+++|+|+++++++|.+.+
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444443  457999999999999999999988654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=6.1e-12  Score=94.27  Aligned_cols=158  Identities=16%  Similarity=0.233  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCCCc-----cC-------Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVDEY-----DP-------TIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~-----~~-------~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      +|+++-+...|||||+..|+...  +....     ..       .-+ +...+..-+....+.+.++|||||.++....+
T Consensus         7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE   86 (603)
T COG1217           7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE   86 (603)
T ss_pred             eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence            68999999999999999998654  22110     00       000 11122233444556799999999999999999


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHHH-------HHcCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQELA-------EQFNIP  140 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~-------~~~~~~  140 (191)
                      ..+.-.|++++++|+.+..... .+..++....    .+.+-|+|+||+|....+  .-.++.-++.       +++..|
T Consensus        87 Rvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          87 RVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            9999999999999998743221 2333333333    356779999999987622  1122222332       245678


Q ss_pred             EEEeccCCCC----------CHHHHHHHHHHHHHhhh
Q psy11135        141 FIKTSAKTRM----------GVDDAFYTLVREIKKDK  167 (191)
Q Consensus       141 ~~~~s~~~~~----------~v~~l~~~i~~~~~~~~  167 (191)
                      +++.|++.|.          ++..+|+.|++.++...
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            9999988664          68999999998887644

>KOG0082|consensus

Probab=99.38  E-value=2e-11  Score=89.71  Aligned_cols=124  Identities=17%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             EEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh----------HHHHHHHHHHHHhhcCCCCCcEEE
Q psy11135         44 VVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS----------FEDIGSYREQIKRVKDAEEVPMVL  113 (191)
Q Consensus        44 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~iv  113 (191)
                      +.+.+  ..+.++|++||...+.-|.+++.+++++++|.++++-+.          +.+...++..+.......+.++|+
T Consensus       190 F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  190 FTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            34444  448899999999999999999999999999999977321          122233444444444456799999


Q ss_pred             EEecCCCCC----------------CccCHHHHHHHH-----HHc-----CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        114 VGNKCDLST----------------WAVDMNQAQELA-----EQF-----NIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       114 v~nK~D~~~----------------~~~~~~~~~~~~-----~~~-----~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ++||.|+-.                ..-..+++..+.     +.+     .+.++.+.|.+..+|+.+|++....+..+.
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            999999832                011223332221     111     244666788999999999999988887755


Q ss_pred             hh
Q psy11135        168 ML  169 (191)
Q Consensus       168 ~~  169 (191)
                      ..
T Consensus       348 lk  349 (354)
T KOG0082|consen  348 LK  349 (354)
T ss_pred             HH
Confidence            43

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=4.6e-12  Score=90.80  Aligned_cols=163  Identities=21%  Similarity=0.215  Sum_probs=104.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccCC--------cc-ceEEEEEEEc------CeEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-------------EYDPT--------IE-DSYRKQVVID------GETALL   53 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~~--------~~-~~~~~~~~~~------~~~~~~   53 (191)
                      ++++|.++|+...|||||..+|.+.--..             .|..+        .. ..+.....+.      .-.-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            48999999999999999999996532100             00000        00 0111111111      112357


Q ss_pred             EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHH
Q psy11135         54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQA  130 (191)
Q Consensus        54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~  130 (191)
                      .|+|.|||+-.-++.-....-.|+.+++++++.+.--....+-+..+ ....  -..++++-||+|+..++.   ..++.
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            89999999987766666666789999999998843222222222222 1111  247899999999987433   23334


Q ss_pred             HHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        131 QELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       131 ~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ++|.+.   -+.|++++||.++.|++.++++|...+....
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            444442   2579999999999999999999999887543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.38  E-value=9.7e-12  Score=84.00  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEE---------------------------------------
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVV---------------------------------------   45 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~---------------------------------------   45 (191)
                      |+|+|..++|||||+|+|++.. .+....+++.........                                       
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            7899999999999999999987 343333333211111000                                       


Q ss_pred             ---------------EcCeEEEEEEEeCCChhh----HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy11135         46 ---------------IDGETALLDILDTAGQEE----YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA  106 (191)
Q Consensus        46 ---------------~~~~~~~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  106 (191)
                                     .......+.|+||||...    .......++..+|++++|.+.++..+-.....+......    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----  156 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----  156 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence                           000111478999999643    235677778999999999999986554444444444433    


Q ss_pred             CCCcEEEEEecC
Q psy11135        107 EEVPMVLVGNKC  118 (191)
Q Consensus       107 ~~~p~ivv~nK~  118 (191)
                      ....+++|.||+
T Consensus       157 ~~~~~i~V~nk~  168 (168)
T PF00350_consen  157 DKSRTIFVLNKA  168 (168)
T ss_dssp             TCSSEEEEEE-G
T ss_pred             CCCeEEEEEcCC
Confidence            234589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PTZ00416 elongation factor 2; Provisional

Probab=99.37  E-value=5.9e-12  Score=103.72  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCcc------------ceE---EEEEEEc--------CeEEEEEEEeCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIE------------DSY---RKQVVID--------GETALLDILDTA   59 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~------------~~~---~~~~~~~--------~~~~~~~~~D~~   59 (191)
                      +|+++|+.++|||||+++|+...-  .......+.            ...   .....++        +..+.+.++|||
T Consensus        21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP  100 (836)
T PTZ00416         21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP  100 (836)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence            899999999999999999986431  111110000            000   0111222        225568899999


Q ss_pred             ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      |+.++.......++.+|++++|+|+.+.-... ....+..+.    ..+.|.++++||+|+.
T Consensus       101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQAL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             CHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHH----HcCCCEEEEEEChhhh
Confidence            99999888888899999999999998743222 122333333    2368999999999986

>KOG3886|consensus

Probab=99.36  E-value=3.8e-12  Score=87.18  Aligned_cols=162  Identities=20%  Similarity=0.247  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-----HHHHhhcccCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-----AMRDQYMRTGE   76 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~   76 (191)
                      =||+++|..|+|||++=..++..-.+  ....+.+-+.......+-|. ..+.+||++|++.+-     ......+++.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            48999999999999985555533322  22222222333333333332 347899999998532     24446688999


Q ss_pred             EEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH-------HHHHHHHcCCCEEEecc
Q psy11135         77 GFLLVFAVNSMKSFEDI---GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-------AQELAEQFNIPFIKTSA  146 (191)
Q Consensus        77 ~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-------~~~~~~~~~~~~~~~s~  146 (191)
                      +++++||++..+--..+   .+.++.+..  ..+...+++.++|+|+.........       ...+.+.+++.++++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999887644444   444444544  3567889999999999873322222       22233344566777775


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        147 KTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      .+ +.+-..|..+...+.+....
T Consensus       162 wD-etl~KAWS~iv~~lipn~~~  183 (295)
T KOG3886|consen  162 WD-ETLYKAWSSIVYNLIPNVSA  183 (295)
T ss_pred             hh-HHHHHHHHHHHHhhCCChHH
Confidence            44 33344455555555444333

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.36  E-value=5.2e-12  Score=104.22  Aligned_cols=113  Identities=22%  Similarity=0.259  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCcc------------ceE---EEEEEE--------------cCeEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIE------------DSY---RKQVVI--------------DGETAL   52 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~------------~~~---~~~~~~--------------~~~~~~   52 (191)
                      -+|+++|+.++|||||+.+|+...-  .......+.            ...   .....+              .+..+.
T Consensus        20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (843)
T PLN00116         20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL   99 (843)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence            3799999999999999999985441  110000000            000   011111              223566


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      +.++||||+.++.......++.+|++++|+|+...-.... ...+...    ...++|.++++||+|..
T Consensus       100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~----~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHH----HHCCCCEEEEEECCccc
Confidence            8999999999998888888999999999999987432222 2222222    33478999999999987

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.36  E-value=3.3e-11  Score=87.40  Aligned_cols=135  Identities=19%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc---c-------CCcc-ceEEEEEEEcCeEEEEEEEeCCChh---------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY---D-------PTIE-DSYRKQVVIDGETALLDILDTAGQE---------   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~---~-------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~---------   62 (191)
                      .++|+|+|..|+|||||||.|++.......   .       .+.. ........-++..+.+.++||||..         
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999987743321   1       1111 1122233446777889999999911         


Q ss_pred             ---------hHHHHHHh---------hcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         63 ---------EYSAMRDQ---------YMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        63 ---------~~~~~~~~---------~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                               .+......         .-...|+++++++.+... +..+ ...++.+..     ..++|-|+.|+|..  
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~l--  155 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLSK-----RVNVIPVIAKADTL--  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHTT-----TSEEEEEESTGGGS--
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhcc-----cccEEeEEeccccc--
Confidence                     11111110         011268888888875421 1111 123333333     47899999999975  


Q ss_pred             ccCHHHHHHH-------HHHcCCCEEEeccC
Q psy11135        124 AVDMNQAQEL-------AEQFNIPFIKTSAK  147 (191)
Q Consensus       124 ~~~~~~~~~~-------~~~~~~~~~~~s~~  147 (191)
                        +.++...+       .+..++++|.....
T Consensus       156 --t~~el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  156 --TPEELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTT--S------
T ss_pred             --CHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence              44444333       34567777665433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01900 YchF YchF subfamily

Probab=99.35  E-value=3.2e-11  Score=86.87  Aligned_cols=79  Identities=22%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhH----H
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEY----S   65 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~----~   65 (191)
                      |+++|.|+||||||+|++++... ...++.++.+.......+.+.               ...+.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57899999999999999998774 455666654444444444432               135899999994421    1


Q ss_pred             HHHH---hhcccCCEEEEEEeC
Q psy11135         66 AMRD---QYMRTGEGFLLVFAV   84 (191)
Q Consensus        66 ~~~~---~~~~~~~~~i~v~d~   84 (191)
                      .+..   ..++.+|++++|+|.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            2222   235679999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0461|consensus

Probab=99.34  E-value=4.3e-11  Score=86.77  Aligned_cols=157  Identities=18%  Similarity=0.162  Sum_probs=93.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC----CCCCccCCccceEEEE-----EE-------EcCeEEEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH----FVDEYDPTIEDSYRKQ-----VV-------IDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      .+++.++|+..+|||||.+++..-.    +...-.++.. .....     ..       -.++..++.++|+||+...-.
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eR-giTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTER-GITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCccccc-ceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            6899999999999999999997433    2111111111 11111     11       134556789999999877655


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH----HHHHHHHc-----
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ----AQELAEQF-----  137 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~-----  137 (191)
                      ..-....-.|..++++|+...-......-++  +..   ..-...+||+||+|..+..-....    ...+.+.+     
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~---~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGE---LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhh--hhh---hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            5555555678889999997633222221111  111   112367899999998763221112    22222222     


Q ss_pred             --CCCEEEeccCCC----CCHHHHHHHHHHHHHh
Q psy11135        138 --NIPFIKTSAKTR----MGVDDAFYTLVREIKK  165 (191)
Q Consensus       138 --~~~~~~~s~~~~----~~v~~l~~~i~~~~~~  165 (191)
                        +.|++++|+.+|    +++.++.+.|.+.+.+
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence              379999999999    5666666666655543

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.33  E-value=6.7e-11  Score=93.02  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=71.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCC-ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HH---HHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AM---RDQ   70 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~   70 (191)
                      +++|+|+|.+|+||||++|+|++... ... ..+.+..........++..  +.++||||..+..       ..   ...
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHHH
Confidence            47899999999999999999998863 222 2233332223333345544  8899999965421       11   122


Q ss_pred             hcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135         71 YMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLST  122 (191)
Q Consensus        71 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  122 (191)
                      ++.  ..|++++|..++....-..-..+++.+...... --..+|||.|+.|..+
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            333  479999998876432211222344444332221 1236899999999886

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.31  E-value=4.4e-12  Score=89.01  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA  130 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  130 (191)
                      +.+.+++|.|.-...   -....-+|.++++....-.+....++.-+.++         +=++|+||+|....+....+.
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~~l  189 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVRDL  189 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHHHH
Confidence            456778887732221   23355689998888876655544444443333         338999999954322223332


Q ss_pred             HHHHH-------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        131 QELAE-------QFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       131 ~~~~~-------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      +....       .|..|++.+||.++.|++++++.|.+...
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            22222       12358999999999999999999887553

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.31  E-value=4.8e-11  Score=86.69  Aligned_cols=147  Identities=20%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC--------Cc--cCCccce-------------------EEEEE-EEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD--------EY--DPTIEDS-------------------YRKQV-VIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~--------~~--~~~~~~~-------------------~~~~~-~~~~~~   50 (191)
                      .+|.+.+|...=||||||-+|+...  +..        ..  ..+.++.                   ...-+ .+....
T Consensus         6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K   85 (431)
T COG2895           6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK   85 (431)
T ss_pred             ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence            5789999999999999999997543  110        00  0111111                   11000 122233


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc----
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAV----  125 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~----  125 (191)
                      -++.+-|||||+.|-.........+|+.++++|+..  -+.+-..--..+.....  -..+++.+||+|+.+ .+.    
T Consensus        86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHHHH
Confidence            357889999999998877788889999999999944  11111111111222222  247899999999987 111    


Q ss_pred             CHHHHHHHHHHcCC---CEEEeccCCCCCHH
Q psy11135        126 DMNQAQELAEQFNI---PFIKTSAKTRMGVD  153 (191)
Q Consensus       126 ~~~~~~~~~~~~~~---~~~~~s~~~~~~v~  153 (191)
                      ...+...|+.++++   .++++||..|+|+-
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            12234566777774   58999999999864

>KOG1707|consensus

Probab=99.30  E-value=1.1e-10  Score=89.62  Aligned_cols=157  Identities=21%  Similarity=0.323  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ++..|+|+.++|||.+++.+.++.+...+.+++...+. ......+....+.+-|.+-. ..+...... ..+|++.++|
T Consensus       426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~Y  503 (625)
T KOG1707|consen  426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVY  503 (625)
T ss_pred             eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEec
Confidence            67889999999999999999999876655555543332 23334455555677776643 333333332 7899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |.+++.++..+....+....   ..+.|.++|++|+|+.+  .+...+. .++++++++ +.+.+|....-. .++|..|
T Consensus       504 DsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL  578 (625)
T KOG1707|consen  504 DSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKL  578 (625)
T ss_pred             ccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence            99999999888776654433   25789999999999977  2244444 889999997 466667664333 7889888


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      ..+..-.+
T Consensus       579 ~~~A~~Ph  586 (625)
T KOG1707|consen  579 ATMAQYPH  586 (625)
T ss_pred             HHhhhCCC
Confidence            88776555

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.30  E-value=2.5e-11  Score=84.76  Aligned_cols=55  Identities=27%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCcEEEEEecCCCCCCc-cCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        108 EVPMVLVGNKCDLSTWA-VDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       108 ~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ..|.++++||+|+.... ...+...+..+..+  .+++++|++++.|++++++++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999997522 22334444444443  789999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.29  E-value=6.1e-11  Score=87.23  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH-
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN-  128 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-  128 (191)
                      .+.+.|+||+|.....   ......+|.++++-...   +-+.+......+.      +.|.++|+||+|+........ 
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHH
Confidence            4568899999854222   22455677777774332   2233333332222      467899999999875221100 


Q ss_pred             --H----HHHHHH---HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        129 --Q----AQELAE---QFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       129 --~----~~~~~~---~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                        .    ...+..   .+..+++++|++++.|+++++++|.+.+.
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence              0    011111   23357999999999999999999988644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1144|consensus

Probab=99.29  E-value=3.5e-11  Score=94.68  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=106.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEE-Ec----------------CeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-ID----------------GETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~D~~g~~~~~   65 (191)
                      +--++++|+..+|||-|+..+.+..+.....+........++. ..                -..-.+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4457899999999999999998877554444433332222111 00                112236789999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-----CccC---------HH---
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-----WAVD---------MN---  128 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~---------~~---  128 (191)
                      .++.....-||.+|+|+|+.+.-....+ .-++.+    ...+.|+||.+||+|-.=     +.-.         ..   
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqti-ESi~lL----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLL----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchh-HHHHHH----HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            9999999999999999999772111111 112222    235789999999999631     0000         00   


Q ss_pred             H--------HHHHHHH-c-----------C--CCEEEeccCCCCCHHHHHHHHHHHHHhhhhhh
Q psy11135        129 Q--------AQELAEQ-F-----------N--IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR  170 (191)
Q Consensus       129 ~--------~~~~~~~-~-----------~--~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~  170 (191)
                      +        ..+|+.+ +           +  +.++++||..|+||.+++.+|++..+.....+
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            0        1112111 0           1  34789999999999999999999887755443

>KOG0410|consensus

Probab=99.28  E-value=1.8e-11  Score=87.94  Aligned_cols=149  Identities=18%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh---------hhHHHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ---------EEYSAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~~   74 (191)
                      -|.|+|..++|||||+++|.+.. .+.+....+-+.........++.. +-+.||-|.         ..+.++... ...
T Consensus       180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~ATLee-Vae  257 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQATLEE-VAE  257 (410)
T ss_pred             eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHHHHHH-Hhh
Confidence            47899999999999999999655 333333333332222233333332 567999992         234444444 567


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc----EEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP----MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      +|.++.+.|+++|..-......+..+... .-+..|    ++=|=||+|..+.....+       .++  .+.+|+.+|+
T Consensus       258 adlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~--~v~isaltgd  327 (410)
T KOG0410|consen  258 ADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL--DVGISALTGD  327 (410)
T ss_pred             cceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc-------cCC--ccccccccCc
Confidence            99999999999988655555555555443 223333    455667777665332222       222  5788999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy11135        151 GVDDAFYTLVREIKK  165 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~  165 (191)
                      |++++.+++...+..
T Consensus       328 gl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  328 GLEELLKAEETKVAS  342 (410)
T ss_pred             cHHHHHHHHHHHhhh
Confidence            999999998877654

>KOG0705|consensus

Probab=99.26  E-value=4.2e-11  Score=91.36  Aligned_cols=160  Identities=24%  Similarity=0.464  Sum_probs=124.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++++|+.++|..++|||.|+.+++...+..... +.+..+...+..++....+.+.|.+|...     ..|-..+|++|+
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            468999999999999999999999888755543 34556677777888888899999888444     566778999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC---CccCHHHHHHH-HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST---WAVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      +|.+.+..++..+..+...+..+.....+|+++++++--...   +-+......++ ++...+.+|+..+..|.++...|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            999999999999988887777665567789999998743322   22333334444 44455899999999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      +.+.......
T Consensus       182 ~~~~~k~i~~  191 (749)
T KOG0705|consen  182 QEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHH
Confidence            9988877654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.4e-10  Score=86.56  Aligned_cols=110  Identities=18%  Similarity=0.266  Sum_probs=75.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh--CCCCC--------CccCCc----------c-ceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ--NHFVD--------EYDPTI----------E-DSYRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~--~~~~~--------~~~~~~----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      .+++-+|.+|||||-..|+-  +.+..        ....+.          + ........++.....+.+.|||||+++
T Consensus        15 FAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDF   94 (528)
T COG4108          15 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDF   94 (528)
T ss_pred             eeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcccc
Confidence            46789999999999998862  22110        000000          0 111223455666666899999999999


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      ..-+..-+..+|..+.|+|+..     .+......+..-+...++|++-++||.|-
T Consensus        95 SEDTYRtLtAvDsAvMVIDaAK-----GiE~qT~KLfeVcrlR~iPI~TFiNKlDR  145 (528)
T COG4108          95 SEDTYRTLTAVDSAVMVIDAAK-----GIEPQTLKLFEVCRLRDIPIFTFINKLDR  145 (528)
T ss_pred             chhHHHHHHhhheeeEEEeccc-----CccHHHHHHHHHHhhcCCceEEEeecccc
Confidence            8888888889999999999866     23333333445556678999999999996

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.9e-10  Score=85.89  Aligned_cols=154  Identities=17%  Similarity=0.081  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC---CCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF---VDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      -|+..|+-..|||||+.++.+..-   +.... +++-+--.+.....+.  .+.|+|.||++++-...-..+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            478899999999999999987662   22111 1222221222223333  58899999999988777777888999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc---CCCEEEeccCCCCCHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF---NIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~v~~l~~  157 (191)
                      +++.++.-....... +..+.. .  .....++|+||+|..+.....+..+++....   ..+++.+|+.+|.|++++.+
T Consensus        80 vV~~deGl~~qtgEh-L~iLdl-l--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTGEH-LLILDL-L--GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhHHH-HHHHHh-c--CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999965322221111 111211 1  1234699999999886432333333443333   35789999999999999999


Q ss_pred             HHHHHHH
Q psy11135        158 TLVREIK  164 (191)
Q Consensus       158 ~i~~~~~  164 (191)
                      .|.....
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9998875

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.21  E-value=3.3e-10  Score=80.92  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ  129 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  129 (191)
                      .+.+.|++|.|.-...   -....-+|.++++.-..-.+....++.-+-++..         ++|+||.|....+....+
T Consensus       143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHHH
Confidence            4567788888743322   2334458888888877666666666655544443         899999996553322222


Q ss_pred             HHH-H--H------HHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        130 AQE-L--A------EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       130 ~~~-~--~------~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ... +  .      +.|..+++.+|+.+|+|++++|++|.+....
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            211 1  1      1233589999999999999999998876643

>smart00053 DYNc Dynamin, GTPase

Probab=99.21  E-value=6.5e-10  Score=78.64  Aligned_cols=68  Identities=19%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             EEEEEEeCCChhh-------------HHHHHHhhccc-CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135         51 ALLDILDTAGQEE-------------YSAMRDQYMRT-GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN  116 (191)
Q Consensus        51 ~~~~~~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  116 (191)
                      ..+.++|+||...             ...+...++++ .+.++++.|+...-+-.....+.+.+.    ..+.|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence            4688999999642             22345566664 558888888755222112223333332    34689999999


Q ss_pred             cCCCCC
Q psy11135        117 KCDLST  122 (191)
Q Consensus       117 K~D~~~  122 (191)
                      |.|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999876

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01855 YqeH YqeH

Probab=99.21  E-value=1.3e-10  Score=80.04  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcC
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFN  138 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~  138 (191)
                      +...+..+++.+|++++|+|++++..     .|...+..  ...+.|+++|+||+|+.+.....+....+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            57788888999999999999987542     11122211  124679999999999976554444444443     3334


Q ss_pred             C---CEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        139 I---PFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       139 ~---~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      .   +++++|+++++|++++++.|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0458|consensus

Probab=99.20  E-value=1.5e-10  Score=89.00  Aligned_cols=150  Identities=17%  Similarity=0.223  Sum_probs=93.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-------------C---------ccCCcc------ceEEEEEEEcCeEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-------------E---------YDPTIE------DSYRKQVVIDGETAL   52 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~---------~~~~~~------~~~~~~~~~~~~~~~   52 (191)
                      -+..+++|+..+|||||+.+++..-  +..             .         -+.|..      +-.....+++.....
T Consensus       177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~  256 (603)
T KOG0458|consen  177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI  256 (603)
T ss_pred             ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence            3678999999999999999985321  000             0         000000      111223445666677


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFE---DIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAV  125 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~  125 (191)
                      +.+.|.||+..+..-.-.....+|+.++|+|++..+   .|+   ..++....++. ..  -..++|++||+|+.. .+.
T Consensus       257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lg--i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LG--ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cC--cceEEEEeecccccCccHH
Confidence            999999998888776667788899999999997632   222   11222222222 22  346899999999987 222


Q ss_pred             CHHH----HHHHH-HHcC-----CCEEEeccCCCCCHHHH
Q psy11135        126 DMNQ----AQELA-EQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       126 ~~~~----~~~~~-~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                      ..++    +..|. +..|     +.|+++|...|+|+-..
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            2222    23333 4555     46999999999987655

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.16  E-value=4.1e-11  Score=86.38  Aligned_cols=54  Identities=24%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             CcEEEEEecCCCCCC-ccCHHHHHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        109 VPMVLVGNKCDLSTW-AVDMNQAQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       109 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      .+-++|+||+|+.+. ....+...+..+..  ..+++++|+++++|++++.++|...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            466999999999752 22333343334433  4789999999999999999998764

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=7.7e-10  Score=88.82  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-----CccC--Cc---------c-ce--EEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVD-----EYDP--TI---------E-DS--YRKQVVIDGETALLDILDTAGQEEY   64 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~~--~~---------~-~~--~~~~~~~~~~~~~~~~~D~~g~~~~   64 (191)
                      =+|.++|+..+|||||..+++...-..     ....  +.         + +.  -.....+.+ .+.+.++|||||-++
T Consensus        11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVDF   89 (697)
T COG0480          11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVDF   89 (697)
T ss_pred             eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcccc
Confidence            378999999999999999997543111     1100  00         0 00  011222333 466899999999999


Q ss_pred             HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .......++-.|++++|+|+...-....- ..|++...    .+.|.++++||+|....
T Consensus        90 t~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          90 TIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             HHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence            99999999999999999999874332222 22333333    37899999999998763

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.12  E-value=1.4e-10  Score=77.89  Aligned_cols=54  Identities=30%  Similarity=0.326  Sum_probs=43.0

Q ss_pred             cEEEEEecCCCCC-CccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        110 PMVLVGNKCDLST-WAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       110 p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      .=++|+||.|+.+ -..+.+...+.+++.+  .+++++|.++|.|++++++++....
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4489999999987 3445566666666655  7999999999999999999987653

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.11  E-value=8.3e-09  Score=75.75  Aligned_cols=135  Identities=26%  Similarity=0.379  Sum_probs=77.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----c-----CCcc-ceEEEEEEEcCeEEEEEEEeCCChhh--------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-----D-----PTIE-DSYRKQVVIDGETALLDILDTAGQEE--------   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----~-----~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~--------   63 (191)
                      .+.|+++|+.|.|||||+|.|++.......     .     ++.. ......+.-++....+.++||||--+        
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w  102 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW  102 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence            689999999999999999999988643321     1     1111 11222333467778899999999111        


Q ss_pred             ------HHHHHHhh------------c--ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         64 ------YSAMRDQY------------M--RTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        64 ------~~~~~~~~------------~--~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                            ..+....+            +  ..+|+++|+...+.. .+..+. ..++.+.     ..+-+|=|+.|+|...
T Consensus       103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCC
Confidence                  01111111            1  126777777765442 122221 2222232     2467899999999754


Q ss_pred             C---ccCHHHHHHHHHHcCCCEEE
Q psy11135        123 W---AVDMNQAQELAEQFNIPFIK  143 (191)
Q Consensus       123 ~---~~~~~~~~~~~~~~~~~~~~  143 (191)
                      .   ....+...+....+++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence            1   11223344445667888884

>KOG2486|consensus

Probab=99.10  E-value=9.3e-11  Score=82.62  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-CccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~   71 (191)
                      ..++++.|..++|||+|++.+...+....... ..+.+......--+..  +.++|.||          ..++......|
T Consensus       136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCcccccCCccCcchHhHhHHHH
Confidence            35789999999999999999998874332222 3333322222222333  67799999          33566777777


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHH---HHHH----H---HHHcCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMN---QAQE----L---AEQFNI  139 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---~~~~----~---~~~~~~  139 (191)
                      +.+-+-.+-+|.+.+...  .+.........++...+.|+.+|.||+|....-.  ...   .+..    +   ......
T Consensus       214 ~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~  291 (320)
T KOG2486|consen  214 LLERENLVRVFLLVDASV--PIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDL  291 (320)
T ss_pred             HHhhhhhheeeeeeeccC--CCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccC
Confidence            666544433333333221  1222223334455556899999999999865211  111   1111    1   111124


Q ss_pred             CEEEeccCCCCCHHHHHHHHHH
Q psy11135        140 PFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus       140 ~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++.+|+.++.|+++++-.|.+
T Consensus       292 Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  292 PWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             CceeeecccccCceeeeeehhh
Confidence            6778999999999988776654

>cd01859 MJ1464 MJ1464

Probab=99.10  E-value=5.7e-10  Score=74.48  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEE
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK  143 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  143 (191)
                      |..+.++..+++|++++++|+.++..... ..+...    ....+.|+++|+||+|+.+... .+....+....+.++++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~----~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERY----VLELGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHH----HHhCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEE
Confidence            45677888889999999999987543221 111111    1223679999999999864211 11122344456678999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q psy11135        144 TSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      +|++++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999988775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.3e-08  Score=75.09  Aligned_cols=83  Identities=20%  Similarity=0.241  Sum_probs=54.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEE----------------cCeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVI----------------DGETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~g~~~~~   65 (191)
                      .+++.++|.|+||||||+|+++.... ..+|+.+|-+.-.....+                .-....+.++|.+|.-.-.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            57899999999999999999998773 356665443221111111                1123468999999844322


Q ss_pred             ----HHHH---hhcccCCEEEEEEeCC
Q psy11135         66 ----AMRD---QYMRTGEGFLLVFAVN   85 (191)
Q Consensus        66 ----~~~~---~~~~~~~~~i~v~d~~   85 (191)
                          .+..   .-++.+|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                2222   2267799999998864

>KOG0463|consensus

Probab=99.08  E-value=5.4e-10  Score=82.17  Aligned_cols=159  Identities=18%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CccCCccc--------------------eEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD------------------EYDPTIED--------------------SYRKQV   44 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~------------------~~~~~~~~--------------------~~~~~~   44 (191)
                      +++|+|+|...+|||||+-.|...+..+                  ...++.+.                    ......
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            7899999999999999998775433211                  11111110                    011111


Q ss_pred             EEcCeEEEEEEEeCCChhhHHHHHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         45 VIDGETALLDILDTAGQEEYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        45 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .+.+....+.|+|.+|+++|-..+-.....  .|..++++-.+.     .+.-+.++.+.....-..|+++|+||+|+-+
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa-----GIiGmTKEHLgLALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA-----GIIGMTKEHLGLALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc-----cceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence            223344457899999999987765544333  455555555433     2222223333333344689999999999988


Q ss_pred             CccCHHHHHHHHHHc-----------------------------CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        123 WAVDMNQAQELAEQF-----------------------------NIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       123 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ..+..+..+.+.+.+                             -||+|.+|..+|+|++-+ ..+++.+..++
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~  360 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRR  360 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCccc
Confidence            666666555443322                             267899999999997644 44444444433

>KOG1547|consensus

Probab=99.07  E-value=7e-09  Score=71.92  Aligned_cols=154  Identities=22%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccC--------CccceEEE-EEEEcCeEEEEEEEeCCChh----------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDP--------TIEDSYRK-QVVIDGETALLDILDTAGQE----------   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~~~~~~D~~g~~----------   62 (191)
                      +|+|+|+|..|.|||||+|.++..+... ...+        |+...... .+.-++...++.++||||--          
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            7999999999999999999998766322 1111        11111111 12235666788999999911          


Q ss_pred             ----------------hHHHHHHhhccc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         63 ----------------EYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        63 ----------------~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                                      +....++..+..  ++++++.+..+. .++..++ +.++.+..     -.-++-|+-|+|....
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence                            111122223332  566666665544 2233332 33333333     3467788889997541


Q ss_pred             c---cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        124 A---VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       124 ~---~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      +   -..+..++-...+++.+++-.+.+-..=+..++.-++.
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~  241 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRE  241 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHh
Confidence            1   12233344455678888887766655444555544433

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4.6e-09  Score=74.89  Aligned_cols=139  Identities=19%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC------CCCCcc-----CCc------cceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH------FVDEYD-----PTI------EDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~------~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      -++|..+|+...|||||..++...-      ....|.     |..      -......+...+..  +..+|+||+.+|-
T Consensus        12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDYv   89 (394)
T COG0050          12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADYV   89 (394)
T ss_pred             eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHHH
Confidence            4799999999999999998885311      111111     100      01112233344555  6789999999987


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCCc----cCHHHHHHHHHHcCC-
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTWA----VDMNQAQELAEQFNI-  139 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~-  139 (191)
                      ...-....+.|+.|+|+++++......-...+  +.+   .-+. .+++++||+|+.+..    .-..+.+++..++++ 
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--lar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL--LAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            76666678899999999998844322222221  111   1245 478889999998622    122345666777764 


Q ss_pred             ----CEEEeccCC
Q psy11135        140 ----PFIKTSAKT  148 (191)
Q Consensus       140 ----~~~~~s~~~  148 (191)
                          |++.-|+..
T Consensus       165 gd~~Pii~gSal~  177 (394)
T COG0050         165 GDDTPIIRGSALK  177 (394)
T ss_pred             CCCcceeechhhh
Confidence                566666653

>KOG1954|consensus

Probab=99.04  E-value=6e-09  Score=76.54  Aligned_cols=113  Identities=17%  Similarity=0.285  Sum_probs=76.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccC--CccceEEEEEEE------cCeE---------------------------
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVI------DGET---------------------------   50 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~------~~~~---------------------------   50 (191)
                      |+++|+-+.||||||+.|+..+++....+  ++.+.+....+-      ++..                           
T Consensus        61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq  140 (532)
T KOG1954|consen   61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ  140 (532)
T ss_pred             EEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhc
Confidence            78999999999999999999887643332  222232222211      1100                           


Q ss_pred             ------EEEEEEeCCChh-----------hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11135         51 ------ALLDILDTAGQE-----------EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVL  113 (191)
Q Consensus        51 ------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv  113 (191)
                            =.+.++||||.-           .+......+...+|.++++||..-.+--++....+..+..    ..-.+-|
T Consensus       141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRV  216 (532)
T KOG1954|consen  141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRV  216 (532)
T ss_pred             CChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEE
Confidence                  057899999933           3556778888999999999998665544455555555544    2446789


Q ss_pred             EEecCCCCC
Q psy11135        114 VGNKCDLST  122 (191)
Q Consensus       114 v~nK~D~~~  122 (191)
                      |+||+|..+
T Consensus       217 VLNKADqVd  225 (532)
T KOG1954|consen  217 VLNKADQVD  225 (532)
T ss_pred             EeccccccC
Confidence            999999654

>KOG2655|consensus

Probab=99.03  E-value=1.3e-08  Score=75.18  Aligned_cols=142  Identities=19%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------ccCCcc--ceEEEEEEEcCeEEEEEEEeCCChhh---------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--------YDPTIE--DSYRKQVVIDGETALLDILDTAGQEE---------   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~---------   63 (191)
                      +|.++++|..|.|||||+|.|+...+..+        ....+.  ......+.-++....+.++||||--+         
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            58999999999999999999998754332        111111  11222233356778899999999111         


Q ss_pred             -----HHHHHHh-----------hcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         64 -----YSAMRDQ-----------YMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        64 -----~~~~~~~-----------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                           .++....           -+.  .+|+++|.+..+..    .+..+.-.+.. .......+|-|+-|+|......
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh----gL~p~Di~~Mk-~l~~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH----GLKPLDIEFMK-KLSKKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC----CCcHhhHHHHH-HHhccccccceeeccccCCHHH
Confidence                 0111111           122  36777877765442    12222212211 1123578899999999764211


Q ss_pred             ---CHHHHHHHHHHcCCCEEEeccCCC
Q psy11135        126 ---DMNQAQELAEQFNIPFIKTSAKTR  149 (191)
Q Consensus       126 ---~~~~~~~~~~~~~~~~~~~s~~~~  149 (191)
                         ......+....+++++|.......
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence               222233444556777776654433

>KOG1143|consensus

Probab=99.03  E-value=5.3e-10  Score=82.08  Aligned_cols=155  Identities=21%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC------------------Ccc------ceEEEEEE----------EcC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP------------------TIE------DSYRKQVV----------IDG   48 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~------------------~~~------~~~~~~~~----------~~~   48 (191)
                      +++++|+|...+|||||+-.|.+++..+..-.                  ...      +.......          .+.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            78999999999999999999887664322110                  000      00000000          112


Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                      ....+.++|.+|+.+|....-+.+..  .|..+++++++..-.|..- +-+-.+.    .-++|++++++|+|+..+.-.
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~----AL~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIA----ALNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHH----HhCCCeEEEEEeeccccchhH
Confidence            23357899999999998876665554  5777888888764443321 2222222    347899999999999764222


Q ss_pred             HHHHHHHH---HHc--------------------------CCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        127 MNQAQELA---EQF--------------------------NIPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       127 ~~~~~~~~---~~~--------------------------~~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ....+++.   .+.                          -.|+|-+|+..|++++-+ ..+++.+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll-~~fLn~L  386 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL-RTFLNCL  386 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH-HHHHhhc
Confidence            22222221   111                          247888999999997644 3444444

>KOG0468|consensus

Probab=99.03  E-value=1.7e-09  Score=84.59  Aligned_cols=113  Identities=27%  Similarity=0.300  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccC---------Cccc------eE------EEEEEEcCeEEEEEEEeCCChh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---------TIED------SY------RKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~---------~~~~------~~------~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      .+++++|+-++|||+|+.-|.....+.-...         +...      ..      .......++.+.++++|||||.
T Consensus       129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV  208 (971)
T KOG0468|consen  129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV  208 (971)
T ss_pred             EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence            5789999999999999999976553222111         0000      00      0011235677889999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      .+.......++.+|++++++|+.+.-.+..     .++.+.......|+++|+||+|..
T Consensus       209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  209 NFSDETTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             cchHHHHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhccCcEEEEEehhHHH
Confidence            998888888999999999999977544332     223333334578999999999963

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.00  E-value=1.4e-09  Score=71.34  Aligned_cols=54  Identities=20%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      +++++|.+|+|||||+|++.+............+.......+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            68999999999999999999877432221111122223334444   3689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0085|consensus

Probab=99.00  E-value=6.8e-10  Score=76.51  Aligned_cols=122  Identities=17%  Similarity=0.142  Sum_probs=84.7

Q ss_pred             EcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11135         46 IDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVG  115 (191)
Q Consensus        46 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~  115 (191)
                      ++-..+.+.++|.+|+...+..|-+++.+.-.++++..++.          ....++...++..+..+....+.++|+.+
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            34455668899999999988888888888777776655432          33455566777778877777889999999


Q ss_pred             ecCCCCCCc-----------------cCHHHHHHHHHHc----C------CCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        116 NKCDLSTWA-----------------VDMNQAQELAEQF----N------IPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       116 nK~D~~~~~-----------------~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ||.|+....                 -+.+.+++|.-+.    +      +.-.++.|.+.+|+..+|.+....+....
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            999985522                 2223333332221    2      12345677889999999999887776543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.98  E-value=4e-09  Score=77.15  Aligned_cols=88  Identities=19%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             HhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135         69 DQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK  147 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~  147 (191)
                      ...++++|.+++|+|+.++. ++..+..|+..+..    .++|.++|+||+|+.+.. ............+.+++++|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE-EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-HHHHHHHHHHhCCCeEEEEECC
Confidence            44588999999999999987 77778787765544    368999999999996531 1122233445678899999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy11135        148 TRMGVDDAFYTLVR  161 (191)
Q Consensus       148 ~~~~v~~l~~~i~~  161 (191)
                      ++.|+++++..|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.97  E-value=8.6e-09  Score=77.73  Aligned_cols=95  Identities=22%  Similarity=0.387  Sum_probs=71.5

Q ss_pred             hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHH
Q psy11135         61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQ  136 (191)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~  136 (191)
                      .+++..+...+...++++++|+|+.+..     ..|...+..+.  .+.|+++|+||+|+.+.....+...    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997744     23334444332  2579999999999987555545444    34666


Q ss_pred             cCC---CEEEeccCCCCCHHHHHHHHHHH
Q psy11135        137 FNI---PFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       137 ~~~---~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      .++   .++++||++++|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            776   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.96  E-value=1.8e-09  Score=79.60  Aligned_cols=157  Identities=21%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------cC-----CccceEEEEEEEc--------------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY----------DP-----TIEDSYRKQVVID--------------------   47 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~-----~~~~~~~~~~~~~--------------------   47 (191)
                      .+.+.++|+...|||||+-.|.........          ..     -+.+.....+-++                    
T Consensus       117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv  196 (527)
T COG5258         117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV  196 (527)
T ss_pred             eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence            578999999999999998887543321100          00     0000000011111                    


Q ss_pred             -CeEEEEEEEeCCChhhHHHHHH--hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         48 -GETALLDILDTAGQEEYSAMRD--QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        48 -~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                       ...-.+.++||.|++.|-.+.-  .+-...|-.+++..+++.-+     .+-++........+.|+++++||+|+.+.+
T Consensus       197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-----~~tkEHLgi~~a~~lPviVvvTK~D~~~dd  271 (527)
T COG5258         197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-----KMTKEHLGIALAMELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-----hhhhHhhhhhhhhcCCEEEEEEecccCcHH
Confidence             1112478999999999876433  34556899999999988432     333343444444578999999999997632


Q ss_pred             cCHH---HHHHHHH----------------------HcC---CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        125 VDMN---QAQELAE----------------------QFN---IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       125 ~~~~---~~~~~~~----------------------~~~---~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ....   +...+.+                      +.+   +|+|.+|+.+|+|++-+.+ +...+++
T Consensus       272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~  339 (527)
T COG5258         272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPK  339 (527)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCc
Confidence            2211   1111111                      112   5789999999999765444 4444444

>PRK00098 GTPase RsgA; Reviewed

Probab=98.96  E-value=3.8e-09  Score=77.69  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             hcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR  149 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  149 (191)
                      ..+++|.+++|+|+.+++.... +..|+..+..    .++|+++|+||+|+.......+......+..+++++++|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3689999999999988765433 4556554433    4689999999999963222222344555667889999999999


Q ss_pred             CCHHHHHHHHH
Q psy11135        150 MGVDDAFYTLV  160 (191)
Q Consensus       150 ~~v~~l~~~i~  160 (191)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998764

>cd01858 NGP_1 NGP-1

Probab=98.95  E-value=3.2e-09  Score=70.95  Aligned_cols=54  Identities=15%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      .++|+++|.+|+|||||+|++.+....  ...++++..  ...+.. +..  +.++||||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~-~~~--~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITL-MKR--IYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEc-CCC--EEEEECcCC
Confidence            567899999999999999999987632  222222221  111122 222  678999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.94  E-value=9.9e-09  Score=76.71  Aligned_cols=86  Identities=19%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCCCEEEeccCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNIPFIKTSAKTR  149 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~  149 (191)
                      .+++|.+++|++.+...++..+..|+....    ..++|.++|+||+|+.+...  ............+++++++|++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            577999999999988888988888876443    24689999999999975321  112223344567889999999999


Q ss_pred             CCHHHHHHHHHH
Q psy11135        150 MGVDDAFYTLVR  161 (191)
Q Consensus       150 ~~v~~l~~~i~~  161 (191)
                      .|++++++.|..
T Consensus       194 ~GideL~~~L~~  205 (347)
T PRK12288        194 EGLEELEAALTG  205 (347)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998864

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.94  E-value=6.7e-09  Score=79.29  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK----------SFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      ...+.++|++|+...+.-|..++.+++++++|.++++-+          .+.+....+..+.......+.|++++.||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            344789999999999999999999999999999986522          2334445555555444445899999999999


Q ss_pred             CCC-------------Cc------cCHHHHHHHHHH------------cCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        120 LST-------------WA------VDMNQAQELAEQ------------FNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       120 ~~~-------------~~------~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      +..             ++      -..+.+..+...            ..+.++.++|.+..++..+|+.+.+.
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            722             11      122333333221            11235567788888888888877654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12289 GTPase RsgA; Reviewed

Probab=98.93  E-value=9.7e-09  Score=76.80  Aligned_cols=90  Identities=20%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             HHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      +....++++|.+++|+|+.++. ....+..|+....    ..++|+++|+||+|+..... .+........+|++++++|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEE
Confidence            3445588999999999998765 4445556655442    34789999999999964211 1222333456788999999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVR  161 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~  161 (191)
                      +.++.|++++++.+..
T Consensus       157 A~tg~GI~eL~~~L~~  172 (352)
T PRK12289        157 VETGIGLEALLEQLRN  172 (352)
T ss_pred             cCCCCCHHHHhhhhcc
Confidence            9999999999988754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.92  E-value=4.1e-09  Score=71.22  Aligned_cols=55  Identities=25%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      .++++++|.+|+|||||+|++.+.........+..+........+ .  .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~--~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-K--KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-C--CEEEEECcC
Confidence            378999999999999999999987742211111111111122232 2  378899999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3887|consensus

Probab=98.92  E-value=1.5e-08  Score=70.39  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH---HHHhhcccCCEEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA---MRDQYMRTGEGFLLV   81 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v   81 (191)
                      +|+++|..-+||||+-...+..-.+.+..--..+.....-.+.+.-+.+++||.|||..+-.   --...++.+.+++++
T Consensus        29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv  108 (347)
T KOG3887|consen   29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV  108 (347)
T ss_pred             eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence            59999999999999866655444332211000011011112334556789999999875432   244568899999999


Q ss_pred             EeCCChhhHHHHHHHHHHH-HhhcCCCCCcEEEEEecCCCCCCccCHHHH--------HHHHHH----cCCCEEEeccCC
Q psy11135         82 FAVNSMKSFEDIGSYREQI-KRVKDAEEVPMVLVGNKCDLSTWAVDMNQA--------QELAEQ----FNIPFIKTSAKT  148 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--------~~~~~~----~~~~~~~~s~~~  148 (191)
                      +|+.+.- .+.+..+...+ +.+...+++.+=|.+.|.|-...+...+..        .++++.    ..+.|+.+|. -
T Consensus       109 IDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI-y  186 (347)
T KOG3887|consen  109 IDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI-Y  186 (347)
T ss_pred             EechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee-c
Confidence            9997632 22222222222 234456788899999999976533222211        122221    1234666664 4


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhh
Q psy11135        149 RMGVDDAFYTLVREIKKDKMLRG  171 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~~~~~~~  171 (191)
                      ...+-+.|..+++.+.+...-.+
T Consensus       187 DHSIfEAFSkvVQkLipqLptLE  209 (347)
T KOG3887|consen  187 DHSIFEAFSKVVQKLIPQLPTLE  209 (347)
T ss_pred             chHHHHHHHHHHHHHhhhchhHH
Confidence            56677888888887766554433

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.91  E-value=5.2e-09  Score=69.75  Aligned_cols=86  Identities=17%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      |++++|+|+.++.+..  ..++..  ......+.|+++|+||+|+.+.....+....+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~--~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTR--SPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCcccc--CHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            6889999998865433  122221  122234689999999999864211111122333344567899999999999999


Q ss_pred             HHHHHHHHHh
Q psy11135        156 FYTLVREIKK  165 (191)
Q Consensus       156 ~~~i~~~~~~  165 (191)
                      .+.|.+.+.+
T Consensus        77 ~~~i~~~~~~   86 (155)
T cd01849          77 ESAFTKQTNS   86 (155)
T ss_pred             HHHHHHHhHH
Confidence            9999877653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.90  E-value=2.3e-07  Score=60.67  Aligned_cols=147  Identities=14%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCC-C---------------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTA-G---------------------   60 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g---------------------   60 (191)
                      .+||.+.|+||+||||++.++...--...+  ..+..+.....-+++..-+.+.|+. |                     
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            589999999999999999988643321111  2223334444455566666666666 2                     


Q ss_pred             ---hh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         61 ---QE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        61 ---~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                         .+ .........++.+|++  ++|---+-.+. ...+...+.. ....+.|++.++.+.+-      ....+.+.+.
T Consensus        83 v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~-vl~~~kpliatlHrrsr------~P~v~~ik~~  152 (179)
T COG1618          83 VEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEE-VLKSGKPLIATLHRRSR------HPLVQRIKKL  152 (179)
T ss_pred             HHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHH-HhcCCCcEEEEEecccC------ChHHHHhhhc
Confidence               11 1111223334445554  44432221111 1122222222 22346788888887652      2344445444


Q ss_pred             cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        137 FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .++.++    .+..|=+.+++.|++.|..
T Consensus       153 ~~v~v~----lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         153 GGVYVF----LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             CCEEEE----EccchhhHHHHHHHHHhcc
Confidence            444443    3444444888888877643

>KOG1487|consensus

Probab=98.88  E-value=6.3e-09  Score=72.94  Aligned_cols=83  Identities=25%  Similarity=0.231  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-------HHHhhcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-------MRDQYMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~   76 (191)
                      ++-++|.|++||||++..+.+.. ....+..++-.+......+++..  +++.|.||.-+-..       ..-...+.+.
T Consensus        61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            78899999999999999998776 44555555554444444444444  89999999654322       1223456688


Q ss_pred             EEEEEEeCCChhh
Q psy11135         77 GFLLVFAVNSMKS   89 (191)
Q Consensus        77 ~~i~v~d~~~~~s   89 (191)
                      .+++|.|+..|-+
T Consensus       139 li~~vld~~kp~~  151 (358)
T KOG1487|consen  139 LIFIVLDVLKPLS  151 (358)
T ss_pred             EEEEEeeccCccc
Confidence            8999999876544

>cd01858 NGP_1 NGP-1

Probab=98.87  E-value=7e-09  Score=69.28  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR  149 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  149 (191)
                      ..+..+|++++|.|+.++..- ....+.+.+..  ...+.|+++|+||+|+.+..........+.+.+....+++|++++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK--EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccc-cCHHHHHHHHh--ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence            347789999999999886321 11222222222  123579999999999965321112222333333333578999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy11135        150 MGVDDAFYTLVREIK  164 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~  164 (191)
                      .|++++.+.+...+.
T Consensus        81 ~~~~~L~~~l~~~~~   95 (157)
T cd01858          81 FGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            999999999876543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.80  E-value=3.4e-08  Score=72.01  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             CCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         58 TAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        58 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                      .|||.. ........++.+|++++|+|+.++.+...  ..+....     .+.|+++|+||+|+.+.... +...+..+.
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHHHHHHHH
Confidence            467653 33455666889999999999977544221  1111111     25799999999998642211 111122233


Q ss_pred             cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        137 FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      .+.+++.+|+.++.|++++.+.+.+.+.+..
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            5668899999999999999999988876543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0099|consensus

Probab=98.80  E-value=8.3e-08  Score=67.53  Aligned_cols=120  Identities=15%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-------SFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDL  120 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~  120 (191)
                      +.++.+|.+|+.+.+..|-.++....++|++...+.-.       +-..+++-+..+.+..   ....+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            34889999999999999999999999999998865411       2223333333332211   1235789999999998


Q ss_pred             CCCcc-----------------------------CH----------HHHHHHHHHc-----CCCEEEeccCCCCCHHHHH
Q psy11135        121 STWAV-----------------------------DM----------NQAQELAEQF-----NIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       121 ~~~~~-----------------------------~~----------~~~~~~~~~~-----~~~~~~~s~~~~~~v~~l~  156 (191)
                      ..+.+                             +.          ++........     -|.+.++.|.+.+++..+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            32100                             00          0000111111     1456778889999999999


Q ss_pred             HHHHHHHHhhhhhh
Q psy11135        157 YTLVREIKKDKMLR  170 (191)
Q Consensus       157 ~~i~~~~~~~~~~~  170 (191)
                      +.-...++..+..+
T Consensus       362 nDcrdiIqr~hlrq  375 (379)
T KOG0099|consen  362 NDCRDIIQRMHLRQ  375 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888777766543

>cd01856 YlqF YlqF

Probab=98.78  E-value=2.1e-08  Score=67.90  Aligned_cols=56  Identities=25%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      .++++++|.+|+|||||++++.+............+.......++   ..+.++||||.
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            368999999999999999999987753222111111112222333   23689999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0466|consensus

Probab=98.78  E-value=1.4e-08  Score=72.91  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  127 (191)
                      .+.++|+||++..-++.-....-.|+.++++..+.+    .+-+.+...  ++..     -..++++-||+|+..+....
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQNKiDli~e~~A~  198 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQNKIDLIKESQAL  198 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEechhhhhhHHHHH
Confidence            478899999987766555556667888888877652    222222221  1112     24789999999998744444


Q ss_pred             HHHHHHHH---H---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        128 NQAQELAE---Q---FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       128 ~~~~~~~~---~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ++-+++.+   .   .+.|++++||.-.+|++-+.++|.+.++.
T Consensus       199 eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  199 EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            44333332   2   25799999999999999999999998864

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.78  E-value=2.4e-08  Score=72.74  Aligned_cols=54  Identities=24%  Similarity=0.357  Sum_probs=36.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      .++++++|.+|+|||||+|++.+....  ...++++...  .....+.   .+.++||||.
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            578999999999999999999977632  2222222222  2222322   2689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.76  E-value=3.8e-08  Score=72.10  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=36.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      .++++++|.+|+|||||+|++.+.....  ..++++..  ......+ ..  +.++||||..
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~-~~--~~l~DtPGi~  177 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLG-KG--LELLDTPGIL  177 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeC-Cc--EEEEECCCcC
Confidence            4789999999999999999999877422  22222222  1122222 23  6799999954

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.76  E-value=1e-08  Score=67.91  Aligned_cols=56  Identities=25%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDE-------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      -++++|++|||||||+|+|.+......       ..+...++....+..++..   .++||||..+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~   99 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS   99 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence            468999999999999999998752111       1111112223334444443   5799999554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.75  E-value=2.1e-07  Score=79.91  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCc------cCCccceEEEEEEEcCeEEEEEEEeCCChh------------hHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEY------DPTIEDSYRKQVVIDGETALLDILDTAGQE------------EYSAM   67 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------------~~~~~   67 (191)
                      .+|+|++|+||||+++.- +-.++-..      ....+.......++.+..   .++||+|..            .+...
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCE---EEEcCCCccccCCCcccccHHHHHHH
Confidence            478999999999999987 33332211      111122233444555555   379999921            13333


Q ss_pred             HHhh-----cccCCEEEEEEeCCChh-----h----HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         68 RDQY-----MRTGEGFLLVFAVNSMK-----S----FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        68 ~~~~-----~~~~~~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ....     -+..+++|+++|+.+.-     .    -..++..+.++... .....|++||+||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence            3322     13489999999986521     1    12333444444432 234799999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.73  E-value=5.5e-08  Score=64.84  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      ..+++++|.+|+|||||+|++.+...  ....++++......  ..+ .  .+.++||||
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~-~--~~~liDtPG  154 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD-N--KIKLLDTPG  154 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec-C--CEEEEECCC
Confidence            46799999999999999999998763  22333333333222  222 2  378899999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.72  E-value=3.6e-08  Score=73.18  Aligned_cols=55  Identities=27%  Similarity=0.347  Sum_probs=37.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      .++++|+|.|++|||||||+|.+.....  ..+++|.....  +..+..   +.++||||.-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~--i~~~~~---i~LlDtPGii  188 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW--IKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE--EEcCCC---eEEecCCCcC
Confidence            4789999999999999999999988532  33322222222  223332   6789999943

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=5.5e-07  Score=70.00  Aligned_cols=135  Identities=19%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++|-++|+|++|+||||||+.+..+--.......    ......+.++.-.+.+.++|.  +..++. ...+-+|.++++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence            4678899999999999999999865422111111    111223556667789999983  333332 335668999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCHHHHHH-HHHH------cCCCEEEeccCC
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDMNQAQE-LAEQ------FNIPFIKTSAKT  148 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~-~~~~------~~~~~~~~s~~~  148 (191)
                      +|..-.-..+.. ++++.+..    .+.| ++-|+|+.|+-........++. +...      .|+.+|..|...
T Consensus       141 IdgnfGfEMETm-EFLnil~~----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         141 IDGNFGFEMETM-EFLNILIS----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eccccCceehHH-HHHHHHhh----cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            998764433333 23333333    3555 7789999999774433333221 2111      156788877653

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=7e-08  Score=64.38  Aligned_cols=55  Identities=33%  Similarity=0.323  Sum_probs=35.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      ..+++++|.+|+||||+++++.+..... ..++.+.........-+.  .+.+|||||
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~--~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS--KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC--CEEEEECcC
Confidence            4688999999999999999999765321 122222222222211222  378999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.69  E-value=3.8e-08  Score=67.82  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..++++|.+|+|||||+|+|.+..
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhc
Confidence            579999999999999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0448|consensus

Probab=98.69  E-value=9.2e-07  Score=69.87  Aligned_cols=115  Identities=17%  Similarity=0.282  Sum_probs=69.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEE---------------------------------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRK---------------------------------------   42 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~---------------------------------------   42 (191)
                      ..||++.|..++||||++|+++... .+.+..+++.-+...                                       
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~  188 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA  188 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence            4699999999999999999998665 333322222111000                                       


Q ss_pred             ----EEEEcCeE-----EEEEEEeCCChh---hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11135         43 ----QVVIDGET-----ALLDILDTAGQE---EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP  110 (191)
Q Consensus        43 ----~~~~~~~~-----~~~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  110 (191)
                          .+.+++..     -.+.++|.||.+   +..+-...+...+|++++|..+.+-.+..+... +....    ..+..
T Consensus       189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F-f~~vs----~~Kpn  263 (749)
T KOG0448|consen  189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF-FHKVS----EEKPN  263 (749)
T ss_pred             ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH-HHHhh----ccCCc
Confidence                11122211     147789999955   333444555678999999998877544333322 22222    22455


Q ss_pred             EEEEEecCCCCC
Q psy11135        111 MVLVGNKCDLST  122 (191)
Q Consensus       111 ~ivv~nK~D~~~  122 (191)
                      ++|+.||+|...
T Consensus       264 iFIlnnkwDasa  275 (749)
T KOG0448|consen  264 IFILNNKWDASA  275 (749)
T ss_pred             EEEEechhhhhc
Confidence            777788889865

>TIGR00092 GTP-binding protein YchF

Probab=98.68  E-value=1.5e-07  Score=70.42  Aligned_cols=82  Identities=17%  Similarity=-0.010  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhHH-
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEYS-   65 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~-   65 (191)
                      +++.++|.|++|||||++++++...  ...|+.++.........+++.               ...+.+.|.||...-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765  345555544333333444332               2357899999965422 


Q ss_pred             ------HHHHhhcccCCEEEEEEeCC
Q psy11135         66 ------AMRDQYMRTGEGFLLVFAVN   85 (191)
Q Consensus        66 ------~~~~~~~~~~~~~i~v~d~~   85 (191)
                            ...-..++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                  12333478899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01856 YlqF YlqF

Probab=98.68  E-value=1e-07  Score=64.65  Aligned_cols=100  Identities=15%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             CCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         58 TAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        58 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                      .||+. +........++++|.+++++|+.++..-... .    +....  .+.|.++|+||+|+.+... .....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~--~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL--GNKPRIIVLNKADLADPKK-TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh--cCCCEEEEEehhhcCChHH-HHHHHHHHHh
Confidence            45654 3334456668899999999999875432111 1    11211  2469999999999864211 1112123333


Q ss_pred             cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        137 FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .+..++.+|++++.|++++.+.+...+..
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45578999999999999999999887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.68  E-value=1.6e-07  Score=68.88  Aligned_cols=102  Identities=20%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             eCCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH
Q psy11135         57 DTAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE  135 (191)
Q Consensus        57 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  135 (191)
                      -.|||.. -.......+..+|++++|+|+.++.+...  .++....   .  +.|.++|+||+|+.+... .+...++..
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~--~kp~iiVlNK~DL~~~~~-~~~~~~~~~   77 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G--NKPRLLILNKSDLADPEV-TKKWIEYFE   77 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C--CCCEEEEEEchhcCCHHH-HHHHHHHHH
Confidence            3577663 23345566889999999999977544221  1122221   1  579999999999864211 112222233


Q ss_pred             HcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        136 QFNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       136 ~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ..+.+++.+|+.++.|++++.+.+...+.+.
T Consensus        78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         78 EQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            4467889999999999999999988887654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.64  E-value=1.7e-06  Score=65.21  Aligned_cols=156  Identities=16%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-----------------CCCCccC----Cccce----EEEEEEE-cCeEEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-----------------FVDEYDP----TIEDS----YRKQVVI-DGETALLDIL   56 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-----------------~~~~~~~----~~~~~----~~~~~~~-~~~~~~~~~~   56 (191)
                      ++-|.|+|+.-+||||||+++...-                 .+.+..+    |+...    ......+ ++-.++++++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            5678999999999999999995322                 2111111    11111    1122233 5677889999


Q ss_pred             eCCChh--------h-----------------HHH----HHHhhccc--CCEEEEEEeCCC----hhhHHHHH-HHHHHH
Q psy11135         57 DTAGQE--------E-----------------YSA----MRDQYMRT--GEGFLLVFAVNS----MKSFEDIG-SYREQI  100 (191)
Q Consensus        57 D~~g~~--------~-----------------~~~----~~~~~~~~--~~~~i~v~d~~~----~~s~~~~~-~~~~~~  100 (191)
                      |+.|-.        +                 +..    =++..+..  .-++++.-|.+-    ++++.... ....++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            999800        0                 000    01122222  223344444322    23333332 333334


Q ss_pred             HhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC--CCCCHHHHHHHHHHHH
Q psy11135        101 KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK--TRMGVDDAFYTLVREI  163 (191)
Q Consensus       101 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~v~~l~~~i~~~~  163 (191)
                      ..    -++|+++++|-.+-.. ....+.+.++..+|++++++++..  +..++..++..++..+
T Consensus       177 k~----igKPFvillNs~~P~s-~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  177 KE----IGKPFVILLNSTKPYS-EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HH----hCCCEEEEEeCCCCCC-HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            33    3789999999877332 345566788889999999988755  4455666666655544

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.62  E-value=4.5e-08  Score=73.25  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC-CCccCC------ccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFV-DEYDPT------IEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      ++|+|.+|||||||||+|.+.... ....+.      ..+.....+.+++..   .++||||..+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~  269 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVRE  269 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCc
Confidence            689999999999999999977632 111111      111122223343333   4799999655

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.60  E-value=5e-07  Score=66.93  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             eEEEEEEEeCCChhhH--------HHHHHh----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135         49 ETALLDILDTAGQEEY--------SAMRDQ----YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN  116 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~--------~~~~~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  116 (191)
                      ..+.+.++||||....        ......    .....+..++|.|++...  +.+.. ...+...    -.+.-+|+|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEEEE
Confidence            3456889999995421        111111    123467778888887532  22222 2222221    135589999


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135        117 KCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       117 K~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      |.|...   ..-.+...+...+.|+.+++  .|++++++-.
T Consensus       268 KlD~t~---~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        268 KLDGTA---KGGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCC---CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            999654   23344556677799999988  7777776644

>PRK13796 GTPase YqeH; Provisional

Probab=98.60  E-value=9.6e-07  Score=66.85  Aligned_cols=94  Identities=20%  Similarity=0.345  Sum_probs=63.7

Q ss_pred             hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHHc
Q psy11135         62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQF  137 (191)
Q Consensus        62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~  137 (191)
                      +++...........+.+++++|+.+..     ..|...+..+.  .+.|+++|+||+|+.+.....+...    .+++..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            345555555444445889999997743     12333333322  2579999999999976544444433    335566


Q ss_pred             CC---CEEEeccCCCCCHHHHHHHHHHH
Q psy11135        138 NI---PFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       138 ~~---~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      |+   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998664

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.58  E-value=2.2e-06  Score=60.61  Aligned_cols=83  Identities=22%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCC--CCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHH------HHHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN--HFV--DEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYS------AMRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~------~~~~~~~   72 (191)
                      .-|.++|++++|||+|+|.+.+.  .+.  ....+++.........+. +....+.++||+|.....      ......+
T Consensus         8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l   87 (224)
T cd01851           8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL   87 (224)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence            35789999999999999999988  442  222333332222222221 223458899999965321      2222333


Q ss_pred             cc--CCEEEEEEeCCC
Q psy11135         73 RT--GEGFLLVFAVNS   86 (191)
Q Consensus        73 ~~--~~~~i~v~d~~~   86 (191)
                      ..  ++.+++..+...
T Consensus        88 ~~llss~~i~n~~~~~  103 (224)
T cd01851          88 ATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHhCEEEEeccCcc
Confidence            33  777777666654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK14974 cell division protein FtsY; Provisional

Probab=98.54  E-value=2.6e-07  Score=68.75  Aligned_cols=95  Identities=15%  Similarity=0.070  Sum_probs=55.9

Q ss_pred             EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||+|....+.    .....  ....+.+++|.|++....   .......+....    .+--+|+||.|...  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~----~~~giIlTKlD~~~--  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV----GIDGVILTKVDADA--  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC----CCCEEEEeeecCCC--
Confidence            4578999999653211    11121  224678888988866331   122222222211    24588999999865  


Q ss_pred             cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135        125 VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                       ..-.+-.++...+.|+.+++  .|++++++..
T Consensus       294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence             22233445556688988887  6888877654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.8e-07  Score=70.15  Aligned_cols=23  Identities=48%  Similarity=0.638  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++|+|++|||||||||+|.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            37899999999999999999765

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.51  E-value=2.1e-07  Score=70.29  Aligned_cols=125  Identities=15%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH-------
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD-------   69 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------   69 (191)
                      -+++++|.+|||||||+|++.+...       .+..+.++....  ....++.   +.++||||.........       
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~~~~~~~~l~~~~l  229 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIINSHQMAHYLDKKDL  229 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCChhHhhhhcCHHHH
Confidence            3799999999999999999997542       223333332221  2223222   46899999654322111       


Q ss_pred             -hhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC
Q psy11135         70 -QYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN  138 (191)
Q Consensus        70 -~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  138 (191)
                       ...  +......+..+....-.+..+..     ..+.......+.+.+++.+.....-.......+.+..|
T Consensus       230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g  296 (360)
T TIGR03597       230 KYITPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLG  296 (360)
T ss_pred             hhcCCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence             111  12344444444433222222211     01122235567788888776653222222333344444

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.50  E-value=7e-07  Score=58.52  Aligned_cols=76  Identities=18%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             hhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK  147 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~  147 (191)
                      ..+..+|++++++|+.++.+..  .+..++.   ..  ..+.|+++|+||+|+.+.. ......+.....+.+++++|+.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~--~~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVK---EV--DPRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hc--cCCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEEEec
Confidence            4478899999999998865432  2233322   21  1468999999999986422 1223344555667889999998


Q ss_pred             CCCC
Q psy11135        148 TRMG  151 (191)
Q Consensus       148 ~~~~  151 (191)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            7753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.49  E-value=3.5e-06  Score=64.52  Aligned_cols=86  Identities=14%  Similarity=0.034  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++||||....+.    ....+  ....+.+++|.|++-...   .......+...    -.+--+|+||.|... 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~----~~~~g~IlTKlD~~a-  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS----VDVGSVIITKLDGHA-  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc----cCCcEEEEECccCCC-
Confidence            45788999999553322    11111  224677889998865322   12222333321    236789999999754 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEec
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                        ..-.+-......+.|+.+++
T Consensus       254 --rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 --KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             --CccHHhhhHHHHCCCeEEEc
Confidence              12223445555666665544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.49  E-value=2.4e-06  Score=57.10  Aligned_cols=64  Identities=14%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCChhhHHHHHHhh--------cccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQY--------MRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      .....++|++|..+........        ....+.++++.|..+.... .....+..++..       .=++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence            3456789999977655444321        2347888999997653321 111222222322       23779999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.48  E-value=1.3e-06  Score=63.38  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCChhhHHHHH--------Hh----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135         50 TALLDILDTAGQEEYSAMR--------DQ----YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK  117 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~--------~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  117 (191)
                      .+.+.++||||....+...        ..    .....+.+++|.|++...  +.+. ....+.+..    .+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEEEEc
Confidence            3568899999965332211        11    112378899999997532  2222 223333211    256899999


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135        118 CDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       118 ~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      .|...   ..-.+..+....+.|+.+++  .|++++++..
T Consensus       227 lDe~~---~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       227 LDGTA---KGGIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             cCCCC---CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            99865   23344555667788988888  6777766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.47  E-value=3.8e-07  Score=65.27  Aligned_cols=23  Identities=39%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|.+|||||||+|++.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            57899999999999999999765

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1534|consensus

Probab=98.47  E-value=6.2e-07  Score=61.24  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             EEEEeCCChhhH-------HHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         53 LDILDTAGQEEY-------SAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        53 ~~~~D~~g~~~~-------~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +-++|+|||-+.       ..+.++.-..---+..||-+..+-   +...+.-.+..+.... .-..|-|-|++|+|+..
T Consensus       100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi-~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen  100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI-SLEVPHINVLSKMDLLK  178 (273)
T ss_pred             EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH-HhcCcchhhhhHHHHhh
Confidence            567999997652       223333322222233444443322   2222222333333322 23689999999999865


Q ss_pred             CccCHHHHHH-------------------------------HHHHcC-CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        123 WAVDMNQAQE-------------------------------LAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       123 ~~~~~~~~~~-------------------------------~~~~~~-~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      . ...++.+.                               +...++ +.|++....+.+.++.++..|...++=
T Consensus       179 ~-~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy  252 (273)
T KOG1534|consen  179 D-KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY  252 (273)
T ss_pred             h-hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            2 11111111                               112223 468888888888899988888877753

>KOG1491|consensus

Probab=98.45  E-value=6.1e-07  Score=65.45  Aligned_cols=82  Identities=21%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc---------------CeEEEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID---------------GETALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~D~~g~~~~~~   66 (191)
                      .++|.++|.|++|||||+|+|..... +..++.++-+.....+.+.               .....++++|++|.-.-.+
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            57999999999999999999998774 4445444333222222221               2345689999998443221


Q ss_pred             ----HHH---hhcccCCEEEEEEeC
Q psy11135         67 ----MRD---QYMRTGEGFLLVFAV   84 (191)
Q Consensus        67 ----~~~---~~~~~~~~~i~v~d~   84 (191)
                          +..   ..++.+|+++.|+++
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~  124 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRA  124 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEe
Confidence                222   226778999888775

>KOG0447|consensus

Probab=98.45  E-value=4.6e-05  Score=59.45  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=54.2

Q ss_pred             EEEEEeCCCh-------------hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         52 LLDILDTAGQ-------------EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        52 ~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      ...++|.||.             +....+...+..+.+++|+|+-=..   .+.-+.....+...+...+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            5778999992             2344577888999999999885333   22233444445555666788899999999


Q ss_pred             CCCCCcc-CHHHHHHHHH
Q psy11135        119 DLSTWAV-DMNQAQELAE  135 (191)
Q Consensus       119 D~~~~~~-~~~~~~~~~~  135 (191)
                      |+....+ ++..++.+..
T Consensus       490 DlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             chhhhccCCHHHHHHHHh
Confidence            9987544 3444444443

>KOG0460|consensus

Probab=98.43  E-value=7e-06  Score=60.17  Aligned_cols=139  Identities=20%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC---C-C--CCCcc-----CCc---c---ceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN---H-F--VDEYD-----PTI---E---DSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~---~-~--~~~~~-----~~~---~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      -++|.-+|+...|||||-.++...   . .  ...|.     |..   +   ......+.....+  +.-.|+||+.+|-
T Consensus        54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~Rh--YaH~DCPGHADYI  131 (449)
T KOG0460|consen   54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRH--YAHTDCPGHADYI  131 (449)
T ss_pred             cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccc--cccCCCCchHHHH
Confidence            478889999999999998887531   1 0  01111     100   0   1111222223333  5678999999988


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc----cCHHHHHHHHHHcC---
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA----VDMNQAQELAEQFN---  138 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~---  138 (191)
                      ...-......|+.|+|+..+|......-..++  +.+...  -..+++.+||.|+.+..    .-.-+.+++...+|   
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            77677788899999999999954322222221  112111  24689999999998522    12234556666665   


Q ss_pred             --CCEEEeccC
Q psy11135        139 --IPFIKTSAK  147 (191)
Q Consensus       139 --~~~~~~s~~  147 (191)
                        +|++.-||+
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence              578776655

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.40  E-value=2e-07  Score=67.44  Aligned_cols=55  Identities=25%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC-----C--CccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFV-----D--EYDPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      .+++|++|||||||+|+|.+....     +  ...+...++....+.+++..   .++||||..+
T Consensus       167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~  228 (301)
T COG1162         167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS  228 (301)
T ss_pred             EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence            578999999999999999864311     1  11222223334445565444   3689999655

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.36  E-value=4.2e-07  Score=66.60  Aligned_cols=24  Identities=42%  Similarity=0.573  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -.++++|++|+|||||+|.|.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0467|consensus

Probab=98.35  E-value=1.2e-06  Score=70.07  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCC-ccCCc-----------c-ceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDE-YDPTI-----------E-DSY-RKQVVIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~-~~~~~-----------~-~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      +|+++-+...|||||+..|....- .+. -.++.           . .+. ...+..-.+.+.+.++|+|||.++.+...
T Consensus        11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs   90 (887)
T KOG0467|consen   11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS   90 (887)
T ss_pred             EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence            678999999999999999976542 111 11110           0 000 00111223556789999999999999988


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      ....-+|+.++++|+...-     ......+.+.+...+...++|+||+|-
T Consensus        91 sas~l~d~alvlvdvvegv-----~~qt~~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   91 SASRLSDGALVLVDVVEGV-----CSQTYAVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhcCCcEEEEeecccc-----chhHHHHHHHHHHccCceEEEEehhhh
Confidence            8888899999999996622     111122222122335678999999993

>PRK13796 GTPase YqeH; Provisional

Probab=98.34  E-value=8.6e-07  Score=67.10  Aligned_cols=54  Identities=28%  Similarity=0.356  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      -+++++|.+|||||||+|+|.+...       .+..++|+....  .+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence            3689999999999999999986431       223333433322  2233333   3589999964

>PRK01889 GTPase RsgA; Reviewed

Probab=98.32  E-value=4.3e-06  Score=63.15  Aligned_cols=83  Identities=19%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  150 (191)
                      .+++|.+++|+++..+-....+..++.....    .+++.++|+||+|+.+.  ..+....+.. ..+++++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCcEEEEECCCCc
Confidence            6789999999999754444445555444433    36778999999999753  1112222222 457899999999999


Q ss_pred             CHHHHHHHHH
Q psy11135        151 GVDDAFYTLV  160 (191)
Q Consensus       151 ~v~~l~~~i~  160 (191)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888874

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.29  E-value=3.7e-05  Score=60.34  Aligned_cols=91  Identities=20%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             EEEEEEEeCCChhhHHHH----HHhhc-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         50 TALLDILDTAGQEEYSAM----RDQYM-RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~----~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      .+.+.|+||+|....+..    ..... ......++|++.+.  +...+...+..+..     ..+.-+|+||.|...  
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~--  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG--  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc--
Confidence            356889999995432211    11110 11234556666654  23333343333332     246789999999854  


Q ss_pred             cCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        125 VDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                       ..-.+.......+.++.+++  +|..+
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence             33556666777788877766  34444

>PRK00098 GTPase RsgA; Reviewed

Probab=98.28  E-value=1.1e-06  Score=64.71  Aligned_cols=24  Identities=38%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -.++++|++|+|||||+|+|.+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            357899999999999999998765

>KOG3859|consensus

Probab=98.26  E-value=1.2e-05  Score=57.41  Aligned_cols=58  Identities=26%  Similarity=0.358  Sum_probs=41.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-----EEEEEEcCeEEEEEEEeCCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-----RKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~~g   60 (191)
                      .|+|+.+|..|.|||||+..|++..+.....++.....     .+...-.+....+.++||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            58999999999999999999998886443333322221     22223356677889999999

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.8e-05  Score=67.20  Aligned_cols=111  Identities=20%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             EEEcCCCCCHHHHHHHHHhCC-CCC--Cc--cCCccceEEEEEEEcCeEEEEEEEeCCC----hh----hHHHHHHh---
Q psy11135          7 VVVGAGGVGKSALTIQLIQNH-FVD--EY--DPTIEDSYRKQVVIDGETALLDILDTAG----QE----EYSAMRDQ---   70 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~---   70 (191)
                      +|+|++|+||||++..--..- +..  ..  ....+ +......+.+..   .++||+|    ++    .-...|..   
T Consensus       129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             EEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcccccce---EEEcCCcceecccCcchhhHHHHHHHHH
Confidence            689999999999976542211 111  11  11111 122333344444   4689888    21    11112221   


Q ss_pred             ------hcccCCEEEEEEeCCChh-----h----HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         71 ------YMRTGEGFLLVFAVNSMK-----S----FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        71 ------~~~~~~~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                            -.+..+++++..++.+.-     .    ...++.-+.++.... .-..|+++++||.|+.+
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEecccccc
Confidence                  144589999999985511     1    122333344444432 24689999999999986

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.21  E-value=7.3e-05  Score=55.54  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=58.0

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcc--------cCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMR--------TGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      +...++++.|..........+..        ..|+++-++|..+-.. ...+......-..+      .=++|+||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence            45668999997776554444333        2577888999877433 22122333222232      238999999998


Q ss_pred             CCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHH
Q psy11135        122 TWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       122 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~  157 (191)
                      ... ..+..+...++++  ++++.++. ......+++.
T Consensus       159 ~~~-~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         159 DAE-ELEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CHH-HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            744 2444555556655  56777765 4444444444

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.20  E-value=2.7e-05  Score=58.86  Aligned_cols=135  Identities=15%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC---CCCc--cCCccce--------------EEEEEE-E-----------cCeEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF---VDEY--DPTIEDS--------------YRKQVV-I-----------DGETALL   53 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~---~~~~--~~~~~~~--------------~~~~~~-~-----------~~~~~~~   53 (191)
                      .++++|++|+||||++..|.....   ....  .-+....              ...... .           .-....+
T Consensus       139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl  218 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM  218 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence            578999999999999999864321   0000  0000000              000000 0           0123357


Q ss_pred             EEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCC----CcEEEEEecCCCCC
Q psy11135         54 DILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNS-MKSFEDIGSYREQIKRVKDAEE----VPMVLVGNKCDLST  122 (191)
Q Consensus        54 ~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~----~p~ivv~nK~D~~~  122 (191)
                      .++||+|....+.    .....  .....-.++|.+.+. .+....+   +..+......+.    .+-=+|.||.|...
T Consensus       219 VLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        219 VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             EEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            8899999553222    22221  122344567777766 3333333   323322111110    13467889999865


Q ss_pred             CccCHHHHHHHHHHcCCCEEEec
Q psy11135        123 WAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                         ..-.+..+....+.|+.+++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               34455566667777766655

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.20  E-value=0.0001  Score=50.31  Aligned_cols=86  Identities=22%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN  128 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  128 (191)
                      ..+.+.++|+|+....  .....+..+|.++++...+.. +...+..+++.+...    +.|+.+|+|+.|....  ..+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~--~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF----GIPVGVVINKYDLNDE--IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc--hHH
Confidence            4567899999975432  233456789999999888743 455555655555442    4678999999997542  345


Q ss_pred             HHHHHHHHcCCCEEE
Q psy11135        129 QAQELAEQFNIPFIK  143 (191)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (191)
                      +.+++.++++++++-
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            667778888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.19  E-value=3.5e-05  Score=58.17  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc----ceEEE---------------EEE--E----------cCeEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE----DSYRK---------------QVV--I----------DGETALL   53 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~----~~~~~---------------~~~--~----------~~~~~~~   53 (191)
                      .|+++|+.||||||-+..|...-..........    +.+..               .+.  .          .-..+.+
T Consensus       205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~  284 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV  284 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence            478999999999999888764433111111000    00000               000  0          1123358


Q ss_pred             EEEeCCChhhHHH----HHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135         54 DILDTAGQEEYSA----MRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        54 ~~~D~~g~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  127 (191)
                      .++||.|...++.    ....++..  ..-+.++++++...  ..+...+..+...     ..-=+++||.|...   +.
T Consensus       285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~-----~i~~~I~TKlDET~---s~  354 (407)
T COG1419         285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF-----PIDGLIFTKLDETT---SL  354 (407)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC-----CcceeEEEcccccC---ch
Confidence            8999999654433    22333322  23345666666532  3444544444432     12357889999865   44


Q ss_pred             HHHHHHHHHcCCCEEEec--cCCCCCHHHHH-HHHHHHHHhh
Q psy11135        128 NQAQELAEQFNIPFIKTS--AKTRMGVDDAF-YTLVREIKKD  166 (191)
Q Consensus       128 ~~~~~~~~~~~~~~~~~s--~~~~~~v~~l~-~~i~~~~~~~  166 (191)
                      -....+.-..+.|+.+++  ..=++++...- .+|++.+...
T Consensus       355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence            445555555565555444  33344443332 2455555443

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.17  E-value=5.9e-06  Score=63.75  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             EEEEEeCCChhhHHHH----HHh--hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         52 LLDILDTAGQEEYSAM----RDQ--YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      .+.++||+|....+..    ...  ....++.+++|+|.+...   ........+....    ...-+|+||.|...   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a---  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA---  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC---
Confidence            6789999995543221    111  133578888999986642   2222233332211    13467889999754   


Q ss_pred             CHHHHHHHHHHcCCCEEEec
Q psy11135        126 DMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ..-.+-.+....+.|+.+++
T Consensus       247 ~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             cccHHHHHHHHHCcCEEEEe
Confidence            23345556667777776665

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.16  E-value=6e-05  Score=52.15  Aligned_cols=85  Identities=16%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||+|....+.    ....+  ....+-+++|.+++....  .+.. ........    .+--+|.||.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~----~~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAF----GIDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHS----STCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhcc----cCceEEEEeecCCC--
Confidence            4578999999443221    11111  114677888888876432  2222 22222211    13367799999864  


Q ss_pred             cCHHHHHHHHHHcCCCEEEec
Q psy11135        125 VDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s  145 (191)
                       ..-.+-.+....+.|+-.++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE
T ss_pred             -CcccceeHHHHhCCCeEEEE
Confidence             33455666777788877666

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0465|consensus

Probab=98.14  E-value=8.4e-06  Score=63.88  Aligned_cols=111  Identities=18%  Similarity=0.207  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-----CCCCccC-Cc----------c-ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-----FVDEYDP-TI----------E-DSYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-----~~~~~~~-~~----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      +|.+.-+-.+||||+-++++...     +...... ++          + +....-..+....+.+.++|||||.++.-.
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E  120 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE  120 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence            35566677899999999876332     1111000 00          0 000011122233666899999999988776


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      .+..++--|+.+++++....-.- .....++++.++    +.|.+..+||+|-
T Consensus       121 VeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~ry----~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  121 VERALRVLDGAVLVLDAVAGVES-QTETVWRQMKRY----NVPRICFINKMDR  168 (721)
T ss_pred             ehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHhc----CCCeEEEEehhhh
Confidence            67777778888888877552211 223344455554    6899999999996

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.13  E-value=0.00014  Score=54.06  Aligned_cols=95  Identities=9%  Similarity=0.118  Sum_probs=52.2

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcc--------cCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMR--------TGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      ....++++.|..+...+...++.        ..++++.++|+.+-..... ......++..       .=+||+||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            44567899998776665555422        2477889999876332111 1111122221       238999999988


Q ss_pred             CCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHH
Q psy11135        122 TWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       122 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~  156 (191)
                      ..   .+......+.++  ++++.++ ........++
T Consensus       164 ~~---~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        164 GE---AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             CH---HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            62   244444445444  4566544 3334444444

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=6e-05  Score=57.88  Aligned_cols=136  Identities=15%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-----CC-------CccCCc-------cceEEEEEE------------EcCeEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-----VD-------EYDPTI-------EDSYRKQVV------------IDGETALL   53 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-----~~-------~~~~~~-------~~~~~~~~~------------~~~~~~~~   53 (191)
                      .|+++|+.|+||||++..|.+...     ..       .+....       .........            ..-....+
T Consensus       193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d~  272 (420)
T PRK14721        193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHM  272 (420)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCCE
Confidence            689999999999999998865321     00       000000       000000000            00122347


Q ss_pred             EEEeCCChhhHH----HHHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135         54 DILDTAGQEEYS----AMRDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        54 ~~~D~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  127 (191)
                      .++||+|....+    .....+.  ....-.++|.+.+...  ..+......+..     --+-=+|+||.|...   ..
T Consensus       273 VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~-----~~~~~~I~TKlDEt~---~~  342 (420)
T PRK14721        273 VLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG-----HGIHGCIITKVDEAA---SL  342 (420)
T ss_pred             EEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeeeCCC---Cc
Confidence            789999944321    2222221  2234567888887422  223333322222     124578899999865   44


Q ss_pred             HHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        128 NQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       128 ~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      -.+-.+....+.|+.+++  +|.++
T Consensus       343 G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        343 GIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             cHHHHHHHHhCCCEEEEE--CCCCc
Confidence            455667777788877766  34444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.12  E-value=2.2e-05  Score=51.84  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |.++|.+|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998853

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1424|consensus

Probab=98.11  E-value=5e-06  Score=63.89  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      +.|.++|.|+|||||+||+|.+.+..+... |....++.. +.+. ..  +.+.|+||.
T Consensus       315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT-i~ls-~~--v~LCDCPGL  369 (562)
T KOG1424|consen  315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT-IFLS-PS--VCLCDCPGL  369 (562)
T ss_pred             eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE-EEcC-CC--ceecCCCCc
Confidence            779999999999999999999998543322 222222222 2222 22  568999994

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=0.00016  Score=54.85  Aligned_cols=85  Identities=14%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhH-----HHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEY-----SAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~-----~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||+|....     ..+.... ....+.+++|.|++-..  ..+......+..     -..-=+|+||.|...  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~--  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA--  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCC--
Confidence            46889999995431     1222211 12346677888775422  233333333332     124578899999865  


Q ss_pred             cCHHHHHHHHHHcCCCEEEec
Q psy11135        125 VDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s  145 (191)
                       ..-.+-.++...+.|+.+++
T Consensus       392 -k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             33445566777787766655

>PRK13695 putative NTPase; Provisional

Probab=98.07  E-value=0.00023  Score=48.31  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        106 AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       106 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ..+.|++++.+|..      .......+....+..+++++   .+|=+++.+.+++.+
T Consensus       124 ~~~~~~i~v~h~~~------~~~~~~~i~~~~~~~i~~~~---~~~r~~~~~~~~~~~  172 (174)
T PRK13695        124 DSEKPVIATLHRRS------VHPFVQEIKSRPGGRVYELT---PENRDSLPFEILNRL  172 (174)
T ss_pred             hCCCeEEEEECchh------hHHHHHHHhccCCcEEEEEc---chhhhhHHHHHHHHH
Confidence            34679999999843      22345556666667777775   344457777777654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=6e-05  Score=56.86  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhHH----HHHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEYS----AMRDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~----~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||+|....+    .....+..  ..+.+++|.+.+.  ....+......+..     -.+--+|.||.|...  
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~-----l~i~glI~TKLDET~--  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE-----IPIDGFIITKMDETT--  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc-----CCCCEEEEEcccCCC--
Confidence            568899999964222    11222222  2355555655532  22223332222211     124578899999764  


Q ss_pred             cCHHHHHHHHHHcCCCEEEec
Q psy11135        125 VDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s  145 (191)
                       ..-.+-.++...+.|+.+++
T Consensus       357 -~~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             34455667777888877766

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=6.8e-05  Score=61.38  Aligned_cols=138  Identities=20%  Similarity=0.163  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CC-----------CccCCc-------cceEEEEEE-E-----------cCeEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VD-----------EYDPTI-------EDSYRKQVV-I-----------DGETALL   53 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~-----------~~~~~~-------~~~~~~~~~-~-----------~~~~~~~   53 (191)
                      -|+|+|+.|+||||.+..|..... ..           .+....       ......... .           ....+.+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            478999999999999998874321 00           000000       000000000 0           0122357


Q ss_pred             EEEeCCChhh----HHHHHHhh--cccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         54 DILDTAGQEE----YSAMRDQY--MRTGEGFLLVFAVNS-MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        54 ~~~D~~g~~~----~~~~~~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                      .|+||+|...    ........  ....+-.++|.|.+. .+.+.   +....+.....  --+-=+|+||.|...   .
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~---~i~~~f~~~~~--~~i~glIlTKLDEt~---~  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN---EVVHAYRHGAG--EDVDGCIITKLDEAT---H  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH---HHHHHHhhccc--CCCCEEEEeccCCCC---C
Confidence            8999999321    11222221  223455678888765 33333   33333322110  014468899999865   3


Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        127 MNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      .-.+-.+....+.|+.+++  +|++|
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            3445566777788877766  44444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.06  E-value=1.7e-06  Score=58.97  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=42.3

Q ss_pred             EEEEEEeCCChhhHHHH--HH---hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         51 ALLDILDTAGQEEYSAM--RD---QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~--~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      ....++++.|.......  ..   ...-..+.++.++|..+-.........+.....+      .=++|+||+|+.+...
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDEQ  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChhh
Confidence            34566788885544333  00   1122467888999997754333343333333332      2389999999876332


Q ss_pred             CHHHHHHHHHHcC
Q psy11135        126 DMNQAQELAEQFN  138 (191)
Q Consensus       126 ~~~~~~~~~~~~~  138 (191)
                      ..+...+..++.+
T Consensus       159 ~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 KIERVREMIRELN  171 (178)
T ss_dssp             -HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHC
Confidence            2244444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.06  E-value=7.4e-05  Score=50.68  Aligned_cols=84  Identities=14%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             EEEEEEEeCCChhhHH----HHHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYS----AMRDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++|++|....+    .....+.  ...+.+++|++......   .......+....   + ..-+|.||.|... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~-  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA-  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC-
Confidence            3457789999964221    1112221  24888999999865432   223333333221   2 3577779999765 


Q ss_pred             ccCHHHHHHHHHHcCCCEEE
Q psy11135        124 AVDMNQAQELAEQFNIPFIK  143 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~  143 (191)
                        ........+...++|+..
T Consensus       154 --~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 --RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --CcchhhhhHHHHCcCeEe
Confidence              222333366666766544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.06  E-value=0.00016  Score=56.02  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             EEEEEEeCCChhhHH----HHHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         51 ALLDILDTAGQEEYS----AMRDQYMR---TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      +.+.++||+|....+    .....++.   ...-.++|++.+...  ..+...+..+...     .+--++.||.|... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~-----~~~~vI~TKlDet~-  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL-----PLDGLIFTKLDETS-  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC-----CCCEEEEecccccc-
Confidence            468899999954322    12222233   234566777775532  2333333333221     13468999999854 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEec
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                        ....+..+....+.|+.+++
T Consensus       372 --~~G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT  391 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe
Confidence              33456677778888877766

>KOG0464|consensus

Probab=98.05  E-value=1.9e-06  Score=64.72  Aligned_cols=130  Identities=17%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-----CCCccCCc-c-----------ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-----VDEYDPTI-E-----------DSYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-----~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      +|.++..-.+||||.-.+++.-.-     .....+.+ .           +....-+.++.+.+.+.++||||+.++.-.
T Consensus        39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le  118 (753)
T KOG0464|consen   39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE  118 (753)
T ss_pred             cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence            577889999999999999863221     11111111 0           111223445666667999999999998888


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP  140 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  140 (191)
                      .+.+++--|+++.|||.+..-.-..+.-|.+.     ...++|-+.++||+|..... .......+..++++.
T Consensus       119 verclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~an-fe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLAAN-FENAVDSIEEKLGAK  185 (753)
T ss_pred             HHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhhhh-hhhHHHHHHHHhCCc
Confidence            88888899999999999875444444444322     23478999999999987533 223345555666653

>KOG0459|consensus

Probab=97.98  E-value=1.3e-05  Score=60.09  Aligned_cols=153  Identities=20%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCC------------------Ccc----CCcc-------ceEEEEEEEcCeEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-FVD------------------EYD----PTIE-------DSYRKQVVIDGETAL   52 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~------------------~~~----~~~~-------~~~~~~~~~~~~~~~   52 (191)
                      -++++|+|...+||||+-..+.... ...                  -|.    .+..       +.-.....+....-.
T Consensus        79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~  158 (501)
T KOG0459|consen   79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKR  158 (501)
T ss_pred             CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEeccee
Confidence            4789999999999999866653211 000                  000    0000       000111122223334


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHH--HHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYR--EQIKRVKDAEEVPMVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~--~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  127 (191)
                      +.+.|.||+..+-...-....++|..+++.++...+   -|+.--+-.  ..+..  -.....+|+++||+|...-+-+.
T Consensus       159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak--t~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH--hhccceEEEEEEeccCCccCcch
Confidence            888999998887655555566788887887774322   122111111  11111  12245789999999976522222


Q ss_pred             HH-------HHHHHHHcC------CCEEEeccCCCCCHHHHHH
Q psy11135        128 NQ-------AQELAEQFN------IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       128 ~~-------~~~~~~~~~------~~~~~~s~~~~~~v~~l~~  157 (191)
                      +.       ...|.+.+|      .-|+++|..+|.++++...
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            22       233444444      3489999999999887654

>PRK10867 signal recognition particle protein; Provisional

Probab=97.98  E-value=0.00013  Score=56.29  Aligned_cols=87  Identities=15%  Similarity=0.033  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++||+|....+    .....+  ....+.+++|.|.....   ........+....    ...-+|.||.|... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~----~i~giIlTKlD~~~-  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL----GLTGVILTKLDGDA-  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC----CCCEEEEeCccCcc-
Confidence            3568899999943211    111111  12466778888876532   2333333343311    13467779999643 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEecc
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s~  146 (191)
                        ..-.+...+...+.|+.+++.
T Consensus       255 --rgG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              222366677777888766553

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.98  E-value=6.6e-05  Score=58.59  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             EEEEEeCCChhhHHH---HHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         52 LLDILDTAGQEEYSA---MRDQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      ...++||+|....+.   .....+..   ..-.++++|.+...  ..+......+..     ...--+|+||.|...   
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~-----~~~~g~IlTKlDet~---  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG-----PGLAGCILTKLDEAA---  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc-----CCCCEEEEeCCCCcc---
Confidence            467899999332221   11111221   22256777775422  233333222222     224467789999754   


Q ss_pred             CHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        126 DMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..-.+-.+....+.|+.+++  .|++|
T Consensus       406 ~~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence            44455667777788877776  45555

>TIGR00959 ffh signal recognition particle protein

Probab=97.94  E-value=3e-05  Score=59.76  Aligned_cols=87  Identities=16%  Similarity=0.036  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++||||....+    .....+  ....+.+++|.|.....   ........+....    ...=+|.||.|... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~~-  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGDA-  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCcc-
Confidence            3568899999943221    111111  22467788999986532   3334444443322    13467799999643 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEecc
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s~  146 (191)
                        ..-.+..++...+.|+.+++.
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              223366777788888776553

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.93  E-value=0.00013  Score=53.23  Aligned_cols=92  Identities=17%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             HHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH-HHHHHHHHHcCCCEEEe
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM-NQAQELAEQFNIPFIKT  144 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~  144 (191)
                      +.+.-..+.|-.++++.+.+|+ ++..+..++-..    ...++.-++++||+|+.+..... ++...+...+|++++.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            3334455577777777777765 445454444333    33467778889999998743333 45667788899999999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy11135        145 SAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~  162 (191)
                      |++++.+++++.+.+...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999998876543

>KOG2485|consensus

Probab=97.92  E-value=1.1e-05  Score=58.36  Aligned_cols=59  Identities=29%  Similarity=0.452  Sum_probs=36.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      +++++|+|-||+|||||+|++........      ..+.........+.+.... .+.+.||||.-
T Consensus       143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil  207 (335)
T KOG2485|consen  143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL  207 (335)
T ss_pred             ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence            68999999999999999999865442211      1111112222223333333 27889999943

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.85  E-value=0.00036  Score=50.22  Aligned_cols=20  Identities=35%  Similarity=0.698  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |+++|.+||||||+.+.+..
T Consensus         2 Ivl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999998864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.83  E-value=0.0011  Score=49.93  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=25.1

Q ss_pred             EEEEEEeCCChhhHHHHHHhhc-------ccCCEEEEEEeCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYM-------RTGEGFLLVFAVNS   86 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~   86 (191)
                      +...++++.|......+...+.       -..++++.++|+.+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~  135 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA  135 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence            3566899999877666555542       13578899999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG4273|consensus

Probab=97.82  E-value=0.00047  Score=48.76  Aligned_cols=163  Identities=18%  Similarity=0.244  Sum_probs=92.8

Q ss_pred             EEEEEcCCCC--CHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEE--EEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          5 KLVVVGAGGV--GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALL--DILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         5 ~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      -++|+|..|+  ||.+++.+|....+.....+...+.+ ..++++++-|.-  .+.-.+--+++.-..........++++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            3689999999  99999999987775433322222222 223455444321  111111001111111122334678899


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC----------------------------------
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD----------------------------------  126 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----------------------------------  126 (191)
                      +||++....+..+..|+....- ..  ---++.++||.|..+....                                  
T Consensus        85 vfdlse~s~l~alqdwl~htdi-ns--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDI-NS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEeccchhhhHHHHhhcccccc-cc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999999999999998742210 00  1135677888886442211                                  


Q ss_pred             -----------HHHHHHHHHHcCCCEEEeccCC------------CCCHHHHHHHHHHHHHhhhhhhh
Q psy11135        127 -----------MNQAQELAEQFNIPFIKTSAKT------------RMGVDDAFYTLVREIKKDKMLRG  171 (191)
Q Consensus       127 -----------~~~~~~~~~~~~~~~~~~s~~~------------~~~v~~l~~~i~~~~~~~~~~~~  171 (191)
                                 .....+++.+.|+.+++.++.+            ..|++.+|.++...+.+....+.
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk~  229 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILKN  229 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceecc
Confidence                       1123445556677788877632            24788999888777665544443

>KOG2484|consensus

Probab=97.81  E-value=2.7e-05  Score=58.25  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      +.+++.|+|.|++||||+||+|..+..........-+..--.+..+ ..  +.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~--i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KK--IRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CC--ceeccCCce
Confidence            3689999999999999999999988864433222222211112222 22  678999993

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.80  E-value=0.00051  Score=48.17  Aligned_cols=78  Identities=17%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ  131 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  131 (191)
                      .+.++||-.-  ..++.+...+++|.+++|.|.+-. ++..... +..+.+...  -.++.+|+||.|..     .....
T Consensus       135 e~VivDtEAG--iEHfgRg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~elg--~k~i~~V~NKv~e~-----e~~~~  203 (255)
T COG3640         135 EVVIVDTEAG--IEHFGRGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAEELG--IKRIFVVLNKVDEE-----EELLR  203 (255)
T ss_pred             cEEEEecccc--hhhhccccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHHhC--CceEEEEEeeccch-----hHHHH
Confidence            3455554321  223334456679999999998663 3333322 223322221  27999999999953     34455


Q ss_pred             HHHHHcCCC
Q psy11135        132 ELAEQFNIP  140 (191)
Q Consensus       132 ~~~~~~~~~  140 (191)
                      ..+...+.+
T Consensus       204 ~~~~~~~~~  212 (255)
T COG3640         204 ELAEELGLE  212 (255)
T ss_pred             hhhhccCCe
Confidence            555666543

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.79  E-value=2.5e-05  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=0.00014  Score=55.62  Aligned_cols=145  Identities=17%  Similarity=0.157  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-C--------CC--CccCCcc-------ceEEEE-EEE----------cCeEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-F--------VD--EYDPTIE-------DSYRKQ-VVI----------DGETALLD   54 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~--------~~--~~~~~~~-------~~~~~~-~~~----------~~~~~~~~   54 (191)
                      .-|+++|++||||||++..|.... .        ..  .+.....       ...... ...          ....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886321 0        00  0000000       000000 000          11244578


Q ss_pred             EEeCCChhhH--H--HHHHhhcc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         55 ILDTAGQEEY--S--AMRDQYMR-----TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        55 ~~D~~g~~~~--~--~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      ++||+|....  .  ..+..++.     ...-.++|.|++...  +.+......+..     --+-=+|.||.|...   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~-----~~~~glIlTKLDEt~---  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES-----LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC-----CCCCEEEEEcccCCC---
Confidence            9999995421  1  11112121     233567788876643  123333322221     124578899999864   


Q ss_pred             CHHHHHHHHHHcCCCEEEec--cCCCCCHHHHHHH
Q psy11135        126 DMNQAQELAEQFNIPFIKTS--AKTRMGVDDAFYT  158 (191)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~s--~~~~~~v~~l~~~  158 (191)
                      ..-.+-.+....+.|+.+++  ..-++++...-..
T Consensus       374 ~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~  408 (432)
T PRK12724        374 FLGSFLELADTYSKSFTYLSVGQEVPFDILNATKN  408 (432)
T ss_pred             CccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHH
Confidence            33345566677787766655  3345565555443

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.78  E-value=8.7e-05  Score=55.37  Aligned_cols=100  Identities=20%  Similarity=0.157  Sum_probs=70.4

Q ss_pred             EeCCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH
Q psy11135         56 LDTAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA  134 (191)
Q Consensus        56 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  134 (191)
                      -+.||+. ++.......+..+|+++-+.|+.++.+-.     ...+..+..  +.|.++|+||+|+.+..+..+-.+.+.
T Consensus        15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~   87 (322)
T COG1161          15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFK   87 (322)
T ss_pred             cCCCCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHH
Confidence            3447755 56667788899999999999999976522     122223222  345599999999998666555556666


Q ss_pred             HHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135        135 EQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       135 ~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++.+...+.+++..+.+...+..++...
T Consensus        88 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~  115 (322)
T COG1161          88 KEEGIKPIFVSAKSRQGGKKIRKALEKL  115 (322)
T ss_pred             hcCCCccEEEEeecccCccchHHHHHHH
Confidence            6667888889999888877777654444

>PRK08118 topology modulation protein; Reviewed

Probab=97.78  E-value=2.5e-05  Score=52.70  Aligned_cols=23  Identities=43%  Similarity=0.746  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ||+|+|++|||||||.+.|....
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999997654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.77  E-value=2.5e-05  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .||+++|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999876

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.77  E-value=0.00066  Score=49.32  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=49.6

Q ss_pred             EEEEEEEeCCChhhH-----HHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEY-----SAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~-----~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++||+|....     ..+.... ....+-+++|.+++...  ..+..++..+..     -.+--+|.||.|... 
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~-  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA-  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCC-
Confidence            356889999995521     1222111 12345678888876422  133344444332     234578999999865 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEec
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                        ..-.+-.++...+.|+.+++
T Consensus       226 --~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 --SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             --CccHHHHHHHHHCcCEEEEe
Confidence              33345566677787776665

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.73  E-value=0.00059  Score=44.35  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      -+++.|++|+|||++++.+...-.
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhh
Confidence            478999999999999999986553

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.72  E-value=4.2e-05  Score=42.21  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      .++.|+.|+|||||+.++.-
T Consensus        26 tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998853

>PRK07261 topology modulation protein; Provisional

Probab=97.72  E-value=3.5e-05  Score=52.18  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +|+++|++|+|||||.+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.0012  Score=50.44  Aligned_cols=91  Identities=14%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             EEEEEEEeCCChhhHHH----HHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         50 TALLDILDTAGQEEYSA----MRDQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .+.+.++||+|....+.    ....++..   ..-.++|.|++...  ..+...+.....     -.+-=+|+||.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence            35688999999543221    11122222   22577888887742  233333333322     125578999999764


Q ss_pred             CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                         ..-.+-.+....+.|+.+++  .|.++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence               33445566677787776665  34444

>KOG1970|consensus

Probab=97.70  E-value=0.00095  Score=52.34  Aligned_cols=88  Identities=13%  Similarity=0.106  Sum_probs=44.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      -.+|++=|+-+....+........+..+......|+|+++|-+-..... -......++-...++..+...+....-++.
T Consensus       195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK  274 (634)
T KOG1970|consen  195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK  274 (634)
T ss_pred             ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence            3457777776644333333333333344445678999999987654311 111112233344555555555555444555


Q ss_pred             HHHHHHHHH
Q psy11135        155 AFYTLVREI  163 (191)
Q Consensus       155 l~~~i~~~~  163 (191)
                      .+..|....
T Consensus       275 ~L~ric~~e  283 (634)
T KOG1970|consen  275 FLKRICRIE  283 (634)
T ss_pred             HHHHHHHHh
Confidence            554444443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.70  E-value=9e-05  Score=49.98  Aligned_cols=135  Identities=20%  Similarity=0.373  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeC-CCh----------------------
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDT-AGQ----------------------   61 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~----------------------   61 (191)
                      +|++.|++|+||||+++++...-.....  .....+.....-++...-+.+.|. .|.                      
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~--~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL--PVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG--GEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC--ccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            6899999999999999998743311110  111122222223344444444454 220                      


Q ss_pred             hhHHHH----HHhhcccCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         62 EEYSAM----RDQYMRTGEGFLLVFAVN-SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        62 ~~~~~~----~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                      +.+...    ....+..++  ++++|-- .-|-  ....+...+..... .+.|++.++.+.-      .....+.+.+.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl--~~~~F~~~v~~~l~-s~~~vi~vv~~~~------~~~~l~~i~~~  147 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMEL--KSPGFREAVEKLLD-SNKPVIGVVHKRS------DNPFLEEIKRR  147 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCC--C-CHHHHHHHHHHC-TTSEEEEE--SS--------SCCHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhh--cCHHHHHHHHHHHc-CCCcEEEEEecCC------CcHHHHHHHhC
Confidence            011111    111112333  5666632 2111  01223333444333 5678888877762      12345667777


Q ss_pred             cCCCEEEeccCCCCCH
Q psy11135        137 FNIPFIKTSAKTRMGV  152 (191)
Q Consensus       137 ~~~~~~~~s~~~~~~v  152 (191)
                      .++.+++++..+.+.+
T Consensus       148 ~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  148 PDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTSEEEE--TTTCCCH
T ss_pred             CCcEEEEeChhHHhhH
Confidence            7888998887666543

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.67  E-value=0.0006  Score=41.10  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-HHhhcccCCEEEEEEeC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-RDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~   84 (191)
                      +++.|.+|+||||+...+...-....+.         ...++    .+.++|+++....... .......++.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            6788999999999988876443211111         11122    4678999986543321 13445678888888877


Q ss_pred             CCh
Q psy11135         85 NSM   87 (191)
Q Consensus        85 ~~~   87 (191)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.66  E-value=4.4e-05  Score=49.96  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+++|++||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999743

...

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.65  E-value=0.00036  Score=37.64  Aligned_cols=45  Identities=24%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .-.++++|++|.+...  +.+.-...+..+...  ..+.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            3478999999998843  455556666666654  23789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.62  E-value=7e-05  Score=42.62  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |++.|++|+||||+.+.+...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999997653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK08233 hypothetical protein; Provisional

Probab=97.61  E-value=7.5e-05  Score=50.95  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+..-|++.|.+|+|||||.++|...
T Consensus         1 ~~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhh
Confidence            66788999999999999999999754

>KOG0469|consensus

Probab=97.60  E-value=9.9e-05  Score=57.08  Aligned_cols=123  Identities=24%  Similarity=0.318  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCC-CccC------Cccc------eEEE-----------------EEEEcCeEEEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH-FVD-EYDP------TIED------SYRK-----------------QVVIDGETALL   53 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~-~~~-~~~~------~~~~------~~~~-----------------~~~~~~~~~~~   53 (191)
                      ++-|+.+...|||||-..|.... +.+ ...+      +-.+      ....                 ...-++..+.+
T Consensus        21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi  100 (842)
T KOG0469|consen   21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI  100 (842)
T ss_pred             cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence            34577888999999999997554 211 1000      0000      0000                 01124556789


Q ss_pred             EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC--CCccCHHHHH
Q psy11135         54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS--TWAVDMNQAQ  131 (191)
Q Consensus        54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~  131 (191)
                      .++|.||+.++.+.....++-.|+.++|+|-.+.--...-.-+.+.+..     .+.-++++||.|-.  +.+++.++..
T Consensus       101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DRAlLELq~~~EeLy  175 (842)
T KOG0469|consen  101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDRALLELQLSQEELY  175 (842)
T ss_pred             EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhHHHHhhcCCHHHHH
Confidence            9999999999999988889999999999997662211111112222222     23347889999953  3566766654


Q ss_pred             H
Q psy11135        132 E  132 (191)
Q Consensus       132 ~  132 (191)
                      +
T Consensus       176 q  176 (842)
T KOG0469|consen  176 Q  176 (842)
T ss_pred             H
Confidence            3

>KOG2423|consensus

Probab=97.60  E-value=2.6e-05  Score=58.45  Aligned_cols=56  Identities=18%  Similarity=0.212  Sum_probs=0.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      +.+.|.++|.|++||||+||+|...+++... |..+++....+..-.+.  +-++|+||
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmkr--IfLIDcPG  361 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMKR--IFLIDCPG  361 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHhc--eeEecCCC

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.60  E-value=4e-05  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ||+++|.+|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.59  E-value=7.7e-05  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |+++|++|||||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998755

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.57  E-value=0.00082  Score=50.55  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..+|++.|+.|+|||||++++.+.-
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHccc
Confidence            3579999999999999999998654

>PRK01889 GTPase RsgA; Reviewed

Probab=97.56  E-value=9e-05  Score=56.08  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|.+|+|||||++.+.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            68999999999999999998755

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.54  E-value=0.0011  Score=52.58  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.||+||||||.++.|...
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999998754

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.52  E-value=0.00055  Score=44.70  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=58.7

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC-------CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          7 VVVGAGGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.-|.+|+|||++.-.+...-..       -+.++...          ...+.+.++|+|+...  ......+..+|.++
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----------~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vv   71 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----------NLDYDYIIIDTGAGIS--DNVLDFFLAADEVI   71 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----------CCCCCEEEEECCCCCC--HHHHHHHHhCCeEE
Confidence            35688999999997665422100       01111100          0115688999997543  33345688899998


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      ++.+.+.. ++......+..+...  ....++.+|+|+.+..
T Consensus        72 iv~~~~~~-s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~  110 (139)
T cd02038          72 VVTTPEPT-SITDAYALIKKLAKQ--LRVLNFRVVVNRAESP  110 (139)
T ss_pred             EEcCCChh-HHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence            88887643 344444444444332  1345788999998743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=97.52  E-value=0.0049  Score=43.27  Aligned_cols=90  Identities=11%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCChhhHHHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~  127 (191)
                      .+.+.++|++|........... .+.+|.++++...+. .++..+......+.......+.+ ..++.|+.+..   ...
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~---~~~  191 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD---RET  191 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc---cHH
Confidence            3567788887644322221111 236888888886643 34444444444444432222333 45899999854   344


Q ss_pred             HHHHHHHHHcCCCEEE
Q psy11135        128 NQAQELAEQFNIPFIK  143 (191)
Q Consensus       128 ~~~~~~~~~~~~~~~~  143 (191)
                      +...++.+.++.+++.
T Consensus       192 ~~~~~~~~~~~~~vl~  207 (212)
T cd02117         192 ELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            5567788888876654

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00012  Score=50.73  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV   29 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~   29 (191)
                      .++++|++|||||||++.+.+-+.+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~   54 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEP   54 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCC
Confidence            4689999999999999999776643

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.51  E-value=0.00011  Score=50.37  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .=|+++|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            447899999999999999998654

>PRK04195 replication factor C large subunit; Provisional

Probab=97.51  E-value=0.003  Score=49.99  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -+++.|++|+||||+++.+...-
T Consensus        41 ~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         41 ALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999997654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.51  E-value=0.0047  Score=42.07  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999998765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.50  E-value=0.00053  Score=45.82  Aligned_cols=55  Identities=24%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   74 (191)
                      .|++.|++|||||||++.+..-..+     +.+     ...+.++.     +.+.+.+.++.....+...
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp-----~~G-----~l~f~Ge~-----vs~~~pea~Rq~VsY~~Q~   85 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISP-----TSG-----TLLFEGED-----VSTLKPEAYRQQVSYCAQT   85 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCC-----CCc-----eEEEcCcc-----ccccChHHHHHHHHHHHcC
Confidence            4789999999999999998754422     212     23455555     3455666666655544433

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.50  E-value=0.00013  Score=55.89  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -+|+|+|.+|+|||||+++|...
T Consensus       220 ~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        220 RTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>PRK14530 adenylate kinase; Provisional

Probab=97.49  E-value=0.00012  Score=51.58  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=21.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |..-+|+++|++||||||+.+.|..
T Consensus         1 ~~~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          1 MSQPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3455899999999999999999864

>PRK06217 hypothetical protein; Validated

Probab=97.48  E-value=0.00012  Score=50.19  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+|+|+|.+||||||+.++|....
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999997553

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.48  E-value=0.00099  Score=49.97  Aligned_cols=25  Identities=16%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..+|+|.|.+|+|||||++++...-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            3579999999999999999997644

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.47  E-value=0.00014  Score=51.03  Aligned_cols=23  Identities=35%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      |+++|++|||||||++-+-+-.-
T Consensus        34 vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcccC
Confidence            68999999999999999965543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.46  E-value=0.00016  Score=48.77  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      .++++|++|+|||||+|-+.+-+.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            578999999999999999987664

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.46  E-value=0.00013  Score=51.03  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|+++|++|||||||++.|....
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhcC
Confidence            457899999999999999997543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.46  E-value=0.00012  Score=47.59  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            47899999999999999998765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.45  E-value=0.00013  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999765

...

>PRK03839 putative kinase; Provisional

Probab=97.44  E-value=0.00014  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +|+++|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998754

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.43  E-value=0.00015  Score=46.56  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998664

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.42  E-value=0.0022  Score=47.02  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=57.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh-----------------------
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ-----------------------   61 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------------------   61 (191)
                      .++++|++|.|||++++++...+.... .+. ..           .+.+..+.+|..                       
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-~~-----------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~  129 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPPQS-DED-AE-----------RIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR  129 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-Cc-----------cccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC
Confidence            578999999999999999998664322 111 11           112334444431                       


Q ss_pred             -hhHHHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135         62 -EEYSAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNK  117 (191)
Q Consensus        62 -~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  117 (191)
                       ..........++...+=++++|--+   ..+....+..++.+......-++|+|.|||.
T Consensus       130 ~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  130 VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence             1112223355666777788888533   1223334444555544444557899999875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.39  E-value=0.0019  Score=39.81  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          6 LVVVG-AGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         6 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      |++.| ..|+||||+...+...-..... +      ......+.. +.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-~------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGK-R------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCC-c------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56666 6699999997776532211110 0      001111111 567899999865332  33667789999888877


Q ss_pred             CChhhHHHHHHHHH
Q psy11135         85 NSMKSFEDIGSYRE   98 (191)
Q Consensus        85 ~~~~s~~~~~~~~~   98 (191)
                      +. .++..+..+++
T Consensus        72 ~~-~s~~~~~~~~~   84 (104)
T cd02042          72 SP-LDLDGLEKLLE   84 (104)
T ss_pred             CH-HHHHHHHHHHH
Confidence            54 34555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK14531 adenylate kinase; Provisional

Probab=97.39  E-value=0.00021  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988644

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.38  E-value=0.00018  Score=46.88  Aligned_cols=21  Identities=43%  Similarity=0.768  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.38  E-value=0.0002  Score=50.82  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++|+|+|+|||||||+...|...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.37  E-value=0.00017  Score=48.88  Aligned_cols=45  Identities=22%  Similarity=0.158  Sum_probs=27.8

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      |+++++.|+.++.+-.. ..+...+ . ....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~-~-l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAV-L-QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHH-H-hccCCCCEEEEEehhhcCCH
Confidence            68999999987532111 1222221 1 12235799999999999753

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00012  Score=49.40  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      =+++.||+|+||||++++|....
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999998766

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.37  E-value=0.012  Score=38.61  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            36899999999999999998765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.0002  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|++|||||||++.+.+-+-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999987663

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.37  E-value=0.00085  Score=49.54  Aligned_cols=140  Identities=17%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------ccCCccceEEEEEE------------E------c
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVV------------I------D   47 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~------------~------~   47 (191)
                      ++-|+++|-.|+||||-|-.|...-....                 +......+....+.            +      .
T Consensus       139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak  218 (340)
T COG0552         139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK  218 (340)
T ss_pred             cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence            57799999999999999988743211000                 00000100000000            0      1


Q ss_pred             CeEEEEEEEeCCChh--------hHHHHHH----hhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy11135         48 GETALLDILDTAGQE--------EYSAMRD----QYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLV  114 (191)
Q Consensus        48 ~~~~~~~~~D~~g~~--------~~~~~~~----~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv  114 (191)
                      ...+.+.++||+|-.        +...+.+    ......+-++++.|++-.. ++...    +.+.....    --=++
T Consensus       219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA----k~F~eav~----l~GiI  290 (340)
T COG0552         219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA----KIFNEAVG----LDGII  290 (340)
T ss_pred             HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH----HHHHHhcC----CceEE
Confidence            234568899999922        1111111    1112234478888887643 33333    22333221    22578


Q ss_pred             EecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135        115 GNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       115 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      +||.|-..+-   -.+-.++..+++|+.++..  |++++++
T Consensus       291 lTKlDgtAKG---G~il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         291 LTKLDGTAKG---GIILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             EEecccCCCc---ceeeeHHHHhCCCEEEEeC--CCChhhc
Confidence            8999954311   1233467788888887762  4444444

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.36  E-value=0.00017  Score=49.52  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .|+++|++|+|||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999996653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.36  E-value=0.00019  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.36  E-value=0.0012  Score=42.64  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.34  E-value=0.00024  Score=46.45  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .|+|+|+.|+|||||+..|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.34  E-value=0.00023  Score=45.92  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFV   29 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~   29 (191)
                      -.+++.|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999876643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.34  E-value=0.00025  Score=49.67  Aligned_cols=25  Identities=16%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +.+.|++.|++|||||||.+.|.+.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999764

>PRK13949 shikimate kinase; Provisional

Probab=97.34  E-value=0.00023  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +|+++|++|+||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.34  E-value=0.0012  Score=45.48  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCC-ccCCccceEEEEEEEcCeEEEEEEEeCCCh---hhHHH-----HHHhhcccCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQ---EEYSA-----MRDQYMRTGE   76 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---~~~~~-----~~~~~~~~~~   76 (191)
                      |++.|.||||||||.+.|...-.... ........+.          ...+||-.-.   +.+..     ......+..+
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~----------~~i~~DEslpi~ke~yres~~ks~~rlldSalk   73 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL----------RGILWDESLPILKEVYRESFLKSVERLLDSALK   73 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh----------hheecccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            67999999999999988754321111 1111111011          1234553321   11111     1112222334


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---------CCccCHHHHHHHHHHc
Q psy11135         77 GFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---------TWAVDMNQAQELAEQF  137 (191)
Q Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---------~~~~~~~~~~~~~~~~  137 (191)
                      --+++.|.+|     ....+..++.........++-|+-.++-+.         ...+..+...++...+
T Consensus        74 n~~VIvDdtN-----YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf  138 (261)
T COG4088          74 NYLVIVDDTN-----YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF  138 (261)
T ss_pred             ceEEEEeccc-----HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence            4456667666     444555555444445567877777766541         1345666666666554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.33  E-value=0.0018  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |++.|++|+||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00018  Score=49.74  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+++|++|||||||++.+-.-.
T Consensus        36 TAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhc
Confidence            5899999999999999886543

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.33  E-value=0.00021  Score=44.16  Aligned_cols=20  Identities=35%  Similarity=0.840  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~   24 (191)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47899999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.33  E-value=0.0066  Score=42.82  Aligned_cols=103  Identities=11%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF--EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM  127 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  127 (191)
                      .+.+.|+|+.|.....  ....+..+|.+++-.-.+..+.-  .....|+.++.. .....+|.-|+.|+..-.......
T Consensus        83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~-~~~~~ip~~Vl~Tr~~~~~~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK-AERRDIPAAVLFTRVPAARLTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEEecCCcchhhHHH
Confidence            3568899999854332  34446678888887766643322  222344444432 345678999999998743212222


Q ss_pred             HHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135        128 NQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       128 ~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ....++.+  ++|++.+...+.....+++.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22333333  48888888888777777776

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.33  E-value=0.0026  Score=43.72  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|++|+||||+++.+.+..
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999998654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.32  E-value=0.00022  Score=50.63  Aligned_cols=24  Identities=29%  Similarity=0.681  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++++|+|++|||||+|+..++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            589999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.32  E-value=0.013  Score=39.64  Aligned_cols=84  Identities=12%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ  131 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  131 (191)
                      .+.++|+|+.....  ....+..+|.++++.+.+.. +...+..++..+...   ......+|+|+.+.... ...+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~-~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV-EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCccccc-chhhHHH
Confidence            57889999854332  33446788999888877653 344444444444331   12357789999986542 2222245


Q ss_pred             HHHHHcCCCEE
Q psy11135        132 ELAEQFNIPFI  142 (191)
Q Consensus       132 ~~~~~~~~~~~  142 (191)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            56666777654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.31  E-value=0.0012  Score=44.67  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=19.9

Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++||.+++=+.+++..+.....+.
T Consensus       179 PTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         179 PTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhC
Confidence            489999999999999888777653

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.30  E-value=0.00022  Score=48.60  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|+++|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.30  E-value=0.0012  Score=41.93  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|++-|+-|+|||||++.+...-
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999998654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG1533|consensus

Probab=97.29  E-value=0.00042  Score=48.57  Aligned_cols=20  Identities=35%  Similarity=0.572  Sum_probs=16.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQL   23 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l   23 (191)
                      +--+|+|+||+||||..+-.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             cceEEEcCCCCCccchhhhH
Confidence            55689999999999987654

>TIGR00235 udk uridine kinase

Probab=97.28  E-value=0.00034  Score=48.91  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ..-|++.|++|||||||++.+.+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.28  E-value=0.0003  Score=47.67  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +.-+|+++|++|+||||+.+.+...
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHH
Confidence            3457999999999999999999754

>PRK14532 adenylate kinase; Provisional

Probab=97.28  E-value=0.00027  Score=48.60  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999754

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.27  E-value=0.00026  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |++.|++|||||||++.+.+.-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999997653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.27  E-value=0.00028  Score=47.98  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .++++|+.|+|||||++.+..
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            578999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00301 uridine kinase; Provisional

Probab=97.26  E-value=0.00036  Score=48.80  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHH
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~   24 (191)
                      |+-+=|++.|.+|||||||.+.+.
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~   24 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIV   24 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHH
Confidence            667889999999999999998775

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.26  E-value=0.00029  Score=45.89  Aligned_cols=21  Identities=33%  Similarity=0.580  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+++|++|+|||+|++.+...
T Consensus         2 vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-74
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-73
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-73
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-73
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-73
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-72
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-72
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-72
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-72
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-71
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-71
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-71
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-71
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-71
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-71
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-71
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-71
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-71
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-71
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-71
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-71
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-71
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-71
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-71
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-71
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-71
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-71
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-71
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-71
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-71
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		5e-71
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-71
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-70
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-70
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-70
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-70
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-70
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-70
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-70
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-70
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-70
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-70
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-69
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-69
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-48
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-46
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-45
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-45
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-45
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-45
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-44
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-44
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-44
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-44
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-43
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-43
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		3e-43
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		9e-43
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		9e-43
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-40
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-40
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-37
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-27
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-25
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-25
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		7e-25
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		7e-25
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		9e-24
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-23
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-22
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-22
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-22
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-22
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-22
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-22
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-22
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-22
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-21
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		8e-21
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		8e-21
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-20
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-19
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-19
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-19
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-19
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-18
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-18
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-18
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-18
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-18
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		4e-18
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-18
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-18
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-17
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-17
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-17
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-17
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-17
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-17
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-17
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		7e-17
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-17
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-17
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		9e-17
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		9e-17
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-17
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-16
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-16
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-16
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-16
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-16
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-16
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-16
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		7e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-16
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-15
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-15
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-15
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-15
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-15
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-15
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-15
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-15
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-15
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-15
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-15
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		8e-15
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-14
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-14
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-14
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-14
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-14
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-14
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-14
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-14
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-14
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-14
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-14
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-14
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-14
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-14
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		9e-14
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-13
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-13
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-13
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-13
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		5e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-13
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-13
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		7e-13
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		9e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-12
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-12
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-12
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-12
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-12
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-12
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-12
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-12
1mh1_A	186	Small G-Protein Length = 186		2e-12
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-12
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-12
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-12
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-12
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-12
2kb0_A	178	Cdc42(T35a) Length = 178		6e-12
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		7e-12
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		7e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		7e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		7e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		8e-12
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		8e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		9e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-11
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-11
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-11
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-11
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-11
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-11
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-11
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-11
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-11
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-11
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-11
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-11
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-11
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		8e-11
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-10
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-10
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-10
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-10
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		5e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-09
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-09
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-09
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-09
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-09
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-09
1byu_A	216	Canine Gdp-Ran Length = 216		4e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-09
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-09
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-09
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-09
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-09
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-08
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-08
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-08
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-08
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-08
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-08
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-08
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-08
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-08
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-08
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-08
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		8e-08
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		6e-07
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-04

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNKCDL
Sbjct: 79  HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 139 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 185

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 141/166 (84%)
Query: 2   AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
            EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQ
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNKCDL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           +  VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score =  268 bits (685), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 150/190 (78%), Gaps = 2/190 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++ K+ +     + G  
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPG 180
Query: 181 GNKLKQCCVL 190
               K  CVL
Sbjct: 181 CMSCK--CVL 188

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/168 (77%), Positives = 142/168 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSF DI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 79  QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
            T  VD  QA ELA+ + IPFI+TSAKTR GV+DAFYTLVREI++ +M
Sbjct: 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++ K+
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++ K+
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score =  265 bits (677), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  265 bits (677), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 8   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 67
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 68  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 142/167 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVD+YDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++ K
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGN+CDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score =  264 bits (674), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDP+IEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDT G
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIE+SYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRD+YMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         K+ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDE+DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDP+IEDSYRKQVVIDGET LLDILDTAG
Sbjct: 7   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 66
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 67  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 127 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score =  263 bits (672), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           +EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  KEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  263 bits (672), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVRE ++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score =  263 bits (672), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDT G
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score =  263 bits (671), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE  LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  VEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 141/165 (85%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFV++YDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE SAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  IEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66  LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score =  260 bits (664), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 140/167 (83%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTA 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++ K
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 139/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTA 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score =  258 bits (658), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 139/165 (84%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALTIQLIQNHFVDE DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           Y+L         KSALTIQ IQ++FV +YDPTIEDSY KQ VID   A LDILDTAGQEE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
           + AMR+QYMRTGEGFLLVF+V    SFE+I  ++ QI RVKD +E PM+L+GNK DL   
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ 125
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V   + Q+LA Q  + +++ SAK RM VD AF+ LVR I+K
Sbjct: 126 RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALT+Q +Q  FVDEYDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALT+Q +Q  FV++YDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKL         KSALTIQ  Q  FVDEYDPTIEDSYRK   ID + A+LD+LDTAG
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAG 75
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALT+Q +Q  FV++YDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 3   MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 62
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD ++VPM+LVGNKCDL
Sbjct: 63  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 122
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 123 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  176 bits (447), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKL         KSALT+Q +Q  FV++YDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD ++VPM+LVGNKCDL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 27  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
           EGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL     V + +A+  A
Sbjct: 87  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 146
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           EQ+N+ +++TSAKTR  VD  F+ L+REI+  KM
Sbjct: 147 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 31  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
           EGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL     V + +A+  A
Sbjct: 91  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 150
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           EQ+N+ +++TSAKTR  VD  F+ L+REI+  KM
Sbjct: 151 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 19  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
           EGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL     V + +A+  A
Sbjct: 79  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           EQ+N+ +++TSAKTR  VD  F+ L+REI+  KM
Sbjct: 139 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKL         KSALTIQ  Q  FVD+YDPTIEDSY K   ID + A+LD+LDTAG
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKL         KSALTIQ  Q  FV EYDPTIEDSY K   ID + A+LD+LDTAG
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG E+Y+A+RD Y R+G
Sbjct: 19  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
           EGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL     V + +A+  A
Sbjct: 79  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           EQ+N+ +++TSAKTR  VD  F+ L+REI+  KM
Sbjct: 139 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKL         KSALTIQ  Q  FV +YDPTIEDSY K   ID + A+LD+LDTAG
Sbjct: 11  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 70
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 71  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 130
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 131 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           +KL         KSALTIQ IQ++FV +YDPTIEDSY K   +DG  A LDILDTAGQEE
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69
Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
           + AMR+QYMR G GFLLVFA+N  +SF ++G    QI RVKD ++ P+VLVGNK DL S 
Sbjct: 70  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V  ++A       ++ + + SAK R+ VD+AF  LVR ++K
Sbjct: 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 17  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 76
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
           EGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL     V + +A+  A
Sbjct: 77  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 136
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
           +Q+N+ +++TSAKTR  VD  F+ L+REI+
Sbjct: 137 DQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG E+Y+A+RD Y R+G
Sbjct: 20  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 79
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-VPMVLVGNKCDLST-WAVDMNQAQEL 133
           EGFLLVF++   +SF     +REQI RVK  E+ +P+++VGNK DL     V + +A+  
Sbjct: 80  EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
           AE++ + +++TSAKTR  VD  F+ L+REI+  KM   K
Sbjct: 140 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENK 178

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG E+Y+A+RD Y R+G
Sbjct: 16  KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 75
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-VPMVLVGNKCDLST-WAVDMNQAQEL 133
           EGFLLVF++   +SF     +REQI RVK  E+ +P+++VGNK DL     V + +A+  
Sbjct: 76  EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 135
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
           AE++ + +++TSAKTR  VD  F+ L+REI+  KM   K
Sbjct: 136 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENK 174

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 118/164 (71%), Gaps = 1/164 (0%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYK+         KSALT+Q +   F+++YDPTIED YRK++ +D   ++L+ILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E++++MRD Y++ G+GF+LV+++ + +SF+DI   R+QI RVK  E+VP++LVGNK DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
            S   V  ++ + LAE++  PF++TSAK++  VD+ F  +VR++
Sbjct: 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 2   AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           AE KL         KSAL ++ +   F+ EYDPT+E +YR Q  ID E   ++ILDTAGQ
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
           E+ +  R+ +MR GEGF+LV+ +    SFE++   +  +  +K  + V ++LVGNK DL 
Sbjct: 87  ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMG-VDDAFYTLVREIKKDKMLR 170
            +  V   + ++LA +    F + SA T  G + + FY L RE+++ +M++
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 8/174 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KS+L ++ ++  F D Y PTIED+YR+ +  D     L I DT G  ++ AM+   +  G
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             F+LVF+V S +S E++G   + I ++K + E++P++LVGNKCD +   VD  +AQ +A
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA 140
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVR-EIKKDKMLR------GKEKKKRGISG 181
           +++   F++TSAK    V + F  L+  E +++  L       GK+K+   + G
Sbjct: 141 QEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KS+LTIQ ++  FVD YDPTIE+++ K + ++G+   L ++DTAGQ+EYS     Y    
Sbjct: 19  KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
            G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL     +   + + LA
Sbjct: 79  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           E +N  F+++SAK      D F  ++ E +K
Sbjct: 139 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KS+LTIQ ++  FVD YDPTIE+++ K + ++G+   L ++DTAGQ+EYS     Y    
Sbjct: 19  KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
            G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL     +   + + LA
Sbjct: 79  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           E +N  F+++SAK      D F  ++ E +K
Sbjct: 139 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KS+LTIQ ++  FVD YDPTIE+++ K + ++G+   L ++DTAGQ+EYS     Y    
Sbjct: 14  KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 73
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
            G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL     +   + + LA
Sbjct: 74  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 133
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           E +N  F+++SAK      D F  ++ E +K
Sbjct: 134 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 164

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KS+LTIQ ++  FVD  DPTIE+++ K + ++G+   L ++DTAGQ+EYS     Y    
Sbjct: 17  KSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 76
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
            G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL     +   + + LA
Sbjct: 77  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           E +N  F+++SAK      D F  ++ E +K
Sbjct: 137 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 3   EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y++         KS+L ++ ++  F + Y PT+ED+YR+ +  D     L I DT G  
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
           ++ AM+   +  G  F+LV+++ S +S E++    EQI  +K D E +P++LVGNKCD S
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 122 -TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
            +  V  ++A+ LA  +   F++TSAK    V + F  L+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 2   AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAG 60
           A +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 123
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +T   VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE +  +   Y R 
Sbjct: 12  KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 71
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
             G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T   VD   A+E 
Sbjct: 72  AHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF 130
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 131 ADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 144
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 145 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 125
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 152
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T   EIKK
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         K+ L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K++L  Q ++  F + YDPT+E++Y K V +  +   L ++DTAGQ+EYS +   ++   
Sbjct: 37  KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
            G++LV++V S+ SF+ I S  +++        VP+VLVGNK DLS    V   + ++LA
Sbjct: 97  HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA 156
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
           E +   F+++SA+        F  +++EI + +   G+E++
Sbjct: 157 ESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R   +E V  +LVG KCDL+T
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGIKCDLTT 127
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 128 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +S+ ++  + ++I R   +E V  +LVGNK DL+T
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ AF T+  EIKK
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +S+ ++  + ++I R   +E V  +LVGNK DL+T
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ AF T+  EIKK
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + D Y  TI   ++ + + ++ +T  L I DTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            +  +   Y R   G ++V+ V    SF+++  + ++I R    E V  +LVGNKCDL S
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGNKCDLVS 128
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V  ++ +ELA+   I FI+TSAK    V+ AF+T+  EIKK
Sbjct: 129 KRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKK 172

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            +  +   Y R   G ++V+ V   +SF  +  + ++I R      V  +LVGNKCDL  
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V+ + A+E A+   +PF++TSA     V+DAF T+ R+IK+
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            +  +   Y R   G ++V+ V   +SF  +  + ++I R      V  +LVGNKCDL  
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V+ + A+E A+   +PF++TSA     V+DAF T+ R+IK+
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            +  +   Y R   G ++V+ V   +SF  +  + ++I R      V  +LVGNKCDL  
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 140
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V+ + A+E A+   +PF++TSA     V+DAF T+ R+IK+
Sbjct: 141 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 37  EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
           ED+Y + +++DGE+A   LLD+ +  G+ E+  + D  M+ G+ +L+V+++    SFE  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA 99
Query: 94  GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
              R Q++R +  E++P++LVGNK DL     V +++ +  A  F+  FI+TSA  +  V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIKKDKMLR--GKEKKKRGISGNKLKQC 187
            + F  +VR+++    LR   KEK +R ++  K K+ 
Sbjct: 160 KELFEGIVRQVR----LRRDSKEKNERRLAYQKRKES 192

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 37  EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
           ED+Y + +++DGE+A   LLD+ +  G+ E+  + D  M+ G+ +L+V+++    SFE  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 94  GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
              R Q++R +  E++P++LVGNK DL     V +++ +  A  F+  FI+TSA  +  V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIKKDKMLR--GKEKKKRGISGNKLKQC 187
            + F  +VR+++    LR   KEK +R ++  K K+ 
Sbjct: 160 KELFEGIVRQVR----LRRDSKEKNERRLAYQKRKES 192

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           YK+         KS+  ++L +N F +    T+   ++ K +++DGE  +L + DTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA--EEVPMVLVGNKCDL 120
            + ++   Y R  +G LL++ V   KSF +I   RE +  ++DA  E VP++LVGNK D+
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI---REWVDMIEDAAHETVPIMLVGNKADI 145
Query: 121 STWAVDMNQ-------AQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              A    Q        ++LA  +   F +TSAK    + +A   L RE+KK
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 86/144 (59%), Gaps = 10/144 (6%)
Query: 37  EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
           ED+Y + +++DGE+A   LLD+ +  G+ E+  + D  M+ G+ +L+V+++    SFE  
Sbjct: 73  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 130
Query: 94  GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
              R Q++R +  E++P++LVGNK DL     V +++ +  A  F+  FI+TSA  +  V
Sbjct: 131 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190
Query: 153 DDAFYTLVREIKKDKMLRGKEKKK 176
            + F  +VR+++    LR   K+K
Sbjct: 191 KELFEGIVRQVR----LRRDSKEK 210

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++ +++ F   +  TI   ++ K V I+G+   L + DTAGQE +  +   Y R 
Sbjct: 33  KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             G +LV+ V   ++F +I  + + +    + +E  ++LVGNK D+ T  V  +Q + LA
Sbjct: 93  AMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 151
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           ++  IPFI++SAK    V++ F+TL + I++
Sbjct: 152 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++ +++ F   +  TI   ++ K V I+G+   L I DTAGQE +  +   Y R 
Sbjct: 16  KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             G +LV+ +   ++F +I  + + +    + +E  ++LVGNK D+ T  V  +Q + LA
Sbjct: 76  AMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           ++  IPFI++SAK    V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 37  EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
           ED+Y + +++DGE+A   LLD+ +  G+ E+  + D  M+ G+ +L+V+++    SFE  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 94  GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
              R Q++R +  E++P++LVGNK DL     V +++ +  A  F+  FI+TSA  +  V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIK 164
            + F  +VR+++
Sbjct: 160 KELFEGIVRQVR 171

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++ +++ F   +  TI   ++ K V I+G+   L + DTAGQE +  +   Y R 
Sbjct: 20  KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 79
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             G +LV+ V   ++F +I  + + +    + +E  ++LVGNK D+ T  V  +Q + LA
Sbjct: 80  AMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           ++  IPFI++SAK    V++ F+TL + I++
Sbjct: 139 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++ +++ F   +  TI   ++ K V I+G+   L I DTAGQE +  +   Y R 
Sbjct: 16  KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             G +LV+ +   ++F +I  + + +    + +E  ++LVGNK D  T  V  +Q + LA
Sbjct: 76  AXGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDXETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           ++  IPFI++SAK    V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++ +++ F   +  TI   ++ K V I+G+   L + DTAGQE +  +   Y R 
Sbjct: 16  KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 75
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
             G +LV+ V   ++F +I  + + +    + +E  ++LVGNK D  T  V  +Q + LA
Sbjct: 76  AXGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDXETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           ++  IPFI++SAK    V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L  Q +   F ++Y  TI  D   K+V++D     + I DTAGQE + ++   + R 
Sbjct: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  +LVF V +  +F+ + S+R++       +D E  P V++GNK DL    V   +AQ
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVR 161
                + NIP+ +TSAK  + V+ AF T+ R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEY-SAMRDQYMR 73
           K+ LT +     F D  + TI   +R++ V IDGE   + + DTAGQE +  +M   Y R
Sbjct: 33  KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92
Query: 74  TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQE 132
                + V+ + +M SF  + ++ E+ K+   A ++P +LVGNKCDL S   V  + AQ+
Sbjct: 93  NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 152
Query: 133 LAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIK 164
            A+  ++P  +TSAK       V+  F TL  ++K
Sbjct: 153 FADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L  Q +   F ++Y  TI  D   K+V++D     + I DTAGQE + ++   + R 
Sbjct: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  +LVF V +  +F+ + S+R++       +D E  P V++GNK DL    V   +AQ
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                + NIP+ +TSAK  + V+ AF T+ R   K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ + I    N F  +Y PT+ D++   V +DG+   L + DTAGQE+YS +R    R  
Sbjct: 22  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL---------STWAV 125
           + F+L F++ S  S+E++   +  +++R   A  VP+VLVG K DL          T  +
Sbjct: 82  DIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVI 139
Query: 126 DMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI-----KKDKMLRGKEKKKRGI 179
              Q +EL +Q     +I+ S+KT+  V   F T ++ +     +K+   R K  ++ G 
Sbjct: 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGC 199
Query: 180 S 180
           S
Sbjct: 200 S 200

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         K+ +  +  ++ F   +  TI   ++ + + +DG+   L I DTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
            +  +   Y R   G +LV+ + + KSF++I ++   I+    A+   M+L GNKCD++ 
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVND 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
              V   + ++LA  + I F++TSAK  + V++AF+TL R+IK
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         K+ +  +  ++ F   +  TI   ++ + + +DG+   L I DTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
            +  +   Y R   G +LV+ + + KSF++I ++   I+    A+   M+L GNKCD++ 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVND 125
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
              V   + ++LA  + I F++TSAK  + V++AF+TL R+IK
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L  Q +   F ++Y  TI  D   K+V++D     + I DTAGQE + ++   + R 
Sbjct: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  +LVF V +  +F+ + S+R++       +D E  P V++GNK D     V   +AQ
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                + NIP+ +TSAK  + V+ AF T+ R   K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 123
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L  Q +   F ++Y  TI  D   K+V++D     + I DTAG E + ++   + R 
Sbjct: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  +LVF V +  +F+ + S+R++       +D E  P V++GNK DL    V   +AQ
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                + NIP+ +TSAK  + V+ AF T+ R   K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL-----------STW 123
           + F+L F++ S  S+E++   ++ I  ++  A  VP++LVG K DL              
Sbjct: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
Query: 124 AVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAF 156
            +  NQ +EL +    P +I+ S+KT+  V   F
Sbjct: 137 PITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 19  KTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL-----------STW 123
           + FLL F++ S  S+E+I  +++ +  +K  A  +P+VLVG K DL              
Sbjct: 79  DVFLLAFSLISKASYENI--HKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAA 136
Query: 124 AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
           ++   Q +EL +    + +++ S+KT+  V   F T +R
Sbjct: 137 SITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEY-SAMRDQYMR 73
           K+ LT +     F D  + TI   +R++ V IDGE   + + DTAGQE +  +M   Y R
Sbjct: 42  KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 101
Query: 74  TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQE 132
                + V+   +  SF  + ++ E+ K+   A ++P +LVGNKCDL S   V  + AQ+
Sbjct: 102 NVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 161
Query: 133 LAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIK 164
            A+  + P  +TSAK       V+  F TL  ++K
Sbjct: 162 FADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L  + + N F  +   TI   +  + + +DG    L I DTAGQE + ++R  + R 
Sbjct: 20  KSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRG 79
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  LL F+V+  +SFE++G+++++      VKD E  P V++GNK D     V   +AQ
Sbjct: 80  ADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQ 139
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               E  + P+++TSAK    V  AF   VR++
Sbjct: 140 TWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGE-TALLDILDTAGQEEYSAMRDQYMR 73
           K++L  + + + +  +Y  TI  D   K+V +DG+  A + + DTAGQE + ++   + R
Sbjct: 21  KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80
Query: 74  TGEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDL--STWAVDMN 128
             +  +LV+ V +  SFE+I S+R++      V   E  P V++GNK D   S   V   
Sbjct: 81  GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140
Query: 129 QAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVR 161
            AQELA+   +IP   TSAK  + VD AF  + R
Sbjct: 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI+ ++  Q V +D  T   +I DTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + +  +F    ++ ++++R + +  + + L GNK D
Sbjct: 63  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 121
Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           L S  AV+  +AQ  A+  ++ F++TSAKT M V++ F  + +++
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 123
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F +TSAKT   V++ F  + +++ K+
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 6   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTA 65
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + ++F    ++ ++++R + +  + + L GNK D
Sbjct: 66  GQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIALAGNKAD 124
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           L+    V+  +AQ  A+  ++ F++TSAKT M V+D F  + +++ K +
Sbjct: 125 LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 173

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E Y ++   Y R  +  ++V+ + + +SF    ++ ++++R + +  + + L GNK D
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 121
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K
Sbjct: 122 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL---------STWAV 125
           + F+L F++ S  S+E++   ++ I  +K  A  VP+VLVG K DL            AV
Sbjct: 81  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAV 138
Query: 126 DMN--QAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVREI 163
            +   Q +EL +    P +I+ S+K++  V   F   +R +
Sbjct: 139 PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + +  +F    ++ ++++R + +  + + L GNK D
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 119
Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           L S  AV+  +AQ  A+  ++ F++TSAKT M V++ F  + +++
Sbjct: 120 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L ++   + F  E   TI   ++ K + +DG  A L I DTAGQE +  +   Y R 
Sbjct: 28  KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
            +G +LV+ V    +F  + ++  +++      ++   LVGNK D     VD N+  + A
Sbjct: 88  AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFA 147
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
            + +  FI+ SAKT  GV  AF  LV +I +   L   E +  G S
Sbjct: 148 RKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 16  KSALTIQLIQNHFV-DEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMR 73
           K+ L ++     F+   +  T+   +R +V+ +DG    L + DTAGQE + ++   Y R
Sbjct: 23  KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR 82
Query: 74  TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQE 132
                LL++ V +  SF++I ++  +I       +V ++L+GNK D +    V     ++
Sbjct: 83  DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK 141
Query: 133 LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           LA+++ +PF++TSAKT + VD AF  + +E+K+  M
Sbjct: 142 LAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L  + + N F  +   TI   +  K + +DG    + I DTAGQE + ++R  + R 
Sbjct: 20  KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 79
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  LL F+V+  +SF+++ +++++      VK+ E  P V++GNK D+S   V   +AQ
Sbjct: 80  SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 139
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               +  + P+ +TSAK    V  AF   VR +
Sbjct: 140 AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L  + + N F  +   TI   +  K + +DG    + I DTAGQE + ++R  + R 
Sbjct: 22  KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 81
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  LL F+V+  +SF+++ +++++      VK+ E  P V++GNK D+S   V   +AQ
Sbjct: 82  SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 141
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               +  + P+ +TSAK    V  AF   VR +
Sbjct: 142 AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAGQE Y A+   Y R 
Sbjct: 33  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 92
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  V M LVGNK DL    AV  ++A+  
Sbjct: 93  AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 151
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           AE+  + FI+TSA     V+ AF T++ EI +
Sbjct: 152 AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L  + + N F  +   TI   +  K + +DG    + I DTAGQE + ++R  + R 
Sbjct: 24  KSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 83
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
            +  LL F+V+  +SF+++ +++++      VK+ E  P V++GNK D+    V   +AQ
Sbjct: 84  SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQ 143
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               +  + P+ +TSAK    V  AF   VR I
Sbjct: 144 AWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L +Q     F   +D TI   +  ++V IDG+   L I DTAGQE + ++   Y R 
Sbjct: 34  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             G LLV+ +   ++F  + S+ E  ++   +  V M L+GNK DL S   V   + +  
Sbjct: 94  AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDLESRRDVKREEGEAF 152
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           A +  + F++TSAKT   V++AF    +EI +
Sbjct: 153 AREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
           K+    +   N F  ++  T+   +R K+VV D + A           L + DTAG E +
Sbjct: 24  KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL F + S +SF ++ ++  Q++     E   +VL+GNK DL    
Sbjct: 84  RSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V+  QA+ELAE++ IP+ +TSA T   V+ +  TL+  I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAGQE Y A+   Y R 
Sbjct: 42  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 101
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  V M LVGNK DL    AV  ++A+  
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 160
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE+  + FI+TSA     V+ AF T++ EI
Sbjct: 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 12/162 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI------DGETA-----LLDILDTAGQEEY 64
           K+    +   N F  ++  T+   +R++ V+      +G +       L + DTAGQE +
Sbjct: 38  KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +VL+GNK DL    
Sbjct: 98  RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 157
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V+  QA+ELA+++ IP+ +TSA T   V+ A  TL+  I K
Sbjct: 158 EVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
           K+    +   N F  ++  T+   +R K+VV D + A           L + DTAG E +
Sbjct: 24  KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL F + S +SF ++ ++  Q++     E   +VL+GNK DL    
Sbjct: 84  RSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V+  QA+ELAE++ IP+ +TSA T   V+ +  TL+  I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRT 74
           KS++  + +Q+HF     PTI  S+  + V  G E     I DTAGQE + ++   Y R 
Sbjct: 36  KSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQEL 133
               ++V+ +    SF  +  + +++K     E + M + GNKCDLS    V +  A+E 
Sbjct: 96  SAAAVIVYDITKQDSFYTLKKWVKELKE-HGPENIVMAIAGNKCDLSDIREVPLKDAKEY 154
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE      ++TSAK  + +++ F  + R+I
Sbjct: 155 AESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS++  +  +  F  +Y  TI  D   +Q+ ++ E   L + DTAGQEE+ A+   Y R 
Sbjct: 18  KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG 77
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LSTWAVDMNQAQEL 133
            +  +LVF+    +SFE I S+RE++  V +  ++P  LV NK D L    +   +A+ L
Sbjct: 78  AQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL 135
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTL 159
           A++  + F +TS K  + V + F  L
Sbjct: 136 AKRLKLRFYRTSVKEDLNVSEVFKYL 161

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
           K+    +   N F  ++  T+   +R K+VV D + A           L + DTAG E +
Sbjct: 24  KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +VL+GNK DL    
Sbjct: 84  RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V+  QA+ELAE++ IP+ +TSA T   V+ +  TL+  I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KL         KS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E Y ++   Y R  +  ++V+ + +  +F    ++ ++++R + +  + + L GNK D
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 121
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           L++  AV+  +AQ  A+  ++ F++TSAKT M V++ F  + +++
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAGQE Y  +   Y R 
Sbjct: 18  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  V M LVGNK DL    AV  ++A+  
Sbjct: 78  AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           AE+ N+ FI+TSA     V++AF  ++ EI +
Sbjct: 137 AEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
           K+    +   N F  ++  T+   +R K+VV D + A           L + DTAG E +
Sbjct: 24  KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +VL+GNK DL    
Sbjct: 84  RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            V+  QA+ELAE++ IP+ +TSA T   V+ +  TL+  I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L +Q     F   +D TI   +  + + IDG+   L I DTAGQE + ++   Y R 
Sbjct: 23  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG 82
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             G LLV+ +    +F  + ++ E  ++  ++  V M L+GNK DL S   V   + +  
Sbjct: 83  AAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLESRREVKKEEGEAF 141
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A +  + F++TSAKT   V++AF    +EI
Sbjct: 142 AREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS+L ++ +++ FV+  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 25  KSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 84
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LSTWAVDMNQAQEL 133
               ++VF V +  SFE    + ++++   +   V M L GNK D L    V    AQ  
Sbjct: 85  AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVTAEDAQTY 143
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           A++  + F++TSAKT   V + FY + R + +
Sbjct: 144 AQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39  SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
           +Y + +V+DGE A L + D   Q+    +    M  G+ +++V++V    SFE     R 
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 99  QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
           Q++R +  ++VP++LVGNK DL  +  V +++ +  A  F+  FI+TSA     V   F 
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 158 TLVREIK 164
            +VR+I+
Sbjct: 162 GVVRQIR 168

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39  SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
           +Y + +V+DGE A L + D   Q+    +    M  G+ +++V++V    SFE     R 
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 99  QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
           Q++R +  ++VP++LVGNK DL  +  V +++ +  A  F+  FI+TSA     V   F 
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Query: 158 TLVREIK 164
            +VR+I+
Sbjct: 157 GVVRQIR 163

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39  SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
           +Y + +V+DGE A L + D   Q+    +    M  G+ +++V++V    SFE     R 
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 99  QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
           Q++R +  ++VP++LVGNK DL  +  V +++ +  A  F+  FI+TSA     V   F 
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 158 TLVREIK 164
            +VR+I+
Sbjct: 162 GVVRQIR 168

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAG E Y A+   Y R 
Sbjct: 21  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  V M LVGNK DL    AV  ++A+  
Sbjct: 81  AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           AE+  + FI+TSA     V+ AF T++ EI +
Sbjct: 140 AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L ++  +N F D++  T++ S+  K++ I G+   L I DTAGQE + A+   Y R 
Sbjct: 19  KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
             G +LV+ +    SF+ + ++ ++++++    E+ + +VGNK DL     V + +A+  
Sbjct: 79  SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE        TSAK   G+++ F  L + +
Sbjct: 138 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAG E Y A+   Y R 
Sbjct: 42  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  V M LVGNK DL    AV  ++A+  
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 160
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE+  + FI+TSA     V+ AF T++ EI
Sbjct: 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L ++  +N F D++  T++ S+  K++ I G+   L I DTAGQE + A+   Y R 
Sbjct: 33  KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 92
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
             G +LV+ +    SF+ + ++ ++++++    E+ + +VGNK DL     V + +A+  
Sbjct: 93  SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 151
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE        TSAK   G+++ F  L + +
Sbjct: 152 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
               T+   +  A+E+     + +++ SA T+ G+   F   +R +     ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL         KS+L ++   N F   Y  TI   ++ + V I+GE   L I DTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC-DLS 121
            +  +   Y R   G ++V+ V S +SF ++  +  +I   ++ ++V  +LVGNK  D  
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN--QNCDDVCRILVGNKNDDPE 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT---LVREIKKDKMLR 170
              V+   A + A Q  I   +TSAK  + V++ F     LV   KKD + +
Sbjct: 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAG E Y A+   Y R 
Sbjct: 18  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 77
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  + + LVGNK DL    AV  ++A+  
Sbjct: 78  AVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIXLVGNKSDLRHLRAVPTDEARAF 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE+  + FI+TSA     V+ AF T++ EI
Sbjct: 137 AEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L ++  +N F D++  T+  S+  K++ I G+   L I DTAGQE + A+   Y R 
Sbjct: 19  KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
             G +LV+ +    SF+ + ++ ++++++    E+ + +VGNK DL     V + +A+  
Sbjct: 79  SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE        TSAK   G+++ F  L + +
Sbjct: 138 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  E   TI   +  + + +DG+T    I DTAG E Y A+   Y R 
Sbjct: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 83
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G LLV+ +    ++E++  + ++++   D+  + + LVGNK DL    AV  ++A+  
Sbjct: 84  AVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIXLVGNKSDLRHLRAVPTDEARAF 142
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           AE+  + FI+TSA     V+ AF T++ EI
Sbjct: 143 AEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
               T+   +  A+E+     + +++ SA T+ G+   F   +R + K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS++ ++ + N F +  +PTI  ++  Q V I+  T   +I DTAGQE ++++   Y R 
Sbjct: 16  KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL----STWAVDMNQA 130
            +  L+V+ V   +SF     + +++   + ++++ + LVGNK D         V   + 
Sbjct: 76  AQAALVVYDVTKPQSFIKARHWVKELHE-QASKDIIIALVGNKIDXLQEGGERKVAREEG 134
Query: 131 QELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           ++LAE+  + F +TSAKT   V+D F  +  +I
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 43  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+    ++ +++ SA T+ G+   F   +R +
Sbjct: 134 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 17  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 77  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+    ++ +++ SA T+ G+   F   +R +
Sbjct: 135 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 35  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 94
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 95  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 152
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 153 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 17  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 77  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+    ++ +++ SA T+ G+   F   +R +
Sbjct: 135 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 26  KTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 85
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 86  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 143
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 144 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 23  KNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 83  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 141 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K          KS L  Q I+N F  + + TI   +  +VV + G+T  L I DTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + S +++  + ++     R   +  + ++L GNK DL  
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD-ARTLASPNIVVILCGNKKDLDP 144
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   +A   A++  + F++TSA T   V++AF    R I
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQE 62
           +KL         K++   +   + F   +  T+   ++ + V   E  + L I DTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            Y  +   Y R   GF+L++ + + +SF  +  +  QIK     +   ++LVGNKCD+  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK-TYSWDNAQVILVGNKCDMEE 142
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
              V   + Q LAEQ    F + SAK  + V  AF  LV  I  DKM
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI-CDKM 188

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
               T+   +  A+E+     + +++ SA T+ G+   F   +R +     ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
               T+   +  A+E+     + +++ SA T+ G+   F   +R +     ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  Q  +  F+ +   TI   +  +++ + G+   L I DTAGQE + A+   Y R 
Sbjct: 28  KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQEL 133
             G L+V+ +    ++  + S+    + + +   V ++L+GNK DL     V   +A++ 
Sbjct: 88  AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQF 146
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           AE+  + F++ SAKT   V+DAF    ++I ++
Sbjct: 147 AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           MA Y++         K++L          D ++   ED Y + + +DGE   L ++DT  
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 61  QEEY--SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
            E+   S  ++  ++ G  +++V+++    SFE     R Q++R   A+ VP++LVGNK 
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           DL+    V + + +  A  F+  FI+TSA  +  V + F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L ++   + + + Y  TI   ++ + + +DG+T  L I DTAGQE +  +   Y R 
Sbjct: 11  KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 70
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
             G ++V+ V   +SF ++  + ++I R   +E V  +LVGNKCDL+T
Sbjct: 71  AHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 117

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37  EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
           ED+Y +++++D E   L + D   Q +    +RD  ++TG+ FL+VF+V   +SF  +  
Sbjct: 58  EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 96  YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
              +++  +   ++P++LVGNK DL+ +  V + + + LA   +   I+TSA       +
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177
Query: 155 AFYTLVREIK 164
            F   VR+I+
Sbjct: 178 LFEGAVRQIR 187

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL     D +  ++LA
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRD---DPSTIEKLA 130
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
           +    P    +A+           L R++K  K +      +RG+
Sbjct: 131 KNKQKPITPETAE----------KLARDLKAVKYVECSALTQRGL 165

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           +  L+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
               T+   +  A+E+     + +++ SA T+ G+   F   +R +     ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL     D +  ++LA
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRD---DPSTIEKLA 130
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
           +    P    +A+           L R++K  K +      +RG+
Sbjct: 131 KNKQKPITPETAE----------KLARDLKAVKYVECSALTQRGL 165

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQ---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR---EIKKDKMLRG 171
           +    P                 +++ SAKT+ GV + F    R   +++K+K  RG
Sbjct: 133 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRG 189

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            DI DTAGQE Y+++   Y R     ++VF +++  + +   ++  Q+K    +    ++
Sbjct: 95  FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI---SSNYIII 151
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           LV NK D + + VD+ + Q+ A+  N+ FI+TSAKT   + + FY L  EI K+
Sbjct: 152 LVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 17  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 76
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 77  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 134
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 135 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 78  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 135
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 136 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 19  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 78
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 79  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 137 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N    EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 43  KTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 55  ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
           I DTAGQE Y A+   Y R   G LLV+ +    SFE+I  + ++++   D+  + ++LV
Sbjct: 61  IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS-NIVILLV 119
Query: 115 GNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           GNK DL     ++ N A + A++  + FI+TSA     V+ AF+ L+ EI
Sbjct: 120 GNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 19  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 78
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 79  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 137 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSALT++ +   F+ EYDP +ED+Y  +  +D +   L ++DTA  +      ++Y+   
Sbjct: 34  KSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIK-RVKDAE-EVPMVLVGNKCDLSTW-AVDMNQAQE 132
             FL+V++V+S +SF+   SY E +    K+ +  +P +L+GNK D++ +  V   +   
Sbjct: 93  HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA 152
Query: 133 LAEQFNIPFIKTSAKTRM-GVDDAFYTLVREIKKD 166
           LA +F   F + SA      V   F+  VRE +++
Sbjct: 153 LAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K++L  +   + F +    T+   ++ K V + G+   L I DTAGQE ++++   Y R+
Sbjct: 39  KTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
            +G +LV+ +   ++F+D+  + + I +   +E+  ++LVGNK D  T   +   Q ++ 
Sbjct: 99  AKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKF 157
Query: 134 AEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
           A+Q   + F + SAK    VD+ F  LV +I K
Sbjct: 158 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 23  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 82
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 83  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 140
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 141 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++D +   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
           + FL+ F++ S  S+E++   +  +++        P++LVG K DL              
Sbjct: 76  DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
              +   Q   LA++ + + +++ SA T+ G+   F   +R +   +  R   ++KR  S
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR---QQKRACS 190

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 78  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 135
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 136 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 19  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 78
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 79  DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 137 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 26  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 85
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 86  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 143
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 144 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 43  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 20  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 79
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 80  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 138 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-----------DGETALLDILDTAGQEEY 64
           K+++  Q     F  ++  T+   +R++ V+            G+   L + DTAG E +
Sbjct: 24  KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF 83
Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
            ++   + R   GFLL+F + + +SF ++ ++  Q++    +E   +VL GNK DL    
Sbjct: 84  RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           AV   +A+ELAE++ IP+ +TSA     +  A   L+  I K +M R  +K
Sbjct: 144 AVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK-RMERSVDK 193

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 20  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 79
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           +  L+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 80  DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 138 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           +  L+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 76  DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 23  KNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 82
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 83  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 140
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 141 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 20  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 189

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           +  L+ F++ S  SFE++   +  +++        P++LVG K DL              
Sbjct: 78  DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 136 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  Q  +  F+ +   TI   +  +++ + G+   L I DTAGQ  + A+   Y R 
Sbjct: 43  KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRG 102
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQEL 133
             G L+V+ +    ++  + S+    + + +   V ++L+GNK DL     V   +A++ 
Sbjct: 103 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQF 161
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           AE+  + F++ SAKT   V+DAF    ++I ++
Sbjct: 162 AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 194

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 21  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 80
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 135
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 190

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++D +   L + DTAGQE+Y  +R       
Sbjct: 22  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 81
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
           + FL+ F++ S  S+E++   +  +++        P++LVG K DL              
Sbjct: 82  DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
              +   Q   LA++ + + +++ SA T+ G+   F   +R +
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L +    + F +EY PT+ D Y   V + G+  LL + DTAGQE+Y  +R       
Sbjct: 31  KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 90
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL----STWA------ 124
           + FL+ F+V +  SF+++    E +  +K+ A  VP +L+G + DL     T A      
Sbjct: 91  DVFLICFSVVNPASFQNVK--EEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK 148
Query: 125 ---VDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              + + Q Q+LA++     +++ SA T+ G+   F
Sbjct: 149 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37  EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
           ED+Y +++++D E   L + D   Q +    ++D  ++TG+ FL+VF+V   +SF  +  
Sbjct: 37  EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 96  YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
              +++  +   ++P++LVGNK DL+ +  V + + + LA   +   I+TSA       +
Sbjct: 97  TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156
Query: 155 AFYTLVREIK 164
            F   VR+I+
Sbjct: 157 LFEGAVRQIR 166

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  Q I+  F D+ + TI   +  +++ + G+   L I DTAGQE + ++   Y R 
Sbjct: 23  KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             G LLV+ + S +++  + ++     R+  ++ + ++L GNK DL +   V   +A   
Sbjct: 83  AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A++  + F++TSA T   V++AF    R+I
Sbjct: 142 AQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 20  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 189

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++D +   L + DTAGQE+Y  +R       
Sbjct: 23  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
           + FL+ F++ S  S+E++   +  +++        P++LVG K DL              
Sbjct: 83  DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
              +   Q   LA++ + + +++ SA T+ G+   F   +R +
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37  EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
           ED+Y +++++D E   L + D   Q +    ++D  ++TG+ FL+VF+V   +SF  +  
Sbjct: 47  EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 106
Query: 96  YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
              +++  +   ++P++LVGNK DL+ +  V + + + LA   +   I+TSA       +
Sbjct: 107 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 166
Query: 155 AFYTLVREIK 164
            F   VR+I+
Sbjct: 167 LFEGAVRQIR 176

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  Q I+  F D+ + TI   +  +++ + G+   L I DTAGQE + ++   Y R 
Sbjct: 24  KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 83
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             G LLV+ + S +++  + ++     R+  ++ + ++L GNK DL +   V   +A   
Sbjct: 84  AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 142
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A++  + F++TSA T   V++AF    R+I
Sbjct: 143 AQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY P + D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           +    P                 +++ SAKT+ GV + F    R   + +  RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 19  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 133
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F   Y PT+ ++Y   + +DG+   L + DTAGQE+Y   R       
Sbjct: 18  KTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D + A+ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTARELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 19  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 133
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 22  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 81
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 82  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 136
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 137 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 20  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAG E+Y  +R       
Sbjct: 20  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQT 79
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 80  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 138 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N    EY PT+ D+Y   V+I GE   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  +  +N F  +   TI   +  + + I+G+     I DTAGQE Y A+   Y R 
Sbjct: 26  KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG 85
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
             G L+V+ ++   S+E+   +  +++   D + V + L+GNK DL+   AV   +++  
Sbjct: 86  AVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAHLRAVPTEESKTF 144
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A++  + F +TSA     VD AF  L+  I
Sbjct: 145 AQENQLLFTETSALNSENVDKAFEELINTI 174

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 38  KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 98  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQ---DEHTRRELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAG E+Y  +R       
Sbjct: 16  KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
           + FL+ F+V S  SFE++   +  +I       + P +LVG + DL    ST        
Sbjct: 76  DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
              +    A++LA     + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 38  KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 98  DVILMCFSIDSPDSLENIPEKWTPEVKHF--XPNVPIILVGNKKDLRQ---DEHTRRELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 2   AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAG 60
            ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK DL
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVGNKTDL 119
Query: 121 S-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           +    + + + ++ A++ ++ FI+TSAKT   V   F
Sbjct: 120 ADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 42  KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK 101
           K + I G+   L I DTAGQE +  +   Y R+  G +L + +    SF  +  + E ++
Sbjct: 69  KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128
Query: 102 RVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159
           +   +  V + L+GNK DLS    V + +AQ LAE ++I   I+TSAK    V++AF  +
Sbjct: 129 KYAGSNIVQL-LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
Query: 160 VREI 163
             E+
Sbjct: 188 ATEL 191

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 38  KTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+V+S  S E+I    + +  VK     VP++LV NK DL +   D +   ELA
Sbjct: 98  DVILMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPIILVANKKDLRS---DEHVRTELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
                P                 +++ SAKT+ GV + F T  R
Sbjct: 153 RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SF  +   +  +++        P++LVG K DL              
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK D
Sbjct: 64  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           L+    V + + +  A++ N+ FI+TSAK    V   F
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SF  +   +  +++        P++LVG K DL              
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 130
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG E+Y  +R       
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
           + FL+ F++ S  SF  +   +  +++        P++LVG K DL              
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
               T+   +  A+E+     + +++ SA T+ G+   F   +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 16  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 130
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAGQE+Y  +R       
Sbjct: 18  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQE 62
           +KL         K++   +   + F   +  T+   ++ + V   +  + L I DTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
            Y  +   Y R   GFLL++ + + +SF  +  +  QIK     +   ++LVGNKCDL  
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK-TYSWDNAQVILVGNKCDLED 141
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
              V     + LA+     F + SAK  + V   F  LV
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE + ++   Y+R     ++V+ + +  SF     + + + R +   +V ++LVGNK D
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNKTD 130
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           LS    V   + +  A++ N+ FI+TSAK    V   F
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS L  Q I+  F D+ + TI   +  +++ + G+   L I DTAG E + ++   Y R 
Sbjct: 21  KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRG 80
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             G LLV+ + S +++  + ++     R+  ++ + ++L GNK DL +   V   +A   
Sbjct: 81  AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A++  + F++TSA T   V++AF    R+I
Sbjct: 140 AQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 3   EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQ 61
           ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK DL+
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLA 119
Query: 122 -TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
               V + + +  A++ N+ FI+TSAK    V   F
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD-QYMRT 74
           K+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y  +R   Y +T
Sbjct: 18  KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 75  -GEG-----------------FLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVG 115
            GE                  FL+ F++ S  SFE++   +  +++        P++LVG
Sbjct: 78  VGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVG 135
Query: 116 NKCDLS-----------------TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158
            K DL                  T+   +  A+E+     + +++ SA T+ G+   F  
Sbjct: 136 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDE 192
Query: 159 LVREI 163
            +R +
Sbjct: 193 AIRAV 197

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
           K++   +   + F   +  T+   ++ + +   +  + L I DTAGQE Y  +   Y R 
Sbjct: 18  KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRG 77
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
             GF+L++ + + +SF  +  +  QIK     +   ++LVGNKCD+     V   + ++L
Sbjct: 78  AMGFILMYDITNEESFNAVQDWSTQIK-TYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLV 160
           A+     F + SAK  + V   F  LV
Sbjct: 137 ADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS++  + +++ F    +PTI  S+  K V    E     I DTAGQE + A+   Y R 
Sbjct: 18  KSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRG 77
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-AQEL 133
               ++V+ +   ++F  + ++  ++++      + + + GNKCDL+     M + A++ 
Sbjct: 78  SAAAIIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDY 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A+  +  F++TSAK  + +++ F  + R I
Sbjct: 137 ADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
           K+ L  +  +N F  +   TI   +  + V+ G  A+   I DTAG E Y A+   Y R 
Sbjct: 23  KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 82
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV--LVGNKCDLS-TWAVDMNQAQ 131
             G LLVF +   +++  +  +   +K + D  E  +V  LVGNK DLS    V   +A+
Sbjct: 83  AVGALLVFDLTKHQTYAVVERW---LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 139
Query: 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
             AE   + F++TSA     V+ AF T+++EI
Sbjct: 140 MFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
           K+ L  +  +N F  +   TI   +  + V+ G  A+   I DTAG E Y A+   Y R 
Sbjct: 38  KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV--LVGNKCDLS-TWAVDMNQAQ 131
             G LLVF +   +++  +  +   +K + D  E  +V  LVGNK DLS    V   +A+
Sbjct: 98  AVGALLVFDLTKHQTYAVVERW---LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 154
Query: 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
             AE   + F++TSA     V+ AF T+++EI
Sbjct: 155 MFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K++L +    N +  EY PT  D++   V +DG    L + DTAGQ+E+  +R       
Sbjct: 33  KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDL 120
           + FLL F+V S  SF+++    + +  ++    + P++LVG + DL
Sbjct: 93  DIFLLCFSVVSPSSFQNVS--EKWVPEIRCHCPKAPIILVGTQSDL 136

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK D
Sbjct: 71  GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 129
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           L+    V + + +  A++ N+ FI+TSAK    V   F
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAG E+Y  +R       
Sbjct: 21  KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F+++S  S E+I   +  ++K       VP++LVGNK DL     D +  +ELA
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 135
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
           +    P                 +++ SAKT+ GV + F    R
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK D
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           L+    V + + +  A++ N+ FI+TSAK    V   F
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + ++KL         K++L  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E + ++   Y+R     ++V+ + ++ SF+    + + + R +   +V ++LVGNK D
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 132
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
           L+    V + + +  A++ N+ FI+TSAK    V   F
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           K+ L  +  Q  F      TI  D   K V I+GE   L I DTAGQE + ++   Y R+
Sbjct: 39  KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQEL 133
               +L + +   +SF  +  +  +I++   + +V  VLVGNK DL+    V   +A+E 
Sbjct: 99  ANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF 157
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTL 159
           +E  ++ +++TSAK    V+  F  L
Sbjct: 158 SEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
           KS++  + +++ F    +PTI  S+  K V    E     I DTAG E + A+   Y R 
Sbjct: 19  KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG 78
Query: 75  GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-AQEL 133
               ++V+ +   ++F  + ++  ++++      + + + GNKCDL+     M + A++ 
Sbjct: 79  SAAAIIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           A+  +  F++TSAK  + +++ F  + R I
Sbjct: 138 ADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
           L I DTAG E Y  +   Y R   GF+L + + + +SF  +  +  QIK     +   ++
Sbjct: 59  LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDNAQVL 117
Query: 113 LVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
           LVGNKCD      V   + ++LA+     F + SAK  + V   F  LV
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 2   AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAG 60
            ++KL         K+    + +   F  +Y PT+       V       +  ++ DTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+VL GNK D+
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 126
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
               V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 127 KDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 3   EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQ 61
           +YKL         K+++  +   + F + Y  TI  D   K + +D     L + DTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--KRVKDAEEVPMVLVGNKCD 119
           E + ++   Y+R     ++V+ + + +SFE+   + + I  +R KD   V + LVGNK D
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD---VIIALVGNKTD 117
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAK 147
           L     V   +  + A+++N  F +TSAK
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAK 146

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L +   +      Y PT+ +++   +    E  +L + DTAGQEEY  +R       
Sbjct: 36  KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-- 132
           +  LL FAVN+  SF++I + +  +IK   D  +   VLVG K DL     D    QE  
Sbjct: 96  DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT--VLVGLKVDLRKDGSDDVTKQEGD 153
Query: 133 -LAEQFN-IPFIKTSAKTRMGVDDAF 156
            L ++   + +I+ S+  ++G+++ F
Sbjct: 154 DLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 55  ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
           I DTAG E Y A+   Y R   G L+V+ ++   S+E+   +  +++   D + V + L+
Sbjct: 63  IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD-DNVAVGLI 121
Query: 115 GNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           GNK DL+   AV  ++A+  A +  + F +TSA     VD AF  L+  I
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L +   +      Y PT+ +++   +    E  +L + DTAGQEEY  +R       
Sbjct: 35  KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 94
Query: 76  EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-- 132
           +  LL FAVN+  SF++I + +  +IK   D  +   VLVG K DL     D    QE  
Sbjct: 95  DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT--VLVGLKVDLRKDGSDDVTKQEGD 152
Query: 133 -LAEQFN-IPFIKTSAKTRMGVDDAF 156
            L ++   + +I+ S+  ++G+++ F
Sbjct: 153 DLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE+Y  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 3   EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQ 61
           ++KL         K+    + +   F  +Y PT+       V       +  ++ DTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+VL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
              V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 128 DRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1   MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGE-TALLDILDT 58
           M + K+         K++LT    Q  F  +Y  TI  D + +++ + G     L I D 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 59  AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-PMV-LVGN 116
            GQ     M D+Y+   +G LLV+ + + +SFE++  +   +K+V +  E  P+V LVGN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 117 KCDL 120
           K DL
Sbjct: 124 KIDL 127

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K++L +      F + Y PT+ + Y   + + G+   L I DTAGQ++Y  +R  +    
Sbjct: 47  KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA 106
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL 120
              LL F V S  SF++I   +  ++      ++VP+++VG K DL
Sbjct: 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDL 150

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 54  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 111
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 112 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+ L I   +  F + Y PT+ ++Y   V +DG    L + DTAGQE+Y  +R       
Sbjct: 23  KTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDS 82
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKD----AEEVPMVLVGNKCDL----------- 120
              L+ F+++   S E++     Q K + +     + VP++LVG K DL           
Sbjct: 83  NVVLICFSIDLPDSLENV-----QEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLR 137
Query: 121 --STWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVR 161
                 V   + Q +A+Q     + + SAKT  GV + F    R
Sbjct: 138 QEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 124 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 124 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  +RD Y    +  ++ F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            D+ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 55  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 112
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   +      + N+ +   SAK+    +  F  L R++  +  L
Sbjct: 113 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            D+ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 56  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 113
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   +      + N+ +   SAK+    +  F  L R++  +  L
Sbjct: 114 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            D+ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 63  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 120
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   +      + N+ +   SAK+    +  F  L R++  +  L
Sbjct: 121 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 57  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 114
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 115 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 120
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 121 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 176

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAGQE++  + D Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
            ++ DTAG E++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+V
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
           L GNK D+    V   ++     + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           KSAL  + +   +V E  P     ++K++V+DG++ LL I D  G  E      Q+    
Sbjct: 33  KSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL-----QFAAWV 86
Query: 76  EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMNQAQE 132
           +  + VF++    SF+ + +Y  ++   ++A EVPMVLVG +  +S      +D ++A++
Sbjct: 87  DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK 146
Query: 133 LAEQF-NIPFIKTSAKTRMGVDDAF 156
           L+       + +T A   + V+  F
Sbjct: 147 LSTDLKRCTYYETCATYGLNVERVF 171

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM- 111
           L +LDTAG + Y     QY       +LVF V+SM+SFE   ++ E +K  +   E P+ 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 112 -VLVGNKCDLST--WAVDMNQAQELAEQFNIPFIKTSA 146
            VLV NK DL      V ++ AQ+ A    + F   SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 4   YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID--GETALLDILDTAGQ 61
           YK+         K+    +++   F   Y+ T+         +D  G     ++ DTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E+ + ++D Y     G +L F V S  + +++  + ++ + V    E P+V+  NK D+ 
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIK 130
Query: 122 T-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
               +      E+ +  N  + + SAKT       F  L R
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y  +R       
Sbjct: 36  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F ++  ++ + +   ++ +I+         M+LVG K DL T   D++   EL+
Sbjct: 96  DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 150
Query: 135 EQFNIP 140
                P
Sbjct: 151 NHRQTP 156

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y  +R       
Sbjct: 20  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F ++  ++ + +   ++ +I+         M+LVG K DL T   D++   EL+
Sbjct: 80  DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 134
Query: 135 EQFNIP 140
                P
Sbjct: 135 NHRQTP 140

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
           K+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y  +R       
Sbjct: 41  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 76  EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
           +  L+ F ++  ++ + +   ++ +I+         M+LVG K DL T   D++   EL+
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 155
Query: 135 EQFNIP 140
                P
Sbjct: 156 NHRQTP 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-113
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-111
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-109
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-109
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-108
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-107
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-106
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-106
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-106
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-105
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-105
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-105
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-104
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-103
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-102
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-101
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-100
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-99
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-95
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	6e-94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-79
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-51
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-48
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-48
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-47
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-46
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	8e-46
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-46
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-45
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-45
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-45
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-45
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-45
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-45
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-44
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-44
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-44
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-44
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-44
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-44
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-44
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-43
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-43
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-43
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-43
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-43
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-43
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-43
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-43
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-43
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-43
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-42
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-42
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-42
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	6e-42
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	7e-42
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	8e-42
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-40
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-38
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-36
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-36
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-35
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-31
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-25
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-14
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-07
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	7e-07
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-06
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	7e-06
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-04
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	1e-04
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	2e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-04
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-04
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	3e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	8e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	8e-04

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  319 bits (820), Expect = e-113
 Identities = 147/189 (77%), Positives = 160/189 (84%), Gaps = 3/189 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           EYKLVVVGA GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQE
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           EYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+E+VPMVLVGNKCDL +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGN 182
             VD  QAQ+LA  + IPFI+TSAKTR GVDDAFYTLVREI+K K    K+ KK+     
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKK---KK 180

Query: 183 KLKQCCVLL 191
           K K  CV++
Sbjct: 181 KSKTKCVIM 189

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  313 bits (805), Expect = e-111
 Identities = 139/168 (82%), Positives = 151/168 (89%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSF DI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 79  QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
            T  VD  QA ELA+ + IPFI+TSAKTR GV+DAFYTLVREI++ +M
Sbjct: 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  310 bits (796), Expect = e-109
 Identities = 100/195 (51%), Positives = 141/195 (72%), Gaps = 4/195 (2%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +A +K+++VG+GGVGKSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y+A+RD Y R+GEGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKE---KKK 176
                V + +A+  AEQ+N+ +++TSAKTR  VD  F+ L+REI+  KM   KE   KKK
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKK 191

Query: 177 RGISGNKLKQCCVLL 191
           R     ++++ C +L
Sbjct: 192 RKSLAKRIRERCCIL 206

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  308 bits (791), Expect = e-109
 Identities = 134/165 (81%), Positives = 148/165 (89%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDE DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  307 bits (788), Expect = e-108
 Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 3/192 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y++VV GAGGVGKS+L ++ ++  F D Y PTIED+YR+ +  D     L I DT G  
Sbjct: 8   DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSH 67

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLS 121
           ++ AM+   +  G  F+LVF+V S +S E++G   + I ++K + E++P++LVGNKCD +
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              VD  +AQ +A+++   F++TSAK    V + F  L+    +  M    + K+ G   
Sbjct: 128 QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQK 187

Query: 182 --NKLKQCCVLL 191
             +++K  C L+
Sbjct: 188 RTDRVKGKCTLM 199

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  304 bits (782), Expect = e-107
 Identities = 58/176 (32%), Positives = 104/176 (59%), Gaps = 1/176 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +   K+V++G   VGK++L  Q ++  F + YDPT+E++Y K V +  +   L ++DTAG
Sbjct: 22  VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           Q+EYS +   ++    G++LV++V S+ SF+ I S  +++        VP+VLVGNK DL
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141

Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
           S    V   + ++LAE +   F+++SA+        F  +++EI + +   G+E++
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  301 bits (774), Expect = e-106
 Identities = 81/166 (48%), Positives = 127/166 (76%), Gaps = 1/166 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYK+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   ++L+ILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E++++MRD Y++ G+GF+LV+++ + +SF+DI   R+QI RVK  E+VP++LVGNK DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            +   V  ++ + LAE++  PF++TSAK++  VD+ F  +VR++  
Sbjct: 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  301 bits (773), Expect = e-106
 Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 1/174 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
             K+ ++G   VGKS+LTIQ ++  FVD YDPTIE+++ K + ++G+   L ++DTAGQ+
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           EYS     Y     G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
              +   + + LAE +N  F+++SAK      D F  ++ E +K      + K 
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  301 bits (773), Expect = e-106
 Identities = 92/169 (54%), Positives = 128/169 (75%), Gaps = 1/169 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +A +K+++VG+GGVGKSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y+A+RD Y R+GEGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
                V + +A+  AEQ+N+ +++TSAKTR  VD  F+ L+REI+  KM
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  299 bits (769), Expect = e-105
 Identities = 93/167 (55%), Positives = 119/167 (71%), Gaps = 1/167 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
            +KLVVVG GGVGKSALTIQ IQ++FV +YDPTIEDSY K   +DG  A LDILDTAGQE
Sbjct: 9   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E+ AMR+QYMR G GFLLVFA+N  +SF ++G    QI RVKD ++ P+VLVGNK DL +
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
              V  ++A       ++ + + SAK R+ VD+AF  LVR ++K + 
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  298 bits (766), Expect = e-105
 Identities = 94/167 (56%), Positives = 128/167 (76%), Gaps = 2/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVV+G+GGVGKSALT+Q +Q  FV++YDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120

Query: 121 -STWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  298 bits (765), Expect = e-105
 Identities = 89/166 (53%), Positives = 126/166 (75%), Gaps = 1/166 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +A +K+++VG+GGVGKSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y+A+RD Y R+GEGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V + +A+  A+Q+N+ +++TSAKTR  VD  F+ L+REI+ 
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  297 bits (762), Expect = e-104
 Identities = 96/167 (57%), Positives = 122/167 (73%), Gaps = 2/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKLVVVG GGVGKSALTIQ  Q  FVD+YDPTIEDSY K   ID + A+LD+LDTAG
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135

Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKT-RMGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  292 bits (750), Expect = e-103
 Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y++ V GAGGVGKS+L ++ ++  F + Y PT+ED+YR+ +  D     L I DT G  
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
           ++ AM+   +  G  F+LV+++ S +S E++    EQI  +K D E +P++LVGNKCD S
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 122 T-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
               V  ++A+ LA  +   F++TSAK    V + F  L+   K+  +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 170

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  289 bits (743), Expect = e-102
 Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 3/170 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           MA Y++V++G  GVGK++L          D ++   ED Y + + +DGE   L ++DT  
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61

Query: 61  QE--EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
            E  + S  ++  ++ G  +++V+++    SFE     R Q++R   A+ VP++LVGNK 
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121

Query: 119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           DL+    V + + +  A  F+  FI+TSA  +  V + F  +VR+++  +
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  288 bits (739), Expect = e-101
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 2   AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           + YK++++GA GVGKSAL                   +Y + +V+DGE A L + D   Q
Sbjct: 1   SVYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
           +    +    M  G+ +++V++V    SFE     R Q++R +  ++VP++LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  V +++ +  A  F+  FI+TSA     V   F  +VR+I+  +
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  287 bits (736), Expect = e-100
 Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
            AE KL + G  GVGKSAL ++ +   F+ EYDPT+E +YR Q  ID E   ++ILDTAG
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+    R+ +MR GEGF+LV+ +    SFE++   +  +  +K  + V ++LVGNK DL
Sbjct: 86  QEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144

Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKT-RMGVDDAFYTLVREIKKDKM 168
                V   + ++LA +    F + SA T    + + FY L RE+++ +M
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 194

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  284 bits (728), Expect = 3e-99
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+++VG  GVGKS L            ++P   ED+Y +++++D E   L + D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 63  EYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
           +    +RD  ++TG+ FL+VF+V   +SF  +     +++  +   ++P++LVGNK DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +  V + + + LA   +   I+TSA       + F   VR+I+  +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  280 bits (718), Expect = 5e-98
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 3/169 (1%)

Query: 2   AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAG 60
             +K+++VG  GVGKS L            ++    ED+Y +++++D E   L + D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 61  QEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           Q +    ++D  ++TG+ FL+VF+V   +SF  +     +++  +   ++P++LVGNK D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           L  +  V + + + LA   +   I+TSA       + F   VR+I+  +
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  274 bits (702), Expect = 2e-95
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 5/168 (2%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E  L ++G  G GKSALT++ +   F+ EYDP +ED+Y  +  +D +   L ++DTA  +
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK-RVKDAEE-VPMVLVGNKCDL 120
                 ++Y+     FL+V++V+S +SF+   SY E +    K+ +  +P +L+GNK D+
Sbjct: 81  TPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTLVREIKKD 166
           + +  V   +   LA +F   F + SA      V   F+  VRE +++
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  273 bits (701), Expect = 6e-95
 Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETA---LLDI 55
              Y++V++G  GVGKS L       H     + +   ED+Y + +++DGE+A   LLD+
Sbjct: 35  NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94

Query: 56  LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
            +  G+ E+  + D  M+ G+ +L+V+++    SFE     R Q++R +  E++P++LVG
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152

Query: 116 NKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
           NK DL     V +++ +  A  F+  FI+TSA  +  V + F  +VR+++  +  + K
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  270 bits (693), Expect = 6e-94
 Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 8/189 (4%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETA---LLDI 55
           M  Y++V++G  GVGKS L       H   + D     ED+Y + +++DGE+A   LLD+
Sbjct: 4   MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63

Query: 56  LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
            +  G+ E+  + D  M+ G+ +L+V+++    SFE     R Q++R +  E++P++LVG
Sbjct: 64  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121

Query: 116 NKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
           NK DL     V +++ +  A  F+  FI+TSA  +  V + F  +VR+++  +  + K +
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNE 181

Query: 175 KKRGISGNK 183
           ++      K
Sbjct: 182 RRLAYQKRK 190

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  263 bits (674), Expect = 4e-91
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E K+ +VG    GKSAL  + +   +V E  P     ++K++V+DG++ LL I D  G  
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPP 78

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E      Q+    +  + VF++    SF+ + +Y  ++   ++A EVPMVLVG +  +S 
Sbjct: 79  EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 123 W---AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
                +D ++A++L+       + +T A   + V+  F  + +++   +
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  233 bits (596), Expect = 2e-79
 Identities = 37/174 (21%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           + E +L V+G    GKS+L  + +   +    + T  + Y+K++++DG+T L+ I + AG
Sbjct: 5   IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK--RVKDAEEVPMVLVG--N 116
                    ++    +  + VF++    SF+ +     Q+   R +    + + LVG  +
Sbjct: 64  AP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 117 KCDLSTW-AVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           +   S+   V   +A+ L A+     + +T A   + VD  F  + +++   + 
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  209 bits (533), Expect = 2e-69
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 15/200 (7%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
               K V VG G VGK+ + I    N F  +Y PT+ D++   V +DG+   L + DTAG
Sbjct: 7   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+YS +R    R  + F+L F++ S  S+E++        R + A  VP+VLVG K DL
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDL 125

Query: 121 ---------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
                     T  +   Q +EL +Q     +I+ S+KT+  V   F T ++ + +    +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

Query: 171 GKEKKKRGISGNKLKQCCVL 190
              ++++    N  +  C +
Sbjct: 186 EVPRRRK----NHRRSGCSI 201

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  162 bits (413), Expect = 2e-51
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
               K V+VG G VGK++L +    N +  EY PT  D++   V +DG    L + DTAG
Sbjct: 18  GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           Q+E+  +R       + FLL F+V S  SF+++        R     + P++LVG + DL
Sbjct: 78  QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDL 136

Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKD 166
                            V    A+ LAE+     +I+ SA T+  + + F   +      
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG--- 193

Query: 167 KMLRGKEKKK 176
             ++  + ++
Sbjct: 194 --IQYSDTQQ 201

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  155 bits (393), Expect = 2e-48
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 1/178 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            K++++G  GVGKS+L ++   + F  E   TI   ++ K + +DG  A L I DTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R  +G +LV+ V    +F  + ++  +++      ++  +LVGNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
             VD N+  + A + ++ FI+ SAKT  GV  AF  LV +I +   L   E +  G S
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  155 bits (394), Expect = 3e-48
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 4/176 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETALLDILDTAGQ 61
           YK+ ++G GGVGK+    +++   F   Y+ T+   +     +   G     ++ DTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E+ + ++D Y     G +L F V S  + +++  + ++ + V    E P+V+  NK D+ 
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK 130

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
               +      E+ +  N  + + SAKT       F  L R       L       
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  152 bits (386), Expect = 2e-47
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 1   MAEY----KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDI 55
           MA      K++++G GGVGKS+L  + + N F  +   TI  +   K + +DG    + I
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 56  LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMV 112
            DTAGQE + ++R  + R  +  LL F+V+  +SF+++ +++++      VK+ E  P V
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120

Query: 113 LVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
           ++GNK D+S   V   +AQ       + P+ +TSAK    V  AF   VR +   +
Sbjct: 121 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  151 bits (384), Expect = 4e-47
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
               K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG
Sbjct: 6   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 65

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCD 119
           QE+Y+ +R    R  + F+L F++ S  S+E++    + I  +K  A  VP+VLVG K D
Sbjct: 66  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIVLVGTKLD 123

Query: 120 L-----------STWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVREI 163
           L               +   Q +EL +    P +I+ S+K++  V   F   +R +
Sbjct: 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (380), Expect = 2e-46
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG G VGK+ L +   +      Y PT+ +++   +    E  +L + DTAGQEEY
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
             +R       +  LL FAVN+  SF++I + +  +IK     +    VLVG K DL   
Sbjct: 85  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH--YIDTAKTVLVGLKVDLRKD 142

Query: 121 STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
            +  V   +  +L ++   + +I+ S+  ++G+++ F   V  I        K   K
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI-----FSNKPVPK 194

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  149 bits (379), Expect = 3e-46
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 22/191 (11%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M   KLVVVG G  GK+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAG
Sbjct: 23  MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 82

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCD 119
           QE+Y  +R       +  L+ F+V+S  S E+I   +  ++K       VP++LV NK D
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK--HFCPNVPIILVANKKD 140

Query: 120 L-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
           L                 V  +  + +A +     +++ SAKT+ GV + F T  R    
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA-- 198

Query: 166 DKMLRGKEKKK 176
              L+ +   +
Sbjct: 199 ---LQKRYGSQ 206

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  148 bits (377), Expect = 7e-46
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 12/197 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V++D     + I DTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMVLVGNKCD 119
            + ++   + R  +  +LVF V +  +F+ + S+R++       +D E  P V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 120 LSTWAVDMNQAQE-LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK---DKMLRGKEKK 175
           L    V   +AQ     + NIP+ +TSAK  + V+ AF T+ R   K   +  L  +  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188

Query: 176 KRGISGN----KLKQCC 188
              +  N       + C
Sbjct: 189 PIKLDKNERAKASAESC 205

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  148 bits (377), Expect = 8e-46
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 4/185 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K++++G   VGK++   +   + F   +  T+  D   K +  + +   L I DTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   GF+L++ + + +SF  +  +  QIK     +   ++LVGNKCD+  
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDMED 127

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              V   + ++LA+     F + SAK  + V   F  LV  I + KM    +     ++G
Sbjct: 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE-KMSESLDTADPAVTG 186

Query: 182 NKLKQ 186
            K   
Sbjct: 187 AKQGP 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  150 bits (380), Expect = 8e-46
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 8/152 (5%)

Query: 22  QLIQNHFVDEYDPTIEDSYRKQVVIDGETAL--LDILDTAGQEEYSAMRDQYMRTG---- 75
           + I +     +  T    Y K+       +   L    T           + M  G    
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 76  EGFLLVFAV--NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL 133
           +GFLL   V     ++F+D   +   +       + P+V+V  KCD        +     
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             + N+  ++TSA++ + VD AF TLV+ I K
Sbjct: 224 LSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  149 bits (377), Expect = 1e-45
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +KLV+VG GG GK+    + +   F  +Y  T+  + +      +      ++ DTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           ++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+VL GNK D+  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 133

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
                 ++     + N+ +   SAK+    +  F  L R++  D  L 
Sbjct: 134 -RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  148 bits (376), Expect = 1e-45
 Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            K++++G  GVGKS L ++ +++ F   +  TI   ++ K V I+G+   L + DTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G +LV+ V   ++F +I  + + +    + +E  ++LVGNK D+ T
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMET 139

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGN 182
             V  +Q + LA++  IPFI++SAK    V++ F+TL + I++ K+   K          
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE-KIDSNKLVGVGNGKEG 198

Query: 183 KLKQ 186
            +  
Sbjct: 199 NISI 202

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  148 bits (374), Expect = 2e-45
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K VVVG G VGK+ L +    + F +EY PT+ D Y   V + G+  LL + DTAGQE+Y
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL--- 120
             +R       + FL+ F+V +  SF+++    E +  +K+ A  VP +L+G + DL   
Sbjct: 80  DRLRPLSYPMTDVFLICFSVVNPASFQNV--KEEWVPELKEYAPNVPFLLIGTQIDLRDD 137

Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
                         + + Q Q+LA++     +++ SA T+ G+   F   + 
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  147 bits (374), Expect = 2e-45
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 15/175 (8%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
               K VVVG G VGK+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y  +R       + FL+ F++ S  SFE++ +      R       P++LVG K DL
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 146

Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
                            +   Q   +A++   + +++ SA T+ G+   F   +R
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  146 bits (370), Expect = 3e-45
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
            K+VVVG G VGKS++  +  +  F  +Y  TI  D   +Q+ ++ E   L + DTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E+ A+   Y R  +  +LVF+    +SFE I S+RE++    +  ++P  LV NK DL  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTALVQNKIDLLD 123

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              +   +A+ LA++  + F +TS K  + V + F  L  +  +
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  146 bits (371), Expect = 4e-45
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS+L ++   N F   Y  TI   ++ + V I+GE   L I DTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V S +SF ++  +  +I +    ++V  +LVGNK D   
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPE 127

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
              V+   A + A Q  I   +TSAK  + V++ F  +   + +        K++
Sbjct: 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ 181

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  146 bits (370), Expect = 4e-45
 Identities = 54/163 (33%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            K++++G  GVGKS L ++ +++ F   +  TI   ++ K V I+G+   L I DTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G +LV+ +   ++F +I  + + +    + +E  ++LVGNK D+ T
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMET 122

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V  +Q + LA++  IPFI++SAK    V++ F+TL + I++
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  146 bits (370), Expect = 4e-45
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGE-TALLDILDTAGQ 61
            K++++G  GVGK++L  + + + +  +Y  TI  D   K+V +DG+  A + + DTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMVLVGNKC 118
           E + ++   + R  +  +LV+ V +  SFE+I S+R++      V   E  P V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 119 DLST--WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           D       V    AQELA+   +IP   TSAK  + VD AF  + R   +
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  145 bits (368), Expect = 1e-44
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 9/170 (5%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           YK+V+ G   VGKS+  ++L +N F +    T+   ++ K +++DGE  +L + DTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R  +G LL++ V   KSF +I  + + I+     E VP++LVGNK D+  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRD 147

Query: 123 W-------AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                    V  +  ++LA  +   F +TSAK    + +A   L RE+KK
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  145 bits (369), Expect = 2e-44
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 13/192 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETAL---------- 52
            KL+ +G  GVGK+    +   N F  ++  T+  D   K+VV + +             
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
           L + DTAGQE + ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +V
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 113 LVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRG 171
           L+GNK DL     V+  QA+ELA+++ IP+ +TSA T   V+ A  TL+  I K +M + 
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204

Query: 172 KEKKKRGISGNK 183
            EK +   + N 
Sbjct: 205 VEKTQIPDTVNG 216

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  144 bits (366), Expect = 2e-44
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G   VGK++   +   + F   +  T+   ++ K V    +   L I DTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   GF+L++ + + +SF  +  +  QIK     +   ++LVGNKCD+  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEE 142

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   + Q LAEQ    F + SAK  + V  AF  LV  I  
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  144 bits (366), Expect = 3e-44
 Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++   + + + Y  TI  D   + + +DG+T  L I DTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R    E V  +LVGNKCDL+T
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTT 135

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK +M  G        S 
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK-RMGPGATAGGAEKSN 194

Query: 182 NK 183
            K
Sbjct: 195 VK 196

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  144 bits (365), Expect = 5e-44
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGK+ L  +  Q  F      TI   +  K V I+GE   L I DTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R+    +L + +   +SF  +  +  +I++     +V  VLVGNK DL+ 
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAE 145

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   +A+E +E  ++ +++TSAK    V+  F  L   +  
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  143 bits (362), Expect = 6e-44
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETAL-LDILDTAGQ 61
            K+VV+G G  GK++LT    Q  F  +Y  TI  D + +++ + G   + L I D  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCD 119
                M D+Y+   +G LLV+ + + +SFE++  +   +K+V +    +  + LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126

Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
           L     +   +     ++        SAKT   V   F  +  EI   K+
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  143 bits (363), Expect = 8e-44
 Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 4/185 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGKS L  +  +N F  E   TI  +   + + +DG+T    I DTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   G LLV+ +    ++E++  + ++++   D   + ++LVGNK DL  
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 124

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
             AV  ++A+  AE+ N+ FI+TSA     V++AF  ++ EI +  + + +   +     
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR-IVSQKQIADRAAHDE 183

Query: 182 NKLKQ 186
           +    
Sbjct: 184 SPGNN 188

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  143 bits (363), Expect = 9e-44
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++   + + + Y  TI  D   + + +DG+T  L I DTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF ++  + ++I R    E V  +LVGNKCDL+T
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTT 152

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              VD   A+E A+   IPF++TSAK    V+ +F T+  EIKK
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  143 bits (362), Expect = 1e-43
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G   VGK++   +   + F   +  T+   ++ K V    +   L I DTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   GFLL++ + + +SF  +  +  QIK     +   ++LVGNKCDL  
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGNKCDLED 141

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V     + LA+     F + SAK  + V   F  LV  I +
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  143 bits (362), Expect = 1e-43
 Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G ++V+ V   +SF  +  + ++I R      V  +LVGNKCDL  
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKD 127

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              V+ + A+E A+   +PF++TSA     V+DAF T+ R+I K+ M +    +      
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI-KESMSQQNLNETTQKKE 186

Query: 182 NK 183
           +K
Sbjct: 187 DK 188

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  142 bits (360), Expect = 2e-43
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K +++G  GVGKS L  Q  +  F+ +   TI  +   + + + G+   L I DTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + A+   Y R   G L+V+ +    ++  + S+    + + +     ++L+GNK DL  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEA 134

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
              V   +A++ AE+  + F++ SAKT   V+DAF    ++I ++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  142 bits (361), Expect = 2e-43
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGK+ L  +  +N F  +   TI  +   + V++        I DTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y A+   Y R   G LLVF +   +++  +  + +++    +   + ++LVGNK DLS 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQ 144

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   +A+  AE   + F++TSA     V+ AF T+++EI  
Sbjct: 145 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  142 bits (360), Expect = 2e-43
 Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 6/168 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K++V+G   VGK+ LT +     F D  + TI  D   + V IDGE   + + DTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 63  EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
            +  +M   Y R     + V+ + +M SF  + ++ E+ K+   A ++P +LVGNKCDL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIKK 165
           +   V  + AQ+ A+  ++P  +TSAK       V+  F TL  ++K 
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  142 bits (360), Expect = 2e-43
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K +V+G+ G GKS L  Q I+N F  + + TI  +   + V + G+T  L I DTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + S +++  + ++    + +     + ++L GNK DL  
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDP 144

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V   +A   A++  + F++TSA T   V++AF    R I  
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  141 bits (358), Expect = 3e-43
 Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 4/177 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGK+ +  +  ++ F   +  TI   ++ + + +DG+   L I DTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G +LV+ + + KSF++I ++   I+      +V  +++GNKCD++ 
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVND 127

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRG 178
              V   + ++LA  + I F++TSAK  + V++AF+TL R+IK  KM +  +    G
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA-KMDKNWKATAAG 183

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  141 bits (358), Expect = 5e-43
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 13/183 (7%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-----------EDSYRKQVVIDGETAL 52
            K + +G  GVGK+++  Q     F  ++  T+             +     V  G+   
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
           L + DTAG E + ++   + R   GFLL+F + + +SF ++ ++  Q++    +E   +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 113 LVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRG 171
           L GNK DL    AV   +A+ELAE++ IP+ +TSA     +  A   L+  I K +M R 
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK-RMERS 190

Query: 172 KEK 174
            +K
Sbjct: 191 VDK 193

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  140 bits (355), Expect = 6e-43
 Identities = 51/168 (30%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
           + ++KLV++G   VGKS+L ++ ++  F +  + TI  ++  + V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R      + + L GNK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD 122

Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
           L+   AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  141 bits (357), Expect = 6e-43
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 4/171 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K +++G  GVGKS L +Q     F   +D TI  +   + V IDG+   L I DTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ +   ++F  + S+ E  ++      + ++L+GNK DL +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLES 140

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
              V   + +  A +  + F++TSAKT   V++AF    +EI   K+ +G 
Sbjct: 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI-YRKIQQGL 190

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  140 bits (356), Expect = 8e-43
 Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGKS L  +  +N F  E   TI  +   + + +DG+T    I DTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y A+   Y R   G LLV+ +    ++E++  + ++++   D   + ++LVGNK DL  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 148

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
             AV  ++A+  AE+  + FI+TSA     V+ AF T++ EI
Sbjct: 149 LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  140 bits (355), Expect = 1e-42
 Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 4/176 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
           +K +V+G  G GKS L  Q I+  F D+ + TI  +   K + + G+   L I DTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + S +++  + ++    + +   + + ++L GNK DL  
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDA 129

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKR 177
              V   +A   A++  + F++TSA T   V++AF    R+I  +K+  G+   +R
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-LNKIESGELDPER 184

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  140 bits (354), Expect = 2e-42
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
           + E K+ ++G  GVGKS++  + +Q+HF     PTI  S+  K V    E     I DTA
Sbjct: 21  IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE + ++   Y R     ++V+ +    SF  +  + +++K     E + M + GNKCD
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCD 139

Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           LS    V +  A+E AE      ++TSAK  + +++ F  + R+I  
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  139 bits (353), Expect = 3e-42
 Identities = 48/198 (24%), Positives = 98/198 (49%), Gaps = 15/198 (7%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KLV +G   VGK++L  + + + F + Y  TI   +  K + ++  T  L + DTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y+R     ++V+ + ++ SF+    + + ++  +   +V ++LVGNK DL+ 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLAD 135

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
              V + + +  A++ N+ FI+TSAK    V   F  +   +    M   +++ +  +  
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP--GMESTQDRSREDMID 193

Query: 182 NKLKQ----------CCV 189
            KL++          C +
Sbjct: 194 IKLEKPQEQPVSEGGCLL 211

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  139 bits (353), Expect = 4e-42
 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 4   YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTI-EDSYRKQVVIDGETALLDI--LDT 58
            K+ VVG   VGKSAL        + F+ +Y  T   +     V I   T  +++  LDT
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80

Query: 59  AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGN 116
           AG + Y     QY       +LVF V+SM+SFE   ++ E +K  +      +  VLV N
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140

Query: 117 KCDLST--WAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
           K DL      V ++ AQ+ A    + F   SA       D  F ++     +
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  138 bits (350), Expect = 4e-42
 Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K+V++G G VGK++L ++  +N F D++  T+  S+  K++ I G+   L I DTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + A+   Y R   G +LV+ +    SF+ + ++ ++++++    E+ + +VGNK DL  
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEK 125

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V + +A+  AE        TSAK   G+++ F  L + + +
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  139 bits (353), Expect = 6e-42
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGKS L  +  +N F  +   TI  +   + + I+G+     I DTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y A+   Y R   G L+V+ ++   S+E+   +  +++   D + V + L+GNK DL+ 
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAH 132

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
             AV   +++  A++  + F +TSA     VD AF  L+  I   K+ + +       + 
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI-YQKVSKHQMDLGDSSAN 191

Query: 182 NKLKQ 186
                
Sbjct: 192 GNANG 196

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  138 bits (350), Expect = 7e-42
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 4/165 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            +++++G+ GVGK++L  +   + F +    T+   ++ K V + G+   L I DTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            ++++   Y R+ +G +LV+ +   ++F+D+  + + I +    E+  ++LVGNK D  T
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCET 145

Query: 123 W-AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
              +   Q ++ A+Q   + F + SAK    VD+ F  LV +I K
Sbjct: 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  138 bits (351), Expect = 7e-42
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +KLV+VG   VGK+ +  +     F +    TI  D   K + I G+   L I DTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R+  G +L + +    SF  +  + E +++      +  +L+GNK DLS 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKSDLSE 148

Query: 123 W-AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTLVREIKK 165
              V + +AQ LAE ++I   I+TSAK    V++AF  +  E+  
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  137 bits (348), Expect = 8e-42
 Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
           + E K+ ++G  GVGKS++  + +++ F    +PTI  S+  K V    E     I DTA
Sbjct: 4   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E + A+   Y R     ++V+ +   ++F  + ++  ++++      + + + GNKCD
Sbjct: 64  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCD 122

Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           L+    V    A++ A+  +  F++TSAK  + +++ F  + R I  
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  136 bits (346), Expect = 2e-41
 Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 4/165 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYR-KQVVIDGETALLDILDTAGQ 61
           +K+++VG  GVGK+ L ++     F+   +  T+   +R K + +DG    L + DTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E + ++   Y R     LL++ V +  SF++I ++  +I       +V ++L+GNK D +
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA 129

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
               V     ++LA+++ +PF++TSAKT + VD AF  + +E+K+
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  136 bits (345), Expect = 3e-41
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            KLV++G  G GKS+L ++ +++ FV+  + TI  ++  + + ++  T   +I DTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y ++   Y R     ++VF V +  SFE    + ++++   +   + M L GNK DL  
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLD 131

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
              V    AQ  A++  + F++TSAKT   V + FY + R + + +
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  136 bits (345), Expect = 7e-41
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 19/177 (10%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +   K+V+VG GG GK++L +      F + Y PT+ + Y   + + G+   L I DTAG
Sbjct: 32  VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGNKC 118
           Q++Y  +R  +       LL F V S  SF++I +  Y E +      ++VP+++VG K 
Sbjct: 92  QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNH--FCKKVPIIVVGCKT 148

Query: 119 DL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
           DL                 V  ++ QE+A     + +++ SA+    V   F     
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  134 bits (339), Expect = 3e-40
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KLV +G   VGK++L  + + + F + Y  TI   +  K + ++  T  L + DTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y+R     ++V+ + +  SF     + + ++  +   +V ++LVGNK DLS 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSD 133

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   + +  A++ N+ FI+TSAK    V   F  +   +
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  132 bits (333), Expect = 3e-39
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 41/200 (20%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------------------- 36
           YK V++G   VGKS++ ++L ++ F +  + TI                           
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 37  -----------EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85
                        +       +      DI DTAGQE Y+++   Y R     ++VF ++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 86  SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS 145
           +  + +   ++  Q+K    +    ++LV NK D + + VD+ + Q+ A+  N+ FI+TS
Sbjct: 128 NSNTLDRAKTWVNQLKI---SSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184

Query: 146 AKTRMGVDDAFYTLVREIKK 165
           AKT   + + FY L  EI K
Sbjct: 185 AKTGTNIKNIFYMLAEEIYK 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  129 bits (325), Expect = 5e-38
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 21/179 (11%)

Query: 1   MAEY--KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDT 58
           MA    KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DT
Sbjct: 21  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80

Query: 59  AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGN 116
           AGQE+Y  +R       +  L+ F+++S  S E+I      E +K       VP++LVGN
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHF--CPNVPIILVGN 137

Query: 117 KCDL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
           K DL                 V   + +++A + +   +++ SAKT+ GV + F    R
Sbjct: 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  124 bits (314), Expect = 2e-36
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 22/187 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K VVVG G VGK+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE+Y
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
             +R       +  L+ F++ S  SFE++ + +  +++        P++LVG K DL   
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDD 124

Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
                         +   Q   +A++   + +++ SA T+ G+   F   +R +     L
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV-----L 179

Query: 170 RGKEKKK 176
                KK
Sbjct: 180 CPPPVKK 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (314), Expect = 2e-36
 Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 31/205 (15%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +A  KLV+VG    GK+A+   L ++ + + Y PT+ ++Y   +  + +   L + DT+G
Sbjct: 25  VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 84

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCD 119
              Y  +R       +  LL F ++  ++ +     +R +I          ++L+G K D
Sbjct: 85  SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTD 142

Query: 120 L-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVREIK 164
           L                 +   Q   +A+Q     +++ SA T    +   F T      
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC- 201

Query: 165 KDKMLRGKEKKKRGISGNKLKQCCV 189
               L               ++  V
Sbjct: 202 ----LNKPSPLP--------QKSPV 214

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  122 bits (308), Expect = 6e-36
 Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
           +   KLV++G   VGKS++ ++ + N F +  +PTI  ++  ++V I+  T   +I DTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE ++++   Y R  +  L+V+ V   +SF     + +++      +++ + LVGNK D
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKID 119

Query: 120 LSTW----AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                    V   + ++LAE+  + F +TSAKT   V+D F  +  +I  
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  122 bits (309), Expect = 7e-36
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG    GK+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
             +R       +  L+ F ++  ++ + +   ++ +I+         M+LVG K DL   
Sbjct: 69  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 126

Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVR 161
                         V  +Q   +A+Q     +I+ SA      V D F+    
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  122 bits (309), Expect = 1e-35
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 20/174 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG    GK+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGNKCDL-- 120
             +R       +  L+ F ++  ++ + +      E I+         M+LVG K DL  
Sbjct: 90  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEF--CPNTKMLLVGCKSDLRT 146

Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVR 161
                          V  +Q   +A+Q     +I+ SA      V D F+    
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  115 bits (291), Expect = 4e-33
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 18/182 (9%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIE-DSYRKQVVIDGETAL---LDIL 56
             KL++VG  G GK+ L  QL++    D      T+  D     + I  +      L++ 
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 57  DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVG 115
           D AG+EE+ +    +M     +L V+ ++  ++  + +  +   IK    A   P++LVG
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVG 119

Query: 116 NKCDLST----WAVDMNQAQELAEQFNIPFI-----KTSAKTRMGVDDAFYTLVREIKKD 166
              D+S      A      +EL  +   P I       + +    +     T++ E    
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

Query: 167 KM 168
           K+
Sbjct: 180 KI 181

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  118 bits (297), Expect = 1e-31
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 15/183 (8%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI---------DGETA 51
           + E K+ ++G G  GK++L  QLI   F  +   T   +   +            + +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
           L    D  GQE   A    +M     ++L+      ++  +   +   I++     + P+
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKY--GGKSPV 153

Query: 112 VLVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
           ++V NK D +    ++  +  E        F + S K   GV+    +L   +     + 
Sbjct: 154 IVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIY 213

Query: 171 GKE 173
           G  
Sbjct: 214 GTP 216

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 99.3 bits (247), Expect = 2e-25
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 21/178 (11%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
               K VVVG G VGK+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAG
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKD-AEEVPMVLVGNK 117
            E+Y  +R       + FL+ F++ S  SF  + +  Y E    V+      P++LVG K
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE----VRHHCPNTPIILVGTK 268

Query: 118 CDL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
            DL                 +   Q   +A++   + +++ SA T+ G+   F   +R
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 65.9 bits (161), Expect = 6e-14
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 24/183 (13%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQN----------HFVDEYDPTIEDSYRKQVV--IDGET 50
            +K+V  G G  GK+     +                 E + T+   +    +  + G  
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 51  ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK----DA 106
               +    GQ  Y+A R   +R  +G + V      +   +  S R   + +       
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 107 EEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN----IPFIKTSAKTRMGVDDAFYTLVRE 162
           ++VP+V+  NK DL   A+     + +    +     P ++  A    GV +    + R 
Sbjct: 134 DDVPIVIQVNKRDLPD-ALP---VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189

Query: 163 IKK 165
           +  
Sbjct: 190 VLA 192

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 36/177 (20%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           K+V+ G    GKS+L   L       V +   T  D  R+ + IDG    L I+DTAG  
Sbjct: 6   KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAG-- 61

Query: 63  EYSAMRD--------------QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE 108
               +R+              Q +   +  L +    +  + +    + E I R+    +
Sbjct: 62  ----LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAK 115

Query: 109 VPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +P+ +V NK D++       +   ++E      I+ SA+T  GVD     L   +K+
Sbjct: 116 LPITVVRNKADIT------GETLGMSEVNGHALIRLSARTGEGVDV----LRNHLKQ 162

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 20/177 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--DSYRKQVVIDGETALLDILDTAGQE 62
           KL+++G  G GKS++   +I +++       +          +       L++ D  GQ+
Sbjct: 5   KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 63  EY-----SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV-GN 116
            +     +  +D   +  +  + VF V S +  +DI  + + +K+++       + V  +
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 117 KCDL-------STWAVDMNQAQELAEQFNIP---FIKTSAKTRMGVDDAFYTLVREI 163
           K DL         + + M    E + +F  P      TS      +  A+  +V  +
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 35/145 (24%)

Query: 35  TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD--------------QYMRTGEGFLL 80
            IE+      + D    +  + DTAG      +R+                M   +  L 
Sbjct: 271 YIEE----CFIHDK--TMFRLTDTAG------LREAGEEIEHEGIRRSRMKMAEADLILY 318

Query: 81  VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140
           +  + + +  +++   RE       A     + V NK D +         + +A+     
Sbjct: 319 LLDLGTERLDDELTEIRELKAAHPAA---KFLTVANKLDRAA--NADALIRAIADGTGTE 373

Query: 141 FIKTSAKTRMGVDDAFYTLVREIKK 165
            I  SA    G+D     L + +  
Sbjct: 374 VIGISALNGDGIDT----LKQHMGD 394

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 33/177 (18%), Positives = 74/177 (41%), Gaps = 22/177 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G  G GK+ +  +L     V    PTI     + +        L++ D  GQ 
Sbjct: 18  ELRILILGLDGAGKTTILYRLQIGEVV-TTKPTI-GFNVETLSYKNLK--LNVWDLGGQT 73

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
                   Y        ++F V+S    + + +  +++  +   EE     +++  NK D
Sbjct: 74  SIRPYWRCYYADTAA--VIFVVDS-TDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDKM 168
                  ++ A E++++ N+  +K        +SA    G+ +    L+  IK++++
Sbjct: 131 QPG---ALS-ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 183

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E+K+++VG    GK+ +  Q   N  V    PTI  S  +++VI+       + D  GQE
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINNTR--FLMWDIGGQE 71

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
              +  + Y    E   ++  V+S    E I   RE++ ++   E+     +++  NK D
Sbjct: 72  SLRSSWNTYYTNTEF--VIVVVDS-TDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
           +      M    E+++   +  IK          A T  G+      ++  +K 
Sbjct: 129 VKE---CMT-VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 13/88 (14%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 78  FLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF 137
           ++   + +     E+     E++    + +++P ++V NK D++    ++ + ++  ++ 
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVH--GEFKDLPFLVVINKIDVADEE-NIKRLEKFVKEK 308

Query: 138 NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
            +  IK SA    G+D     +++ ++ 
Sbjct: 309 GLNPIKISALKGTGIDLVKEEIIKTLRP 336

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           + ++++VG    GK+ +  +L     V    PTI     + V          + D  GQ+
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKNIC--FTVWDVGGQD 84

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           +   +   Y +  +G  L+F V+S   +  ++     +++ +  +  +  +++  NK D+
Sbjct: 85  KIRPLWRHYFQNTQG--LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142

Query: 121 STWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
                 M    EL ++  +  ++        T A    G+ D    L  E+ K
Sbjct: 143 PN---AMP-VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 22/188 (11%), Positives = 56/188 (29%), Gaps = 44/188 (23%)

Query: 6   LVVVGAGGVGKSALTIQLIQNHFVDEYDP------TIEDSYRKQVVIDGETALLDILDTA 59
           +++ G  G GK+ + + +  ++ V            +++    + V++    LL  +D  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 60  GQEEYSAMRDQYMRTGEGF---------------LLVFA-VNSMKSFE--DIGSYREQIK 101
                    +  +R                    LLV   V + K++   ++        
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------ 266

Query: 102 RV----KDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
           ++    +  +    +       +S      +      E  ++  +K          D   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSL-LLK---YLDCRPQD--- 317

Query: 158 TLVREIKK 165
            L RE+  
Sbjct: 318 -LPREVLT 324

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 55  ILDTAGQEEYSAMRDQYMRTGEGFL-----LVFAVNSMKSFEDIGSYREQIKRVKDAEEV 109
           ++DT G ++   +    +             +   +S  +  +     + +   K+ E +
Sbjct: 87  LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE----DDVVNLFKEME-I 141

Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           P V+V NK D+               ++    +  SA  + G DD    + + I +
Sbjct: 142 PFVVVVNKIDVLG-EKAEELKGLYESRYEAKVLLVSALQKKGFDD----IGKTISE 192

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 31/174 (17%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           + +++++G    GK+++  +L     V    PT+     + +     +   ++ D  GQ 
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTV-GVNLETLQYKNIS--FEVWDLGGQT 77

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
                   Y    +   +++ V+S    + +G  + ++  + D +E     +++  NK D
Sbjct: 78  GVRPYWRCYFSDTDA--VIYVVDS-TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
           L       +   E+AEQ  +  I         +S+KT  G+ +    LV  +++
Sbjct: 135 LPD---AAS-EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 25/178 (14%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +L +VG    GK+     +    F ++  PT+     +++     T  + + D  GQ 
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV-GFNMRKITKGNVT--IKLWDIGGQP 78

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEE---VPMVLVGNK 117
            + +M ++Y R      +V+ V++   +  E     + ++  + D  +   +P++++GNK
Sbjct: 79  RFRSMWERYCRGVSA--IVYMVDAADQEKIEAS---KNELHNLLDKPQLQGIPVLVLGNK 133

Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
            DL   A+D    +EL E+ N+  I+         S K +  +D     L++  K  +
Sbjct: 134 RDLPG-ALD---EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 22/176 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G  G GK+ +  +L     V    PTI     + V          + D  G  
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTI-GFNVETVTYKNLK--FQVWDLGGLT 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
                   Y    +   +++ V+S    + IG  + ++  + + EE     +V+  NK D
Sbjct: 63  SIRPYWRCYYSNTDA--VIYVVDS-CDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
           +      M  + E+A    +P +K        TSA    G+D+A   LV  +K  +
Sbjct: 120 MEQ---AMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           ++++VG    GK+ +  +L     V    PTI     + V     +    + D  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKNIS--FTVWDVGGQDKI 57

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCDLS 121
             +   Y +  +G  L+F V+S    E +   RE++ R+   +E     +++  NK DL 
Sbjct: 58  RPLWRHYFQNTQG--LIFVVDS-NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 122 TWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
                MN A E+ ++  +  ++        T A +  G+ +    L  +++  K
Sbjct: 115 N---AMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 51/213 (23%)

Query: 6   LVVVGAGGVGKSALTIQL------IQNHFVDEYDPT--------IEDSYRKQVVID--GE 49
           +++ GA  VGKS+    +      +Q+     Y  T         +    K  +ID  G 
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQS-----YSFTTKNLYVGHFDHKLNKYQIIDTPG- 85

Query: 50  TALLDILDTAGQEEYSAMRDQYMRTGEGFL------LVFAVNSMKSFEDIGSYREQI--- 100
                +LD A +      R+    T    L      ++F ++   S +   + +EQI   
Sbjct: 86  -----LLDRAFEN-----RNTIEMTTITALAHINGVILFIIDI--SEQCGLTIKEQINLF 133

Query: 101 KRVKDA-EEVPMVLVGNKCDLSTWAVDMNQAQELAEQF------NIPFIKTSAKTRMGVD 153
             +K       +V+  NK D           + L +Q        I F   S  T +GV+
Sbjct: 134 YSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVE 193

Query: 154 DAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQ 186
            A  T    +K D+        +  +   KL +
Sbjct: 194 QAKITACELLKNDQ-AESILLDQEQLLNTKLGE 225

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 40/145 (27%)

Query: 35  TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD--------------QYMRTGEGFLL 80
            +E     Q+V+ G    + +LDTAG      +R+              Q   T +  LL
Sbjct: 262 VVES----QLVVGG--IPVQVLDTAG------IRETSDQVEKIGVERSRQAANTADLVLL 309

Query: 81  VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140
                +  +  D    +E  ++VK     P++LV NK DL               +    
Sbjct: 310 TIDAATGWTTGD----QEIYEQVKHR---PLILVMNKIDLVE---KQLITSLEYPENITQ 359

Query: 141 FIKTSAKTRMGVDDAFYTLVREIKK 165
            + T+A  + G+D     L   I +
Sbjct: 360 IVHTAAAQKQGIDS----LETAILE 380

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +L+++G    GK+ +  +           PT+     K +   G    L+I D  GQ+
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTL-GFNIKTLEHRGFK--LNIWDVGGQK 73

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
              +    Y  + +G  L++ V+S    + +   + +++ +   E      +++  NK D
Sbjct: 74  SLRSYWRNYFESTDG--LIWVVDS-ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
           L      ++    + E   +  I+         SA T   +      L+ +I  
Sbjct: 131 LPG---ALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 40/146 (27%)

Query: 35  TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD---------------QYMRTGEGFL 79
            I +    ++VI G   L  I+DTAG      +R                Q +   +  L
Sbjct: 281 VISE----EIVIRG--ILFRIVDTAG------VRSETNDLVERLGIERTLQEIEKADIVL 328

Query: 80  LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI 139
            V   +S    ED    R+ ++R+K+      ++V NK D+    ++  + +      + 
Sbjct: 329 FVLDASSPLDEED----RKILERIKNK---RYLVVINKVDVVE-KINEEEIKNKLGT-DR 379

Query: 140 PFIKTSAKTRMGVDDAFYTLVREIKK 165
             +K SA    G++     L   I +
Sbjct: 380 HMVKISALKGEGLEK----LEESIYR 401

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G    GK+ L  QL          PT      K V   G    L++ D  GQ 
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQ-GFNIKSVQSQGFK--LNVWDIGGQR 71

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           +       Y    +   L++ ++S   K FE+ G    ++   +    VP+++  NK DL
Sbjct: 72  KIRPYWRSYFENTDI--LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129

Query: 121 STWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
            T       A E+AE  N+  I+         SA T  GV D    + + +   K
Sbjct: 130 LT---AAP-ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 29/179 (16%), Positives = 72/179 (40%), Gaps = 24/179 (13%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           E  ++ +G    GK+ +  +L  ++       PTI     ++      +    + D +GQ
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI-GFSIEKFKSSSLS--FTVFDMSGQ 77

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-----VPMVLVGN 116
             Y  + + Y + G+   ++F ++S      +   +E++  + +  +     +P++   N
Sbjct: 78  GRYRNLWEHYYKEGQA--IIFVIDS-SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 117 KCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
           K DL      +  + ++++   +  IK        + A    G+ +    L  +I+  K
Sbjct: 135 KMDLRD---AVT-SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 22/123 (17%)

Query: 43  QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIG---SYREQ 99
           QV ++ +   +  LDT G E ++ MR +  +  +  +LV A        D G      E 
Sbjct: 49  QVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVILVVAA-------DDGVMPQTVEA 99

Query: 100 IKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP--------FIKTSAKTRMG 151
           I   K A  VP+++  NK D    A      QEL E   +P        F K SAKT+ G
Sbjct: 100 INHAKAAN-VPIIVAINKMDKPE-ANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157

Query: 152 VDD 154
           +D 
Sbjct: 158 LDH 160

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 5   KLVVVGAGGVGKSAL--TIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAG- 60
            ++V+G GGVGKS+   ++ + +    V  +             + G T  ++I+DT G 
Sbjct: 38  TVLVLGKGGVGKSSTVNSL-IGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGL 94

Query: 61  -------QEEYSAMRDQYMRTGEGFLLVFAVNSMKSF--EDIGSYREQIKRVKDAEEVPM 111
                   +    ++   +      LL      + +    D        +          
Sbjct: 95  VEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154

Query: 112 VLVGNKCDL 120
           +LV      
Sbjct: 155 LLVLTHAQF 163

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +  ++ VG    GK+ L ++L+   + D    +I DS     V +     L ++D  G E
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 63  EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-----VPMVLVGN 116
                + D++  +     +VF V+S     ++    E + +V            +++  N
Sbjct: 66  SLRFQLLDRFKSSARA--VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123

Query: 117 KCDLST 122
           K D++ 
Sbjct: 124 KQDIAM 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.7
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.64
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.64
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.63
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.57
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.48
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.37
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.36
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.25
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.19
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.14
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.09
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.72
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.66
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.58
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.43
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.43
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.36
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.35
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.23
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.14
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.09
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.99
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.93
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.76
2xxa_A	433	Signal recognition particle protein; protein trans	97.72
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.68
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.62
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.57
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.55
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.53
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.53
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.52
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.52
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.49
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.47
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.46
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.43
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.43
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.42
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.41
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.41
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.41
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.39
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.39
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.38
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.37
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.37
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.36
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.34
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.33
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.33
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.32
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.31
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.29
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.29
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.28
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.28
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.26
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.26
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.25
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.25
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.25
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.25
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.24
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.24
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.24
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.24
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.23
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.23
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.23
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.23
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.22
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.22
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.21
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.2
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.2
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.2
1g6h_A	257	High-affinity branched-chain amino acid transport	97.2
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.2
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.2
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.19
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.19
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.19
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.19
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.18
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.18
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.17
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.17
1via_A	175	Shikimate kinase; structural genomics, transferase	97.17
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.17
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.16
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.15
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.14
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.14
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.13
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.13
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.12
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.11
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.11
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.1
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.1
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.09
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.09
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.08
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.07
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.07
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.07
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.06
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.05
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.05
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.04
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.03
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.02
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.01
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.0
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.0
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.0
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.99
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.99
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.98
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.97
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.96
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.96
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.96
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.96
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.95
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.95
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.93
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.93
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.91
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.91
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.9
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.89
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.89
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.87
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.86
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.85
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.85
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.81
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.81
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.78
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.78
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.77
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.77
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.77
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.75
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.74
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.73
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.7
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.69
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.69
3bos_A	242	Putative DNA replication factor; P-loop containing	96.69
2og2_A	359	Putative signal recognition particle receptor; nuc	96.68
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.68
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.67
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.66
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.64
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.61
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.6
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.59
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.58
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.58
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.58
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.57
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.55
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.55
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.54
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.51
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.51
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.5
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.49
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.49
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.49
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.47
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.47
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.45
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.44
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.42
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.41
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.41
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.4
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.38
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.37
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.36
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.32
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.32
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.31
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.31
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.29
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.28
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.27
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.25
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.25
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.25
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.24
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.23
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.23
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.21
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.2
3uc9_A	233	Increased recombination centers protein 6; rossman	96.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.2
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.18
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.18
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.17
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.15
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.13
3co5_A	143	Putative two-component system transcriptional RES	96.13
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.12
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.12
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.11
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.09
2qgz_A	308	Helicase loader, putative primosome component; str	96.07
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.05
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.03
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.03
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.02
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.02
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.02
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.01
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.0
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.99
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.96
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.94
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.94
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.91
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.91
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.9
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.9
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.9
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.89

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.1e-42  Score=240.34  Aligned_cols=165  Identities=27%  Similarity=0.522  Sum_probs=141.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      |+++||+|+|.+|||||||++++..+.+...+.+|.+ +........++..+.+++|||+|++++..++..+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            5789999999999999999999999999988888887 555666778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||++++++++.+..|+..+.... .++.|+++|+||+|+.. +.++.+++++++++++++|+++||++|.||+++|+.
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            9999999999999999999987653 45789999999999976 678999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy11135        159 LVREIKKD  166 (191)
Q Consensus       159 i~~~~~~~  166 (191)
                      |++.+...
T Consensus       170 i~~~i~~~  177 (216)
T 4dkx_A          170 VAAALPGM  177 (216)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhh
Confidence            99988653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.8e-38  Score=217.50  Aligned_cols=187  Identities=78%  Similarity=1.121  Sum_probs=156.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++.+..+...+.+++.+........++..+.+.+|||||++++...+..++..+|++++|
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   82 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   82 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999999888888888877777788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.......+++..+++.++++++++||++|.|++++|++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  162 (189)
T 4dsu_A           83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR  162 (189)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877677899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135        162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL  191 (191)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
                      .+.+.+.....   ......++.+.||+|+
T Consensus       163 ~~~~~~~~~~~---~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          163 EIRKHKEKMSK---DGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             HHHHHHHHHHH---CSSTTCCC--------
T ss_pred             HHHHhhhhccc---ccccccccccceeeeC
Confidence            99876544332   3333445566677764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=219.93  Aligned_cols=190  Identities=52%  Similarity=0.908  Sum_probs=153.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++.++|+|+|.+|||||||++++.+..+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            46799999999999999999999999988888888887777777888888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  171 (206)
T 2bov_A           92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  171 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999988876666899999999999976 5678888999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhh----hhccccCCCccccceec
Q psy11135        160 VREIKKDKMLRGKE----KKKRGISGNKLKQCCVL  190 (191)
Q Consensus       160 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (191)
                      .+.+.+.+....++    .+.+....+..++||.+
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc~~  206 (206)
T 2bov_A          172 MREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL  206 (206)
T ss_dssp             HHHHHHHHHHHC-----------------------
T ss_pred             HHHHHHccccccccccCcccccchhhccccceecC
Confidence            99998754443322    22233334445678864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-37  Score=214.48  Aligned_cols=168  Identities=39%  Similarity=0.695  Sum_probs=147.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ..++|+++|.+|||||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++|
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   86 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV   86 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence            36899999999999999999999988777777777766666667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+..... ..+.|+++|+||+|+....+..+++..++..++++++++||++|.|++++|++|.
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (199)
T 2gf0_A           87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL  166 (199)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence            999999999999888877765432 2468999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+.+.+..
T Consensus       167 ~~~~~~~~~  175 (199)
T 2gf0_A          167 TLETRRNMS  175 (199)
T ss_dssp             HHCSSSCEE
T ss_pred             HHHhhhhcc
Confidence            988765543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.3e-35  Score=199.48  Aligned_cols=165  Identities=54%  Similarity=0.932  Sum_probs=147.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+.+||+++|.+|+|||||++++.+..+...+.++..........+++..+.+.+||+||++++...+..++..+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            78999999999999999999999999887777788777776777788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999999999999988876666899999999999975 5677888999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.9e-35  Score=205.34  Aligned_cols=166  Identities=36%  Similarity=0.623  Sum_probs=145.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+|||||++++...+..++..+|++++|
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv   87 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   87 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence            589999999999999999999999877776666653 3344566788888899999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+.... ....|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y           88 YDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 45789999999999976 56778889999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+.+....
T Consensus       167 ~~i~~~~~~  175 (206)
T 2bcg_Y          167 RQIKESMSQ  175 (206)
T ss_dssp             HHHHHHCCH
T ss_pred             HHHHHHHhh
Confidence            999775443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=9.5e-36  Score=199.92  Aligned_cols=165  Identities=49%  Similarity=0.884  Sum_probs=149.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|+|||||++++.+..+...+.++..........+++..+.+.+||+||++++...+..++..++++++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            78999999999999999999999999887777777777667777888888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||++|.|+++++++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999999888766667899999999999865 5677888899999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=6.5e-36  Score=200.90  Aligned_cols=164  Identities=57%  Similarity=0.986  Sum_probs=147.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+||+||++++...+..++..+|++++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            78999999999999999999999998887778788777666667778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.+ +++++++||++|.|+++++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999998887766667899999999999976 556788889999988 789999999999999999999


Q ss_pred             HHHHHH
Q psy11135        159 LVREIK  164 (191)
Q Consensus       159 i~~~~~  164 (191)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.1e-35  Score=201.41  Aligned_cols=165  Identities=58%  Similarity=0.926  Sum_probs=151.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++.+||+++|.+|+|||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999999888888888887777778889999899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccC-CCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~l~~~  158 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+ ++.|++++|++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~  175 (183)
T 3kkq_A           96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  175 (183)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence            999999999999999999987766667899999999999976 6788899999999999999999999 99999999999


Q ss_pred             HHHHHHh
Q psy11135        159 LVREIKK  165 (191)
Q Consensus       159 i~~~~~~  165 (191)
                      |.+.+.+
T Consensus       176 l~~~i~~  182 (183)
T 3kkq_A          176 LVRVIRQ  182 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=4.4e-35  Score=200.98  Aligned_cols=168  Identities=83%  Similarity=1.223  Sum_probs=141.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|.+|||||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..++..+|++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            67899999999999999999999998887777777777777777788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |||+++.+++..+..|+..+.......+.|+++|+||+|+....+..+++.++++.++++++++|++++.|+++++++|.
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  178 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV  178 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999888776665679999999999998777788999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q psy11135        161 REIKKDKM  168 (191)
Q Consensus       161 ~~~~~~~~  168 (191)
                      +.+.+.+.
T Consensus       179 ~~~~~~~~  186 (190)
T 3con_A          179 REIRQYRM  186 (190)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99876544

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4.6e-35  Score=196.28  Aligned_cols=165  Identities=81%  Similarity=1.194  Sum_probs=149.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|+|||||++++.+..+...+.++...........++..+.+.+||+||++++...+..++..+|++++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            78999999999999999999999999887777777777666777788888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      +||+++++++..+..|+..+.......+.|+++|+||+|+.......++..++++.++++++++|++++.|+++++++|.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999988876655679999999999998877788899999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=209.27  Aligned_cols=168  Identities=33%  Similarity=0.565  Sum_probs=143.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV  102 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence            57999999999999999999999999888888888776666666777788899999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus       103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  182 (201)
T 3oes_A          103 YSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI  182 (201)
T ss_dssp             EETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999988766666899999999999875 66788899999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+.+....
T Consensus       183 ~~i~~~~~~  191 (201)
T 3oes_A          183 QEIARVENS  191 (201)
T ss_dssp             HHHHHC---
T ss_pred             HHHHhhhhh
Confidence            998765433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=197.84  Aligned_cols=167  Identities=31%  Similarity=0.528  Sum_probs=133.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--HHHHHHhhcccCCEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--YSAMRDQYMRTGEGF   78 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~   78 (191)
                      ++.+||+++|++|||||||++++.+..+...+.++..+.......+++..+.+.+|||||++.  +......+++.++++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            468999999999999999999999888655544443455556667888888899999999987  567778889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ++|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++..++++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999999998887754456789999999999976 56778888899999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy11135        158 TLVREIKKDK  167 (191)
Q Consensus       158 ~i~~~~~~~~  167 (191)
                      +|.+.+.+.+
T Consensus       162 ~l~~~~~~~~  171 (175)
T 2nzj_A          162 GVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999886543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=4.2e-35  Score=200.32  Aligned_cols=168  Identities=55%  Similarity=0.932  Sum_probs=151.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+.+||+++|.+|+|||||++++.+..+...+.+++...+.....+++..+.+.+||+||++++...+..++..+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            56799999999999999999999999888888888877777777888888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++|++++.|++++|++|
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  175 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  175 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999999999999988876666899999999999976 4677888999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy11135        160 VREIKKDKM  168 (191)
Q Consensus       160 ~~~~~~~~~  168 (191)
                      .+.+.+.+.
T Consensus       176 ~~~i~~~~~  184 (187)
T 2a9k_A          176 MREIRARKM  184 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.3e-35  Score=200.64  Aligned_cols=166  Identities=56%  Similarity=0.875  Sum_probs=150.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   87 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence            57999999999999999999999998888888888877777777888888899999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  167 (181)
T 2fn4_A           88 FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV  167 (181)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998886655566899999999999976 56778889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+.+
T Consensus       168 ~~~~~~~  174 (181)
T 2fn4_A          168 RAVRKYQ  174 (181)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9987644

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.1e-35  Score=202.48  Aligned_cols=167  Identities=37%  Similarity=0.623  Sum_probs=148.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|+|||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   84 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   84 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence            46899999999999999999999988888888888877777778899888999999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  164 (181)
T 3t5g_A           85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII  164 (181)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999988776667899999999999965 66788999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q psy11135        161 REIKKDKM  168 (191)
Q Consensus       161 ~~~~~~~~  168 (191)
                      +.+.+.+.
T Consensus       165 ~~~~~~~~  172 (181)
T 3t5g_A          165 LEAEKMDG  172 (181)
T ss_dssp             HHHHTC--
T ss_pred             HHHHHhcC
Confidence            99877543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.4e-35  Score=201.62  Aligned_cols=172  Identities=33%  Similarity=0.506  Sum_probs=149.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            5799999999999999999999999877666666653 334556678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |||++++.++..+..|+..+..+....+.|+++|+||+|+....+..+++..+++..+++++++||+++.|++++|++|.
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  173 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999888776555679999999999997777888899999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhh
Q psy11135        161 REIKKDKMLRGKE  173 (191)
Q Consensus       161 ~~~~~~~~~~~~~  173 (191)
                      +.+.+.......+
T Consensus       174 ~~~~~~~~~~~~~  186 (195)
T 1x3s_A          174 EKIIQTPGLWESE  186 (195)
T ss_dssp             HHHHTSGGGTCC-
T ss_pred             HHHHhhhhhhccc
Confidence            9998765544333

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.7e-34  Score=197.21  Aligned_cols=161  Identities=27%  Similarity=0.465  Sum_probs=141.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|.+|||||||++++.+..+...+.++ ...+.....+++..+.+.+|||+|++.+.     +++.+|++++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~   91 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF   91 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence            57899999999999999999999999987777666 44445677889999999999999998876     6778999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---CCccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~  156 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.   ...+..+++..++..++ ++++++||++|.|++++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf  171 (184)
T 3ihw_A           92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF  171 (184)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999998776444678999999999984   36688899999999997 899999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy11135        157 YTLVREIKKDK  167 (191)
Q Consensus       157 ~~i~~~~~~~~  167 (191)
                      ++|.+.+.+.+
T Consensus       172 ~~l~~~i~~~~  182 (184)
T 3ihw_A          172 QDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=9.9e-35  Score=195.05  Aligned_cols=164  Identities=32%  Similarity=0.508  Sum_probs=123.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++.+...... .++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            368999999999999999999987664322 3344445556677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.......+.|+++|+||+|+.+ ..+..++...++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999988765567899999999999976 66788889999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-34  Score=199.45  Aligned_cols=165  Identities=40%  Similarity=0.709  Sum_probs=148.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+||+||+++ ...+..++..+|++++|
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv  105 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLV  105 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEE
Confidence            47999999999999999999999999887888888777766677888889999999999988 77788889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~i  159 (191)
                      ||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++. |++++|++|
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l  185 (196)
T 2atv_A          106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  185 (196)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence            99999999999999998888766667899999999999976 5678889999999999999999999999 999999999


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      .+.+.+.+
T Consensus       186 ~~~i~~~~  193 (196)
T 2atv_A          186 CREVRRRR  193 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99887644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=3.2e-34  Score=194.71  Aligned_cols=162  Identities=22%  Similarity=0.422  Sum_probs=138.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|||||||++++.+..+.. +.++..+.+.....+++..+.+.+|||||+++     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            468999999999999999999999988765 66777777677777888889999999999887     456788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCC---CCccCHHHHHHHHHHc-CCCEEEeccCCCCCHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~  154 (191)
                      |||+++++++..+..|+..+.....  .++.|+++|+||+|+.   ...+..+++.++++.. +++++++||++|.|+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            9999999999999998766654332  3578999999999984   3567888899998886 68999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy11135        155 AFYTLVREIKKDKM  168 (191)
Q Consensus       155 l~~~i~~~~~~~~~  168 (191)
                      +|++|.+.+.+.+.
T Consensus       159 lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          159 VFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.1e-34  Score=200.08  Aligned_cols=169  Identities=33%  Similarity=0.554  Sum_probs=144.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.++|+++|++|+|||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   86 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence            478999999999999999999999987777666665 3444555667778889999999999998888889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      |||++++.++..+..|+..+.....   ..+.|+++|+||+|+....+..+++..++. ..+++++++||++|.|++++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (207)
T 1vg8_A           87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  166 (207)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            9999999999999999888766442   146899999999999877778888888887 677899999999999999999


Q ss_pred             HHHHHHHHhhhhhh
Q psy11135        157 YTLVREIKKDKMLR  170 (191)
Q Consensus       157 ~~i~~~~~~~~~~~  170 (191)
                      ++|.+.+.+.+...
T Consensus       167 ~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          167 QTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999998766543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.3e-35  Score=204.38  Aligned_cols=166  Identities=34%  Similarity=0.532  Sum_probs=143.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   87 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   87 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence            57999999999999999999999998888888888877776777888888999999999999998999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc---------cCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135         82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA---------VDMNQAQELAEQFNI-PFIKTSAKTRM  150 (191)
Q Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~~~~-~~~~~s~~~~~  150 (191)
                      ||+++++++..+. .|+..+....  ++.|+++|+||+|+....         +..+++.++++.+++ +++++||++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A           88 FSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence            9999999999987 7888877653  478999999999986532         367888899999996 99999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy11135        151 GVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~~  169 (191)
                      |++++|++|.+.+.+....
T Consensus       166 gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             THHHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHHHHHhhhhhh
Confidence            9999999999999765443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=6.5e-35  Score=203.80  Aligned_cols=166  Identities=23%  Similarity=0.362  Sum_probs=145.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||+|++++...+..+++.+|++++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            45799999999999999999999999988888888887777777788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEec
Q psy11135         81 VFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s  145 (191)
                      |||+++++++.. +..|+..+....  ++.|+++|+||+|+..             +.+..+++..+++.+++ +++++|
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            999999999998 688888887753  5789999999999965             46888999999999999 999999


Q ss_pred             cCCCCC-HHHHHHHHHHHHHhhhh
Q psy11135        146 AKTRMG-VDDAFYTLVREIKKDKM  168 (191)
Q Consensus       146 ~~~~~~-v~~l~~~i~~~~~~~~~  168 (191)
                      |++|.| ++++|++|.+.+.....
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCcccHHHHHHHHHHHHhccCc
Confidence            999998 99999999998876544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-34  Score=197.87  Aligned_cols=164  Identities=31%  Similarity=0.576  Sum_probs=137.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHHHHHhhcccCCEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSAMRDQYMRTGEGF   78 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~   78 (191)
                      ..+||+++|.+|||||||++++.+..  +...+.++..+.+.....+++..+.+.+|||+|++. +..+...+++.++++
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~  115 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY  115 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence            36899999999999999999999644  345554444455566677889888899999999887 556777788899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ++|||++++++++.+..|+..+.......+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|+
T Consensus       116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~  195 (211)
T 2g3y_A          116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE  195 (211)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999988776543345789999999999975 56788888889999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy11135        158 TLVREIKK  165 (191)
Q Consensus       158 ~i~~~~~~  165 (191)
                      +|.+.+..
T Consensus       196 ~l~~~i~~  203 (211)
T 2g3y_A          196 GIVRQVRL  203 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998854

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=198.83  Aligned_cols=163  Identities=32%  Similarity=0.561  Sum_probs=141.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++... ..+++.+|++++|
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv   98 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVV   98 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEE
Confidence            579999999999999999999999998888888888776666778888999999999999887665 5678999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEecc-CCCCCHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSA-KTRMGVDDAFY  157 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~~l~~  157 (191)
                      ||+++++++..+..|+..+.....  ..+.|+++|+||+|+.. ..+..+++.++++.++++++++|| +++.|++++|+
T Consensus        99 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~  178 (187)
T 3c5c_A           99 YSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH  178 (187)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHH
Confidence            999999999999999988876532  25789999999999975 567889999999999999999999 89999999999


Q ss_pred             HHHHHHHh
Q psy11135        158 TLVREIKK  165 (191)
Q Consensus       158 ~i~~~~~~  165 (191)
                      .|.+.+.+
T Consensus       179 ~l~~~i~~  186 (187)
T 3c5c_A          179 EAVREARR  186 (187)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.1e-34  Score=196.82  Aligned_cols=164  Identities=31%  Similarity=0.511  Sum_probs=147.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  101 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC  101 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence            46999999999999999999999999888888888877777788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC---CccCHHHHHHHHHHcCCC-EEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST---WAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+ ..|+..+...  ..+.|+++|+||+|+..   ..+..+++..+++.++++ ++++||++|.|++++|
T Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (194)
T 3reg_A          102 FAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF  179 (194)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence            999999999997 6677777654  35789999999999975   567889999999999998 9999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy11135        157 YTLVREIKKDK  167 (191)
Q Consensus       157 ~~i~~~~~~~~  167 (191)
                      ++|.+.+.+.+
T Consensus       180 ~~l~~~i~~~~  190 (194)
T 3reg_A          180 EKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHCSC
T ss_pred             HHHHHHHHhcC
Confidence            99999887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.9e-34  Score=196.95  Aligned_cols=165  Identities=32%  Similarity=0.505  Sum_probs=145.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+.+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            67899999999999999999999998888788888877777777888999999999999999999888999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEec
Q psy11135         81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s  145 (191)
                      |||++++.++..+. .|+..+....  ++.|+++|+||+|+..             ..+..+++..+++.+++ +++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999987 6777776643  3789999999999865             35677888889999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      |++|.|++++|++|.+.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999886543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=194.83  Aligned_cols=167  Identities=38%  Similarity=0.656  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|++++|
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   95 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   95 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence            58999999999999999999999887776666665 44455667788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++|.
T Consensus        96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           96 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 45789999999999976 56777889999999999999999999999999999999


Q ss_pred             HHHHhhhhhh
Q psy11135        161 REIKKDKMLR  170 (191)
Q Consensus       161 ~~~~~~~~~~  170 (191)
                      +.+.+.....
T Consensus       175 ~~i~~~~~~~  184 (196)
T 3tkl_A          175 AEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHhccc
Confidence            9998765543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=8.5e-34  Score=194.50  Aligned_cols=165  Identities=35%  Similarity=0.584  Sum_probs=141.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-HHHHhhcccCCEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-AMRDQYMRTGEGF   78 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~   78 (191)
                      ++.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            3579999999999999999999999887766666655 3445556678888889999999999988 7888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCC---CCHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTR---MGVDD  154 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~~  154 (191)
                      ++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..++++.+++..+++++++||+++   .|+++
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999999988876567899999999999976 467888899999999999999999999   99999


Q ss_pred             HHHHHHHHHHh
Q psy11135        155 AFYTLVREIKK  165 (191)
Q Consensus       155 l~~~i~~~~~~  165 (191)
                      +|++|.+.+.+
T Consensus       178 l~~~l~~~i~~  188 (189)
T 1z06_A          178 IFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-34  Score=192.72  Aligned_cols=162  Identities=31%  Similarity=0.540  Sum_probs=142.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      |+.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++++...+..+++.+|+++
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            688999999999999999999999998776666666533 3455667888888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC----CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+..    ..+..++...+++..+++++++||+++.|++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999998887653 45789999999999865    457788889999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy11135        156 FYTLVREI  163 (191)
Q Consensus       156 ~~~i~~~~  163 (191)
                      |++|.+.+
T Consensus       160 ~~~l~~~i  167 (170)
T 1ek0_A          160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHH
Confidence            99998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.1e-33  Score=192.98  Aligned_cols=166  Identities=30%  Similarity=0.492  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE--EEEEEcCe---------EEEEEEEeCCChhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGE---------TALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+.  .....++.         .+.+.+|||||++++...+..+
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            589999999999999999999998876666666654433  34445554         6789999999999999999999


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      ++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++..++++++++||+++.
T Consensus        91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  170 (195)
T 3bc1_A           91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGT  170 (195)
T ss_dssp             TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCC
Confidence            999999999999999999999999999888765556899999999999976 5677888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy11135        151 GVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~  168 (191)
                      |++++|++|.+.+.+...
T Consensus       171 ~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          171 NISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999876433

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-33  Score=195.36  Aligned_cols=163  Identities=32%  Similarity=0.522  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT  105 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999887766666655 34445566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|++|.
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          106 YDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887643 45789999999999975 56778888999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       185 ~~i~~~  190 (201)
T 2ew1_A          185 CRLISE  190 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=6.2e-34  Score=191.68  Aligned_cols=164  Identities=28%  Similarity=0.470  Sum_probs=132.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-HHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~   80 (191)
                      .+||+++|++|||||||++++.+........ +++.+.......+++..+.+.+||+||++++.. .+..++..+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998766433332 333455566677889899999999999998876 67777889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            999999999999999999988766556899999999999975 6788899999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.7e-33  Score=189.22  Aligned_cols=164  Identities=32%  Similarity=0.549  Sum_probs=140.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.++|+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||++++...+..++..+|++++
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   85 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   85 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence            3689999999999999999999998877666666653 335566678888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      |||++++.++..+..|+..+.....   ..+.|+++|+||+|+....+..+++..+++ ..+++++++||++|.|++++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (177)
T 1wms_A           86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            9999999999999999988876543   257899999999999877788888998888 567899999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       166 ~~l~~~~~~  174 (177)
T 1wms_A          166 EEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=195.40  Aligned_cols=165  Identities=28%  Similarity=0.467  Sum_probs=139.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-HHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i   79 (191)
                      ..+||+++|.+|||||||++++.+....... ..++.+.......+++..+.+.+|||+|++.+.. ++..++..+|+++
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i  101 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL  101 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence            3689999999999999999999755432222 2333455556667889999999999999987654 7778889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++
T Consensus       102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~  181 (195)
T 3cbq_A          102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  181 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence            9999999999999999998887755445799999999999976 567888899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy11135        159 LVREIKKD  166 (191)
Q Consensus       159 i~~~~~~~  166 (191)
                      |++.+.+.
T Consensus       182 l~~~i~~~  189 (195)
T 3cbq_A          182 AVRQIRLR  189 (195)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=195.25  Aligned_cols=163  Identities=33%  Similarity=0.537  Sum_probs=138.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  108 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA  108 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999887666666655 33355566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. +.+..+++.++++.+++ +++++||+++.|++++|++|
T Consensus       109 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          109 YDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999998887653 45789999999999976 56788899999999999 99999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+.+.
T Consensus       188 ~~~i~~~  194 (201)
T 2hup_A          188 ATELIMR  194 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=197.94  Aligned_cols=165  Identities=31%  Similarity=0.473  Sum_probs=139.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.+++...+......++..+.+.+|||||++++...+..++.++|++++|
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   98 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLC   98 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEE
Confidence            47899999999999999999999888878888888877777777888888899999999999988888999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||+++++++..+. .|+..+....  ++.|+++|+||+|+..             ..+..+++..+++.+++ +++++||
T Consensus        99 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           99 FSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            9999999999987 6888777643  3789999999999864             35678889999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Q psy11135        147 KTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                      +++.|++++|++|.+.+.+.+.
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999876544

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3e-34  Score=195.71  Aligned_cols=165  Identities=32%  Similarity=0.602  Sum_probs=115.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   87 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence            589999999999999999999988776666666553 3344566788888899999999999998889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+... ...+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           88 YDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999888764 335789999999999976 56788899999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q psy11135        161 REIKKDKM  168 (191)
Q Consensus       161 ~~~~~~~~  168 (191)
                      +.+.+...
T Consensus       167 ~~i~~~~~  174 (183)
T 2fu5_C          167 RDIKAKMD  174 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.5e-33  Score=190.71  Aligned_cols=164  Identities=31%  Similarity=0.526  Sum_probs=142.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|.+|+|||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   90 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence            478999999999999999999999987766666655 3444556678888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++.+++.+..|+..+.... .++.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           91 VFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999998887753 35789999999999975 5677888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+.+.
T Consensus       170 ~~~~~~~  176 (181)
T 2efe_B          170 ARRLPRV  176 (181)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhc
Confidence            8877553

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.1e-33  Score=190.48  Aligned_cols=164  Identities=34%  Similarity=0.612  Sum_probs=138.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|++|+|||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            368999999999999999999999887666666655 3334555667778889999999999988888889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+....+..+++..+++.++++++++||+++.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998887643 3578999999999997677888899999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3.4e-33  Score=189.60  Aligned_cols=162  Identities=30%  Similarity=0.522  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence            689999999999999999999999887777666653 3345566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ..+..++++++++.++++++++||+++.|++++|++|.
T Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A           95 YDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887643 35789999999999975 56778889999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       174 ~~i~~  178 (179)
T 1z0f_A          174 KKIYQ  178 (179)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            87753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1e-33  Score=190.60  Aligned_cols=162  Identities=31%  Similarity=0.580  Sum_probs=141.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++++...+..++..+|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence            57999999999999999999999988766666665533 34456678888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.... .+..|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|+++++++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999998887643 35789999999999865 5667888899999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        160 VREIK  164 (191)
Q Consensus       160 ~~~~~  164 (191)
                      .+.+.
T Consensus       164 ~~~~~  168 (170)
T 1r2q_A          164 AKKLP  168 (170)
T ss_dssp             HHTSC
T ss_pred             HHHHh
Confidence            87654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.8e-33  Score=191.27  Aligned_cols=164  Identities=30%  Similarity=0.512  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   89 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   89 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999987766666655 33445566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A           90 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988876643 35789999999999965 56778889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+..
T Consensus       169 ~~~~~~~  175 (186)
T 2bme_A          169 RKILNKI  175 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-33  Score=189.16  Aligned_cols=164  Identities=31%  Similarity=0.608  Sum_probs=133.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.+||+++|.+|+|||||++++.+..+. ..+.++....+ ......++..+.+.+|||||++++...+..++..+|+++
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   88 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   88 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEE
Confidence            4789999999999999999999998864 34555555333 344467888888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A           89 LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988876533 5789999999999986 556788889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy11135        159 LVREIKKD  166 (191)
Q Consensus       159 i~~~~~~~  166 (191)
                      |.+.+.+.
T Consensus       168 l~~~~~~~  175 (180)
T 2g6b_A          168 IAKELKRR  175 (180)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99988653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=197.52  Aligned_cols=164  Identities=29%  Similarity=0.511  Sum_probs=124.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC  112 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence            57999999999999999999999888877777777777667777888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||+++++++..+. .|+..+....  .+.|+++|+||+|+...             .+..+++..+++.+++ +++++||
T Consensus       113 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          113 FDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            9999999999986 6877776643  47899999999999763             4677888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy11135        147 KTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ++|.|++++|++|.+.+.+.+
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=193.31  Aligned_cols=161  Identities=32%  Similarity=0.542  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+||+||++++...+..+++.+|++++||
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   97 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   97 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence            58999999999999999999999988888888887777666777888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135         83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK  147 (191)
Q Consensus        83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~  147 (191)
                      |+++++++..+. .|+..+....  ++.|+++|+||+|+..             +.+..+++..+++.+++ +++++||+
T Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           98 SVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            999999999987 7888777643  4789999999999976             25778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy11135        148 TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~~~  165 (191)
                      +|.|++++|++|.+.+..
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=191.39  Aligned_cols=167  Identities=33%  Similarity=0.514  Sum_probs=143.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   88 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   88 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence            58999999999999999999998887666666555 34445566788888899999999999998999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+....  ++.|+++|+||+|+.. ..+..++...++...+++++++||++|.|++++|++|.
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (181)
T 3tw8_B           89 YDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT  166 (181)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998887643  4789999999999876 45678889999999999999999999999999999999


Q ss_pred             HHHHhhhhhhh
Q psy11135        161 REIKKDKMLRG  171 (191)
Q Consensus       161 ~~~~~~~~~~~  171 (191)
                      +.+.+.+..+.
T Consensus       167 ~~~~~~~~~~~  177 (181)
T 3tw8_B          167 ELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhhhhh
Confidence            99987655443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.9e-33  Score=193.09  Aligned_cols=164  Identities=32%  Similarity=0.547  Sum_probs=140.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   99 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   99 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence            478999999999999999999999887666666555 3344556778888889999999999998888899999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus       100 v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  178 (191)
T 2a5j_A          100 VYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  178 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999998887643 45789999999999975 5677888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy11135        160 VREIKKD  166 (191)
Q Consensus       160 ~~~~~~~  166 (191)
                      .+.+.+.
T Consensus       179 ~~~i~~~  185 (191)
T 2a5j_A          179 AKEIYRK  185 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.3e-33  Score=190.18  Aligned_cols=163  Identities=31%  Similarity=0.560  Sum_probs=135.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999887766666665433 3556677888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988876543 24689999999999976 5678888999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=190.93  Aligned_cols=164  Identities=27%  Similarity=0.525  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++.+..+...+.++.+.. .......++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   87 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM   87 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence            5899999999999999999999988776666666533 344556788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           88 YDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998887643 45789999999999976 46778889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+..
T Consensus       167 ~~i~~~~  173 (203)
T 1zbd_A          167 DVICEKM  173 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.8e-33  Score=188.53  Aligned_cols=162  Identities=27%  Similarity=0.513  Sum_probs=141.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++.+.. .......++..+.+.+|||||++++...+..++..+|++++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   84 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence            57999999999999999999999998776666666643 34456678888889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++.++..+..|+..+... ..+..|+++|+||+|+.. ..+..++...+++..+++++++||+++.|+++++++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999998888764 346789999999999976 5677888999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        160 VREIK  164 (191)
Q Consensus       160 ~~~~~  164 (191)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            87653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=198.73  Aligned_cols=166  Identities=31%  Similarity=0.485  Sum_probs=136.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV   92 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV   92 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence            589999999999999999999999877666666553 3344566788888899999999999998999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus        93 ~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           93 YDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             EC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 45789999999999976 56778889999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+.+....
T Consensus       172 ~~i~~~~~~  180 (223)
T 3cpj_B          172 NTIYQKVSK  180 (223)
T ss_dssp             HHHTTCC--
T ss_pred             HHHHHHhhh
Confidence            998764433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2e-33  Score=188.86  Aligned_cols=162  Identities=34%  Similarity=0.553  Sum_probs=142.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+.+|||||++++...+..++..+|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            468999999999999999999999887766666665 4445556678888889999999999988888899999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||++++++++.+..|+..+....  .+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|+++++++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            999999999999999998887654  5789999999999976 5667888999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            987753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=190.30  Aligned_cols=164  Identities=38%  Similarity=0.681  Sum_probs=141.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            47899999999999999999999988777777777766666667788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||++++++++.+..|+..+.... ..++.|+++|+||+|+.. ..+..++...++..++++++++||+++.|+++++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  161 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence            99999999999988888776643 235789999999999875 5677788888999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (172)
T 2erx_A          162 LNLEKR  167 (172)
T ss_dssp             HHTCCS
T ss_pred             HHHHhh
Confidence            876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=7.7e-34  Score=192.74  Aligned_cols=167  Identities=31%  Similarity=0.471  Sum_probs=141.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGF   78 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   78 (191)
                      ++.+||+++|++|||||||++++.+..+...+.++.+ +.......+++ ..+.+.+|||||++++...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4689999999999999999999999887666666665 44455566665 567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCc-EEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVP-MVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      ++|||+++++++..+..|+..+..+.. ....| +++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999888766432 11344 899999999976 567788899999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy11135        156 FYTLVREIKKDK  167 (191)
Q Consensus       156 ~~~i~~~~~~~~  167 (191)
                      |++|.+.+.+.+
T Consensus       164 ~~~l~~~~~~~~  175 (178)
T 2hxs_A          164 FQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhh
Confidence            999999886543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1e-33  Score=193.35  Aligned_cols=162  Identities=27%  Similarity=0.436  Sum_probs=142.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   85 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   85 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence            47899999999999999999999998877777887766666677788888999999999999988889999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEecc
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~  146 (191)
                      ||+++++++..+ ..|+..+....  ++.|+++|+||+|+..             ..+..+++..+++.++ ++++++||
T Consensus        86 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           86 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            999999999998 67877776643  4789999999999973             4578888999999988 69999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHh
Q psy11135        147 K-TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       147 ~-~~~~v~~l~~~i~~~~~~  165 (191)
                      + ++.|++++|+.|.+.+.+
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.7e-33  Score=191.04  Aligned_cols=164  Identities=29%  Similarity=0.525  Sum_probs=142.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      |+++||+++|++|+|||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            5679999999999999999999998887766666665 444556677888888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..++...+++..+++++++||+++.|+++++++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887643 35789999999999875 567788889999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy11135        159 LVREIKK  165 (191)
Q Consensus       159 i~~~~~~  165 (191)
                      |.+.+.+
T Consensus       171 l~~~~~~  177 (179)
T 2y8e_A          171 VAAALPG  177 (179)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHhh
Confidence            9876643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=5.2e-33  Score=190.57  Aligned_cols=163  Identities=31%  Similarity=0.550  Sum_probs=142.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++...+..++..+|++++|
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v  101 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM  101 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence            58999999999999999999999987666666665333 34456678888899999999999888889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..++++++++.++++++++||+++.|++++|++|.
T Consensus       102 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          102 YDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998887653 45789999999999976 55678889999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       181 ~~i~~~  186 (189)
T 2gf9_A          181 DVICEK  186 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=190.91  Aligned_cols=163  Identities=31%  Similarity=0.471  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v  104 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV  104 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence            689999999999999999999998877666666553 3344556778888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus       105 ~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          105 FDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             EETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999988887643 45789999999999976 56778889999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       184 ~~i~~~  189 (193)
T 2oil_A          184 KEIFAK  189 (193)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.1e-33  Score=195.61  Aligned_cols=166  Identities=34%  Similarity=0.539  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCe----------EEEEEEEeCCChhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGE----------TALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      .+||+|+|.+|||||||++++.+..+...+.++.... ......+++.          .+.+.+|||||++++...+..+
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            5899999999999999999999888765555555432 2334455555          6789999999999999999999


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      +..+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..+++.++++.++++++++||+++.
T Consensus       105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~  184 (217)
T 2f7s_A          105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  184 (217)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCC
Confidence            999999999999999999999998887776544436789999999999976 5677888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy11135        151 GVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~  168 (191)
                      |++++|++|.+.+.+...
T Consensus       185 gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          185 NVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999876433

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=193.64  Aligned_cols=164  Identities=31%  Similarity=0.523  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  104 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV  104 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence            68999999999999999999998887666666655 34445566788888899999999999888888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.
T Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          105 YDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998887643 35789999999999975 56778888999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+..
T Consensus       184 ~~i~~~~  190 (200)
T 2o52_A          184 RTILNKI  190 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=193.72  Aligned_cols=163  Identities=33%  Similarity=0.552  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|.+|||||||++++.+..+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|++++|
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM  102 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence            68999999999999999999999887666666655 34445556677788899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus       103 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          103 YDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998887743 45789999999999975 56788889999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.+.
T Consensus       182 ~~i~~~  187 (191)
T 3dz8_A          182 DAICDK  187 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.6e-33  Score=195.72  Aligned_cols=171  Identities=30%  Similarity=0.389  Sum_probs=112.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCcc-ceEEEEEEEcCe--EEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIE-DSYRKQVVIDGE--TALLDILDTAGQEEYSAMRDQYMRTGE   76 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~   76 (191)
                      +.++|+++|.+|||||||++++.+.  .+...+.++++ +.......+++.  .+.+.+|||||++++...+..++..+|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            3689999999999999999999988  66667767765 444555667776  788999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC--CccCHHHHHHHHHHcCCCEEEeccCC-CCC
Q psy11135         77 GFLLVFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST--WAVDMNQAQELAEQFNIPFIKTSAKT-RMG  151 (191)
Q Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~  151 (191)
                      ++++|||++++.++..+..|+..+.....  ..+.|+++|+||+|+..  ..+..+++..+++.++++++++||++ +.|
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g  178 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD  178 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence            99999999999999999999998877544  25789999999999976  56778899999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhh
Q psy11135        152 VDDAFYTLVREIKKDKMLRGK  172 (191)
Q Consensus       152 v~~l~~~i~~~~~~~~~~~~~  172 (191)
                      ++++|++|.+.+.+....+.+
T Consensus       179 i~~l~~~i~~~~~~~~~~~~~  199 (208)
T 2yc2_C          179 ADAPFLSIATTFYRNYEDKVA  199 (208)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHH
Confidence            999999999998776554433

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=8.5e-33  Score=190.02  Aligned_cols=166  Identities=31%  Similarity=0.577  Sum_probs=134.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHHHHHhhcccCCEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSAMRDQYMRTGEGF   78 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~   78 (191)
                      ..+||+++|.+|||||||++++.+..  +...+.++..+.+.....+++..+.+.+|||+|.+. .......+++.++++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~   84 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   84 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence            57899999999999999999999643  444444444455566677889988899999999776 444566778889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ++|||++++++++.+..|+..+.......+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|+
T Consensus        85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~  164 (192)
T 2cjw_A           85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFE  164 (192)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHH
Confidence            99999999999999999988877654445789999999999875 55777888888888999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy11135        158 TLVREIKKDK  167 (191)
Q Consensus       158 ~i~~~~~~~~  167 (191)
                      +|.+.+....
T Consensus       165 ~l~~~~~~~~  174 (192)
T 2cjw_A          165 GIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999886543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1e-32  Score=192.41  Aligned_cols=164  Identities=34%  Similarity=0.604  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   99 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV   99 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999887666666655 34445566788888899999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+....+..++...+++.++++++++||+++.|++++|++|.+
T Consensus       100 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A          100 YDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999988887643 34789999999999976778888899999999999999999999999999999999


Q ss_pred             HHHhhh
Q psy11135        162 EIKKDK  167 (191)
Q Consensus       162 ~~~~~~  167 (191)
                      .+.+..
T Consensus       179 ~~~~~~  184 (213)
T 3cph_A          179 LIQEKI  184 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.1e-33  Score=191.41  Aligned_cols=163  Identities=36%  Similarity=0.599  Sum_probs=134.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..++..+|++++
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  106 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL  106 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence            468999999999999999999999887666666655 3334556778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-------CCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-------TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      |||++++.++..+..|+..+... ...+.|+++|+||+|+.       ...+..+++..+++..+++++++||++|.|++
T Consensus       107 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~  185 (199)
T 2p5s_A          107 LYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV  185 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence            99999999999999998887664 33478999999999985       35677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      ++|++|.+.+.+
T Consensus       186 el~~~l~~~i~~  197 (199)
T 2p5s_A          186 EAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-33  Score=191.94  Aligned_cols=163  Identities=32%  Similarity=0.548  Sum_probs=141.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++++...+..++..+|++++
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  101 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI  101 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence            479999999999999999999999987666666666433 4445667788889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++.++++.++++++++||+++.|+++++++|
T Consensus       102 V~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          102 VYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999998887643 45789999999999975 5678889999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       181 ~~~i~~  186 (192)
T 2fg5_A          181 SRQIPP  186 (192)
T ss_dssp             HHTCC-
T ss_pred             HHHHHh
Confidence            887754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-33  Score=194.15  Aligned_cols=162  Identities=27%  Similarity=0.436  Sum_probs=141.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv  106 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC  106 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence            36899999999999999999999998877777777766666667788888999999999999998899999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEecc
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~  146 (191)
                      ||+++++++..+ ..|+..+....  ++.|+++|+||+|+..             ..+..+++..+++.++ ++++++||
T Consensus       107 ~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  184 (205)
T 1gwn_A          107 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence            999999999998 68888776643  4789999999999963             3577888999999988 69999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHh
Q psy11135        147 K-TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       147 ~-~~~~v~~l~~~i~~~~~~  165 (191)
                      + ++.|++++|+.|.+.+.+
T Consensus       185 k~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhh
Confidence            9 689999999999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.5e-33  Score=193.08  Aligned_cols=164  Identities=34%  Similarity=0.546  Sum_probs=137.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |..+||+++|.+|||||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            35789999999999999999999999887777777777666667788888899999999999998888999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEec
Q psy11135         81 VFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s  145 (191)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+...             .+..+++..++...++ +++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            9999999999988 56777776542  47899999999999653             3677788889999987 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.6e-32  Score=189.03  Aligned_cols=161  Identities=32%  Similarity=0.530  Sum_probs=137.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeE------------------------------
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGET------------------------------   50 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------   50 (191)
                      +.+||+|+|++|+|||||++++.+..+...+.++.+..+ .....+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            368999999999999999999999987777767665333 3334444433                              


Q ss_pred             -------EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         51 -------ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        51 -------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                             +.+.+|||||++++...+..++..+|++++|||++++.++..+..|+..+....   ..|+++|+||+|+...
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~  162 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKF  162 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-C
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccc
Confidence                   779999999999999999999999999999999999999999999988887643   3899999999995446


Q ss_pred             ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .+..+++..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999988765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=9e-33  Score=189.90  Aligned_cols=162  Identities=31%  Similarity=0.591  Sum_probs=134.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|+|||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV  105 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV  105 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            68999999999999999999998887666666655 34445566788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||++++.++..+..|+..+... ...+.|+++|+||+|+.. ..+..++++.+++.+ +++++++||++|.|++++|++|
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  184 (192)
T 2il1_A          106 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  184 (192)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999998877664 345789999999999976 567788888998885 7899999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      .+.+.+
T Consensus       185 ~~~i~~  190 (192)
T 2il1_A          185 VDDILK  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.9e-32  Score=189.55  Aligned_cols=161  Identities=32%  Similarity=0.549  Sum_probs=141.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ..+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence            36899999999999999999999998877777777766666677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||+++++++..+ ..|...+....  ++.|+++|+||+|+...             .+..+++..+++..+. +++++||
T Consensus       104 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (201)
T 2gco_A          104 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA  181 (201)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence            999999999998 56777666543  47899999999999763             3677788899999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy11135        147 KTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~  164 (191)
                      ++|.|++++|++|.+.+.
T Consensus       182 ~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          182 KTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.7e-33  Score=193.59  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=139.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ++.+||+++|.+|||||||++++....+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35799999999999999999999999988888888887777777888889889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEec
Q psy11135         81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTS  145 (191)
Q Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s  145 (191)
                      |||++++.++..+. .|+..+....  .+.|+++|+||+|+...             .+..+++..+++.+++ +++++|
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            99999999999997 7877777653  57899999999998653             2677888899999996 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~  163 (191)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.3e-32  Score=185.93  Aligned_cols=165  Identities=33%  Similarity=0.558  Sum_probs=128.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +.++|+++|++|+|||||++++.+..+...+.++.+ +.......++ +..+.+.+||+||++.+...+..+++.+|+++
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   86 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence            478999999999999999999999887766666654 3444444555 55677999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC--CccCHHHHHHHHH-HcCCCEEEeccCCCCCHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST--WAVDMNQAQELAE-QFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~  153 (191)
                      +|||++++.++..+..|+..+.....   ..+.|+++|+||+|+..  ..+..+++.++++ ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (182)
T 1ky3_A           87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  166 (182)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence            99999999999999999988876542   35789999999999954  4467888888888 566899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy11135        154 DAFYTLVREIKKD  166 (191)
Q Consensus       154 ~l~~~i~~~~~~~  166 (191)
                      ++|++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (182)
T 1ky3_A          167 TAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=6.7e-34  Score=193.70  Aligned_cols=161  Identities=34%  Similarity=0.550  Sum_probs=125.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   86 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   86 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEE
Confidence            57899999999999999999999988877777777655544445667777788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc-----------cCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA-----------VDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      ||+++++++..+. .|+..+....  ++.|+++|+||+|+....           +..+++..+++.+++ +++++||++
T Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           87 FSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            9999999999987 6887777653  378999999999986532           367888899999996 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREIK  164 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~  164 (191)
                      |.|++++|++|.+.+.
T Consensus       165 ~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=4.2e-32  Score=187.33  Aligned_cols=163  Identities=13%  Similarity=0.239  Sum_probs=128.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ...||+|+|.+|||||||++++.+..+.. .+.++.+....   .++...+.+.+|||||++++...+..++..+|++++
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   92 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF   92 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999988776 66676663322   234455669999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCC-------CCCcEEEEEecCCCCCCccCHHHHHHH-----HHHcCCCEEEeccCC
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDA-------EEVPMVLVGNKCDLSTWAVDMNQAQEL-----AEQFNIPFIKTSAKT  148 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~  148 (191)
                      |||+++++++..+..|+..+......       .+.|+++|+||+|+.......+....+     ++..+++++++||++
T Consensus        93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  172 (199)
T 4bas_A           93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK  172 (199)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred             EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence            99999999999999998887654211       378999999999997642222222222     244678899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy11135        149 RMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~~~  167 (191)
                      +.|++++|++|.+.+.+..
T Consensus       173 g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          173 GTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TBTHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHHHh
Confidence            9999999999999987654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.98  E-value=1.8e-31  Score=178.77  Aligned_cols=157  Identities=17%  Similarity=0.295  Sum_probs=122.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|++|||||||++++.+..+.. +.||.+.. ...  ++...+.+.+|||||++++...+..++..+|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999877654 34454422 222  33344568999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-HH----HHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-LA----EQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +++++++..+..|+..+.......+.|+++|+||+|+... ...++... +.    +..+++++++||++|.|++++|++
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            9999999999999888776444567899999999999763 22232222 11    123457999999999999999999


Q ss_pred             HHHHHHh
Q psy11135        159 LVREIKK  165 (191)
Q Consensus       159 i~~~~~~  165 (191)
                      |.+.+.+
T Consensus       156 l~~~i~~  162 (164)
T 1r8s_A          156 LSNQLRN  162 (164)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            9987754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=4.2e-32  Score=189.99  Aligned_cols=167  Identities=25%  Similarity=0.448  Sum_probs=139.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE--cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      ..+||+++|.+|||||||++++.+..+...+.++.+.........  ++..+.+.+|||||++.+...+..++..+|+++
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            479999999999999999999998887766666666443333322  234478999999999998888889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +|||+++..++..+..|+..+.... ..+.|+++|+||+|+... .+..++...+++..+++++++||++|.|++++|++
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           90 LFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887653 345899999999999874 67888888999999999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q psy11135        159 LVREIKKDKML  169 (191)
Q Consensus       159 i~~~~~~~~~~  169 (191)
                      |.+.+.+....
T Consensus       169 l~~~~~~~~~~  179 (218)
T 4djt_A          169 LARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHCCTTC
T ss_pred             HHHHHhccccc
Confidence            99998765443

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=1.4e-31  Score=183.39  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=127.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+|+|.+|||||||++++.+..+...+.++.+..+..   ++...+.+.+|||||++++...+..++..+|++++|
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   97 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence            47999999999999999999999988776666666644332   233355689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++.....     ...+++++++||++|.|++++|
T Consensus        98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  176 (188)
T 1zd9_A           98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  176 (188)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence            9999999999999998887664444678999999999997632 223222211     1234579999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       177 ~~l~~~~~~  185 (188)
T 1zd9_A          177 QWLIQHSKS  185 (188)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHHh
Confidence            999887654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.98  E-value=3.6e-31  Score=181.64  Aligned_cols=156  Identities=19%  Similarity=0.310  Sum_probs=126.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++.+..+. .+.++.+.. .....+++  +.+.+|||||++++...+..+++.+|++++|
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            4689999999999999999999988764 344444443 34455666  5689999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------------cCCCEEEeccCCC
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------------FNIPFIKTSAKTR  149 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~~  149 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. .+..++..+....            .+++++++||++|
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  176 (190)
T 1m2o_B           98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  176 (190)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred             EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence            99999999999999998887654446799999999999976 5566666655432            3467999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy11135        150 MGVDDAFYTLVRE  162 (191)
Q Consensus       150 ~~v~~l~~~i~~~  162 (191)
                      .|++++|++|.+.
T Consensus       177 ~gi~~l~~~l~~~  189 (190)
T 1m2o_B          177 NGYLEAFQWLSQY  189 (190)
T ss_dssp             BSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1.2e-31  Score=184.69  Aligned_cols=161  Identities=19%  Similarity=0.271  Sum_probs=129.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-----------CccceE-EEEE-EEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-----------TIEDSY-RKQV-VIDGETALLDILDTAGQEEYSAMRD   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~   69 (191)
                      .+||+++|.+|||||||++.+.+.. ...+.+           +.+..+ .... .+++..+.+.+|||||++++...+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   92 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK   92 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence            6899999999999999997776544 333222           221111 1111 3456778899999999999999999


Q ss_pred             hhcccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEE
Q psy11135         70 QYMRTGEGFLLVFAVN------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFI  142 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~  142 (191)
                      .+++.+|++++|||++      +.+++..+..|+..+..  ...+.|+++|+||+|+.. .+..+++.++++.+++ +++
T Consensus        93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~  169 (198)
T 3t1o_A           93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD-ALPVEMVRAVVDPEGKFPVL  169 (198)
T ss_dssp             HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT-CCCHHHHHHHHCTTCCSCEE
T ss_pred             HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc-ccCHHHHHHHHHhcCCceEE
Confidence            9999999999999999      56677777777766632  346789999999999976 4788899999999999 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ++||++|.|++++|++|.+.+.+..
T Consensus       170 ~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          170 EAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCcCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.98  E-value=6.5e-31  Score=179.63  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=128.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|||||||++++.+.. ...+.++.+.. ......++  +.+.+|||||++++...+..+++.+|++++|
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   92 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            47899999999999999999999887 55555665533 33344444  5589999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+... ...++..+...     ..+++++++||+++.|+++++
T Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (186)
T 1ksh_A           93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  171 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence            999999999999999888876544567899999999999763 23333332221     345689999999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      ++|.+.+.+.
T Consensus       172 ~~l~~~i~~~  181 (186)
T 1ksh_A          172 DWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=1.3e-31  Score=184.89  Aligned_cols=156  Identities=18%  Similarity=0.299  Sum_probs=121.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|||||||++++.+..+. .+.++.+.. .....+++  +.+.+|||||++++...+..+++.+|++++|
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            5789999999999999999999887753 344444433 23455666  5689999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----------------cCCCEEEe
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----------------FNIPFIKT  144 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  144 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. .+..+++.++...                 .+++++++
T Consensus       100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (198)
T 1f6b_A          100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC  178 (198)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence            99999999999999998887654446799999999999976 5677777766553                 24579999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy11135        145 SAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~  162 (191)
                      ||++|.|++++|++|.+.
T Consensus       179 SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          179 SVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             BTTTTBSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=3e-32  Score=191.17  Aligned_cols=165  Identities=27%  Similarity=0.496  Sum_probs=140.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|.+|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+|++++
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   93 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   93 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence            579999999999999999999776665555555554 4444556678888899999999999998888999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |||++++.++..+..|+..+....  .+.|+++|+||+|+....... +...+++..+++++++||++|.|++++|++|.
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  170 (221)
T 3gj0_A           94 MFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  170 (221)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988753  478999999999998755443 56678888899999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+......
T Consensus       171 ~~l~~~~~~  179 (221)
T 3gj0_A          171 RKLIGDPNL  179 (221)
T ss_dssp             HHHHTCTTC
T ss_pred             HHHHhCccc
Confidence            998776543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.4e-30  Score=175.50  Aligned_cols=160  Identities=19%  Similarity=0.240  Sum_probs=126.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|+|||||++++.+..+.. +.++.+. ......++  ...+.+|||||++++...+..+++.+|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            46899999999999999999999888643 3444442 23334455  45589999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HH----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-EL----AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++.. .+    +...+++++++||+++.|++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  160 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence            9999999999998888887664444678999999999997632 222222 22    22345689999999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      ++|.+.+.+.
T Consensus       161 ~~l~~~i~~~  170 (171)
T 1upt_A          161 EWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            9999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.2e-31  Score=181.38  Aligned_cols=162  Identities=18%  Similarity=0.257  Sum_probs=125.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|.+|||||||++++.+..+. .+.++.+.. .....+++  +.+.+|||||++++...+..++..+|++++|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            5789999999999999999999988765 445555422 23344554  5689999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++..+...     ..+++++++||++|.|+++++
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  169 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC-CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence            99999999999999998887654446789999999999975 334444443332     345689999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy11135        157 YTLVREIKKDKM  168 (191)
Q Consensus       157 ~~i~~~~~~~~~  168 (191)
                      ++|.+.+.+...
T Consensus       170 ~~l~~~~~~~~~  181 (187)
T 1zj6_A          170 EWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHCC---
T ss_pred             HHHHHHHHHHhh
Confidence            999998865443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=178.94  Aligned_cols=160  Identities=18%  Similarity=0.267  Sum_probs=128.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.+||+++|.+|||||||++++.+.. +...+.++.+ .......+++  +.+.+|||||++++...+..++..+|++++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIF   96 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            57899999999999999999999877 4555555555 3333444554  458999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDA--EEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  153 (191)
                      |||+++++++..+..|+..+......  .+.|+++|+||+|+.. ....++..+...     ..+++++++||+++.|++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  175 (190)
T 2h57_A           97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD-AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQ  175 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc-CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHH
Confidence            99999999999999998888765433  5789999999999975 345555555543     235789999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      ++|++|.+.+.+
T Consensus       176 ~l~~~l~~~i~~  187 (190)
T 2h57_A          176 EGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH
Confidence            999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.4e-30  Score=177.43  Aligned_cols=159  Identities=23%  Similarity=0.281  Sum_probs=122.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|||||||++++.+..+. .+.++.+. .......+  .+.+.+|||||++.+...+..++..+|++++|
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4689999999999999999999877542 33344442 22334445  35689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++..+..     ...+++++++||++|.|++++|
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (181)
T 1fzq_A           91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (181)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence            9999999999998888877654344678999999999997632 333332221     1234579999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       170 ~~l~~~~~~  178 (181)
T 1fzq_A          170 NWVCKNVNA  178 (181)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHHHHh
Confidence            999887754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.1e-30  Score=179.53  Aligned_cols=158  Identities=17%  Similarity=0.298  Sum_probs=118.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++.+..+.. +.+|.+ ........+  .+.+.+|||||++++...+..++..+|++++|
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv  103 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  103 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            57999999999999999999998877653 334444 222223333  45689999999999988999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-HH----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-LA----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+... ...++... +.    +..+++++++||++|.|++++|
T Consensus       104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  182 (192)
T 2b6h_A          104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL  182 (192)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence            999999999999999888876544467899999999999763 22222221 11    1234579999999999999999


Q ss_pred             HHHHHHHH
Q psy11135        157 YTLVREIK  164 (191)
Q Consensus       157 ~~i~~~~~  164 (191)
                      ++|.+.+.
T Consensus       183 ~~l~~~i~  190 (192)
T 2b6h_A          183 DWLSHELS  190 (192)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=4e-30  Score=190.37  Aligned_cols=161  Identities=32%  Similarity=0.521  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .++|+++|.+|+|||||++++.+..+...+.+++...+.....+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~  234 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF  234 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEE
Confidence            58999999999999999999999988888888888777777788899989999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135         83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK  147 (191)
Q Consensus        83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~  147 (191)
                      |++++.++..+. .|+..+....  .+.|+++|+||+|+..             ..+..+++..+++..++ +++++||+
T Consensus       235 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          235 SLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            999999999887 6777776643  3789999999999854             35778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy11135        148 TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~~~  165 (191)
                      +|.|++++|+.|.+.+..
T Consensus       313 ~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.7e-33  Score=193.48  Aligned_cols=162  Identities=39%  Similarity=0.694  Sum_probs=130.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+|+|.+|||||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV  112 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999998887666555554 44455667788888899999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+... ...+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus       113 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          113 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             C-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999888664 335789999999999976 44566677889999999999999999999999999998


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       192 ~~l~~  196 (199)
T 3l0i_B          192 AEIKK  196 (199)
T ss_dssp             TTTTT
T ss_pred             HHHHH
Confidence            77654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.5e-30  Score=177.23  Aligned_cols=156  Identities=17%  Similarity=0.256  Sum_probs=123.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+ ..+.++.+... ....+++  +.+.+|||||++++...+..++..+|++++|
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   95 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   95 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            579999999999999999999998887 34444444332 3344555  5689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++..+..     ...+++++++||++|.|++++|
T Consensus        96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  174 (181)
T 2h17_A           96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  174 (181)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc-CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence            99999999999999988887644346789999999999976 23344443332     2235689999999999999999


Q ss_pred             HHHHHH
Q psy11135        157 YTLVRE  162 (191)
Q Consensus       157 ~~i~~~  162 (191)
                      ++|.+.
T Consensus       175 ~~l~~~  180 (181)
T 2h17_A          175 EWMMSR  180 (181)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.6e-33  Score=193.59  Aligned_cols=160  Identities=33%  Similarity=0.556  Sum_probs=136.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.+..+...+.+++.+.+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  108 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC  108 (204)
Confidence            46899999999999999999999888777777777766666667778888889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135         82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA  146 (191)
Q Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~  146 (191)
                      ||+++++++..+. .|+..+....  .+.|+++|+||+|+...             .+..+++..+++.+++ +++++||
T Consensus       109 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          109 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            9999999999887 6766665532  37899999999999752             4555667788888887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy11135        147 KTRMGVDDAFYTLVREI  163 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~  163 (191)
                      ++|.|++++|++|.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=4.2e-29  Score=172.47  Aligned_cols=164  Identities=34%  Similarity=0.544  Sum_probs=138.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..++..++++++|
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   84 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   84 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence            58999999999999999999999887666666654 33345667888888899999999998888888888899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++..++..+..|+..+... ...+.|+++|+||+|+.. .....+++..++...++.++++|++++.+++++++.|.
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           85 YDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999998888888776553 234689999999999976 55677888999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+..
T Consensus       164 ~~~~~~~  170 (199)
T 2f9l_A          164 TEIYRIV  170 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.7e-30  Score=178.02  Aligned_cols=161  Identities=16%  Similarity=0.223  Sum_probs=126.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|++|||||||++++....+.. +.++.+.. ......++  +.+.+|||||++++...+..+++.+|++++|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            57999999999999999999998777643 34444422 23344443  5589999999998888888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-H----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-L----AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++... +    +...+++++++||+++.|+++++
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (189)
T 2x77_A           97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM  175 (189)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence            9999999999999888887765455689999999999997632 2222222 1    12234579999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy11135        157 YTLVREIKKDK  167 (191)
Q Consensus       157 ~~i~~~~~~~~  167 (191)
                      ++|.+.+.+..
T Consensus       176 ~~l~~~i~~~~  186 (189)
T 2x77_A          176 DWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcc
Confidence            99999887643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.2e-30  Score=176.50  Aligned_cols=160  Identities=15%  Similarity=0.242  Sum_probs=123.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.++|+++|++|||||||++++.+..+ ..+.++.+.. .....+++  ..+.+|||||++++...+..++..+|++++|
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            579999999999999999999997776 3444454422 23344554  5589999999999888889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+... ...++..+....     .+++++++||+++.|+++++
T Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (183)
T 1moz_A           93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA-LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL  171 (183)
T ss_dssp             EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence            999999999999999888876544568999999999999763 334444333221     23579999999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      ++|.+.+.+.
T Consensus       172 ~~l~~~~~~~  181 (183)
T 1moz_A          172 DWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=5e-30  Score=176.72  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=119.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHH---HhhcccCCE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMR---DQYMRTGEG   77 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~~~   77 (191)
                      +.+||+++|.+|||||||++++.+....................+ ++..+.+.+|||||++++....   ..+++.+|+
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA   98 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence            478999999999999999998877543322111111111222223 3566779999999999887666   788999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------CccCHHHHHHHHH----HcCCCEEE
Q psy11135         78 FLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------WAVDMNQAQELAE----QFNIPFIK  143 (191)
Q Consensus        78 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~----~~~~~~~~  143 (191)
                      +++|||++++  +++..+..|+..+...  .++.|+++|+||+|+..        +.+..++...+++    ..++++++
T Consensus        99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e  176 (196)
T 3llu_A           99 LIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL  176 (196)
T ss_dssp             EEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred             EEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence            9999999997  6777777777766432  35789999999999865        2344455677777    67889999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q psy11135        144 TSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~  163 (191)
                      +||++ .|++++|+.|++.+
T Consensus       177 ~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          177 TSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             ECTTS-THHHHHHHHHHHHT
T ss_pred             EEech-hhHHHHHHHHHHHh
Confidence            99999 99999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=1.1e-28  Score=172.07  Aligned_cols=159  Identities=18%  Similarity=0.279  Sum_probs=115.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCe-EEEEEEEeCCChhhHHH-HHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TALLDILDTAGQEEYSA-MRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i   79 (191)
                      +.+||+++|++|||||||++++.+..+...+.++......  ..+++. .+.+.+|||||++++.. .+..++..+|+++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            5789999999999999999999998887777655433322  455543 56799999999999987 7888899999999


Q ss_pred             EEEeCCChh-hHHHHHHHHHHHHhh--cCCCCCcEEEEEecCCCCCCccCHHHHHHHHH---------------------
Q psy11135         80 LVFAVNSMK-SFEDIGSYREQIKRV--KDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE---------------------  135 (191)
Q Consensus        80 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---------------------  135 (191)
                      +|||+++.+ ++.....++..+...  ....+.|+++|+||+|+.......+....+.+                     
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~  163 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST  163 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence            999999854 455555555444322  23457899999999999763322111111111                     


Q ss_pred             ---------------Hc--CCCEEEeccCCC------CCHHHHHHHHHHH
Q psy11135        136 ---------------QF--NIPFIKTSAKTR------MGVDDAFYTLVRE  162 (191)
Q Consensus       136 ---------------~~--~~~~~~~s~~~~------~~v~~l~~~i~~~  162 (191)
                                     .+  +++|+++||++|      .|++++|++|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                           11  567999999999      9999999999765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=3e-30  Score=176.16  Aligned_cols=164  Identities=22%  Similarity=0.324  Sum_probs=118.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCccceEE-EEEEE---cCeEEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIEDSYR-KQVVI---DGETALLDILDTAGQEEYSAMRDQYMRTGE   76 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   76 (191)
                      .+||+++|++|||||||++++.+.  .+...+.++.+..+. .....   ++..+.+.+|||+|++++...+..++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            689999999999999999999985  344445555543322 22222   235667899999999999888888899999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC----HHHHHHHHHHcCCC----EEEeccC
Q psy11135         77 GFLLVFAVNSM-KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD----MNQAQELAEQFNIP----FIKTSAK  147 (191)
Q Consensus        77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~----~~~~s~~  147 (191)
                      ++++|||++++ .++..+..|+..+....  ++.|+++|+||+|+......    .+....+++.++++    ++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 57888999998876542  46899999999998752211    23345566667776    9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHhhhh
Q psy11135        148 TRM-GVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       148 ~~~-~v~~l~~~i~~~~~~~~~  168 (191)
                      ++. +++++++.|.+.+.+.+.
T Consensus       160 ~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          160 EESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHCC--
T ss_pred             cCchhHHHHHHHHHHHHhcccc
Confidence            997 999999999988876443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=2.4e-29  Score=168.84  Aligned_cols=153  Identities=16%  Similarity=0.267  Sum_probs=113.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR   73 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~   73 (191)
                      |++++|+++|++|||||||++++.+..+.....++ +.+........++.  .+.+|||||+.++.      .....++.
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            78999999999999999999999987643333232 23333344455554  58899999987653      34455554


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         74 --TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                        .++++++++|+++.+.   ...|+..+..    .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~SA~~~~  150 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  150 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChh-hHHHHHHHHhCCCEEEEEcCCCC
Confidence              7999999999998654   3456655544    2689999999999864 2333 24677888889999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREI  163 (191)
Q Consensus       151 ~v~~l~~~i~~~~  163 (191)
                      |++++|++|.+.+
T Consensus       151 ~v~~l~~~l~~~~  163 (165)
T 2wji_A          151 GIEELKKAISIAV  163 (165)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=183.49  Aligned_cols=159  Identities=17%  Similarity=0.293  Sum_probs=119.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+|+|.+|||||||++++.+..+.... +|.... ...  ++...+.+.+|||||++.+...+..++..+|++++|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEE--EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999988765443 333322 222  333445689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHHH----HcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELAE----QFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++++++..+..++..+.......+.|+++|+||+|+.... ..++.. .+..    ..+++++++||++|.|++++|
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~  318 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  318 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence            9999999999999888887665555689999999999997633 222222 2211    124569999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       319 ~~l~~~l~~  327 (329)
T 3o47_A          319 DWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=1.5e-28  Score=179.94  Aligned_cols=164  Identities=20%  Similarity=0.299  Sum_probs=127.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-----HHHHHhhccc
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-----SAMRDQYMRT   74 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~   74 (191)
                      ..+||+++|.+|||||||++++.+..  .......++.........+++ .+.+.+|||||++++     ...+..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            47899999999999999999999874  333333333333333344444 567999999999988     5678888899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC--Cc-----cCHHHHHHHHHHcC---CCEEE
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST--WA-----VDMNQAQELAEQFN---IPFIK  143 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~--~~-----~~~~~~~~~~~~~~---~~~~~  143 (191)
                      +|++++|||++++++++.+..|...+.... ..++.|+++|+||+|+..  ..     +..+++.++++.+|   +++++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999998877755543321 245789999999999976  22     45577888999987   78999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        144 TSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      +||++ .++.++|..+++.+.+..
T Consensus       161 tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             eeecC-ChHHHHHHHHHHHHcCCH
Confidence            99999 899999999888765543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=1.2e-27  Score=164.18  Aligned_cols=160  Identities=34%  Similarity=0.552  Sum_probs=136.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++|+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|+.++...+..++..++++++|
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v  108 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV  108 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence            4899999999999999999999998776666666633 355667888888889999999988888888888899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++..+++.+..|+..+... .....|+++++||+|+.. .....+++..++...++.++++|++++.+++++++.|.
T Consensus       109 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          109 YDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999988888888776553 234689999999999976 55677889999999999999999999999999999998


Q ss_pred             HHH
Q psy11135        161 REI  163 (191)
Q Consensus       161 ~~~  163 (191)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=2.2e-27  Score=167.15  Aligned_cols=165  Identities=19%  Similarity=0.211  Sum_probs=116.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCCh------hh----HHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ------EE----YSAMRDQ   70 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------~~----~~~~~~~   70 (191)
                      +.++|+|+|.+|||||||++++.+..+. .....++..........++  ..+.+|||||+      +.    +.. ...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~  104 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA  104 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence            3689999999999999999999988753 2222233333333333343  45889999998      33    222 334


Q ss_pred             hcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHH---HHHHHHHHcC--CCEE
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMN---QAQELAEQFN--IPFI  142 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~---~~~~~~~~~~--~~~~  142 (191)
                      ++..+|++++|||++++.++.  ....|+..+...  ..+.|+++|+||+|+.. ..+..+   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            577889999999999987754  223455544432  24789999999999976 344443   4566777777  8999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKDKMLRG  171 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~~~~~~  171 (191)
                      ++||++|.|++++|++|.+.+.+.+...+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~~~  211 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQAESI  211 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987665433

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.96  E-value=2.2e-28  Score=167.44  Aligned_cols=158  Identities=20%  Similarity=0.268  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC-----------hhhHHHHHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG-----------QEEYSAMRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~   72 (191)
                      +||+++|++|||||||++++.+..+...+.++..... .....+    .+.+|||||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999998886655555433221 122233    478999999           677788888887


Q ss_pred             cc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC--
Q psy11135         73 RT-GEGFLLVFAVNSMKSFEDI-GSYREQ--------IKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP--  140 (191)
Q Consensus        73 ~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  140 (191)
                      .. +++++++|++.+..++..+ ..|...        +.......+.|+++|+||+|+....  .++..++++.++.+  
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~  154 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLS  154 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGG
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhh
Confidence            77 7877777888777777766 445432        2222223578999999999997644  56788888888875  


Q ss_pred             -----EEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        141 -----FIKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       141 -----~~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                           ++++||++|.|++++|++|.+.+.+.+.
T Consensus       155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             ccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                 6999999999999999999998876543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.3e-29  Score=179.96  Aligned_cols=162  Identities=25%  Similarity=0.368  Sum_probs=117.0

Q ss_pred             CeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCccCCc-c-ceEE--------------EEEEEcCeEEEE
Q psy11135          2 AEYKLVVVGAG---------GVGKSALTIQLIQ---NHFVDEYDPTI-E-DSYR--------------KQVVIDGETALL   53 (191)
Q Consensus         2 ~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~-~~~~--------------~~~~~~~~~~~~   53 (191)
                      +.+||+++|.+         |||||||++++.+   ..+...+.+++ + +...              ....+++..+.+
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l   97 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM   97 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence            57999999999         9999999999998   45555555554 1 1100              011245677789


Q ss_pred             EEEe-----------------------CCChhhHHHHHHhhcc---------------------cCCEEEEEEeCCCh--
Q psy11135         54 DILD-----------------------TAGQEEYSAMRDQYMR---------------------TGEGFLLVFAVNSM--   87 (191)
Q Consensus        54 ~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~--   87 (191)
                      .+||                       ++|++++...+..++.                     ++|++++|||++++  
T Consensus        98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~  177 (255)
T 3c5h_A           98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN  177 (255)
T ss_dssp             EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred             EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence            9999                       4455555555556665                     79999999999998  


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135         88 KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus        88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ++++.+..|+..+.......+.|+++|+||+|+.... ..++...++.. .+++++++||+++.|++++|++|.+.+.
T Consensus       178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            9999999999888765333578999999999986522 12566777776 4789999999999999999999988764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.1e-27  Score=162.37  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=115.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +.++|+++|.+|||||||++++.+..+...+.++.. +........++..  +.+|||||++++...+..++..+|++++
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            468999999999999999999998886655444333 3333345566655  6789999999988888888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-------cC--CCEEEeccCCCCC
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-------FN--IPFIKTSAKTRMG  151 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~  151 (191)
                      |||+++....... ..+..+.    ..+.|+++|+||+|+...  ..++.......       ++  ++++++||++|.|
T Consensus        85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA--NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS--CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC--CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            9999884322222 1222222    246899999999999752  22333332222       22  5799999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy11135        152 VDDAFYTLVREIKKDKM  168 (191)
Q Consensus       152 v~~l~~~i~~~~~~~~~  168 (191)
                      ++++|++|.+.+...+.
T Consensus       158 v~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          158 LDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhhhhcc
Confidence            99999999998876544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=7e-28  Score=164.75  Aligned_cols=157  Identities=17%  Similarity=0.275  Sum_probs=117.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR   73 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~   73 (191)
                      |+.++|+++|++|||||||++++.+...... .++++.+........++  ..+.+|||||+..+.      .....++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            6789999999999999999999998763322 32223333444445555  458899999987653      44555554


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         74 --TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                        .++++++++|.++   ++....|+..+..    .+.|+++|+||+|+.. ..+. ++..++++.++++++++|++++.
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence              4899999999876   3445566665554    3689999999999865 2222 45678888899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy11135        151 GVDDAFYTLVREIKKDK  167 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~  167 (191)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=3.2e-27  Score=157.48  Aligned_cols=149  Identities=21%  Similarity=0.208  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-------HHHHHHhhccc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-------YSAMRDQYMRT   74 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~   74 (191)
                      .||+++|++|+|||||++++.+...  .....+++.+........++..  +.+|||||+..       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            5899999999999999999998874  3344444444455555566654  78999999886       45566778899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD  153 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  153 (191)
                      +|++++++|++++.+..  ..++......   .+.|+++|+||+|+...   .++..+++ .+++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH---ELYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG---GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc---hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999999854322  2222222221   36899999999998753   23444555 6777 89999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        154 DAFYTLVREI  163 (191)
Q Consensus       154 ~l~~~i~~~~  163 (191)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=3.6e-27  Score=168.59  Aligned_cols=154  Identities=17%  Similarity=0.199  Sum_probs=115.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhc-
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYM-   72 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-   72 (191)
                      ++.++|+++|++|||||||++++.+..+. ..+++++.......+...+  ..+.+|||||+..+..      ....++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            35799999999999999999999987743 3333344343344444444  4589999999875532      334444 


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                       ..+|++++|+|+++.++..   .|...+..    .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence             5899999999999976533   35555544    2689999999999865 2222 34678889999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVREIK  164 (191)
Q Consensus       151 ~v~~l~~~i~~~~~  164 (191)
                      |+++++++|.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.3e-26  Score=159.32  Aligned_cols=154  Identities=19%  Similarity=0.285  Sum_probs=104.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAG----------QEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~   71 (191)
                      .++|+++|.+|+|||||++++.+..+.....++.+... ......++   .+.+|||||          ++.+...+..+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            58999999999999999999998874443333333221 12222333   378999999          77788888888


Q ss_pred             cccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH----HcCCCEEEe
Q psy11135         72 MRTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE----QFNIPFIKT  144 (191)
Q Consensus        72 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~  144 (191)
                      +..+   |++++|+|+++..+..... ++..+..    .+.|+++|+||+|+...........++.+    ..+++++++
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (195)
T 1svi_A          100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             HhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence            7777   9999999999876655432 2222222    46899999999999763322222223322    345789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy11135        145 SAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ||+++.|+++++++|.+.+.
T Consensus       175 Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             EccCCCCHHHHHHHHHHHhc
Confidence            99999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.95  E-value=6.6e-28  Score=173.94  Aligned_cols=156  Identities=13%  Similarity=0.193  Sum_probs=115.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH----------HHHH
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS----------AMRD   69 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~   69 (191)
                      |+.++|+++|.+|||||||+|++.+.... ...++++.+.....+..++..  +.+|||||+.++.          ....
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHH
Confidence            78999999999999999999999988743 333344444445555555554  7889999977644          2233


Q ss_pred             hhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135         70 QYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK  147 (191)
Q Consensus        70 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~  147 (191)
                      .++  ..+|++++|+|+++.+....+   ...+...    +.|+++|+||+|+............+++.++++++++||+
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYL---TLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcC
Confidence            333  689999999999986654433   3333332    6899999999998652222233567888899999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy11135        148 TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~~~  165 (191)
                      +|.|+++++++|.+.+..
T Consensus       152 ~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999877653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=4.4e-28  Score=176.35  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC---CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH---HHHhhcccCCEE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA---MRDQYMRTGEGF   78 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~   78 (191)
                      ||+++|..|||||||++++.+.....   ...+|.+..+..   ++ ..+.+++|||+|++++..   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999887654432   234555543332   22 346799999999999863   468889999999


Q ss_pred             EEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC--------ccCHHHHHHHHHH----cCCCEEEe
Q psy11135         79 LLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW--------AVDMNQAQELAEQ----FNIPFIKT  144 (191)
Q Consensus        79 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------~~~~~~~~~~~~~----~~~~~~~~  144 (191)
                      ++|||+++.  ++...+..|+..+...  .++.|+++++||+|+...        .+..++++++++.    ++++|+++
T Consensus        77 IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            999999997  3333333444444332  357999999999999763        3455566777775    67899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhhhhhhhhh
Q psy11135        145 SAKTRMGVDDAFYTLVREIKKDKMLRGKEK  174 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~~~~~~~~~~~~  174 (191)
                      ||++ .++.++|..+++.+.+.....++.-
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~le~~L  183 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSFLENML  183 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9998 5899999999998887665554444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.5e-27  Score=161.04  Aligned_cols=154  Identities=25%  Similarity=0.311  Sum_probs=112.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----HH--H--HHhh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----SA--M--RDQY   71 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~--~--~~~~   71 (191)
                      +.++|+++|.+|||||||++++.+...  ...+.+++.+.....+.+++..  +.+|||||+.+.    ..  .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998763  3445555555556666677655  789999997542    11  1  2245


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                      ++.+|++++|||+++..++. ...|+..+.... ..+.|+++|+||+|+.....      .+++..+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGETL------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcchh------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999987765 346666665532 34689999999999854211      11223467899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11135        152 VDDAFYTLVREIKK  165 (191)
Q Consensus       152 v~~l~~~i~~~~~~  165 (191)
                      ++++|++|.+.+..
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=4e-26  Score=167.15  Aligned_cols=159  Identities=20%  Similarity=0.186  Sum_probs=125.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSAMRDQ   70 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~   70 (191)
                      .-.|+++|.+|||||||+|+|.+..+.  .....++..........+ ....+.+|||||+.+          +......
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~   88 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ   88 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence            457999999999999999999998854  344445444444444444 134588999999843          3356677


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcC--CCEEEeccC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFN--IPFIKTSAK  147 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~--~~~~~~s~~  147 (191)
                      ++..+|++++|+|+++..+......|+..+..    .+.|+++|+||+|+. ......+....+.+.++  .+++++||+
T Consensus        89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~  164 (308)
T 3iev_A           89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL  164 (308)
T ss_dssp             HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred             HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            78899999999999998877777666666654    368999999999998 55666777788888876  789999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy11135        148 TRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~~~~  166 (191)
                      +|.|++++++.|.+.+.+.
T Consensus       165 ~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          165 KGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             TTBSHHHHHHHHHHHSCBC
T ss_pred             CCCCHHHHHHHHHHhCccC
Confidence            9999999999999988653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=2.1e-27  Score=169.50  Aligned_cols=150  Identities=16%  Similarity=0.192  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~   72 (191)
                      .+|+++|.+|||||||+|++.+... ....++++.+.....+..++.  .+.+|||||+..+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3799999999999999999998863 334444444555555666666  488999999875542          455566


Q ss_pred             --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         73 --RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                        ..+|++++|+|+++.++...+..   .+..    .+.|+++|+||+|+............+++.++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence              88999999999999665443333   2332    36899999999998653222233566888899999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVRE  162 (191)
Q Consensus       151 ~v~~l~~~i~~~  162 (191)
                      |+++++++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999775

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=6.4e-26  Score=155.66  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=107.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~   72 (191)
                      .++|+++|.+|+|||||++++.+..... ..++.+..........+..  +.+|||||          ++.+...+..++
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNSK--YYFVDLPGYGYAKVSKKERMLWKRLVEDYF   99 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETTT--EEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECCc--EEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence            4799999999999999999999887322 2222222222222222333  67899999          667777777777


Q ss_pred             ccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHcC-CCEEEec
Q psy11135         73 RTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQFN-IPFIKTS  145 (191)
Q Consensus        73 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~-~~~~~~s  145 (191)
                      ..+   +++++++|.++..+.... .+...+..    .+.|+++|+||+|+....   ...++...++...+ ++++++|
T Consensus       100 ~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (195)
T 3pqc_A          100 KNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS  174 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred             hcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence            766   999999999875432222 11222222    268999999999987522   23344555566544 7999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy11135        146 AKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~  165 (191)
                      |+++.|++++|++|.+.+.+
T Consensus       175 a~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          175 SVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999988754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=9.9e-27  Score=182.06  Aligned_cols=162  Identities=20%  Similarity=0.273  Sum_probs=120.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEE---------EEcCeEEEEEEEeCCChhhHHHHHHhh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV---------VIDGETALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      ++++||+++|.+|||||||++++.+..+...+.++.+..+....         ..++..+.+.+||+||++.+...+..+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            35799999999999999999999998877777777665444321         112335679999999999999888889


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      ++.++++++|||+++.+   .+..|+..+..+.  ++.|+++|+||+|+.. ..+..++...++...+++++++||++|.
T Consensus       119 l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             ccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999998764   4567777777653  3689999999999976 5567788888888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy11135        151 GVDDAFYTLVREIKKDK  167 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~  167 (191)
                      |+++++++|.+.+.+..
T Consensus       194 gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             -CTTHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999886543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.1e-26  Score=166.92  Aligned_cols=151  Identities=17%  Similarity=0.240  Sum_probs=113.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc--
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR--   73 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--   73 (191)
                      .++|+++|++|||||||++++.+.. ....+++++.+....  .++. ...+.+|||||+..+.      .....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            5799999999999999999999876 444554444333222  3343 4458899999987654      45555554  


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      .+|++++|+|+++.++.   ..|...+..    .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.|+
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence            69999999999886543   345555544    3689999999999864 2233 4567788889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11135        153 DDAFYTLVREIK  164 (191)
Q Consensus       153 ~~l~~~i~~~~~  164 (191)
                      +++|++|.+.+.
T Consensus       152 ~el~~~i~~~~~  163 (272)
T 3b1v_A          152 DQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=2.4e-26  Score=165.69  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=116.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhc-
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYM-   72 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-   72 (191)
                      |+.++|+++|++|||||||++++.+..+.... ++.+.+........++..  +.+|||||+..+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhh
Confidence            78899999999999999999999988753333 333334444445556655  88999999776543      444554 


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                       ..+|++++|+|.++.+   ....++..+...   ...|+++|+||+|+............+++.++++++++|+++|.|
T Consensus        79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred             ccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence             6899999999998864   233444444442   138999999999975422111236778888999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11135        152 VDDAFYTLVREIKK  165 (191)
Q Consensus       152 v~~l~~~i~~~~~~  165 (191)
                      ++++++.+.+.+..
T Consensus       153 i~~l~~~i~~~~~~  166 (271)
T 3k53_A          153 VEELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=5.5e-25  Score=168.93  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=98.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH--------Hhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR--------DQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   72 (191)
                      .++|+++|.+|+|||||+|+|.+..  ......+++.+.......+++..  +.+|||||+.++....        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            5899999999999999999999876  45566666666666666677655  8899999987765433        3367


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|++++|+|++++.++..+..+...+.. ..  +.|+++|+||+|+......  ..+.+.+....+++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~--~~piIvV~NK~Dl~~~~~~--~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAA-HP--AAKFLTVANKLDRAANADA--LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT--TSEEEEEEECTTSCTTTHH--HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC--CCCEEEEEECcCCCCccch--hHHHHHhcCCCceEEEEECCCCCH
Confidence            889999999999998776543333322222 22  6899999999999763321  223454443478999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11135        153 DDAFYTLVREIK  164 (191)
Q Consensus       153 ~~l~~~i~~~~~  164 (191)
                      ++++++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=4.5e-25  Score=154.69  Aligned_cols=159  Identities=17%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCCccceEEEEEEEc-CeEEEEEEEeCCC----------hhhHHHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVID-GETALLDILDTAG----------QEEYSAMR   68 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~   68 (191)
                      .++|+|+|.+|+|||||++++.+..   ......+++.....  .... .....+.+|||||          ++.+....
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            5799999999999999999999886   23333333332222  2232 3334588999999          45556666


Q ss_pred             Hhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHH-HHHHH-----
Q psy11135         69 DQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQ-ELAEQ-----  136 (191)
Q Consensus        69 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~-~~~~~-----  136 (191)
                      ..++..   +|++++++|.++..+.. ...++..+..    .+.|+++|+||+|+......   .+... .+...     
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            666665   78899999998753321 2233333333    46899999999998762221   11122 22222     


Q ss_pred             -cCCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135        137 -FNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       137 -~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~  168 (191)
                       .+++++++||+++.|+++++++|.+.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence             45789999999999999999999998876543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=9e-25  Score=159.25  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=110.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQY   71 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~   71 (191)
                      +..+|+++|.+|||||||+|++++..+.  +..+.++..........+  ...+.+|||||..+        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            4678999999999999999999988853  333344444433333333  34588999999765        55666778


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc-C-CCEEEeccCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYR-EQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF-N-IPFIKTSAKT  148 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~~  148 (191)
                      ++.+|++++|+|+++..+..  ..|+ ..+...  ..+.|+++|+||+|+.....   ........+ + .+++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchH---HHHHHHHHhcCcCcEEEEeCCC
Confidence            99999999999998864432  3443 334332  24689999999999875322   022333332 3 4689999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy11135        149 RMGVDDAFYTLVREIKK  165 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~  165 (191)
                      |.|++++++.|...+.+
T Consensus       157 g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          157 ERQVAELKADLLALMPE  173 (301)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.6e-24  Score=165.70  Aligned_cols=157  Identities=20%  Similarity=0.252  Sum_probs=113.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHHH-
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMRD-   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-   69 (191)
                      .++|+++|.+|||||||+|++++...  .....+++.+.....+..++..  +.+|||||+          +.+..... 
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHH
Confidence            48999999999999999999998874  4555566666555666677766  789999998          55555444 


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHH-HHHHHH----cCCCEEE
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQA-QELAEQ----FNIPFIK  143 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~-~~~~~~----~~~~~~~  143 (191)
                      .+++.+|++++|+|+++..+.... .|+..+..    .+.|+++|+||+|+.... ...++. ..+.+.    .++++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            468889999999999997776654 45544443    468999999999997633 222332 233333    3679999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhh
Q psy11135        144 TSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      +||++|.|++++|+.+.+.+...
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999887653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=1.4e-23  Score=156.70  Aligned_cols=162  Identities=19%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~   72 (191)
                      .++|+++|.+|||||||++++.+..... ....++..........++  ..+.+|||||....         ........
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            4789999999999999999999876422 223333333233333333  44889999997431         12223445


Q ss_pred             ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      ..+|++++|+|+++..  ++.....|+..+.....  +.|+++|+||+|+.... ..++...++...+++++++||++|+
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~iSA~~g~  321 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEE-NIKRLEKFVKEKGLNPIKISALKGT  321 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHH-HHHHHHHHHHHTTCCCEECBTTTTB
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChH-HHHHHHHHHHhcCCCeEEEeCCCCc
Confidence            5799999999998876  67777788877766432  78999999999987522 1244556667788999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy11135        151 GVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~~~  169 (191)
                      |+++++++|.+.+......
T Consensus       322 gi~~l~~~i~~~l~~~~~~  340 (357)
T 2e87_A          322 GIDLVKEEIIKTLRPLAEK  340 (357)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999998765443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=2.8e-24  Score=165.22  Aligned_cols=158  Identities=20%  Similarity=0.238  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHH-
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRD-   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~-   69 (191)
                      .++|+++|.+|+|||||++++.+..  ......+++.+.....+..++..  +.+|||||          ++.+..... 
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            5899999999999999999999775  34555566666555566677764  88999999          677766655 


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-----CCCEEE
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-----NIPFIK  143 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-----~~~~~~  143 (191)
                      .+++.+|++++|+|+++...- ....|+..+..    .+.|+++|+||+|+.. .....++..+.++..     ++++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            368899999999999885432 22334433333    4689999999999986 444556665555544     579999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        144 TSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       144 ~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      +||++|.|++++|+++.+.+....
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHhc
Confidence            999999999999999998886543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=2.3e-25  Score=155.69  Aligned_cols=142  Identities=14%  Similarity=0.224  Sum_probs=103.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc----
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT----   74 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----   74 (191)
                      +.++|+++|++|+|||||++++.+..+...   +.++....        .....+.+|||||++.+...+..++..    
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   82 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   82 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------GGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------eeCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence            368999999999999999999998875432   22222211        133458899999999998888888777    


Q ss_pred             CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCCCcc-C------HHHHHHHHHHcCCCEEE
Q psy11135         75 GEGFLLVFAVN-SMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLSTWAV-D------MNQAQELAEQFNIPFIK  143 (191)
Q Consensus        75 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~-~------~~~~~~~~~~~~~~~~~  143 (191)
                      ++++++|||++ +++++..+..|+..+....   ...+.|+++|+||+|+..... .      .+++..++...++++++
T Consensus        83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  162 (218)
T 1nrj_B           83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE  162 (218)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            89999999999 8888888888888776543   235789999999999976332 2      34566777777888999


Q ss_pred             eccCCCCC
Q psy11135        144 TSAKTRMG  151 (191)
Q Consensus       144 ~s~~~~~~  151 (191)
                      +|++++.+
T Consensus       163 ~Sa~~~~~  170 (218)
T 1nrj_B          163 VERKINEE  170 (218)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            99998765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=2.1e-24  Score=159.42  Aligned_cols=159  Identities=19%  Similarity=0.285  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHHhh---cccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRDQY---MRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~~   76 (191)
                      +|+++|.+|||||||++++++... ...+..++.......+.+++. ..+.+|||||..+    +..+...+   +..++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            588999999999999999987653 234443443333333445441 2488999999654    22233333   44599


Q ss_pred             EEEEEEeCCC---hhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCC
Q psy11135         77 GFLLVFAVNS---MKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRM  150 (191)
Q Consensus        77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  150 (191)
                      ++++|+|+++   .+++..+..|...+..+.. ..+.|+++|+||+|+..   ..+...++++.+.  .+++++||+++.
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~---~~e~~~~l~~~l~~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE---AAENLEAFKEKLTDDYPVFPISAVTRE  315 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT---HHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC---CHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence            9999999998   7788888888888877542 35789999999999875   2245667777776  789999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy11135        151 GVDDAFYTLVREIKKDK  167 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~~  167 (191)
                      |+++++++|.+.+.+.+
T Consensus       316 gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          316 GLRELLFEVANQLENTP  332 (342)
T ss_dssp             TTHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHhhCc
Confidence            99999999999886543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=5.6e-24  Score=163.49  Aligned_cols=152  Identities=26%  Similarity=0.317  Sum_probs=116.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-hHH--------HHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-EYS--------AMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~   71 (191)
                      .++|+++|.+|+|||||+|++.+.+  ...++++++.+.....+.+++..  +.+|||||.. ++.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence            3899999999999999999999875  46677777777766777777665  7899999987 443        233456


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG  151 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  151 (191)
                      +..+|++++|+|++++.++.... ++..+      .+.|+++|+||+|+... +..++...+. ..+++++++||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~-~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK-INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC-CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc-cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            88999999999999887765432 22222      36799999999999753 4445544443 2447899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11135        152 VDDAFYTLVREIKK  165 (191)
Q Consensus       152 v~~l~~~i~~~~~~  165 (191)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=1.8e-23  Score=159.96  Aligned_cols=152  Identities=22%  Similarity=0.320  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HHHHHHhhcc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YSAMRDQYMR   73 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~   73 (191)
                      +|+++|.+|||||||+|++.+..  ...+.++++.+.......+++..  +.+|||||++.         +......+++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            78999999999999999999876  34566666666666667777776  78899999653         3456677899


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHHHHcCC-CEEEeccCCCCC
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELAEQFNI-PFIKTSAKTRMG  151 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~  151 (191)
                      .+|++++|+|+++..+...  .++..+...   .+.|+++|+||+|+... . ..+. .++. .+++ +++++||++|.|
T Consensus        81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~g  152 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE-F-EREVKPELY-SLGFGEPIPVSAEHNIN  152 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH-H-HHHTHHHHG-GGSSCSCEECBTTTTBS
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc-c-HHHHHHHHH-hcCCCCEEEEeccCCCC
Confidence            9999999999987544321  222222221   25799999999997531 1 1222 3443 4666 799999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11135        152 VDDAFYTLVREIKKD  166 (191)
Q Consensus       152 v~~l~~~i~~~~~~~  166 (191)
                      ++++++++.+.+.+.
T Consensus       153 v~~L~~~i~~~l~~~  167 (439)
T 1mky_A          153 LDTMLETIIKKLEEK  167 (439)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999999988653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=4.5e-24  Score=158.20  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=99.7

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .+.+++||++|++.++..|..++++++++|+|||+++          ..++.....|+..+.......+.|+++|+||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4568999999999999999999999999999999999          467888888888887644446799999999999


Q ss_pred             CCCC----------------ccCHHHHHHHHH-----------HcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        120 LSTW----------------AVDMNQAQELAE-----------QFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       120 ~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      +...                .++.+++..++.           ..++.++++||+++.|++++|+++.+.+....
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            8531                256778888776           35678999999999999999999999887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=6e-25  Score=168.02  Aligned_cols=154  Identities=16%  Similarity=0.193  Sum_probs=100.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh--------hHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE--------EYSAMRDQ   70 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~   70 (191)
                      |...+|+++|.+|||||||+|+|.+...  ..+.++++.+.......+++.  .+.+|||||+.        .+......
T Consensus         1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~   78 (436)
T 2hjg_A            1 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEI   78 (436)
T ss_dssp             --CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHH
Confidence            5557999999999999999999998764  344444444444443334444  48899999985        56667778


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTR  149 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  149 (191)
                      +++.+|++++|+|+.+..+..  ..++..+.   ...+.|+++|+||+|+.....   +..++. .++. +++++||.+|
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~--d~~~~~~l---~~~~~pvilv~NK~D~~~~~~---~~~~~~-~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAA--DEEVAKIL---YRTKKPVVLAVNKLDNTEMRA---NIYDFY-SLGFGEPYPISGTHG  149 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHH--HHHHHHHH---TTCCSCEEEEEECCCC--------CCCSSG-GGSSCCCEECBTTTT
T ss_pred             HHHhCCEEEEEEeCCCCCCHH--HHHHHHHH---HHcCCCEEEEEECccCccchh---hHHHHH-HcCCCCeEEEeCcCC
Confidence            899999999999998865533  23333322   235789999999999865221   111222 3455 7899999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy11135        150 MGVDDAFYTLVREIKK  165 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~  165 (191)
                      .|++++++++.+.+.+
T Consensus       150 ~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             BTHHHHHHHHHHTGGG
T ss_pred             CChHHHHHHHHHhcCc
Confidence            9999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=7.9e-23  Score=154.88  Aligned_cols=161  Identities=19%  Similarity=0.182  Sum_probs=111.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--cCCc---------cceEEEEE-----E---EcCeEEEEEEEeCCChh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTI---------EDSYRKQV-----V---IDGETALLDILDTAGQE   62 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~---------~~~~~~~~-----~---~~~~~~~~~~~D~~g~~   62 (191)
                      +.++|+++|++|+|||||+++|.+.......  ..++         ...+....     .   .......+.+|||||++
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            5789999999999999999999875432110  0000         00000000     0   01122568999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH---c--
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ---F--  137 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~--  137 (191)
                      ++......++..+|++++++|+++..+......++..+....   ..|+++|+||+|+.......+...++.+.   .  
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~  163 (403)
T 3sjy_A           87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA  163 (403)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999998765666666666554431   24899999999987632211222223222   2  


Q ss_pred             -CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        138 -NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       138 -~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                       +++++++||++|.|+++++++|.+.+..
T Consensus       164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          164 ENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence             5789999999999999999999987754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.9e-24  Score=163.48  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=113.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-------HHhhcc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-------RDQYMR   73 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~   73 (191)
                      .++|+++|..|+|||||++++.+..+  .....+++.+.........+.. .+.+|||||+.++...       ...++.
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~  112 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFY  112 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence            57999999999999999999998774  3444455555555555555542 5889999998765432       455788


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|++++|+|++..+   ....|+..+...    +.|+++|+||+|+...... +...++++.++++++++||++|.|++
T Consensus       113 ~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~  184 (423)
T 3qq5_A          113 RADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFD  184 (423)
T ss_dssp             SCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred             cCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHH
Confidence            999999999994433   335566655553    6899999999999874433 66677777889999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy11135        154 DAFYTLVREIKKD  166 (191)
Q Consensus       154 ~l~~~i~~~~~~~  166 (191)
                      ++|++|.+.+.+.
T Consensus       185 eL~~~L~~~l~~~  197 (423)
T 3qq5_A          185 DIGKTISEILPGD  197 (423)
T ss_dssp             THHHHHHHHSCCC
T ss_pred             HHHHHHHHhhhhh
Confidence            9999999988543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=2.6e-22  Score=154.78  Aligned_cols=155  Identities=16%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCC----C---CCCccC-CccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhc
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNH----F---VDEYDP-TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYM   72 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~----~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~   72 (191)
                      |+.++|+++|+.++|||||+++|.+..    .   ..+..+ .+.+.....+.+++  ..+.+|||||++++.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            678999999999999999999999766    1   111111 11111111233444  4588999999999988888889


Q ss_pred             ccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHc----CCCEE
Q psy11135         73 RTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQF----NIPFI  142 (191)
Q Consensus        73 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~----~~~~~  142 (191)
                      ..+|++++|+|+++   +.+.+.+.    .+..    .+.|.++|+||+|+....   ...++..++.+..    +++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            99999999999988   44433332    2222    257889999999997521   1223344555555    57899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ++||++|.|+++++++|.+.+..
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhcC
Confidence            99999999999999999998763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=7.5e-22  Score=139.78  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=107.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC---CccceEEEEEEEcCeEEEEEEEeCCCh-----------hhHHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQVVIDGETALLDILDTAGQ-----------EEYSAM   67 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~   67 (191)
                      ..++|+++|.+|+|||||++++++........+   ++..........++..  +.+|||||.           ..+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHHH
Confidence            468999999999999999999999886444332   3334444445566655  789999993           344455


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCCc-cC------HHHHHHHHHHcCC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTWA-VD------MNQAQELAEQFNI  139 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~-~~------~~~~~~~~~~~~~  139 (191)
                      ....+..+|++++|+|+++....  ...++..+.... .....|+++|+||+|+.... +.      .+.++.+.+.++.
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~  183 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD  183 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence            55666788999999999764431  122232222111 11235999999999986522 11      2457788889999


Q ss_pred             CEEEeccCCC-----CCHHHHHHHHHHHHHh
Q psy11135        140 PFIKTSAKTR-----MGVDDAFYTLVREIKK  165 (191)
Q Consensus       140 ~~~~~s~~~~-----~~v~~l~~~i~~~~~~  165 (191)
                      .++.++...+     .++.+++..+...+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            9988887644     6889999888877754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=2.8e-24  Score=159.23  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      ..+.+++|||+|+++++..+..++++++++++|||++          +..++.....|+..+.......+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5678999999999999999999999999999999998          778899999999888764444678999999999


Q ss_pred             CCCCCc---c-------------------CHHHHHHHHHH----------------cCCCEEEeccCCCCCHHHHHHHHH
Q psy11135        119 DLSTWA---V-------------------DMNQAQELAEQ----------------FNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus       119 D~~~~~---~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+....   +                   +.+++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            984311   1                   13556666332                123568999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+....
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9886544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=6.2e-23  Score=149.74  Aligned_cols=156  Identities=21%  Similarity=0.151  Sum_probs=108.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChh-hHHH--------HHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-EYSA--------MRDQ   70 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~   70 (191)
                      +..+|+++|++|+|||||++++.+..+.  .....++..........++  ..+.+|||||+. ....        ....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4568999999999999999999988742  3333344433333333343  458899999987 3322        2235


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKT  148 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~  148 (191)
                      .+..+|++++++|.++   +.....++.....   ..+.|.++|+||+|+.. .....+...++++.++. .++++||++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            5678999999999977   2223333322222   24689999999999875 22233445566666675 699999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy11135        149 RMGVDDAFYTLVREIKK  165 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~~  165 (191)
                      +.|++++++.|...+.+
T Consensus       159 g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhCCc
Confidence            99999999999876654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=2.1e-22  Score=144.29  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=107.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccC--CccceEEEEEEEcCeEEEEEEEeCCChhhH-----------HHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDP--TIEDSYRKQVVIDGETALLDILDTAGQEEY-----------SAM   67 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~   67 (191)
                      +.++|+|+|.+|||||||++++++.. +.....+  ++..........++..  +.+|||||+...           ...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999877 4444333  3334444444555554  889999997643           223


Q ss_pred             HHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEe-cCCCCCCccCH-------HHHHHHHHHcC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGN-KCDLSTWAVDM-------NQAQELAEQFN  138 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~-------~~~~~~~~~~~  138 (191)
                      ...++..+|++++|+|+++.... ..+..++.....  .....|.++|+| |+|+....+..       .++..+.+.++
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG--EDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC--chhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence            33467889999999999863221 122233332221  111356676676 99997543222       33445666666


Q ss_pred             CCE-----EEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        139 IPF-----IKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       139 ~~~-----~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ..+     +++||+++.|++++|+.|.+.+....
T Consensus       177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            432     78999999999999999999887643

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=9.1e-23  Score=149.20  Aligned_cols=119  Identities=16%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      ..+.+++||++|+++++..|..++++++++++|||++          +..++.+...|+..+.......+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3466899999999999999999999999999999665          566777777888877665445679999999999


Q ss_pred             CCCCC-----------------ccCHHHHHHHH----------HHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        119 DLSTW-----------------AVDMNQAQELA----------EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       119 D~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      |+...                 ..+.+++..+.          ...++.++++||+++.||+.+|+++.+.+.+..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            98541                 35777777773          345577899999999999999999999988754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=2.9e-23  Score=158.92  Aligned_cols=152  Identities=27%  Similarity=0.309  Sum_probs=103.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH--------Hhhc
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR--------DQYM   72 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   72 (191)
                      .++|+++|++|+|||||+|+|.+..  ......+++.+.......+++..  +.+|||||+.+.....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence            5799999999999999999999865  35555666665555556677765  7899999986654332        2357


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|++++|+|.+++.+... ..++..+.      ..|+++|+||+|+....... ....+.  .+.+++++|+++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~~~~-~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQLIT-SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGGGST-TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcchhhH-HHHHhc--cCCcEEEEECCCCCCH
Confidence            88999999999998765443 33333332      36999999999997622111 111111  3568999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy11135        153 DDAFYTLVREIKKD  166 (191)
Q Consensus       153 ~~l~~~i~~~~~~~  166 (191)
                      ++++++|.+.+...
T Consensus       372 ~eL~~~i~~~~~~~  385 (462)
T 3geh_A          372 DSLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=1.4e-21  Score=145.67  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=108.0

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh---------hhHHHHHHhhc
Q psy11135          4 YK-LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ---------EEYSAMRDQYM   72 (191)
Q Consensus         4 ~~-i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~   72 (191)
                      ++ |+++|++|+|||||+|++.+... ..+...++.+.....+.+++..  +.+|||+|.         +.+...+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            45 89999999999999999998774 2344444445555566777754  789999996         22333433 47


Q ss_pred             ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHHHc---CCCEEEec
Q psy11135         73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAEQF---NIPFIKTS  145 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~s  145 (191)
                      ..+|++++++|++++.  ....+..+...+.. ....+.|+++|+||+|+......  .+.+..+++.+   +.+++++|
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            8899999999998876  44445445444443 23356899999999998753311  11233344555   24689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++++.|++++++.|.+.+...
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhccc
Confidence            999999999999998877654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=6e-22  Score=151.60  Aligned_cols=157  Identities=22%  Similarity=0.231  Sum_probs=106.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH------------H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM------------R   68 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~   68 (191)
                      .++|+++|++|||||||++++.+...  .....+++.+.....+.+++..  +.+|||||..+....            .
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHHH
Confidence            47999999999999999999998764  4555566655555666778775  788999997543221            1


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHH-HHHHH----cCCCEE
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQ-ELAEQ----FNIPFI  142 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~-~~~~~----~~~~~~  142 (191)
                      ..++..+|++++++|+++..+.... .+...+.    ..+.|+++|+||+|+.... ...++.. .+...    .+++++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            2456779999999999876554332 2222222    2468999999999987632 3333332 23333    357899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++||++|.|++++|+.+.+.+...
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999877653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=1.9e-22  Score=149.93  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .+.+.+|||+|++.++..|..++++++++++|||+++          ..++.....|+..+.......+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4568999999999999999999999999999999999          678999889988887644446799999999999


Q ss_pred             CCCC-----------------ccCHHHHHHHHH-----------HcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        120 LSTW-----------------AVDMNQAQELAE-----------QFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       120 ~~~~-----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      +...                 .++.+++..++.           ..++.++++||+++.|++++|+++.+.+....
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            8531                 256677776652           34578899999999999999999999887544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=5.1e-21  Score=145.19  Aligned_cols=157  Identities=23%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccC--CccceEEEE-EEE-------------c--C----eEEEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDP--TIEDSYRKQ-VVI-------------D--G----ETALLDIL   56 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~-~~~-------------~--~----~~~~~~~~   56 (191)
                      +.++|+++|+.++|||||+++|.+..   +.....+  |....+... ...             +  +    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            36899999999999999999998543   2222222  222222111 110             1  1    12678999


Q ss_pred             eCCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHH
Q psy11135         57 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQ  129 (191)
Q Consensus        57 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~  129 (191)
                      ||||++++.......+..+|++++|+|+++.    .+.+.+..    +...   ...|+++|+||+|+....   ...++
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL---GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT---TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc---CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999988877888889999999999853    34433322    2221   124899999999997633   23345


Q ss_pred             HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ..++.+..   +++++++||++|.|+++++++|.+.+..
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            55665543   5789999999999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=1.5e-21  Score=153.31  Aligned_cols=158  Identities=26%  Similarity=0.313  Sum_probs=111.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CccCC------cc---ceEEEEEEE---cCeEEEEEEEeCCChhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-----EYDPT------IE---DSYRKQVVI---DGETALLDILDTAGQEE   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-----~~~~~------~~---~~~~~~~~~---~~~~~~~~~~D~~g~~~   63 (191)
                      -.+|+++|+.++|||||+++|+...  +..     ....+      .+   ........+   ++..+.+.+|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            3589999999999999999998632  111     00000      00   000111222   45568899999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---C
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---P  140 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~  140 (191)
                      +.......++.+|++++|+|+++..+......|.....     .+.|+++|+||+|+.... ..+...++.+.++.   +
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666654443     267999999999997643 33445667777776   4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        141 FIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       141 ~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++++||++|.|+++++++|.+.+...
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             EEEeecccCCCchhHHHHHhhcCCCc
Confidence            99999999999999999999887653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=2.9e-21  Score=151.43  Aligned_cols=158  Identities=20%  Similarity=0.303  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----ccC----------Cccc-eEEEEEEE-cCeEEEEEEEeCCChhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE-----YDP----------TIED-SYRKQVVI-DGETALLDILDTAGQEE   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----~~~----------~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~   63 (191)
                      -.+|+++|+.++|||||+++|+...  +...     ...          |... .....+.. ++..+.+.+|||||+.+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            4589999999999999999998532  1110     000          1110 01111111 45568899999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---C
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---P  140 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~  140 (191)
                      +.......+..+|++++|+|+++..+......|.....     .+.|+++|+||+|+.... ..+...++.+.+++   +
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~  159 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEE  159 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGG
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCccc
Confidence            99888888999999999999999777666666654443     368999999999997643 23445667777776   4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        141 FIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       141 ~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++++||++|.|+++++++|.+.+...
T Consensus       160 vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          160 AILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             EEEEEeecCCCchHHHHHHHHhcccc
Confidence            99999999999999999999888653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=2.4e-23  Score=160.07  Aligned_cols=154  Identities=15%  Similarity=0.183  Sum_probs=100.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCC--------hhhHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAG--------QEEYSAMRDQ   70 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~   70 (191)
                      |...+|+++|.+|||||||+|+|.+....  ...++++.+.........+  ..+.+|||||        +..+......
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            56679999999999999999999987642  3333444443333332333  3588999999        7778888888


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTR  149 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  149 (191)
                      ++..+|++++|+|..+..+  ....++..+..   ..+.|+++|+||+|+....   ....++. ..+. .++++||.+|
T Consensus        99 ~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~---~~~~pvilV~NK~D~~~~~---~~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVT--AADEEVAKILY---RTKKPVVLAVNKLDNTEMR---ANIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSC--HHHHHHHHHHT---TCCSCEEEEEECC------------CCSG-GGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCCCC--hHHHHHHHHHH---HcCCCEEEEEECccchhhh---hhHHHHH-HcCCCceEEeecccc
Confidence            9999999999999876333  22333333332   3578999999999986421   1111121 2333 5789999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy11135        150 MGVDDAFYTLVREIKK  165 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~  165 (191)
                      .|+.++++.+.+.+.+
T Consensus       170 ~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTHHHHHHHHHTTGGG
T ss_pred             cchHHHHHHHHhhccc
Confidence            9999999999876643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.6e-22  Score=145.90  Aligned_cols=157  Identities=19%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCc-------cCCcc-ceEEEEEEEcCeEEEEEEEeCCChh-------hHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEY-------DPTIE-DSYRKQVVIDGETALLDILDTAGQE-------EYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~   66 (191)
                      +++|+++|.+|+|||||+|+|++... ...+       .++.. +........++..+.+.+|||||..       .+..
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~   87 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP   87 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence            68999999999999999999987763 3333       23333 2222333335555679999999962       2333


Q ss_pred             HH-------Hhhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         67 MR-------DQYMRT-------------GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        67 ~~-------~~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                      +.       ..++..             +|+++++++.+...-...-..++..+..     +.|+++|+||+|+......
T Consensus        88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHH
Confidence            32       223332             6788888876552211111233333322     6899999999998642111


Q ss_pred             ---HHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        127 ---MNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       127 ---~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                         .+...+.....+++++++|+.++.++++++++|.+.++
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence               12234445567899999999999999999999887654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.8e-23  Score=140.49  Aligned_cols=115  Identities=16%  Similarity=0.274  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc----
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT----   74 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----   74 (191)
                      +.++|+++|++|||||||++++.+..+...   ..++..        .+...+.+.+|||||+..+...+..++..    
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            357999999999999999999998875431   111111        11133457899999998776666665554    


Q ss_pred             CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCCCc
Q psy11135         75 GEGFLLVFAVN-SMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        75 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +|++++|||++ +.+++..+..|+..+....   ...+.|+++|+||+|+....
T Consensus       119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            89999999999 8999999888887776543   23578999999999997643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=1.1e-21  Score=144.05  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=96.0

Q ss_pred             CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135         48 GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK  117 (191)
Q Consensus        48 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  117 (191)
                      ...+.+++||++|+++++..|..++++++++++|||++          +..++.+...|+..+.......+.|+++++||
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence            34466899999999999999999999999999999998          67788888888888876545568999999999


Q ss_pred             CCCCCC----------------ccCHHHHHHHH-HHc--------------------------CCCEEEeccCCCCCHHH
Q psy11135        118 CDLSTW----------------AVDMNQAQELA-EQF--------------------------NIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       118 ~D~~~~----------------~~~~~~~~~~~-~~~--------------------------~~~~~~~s~~~~~~v~~  154 (191)
                      +|+...                ....+++..+. +++                          .+.++++||.++.|++.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            998431                12345554433 222                          36789999999999999


Q ss_pred             HHHHHHHHHHh
Q psy11135        155 AFYTLVREIKK  165 (191)
Q Consensus       155 l~~~i~~~~~~  165 (191)
                      +|+.+...+..
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999887

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=6.8e-21  Score=144.63  Aligned_cols=156  Identities=22%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccC--CccceEEEEEEE--------------c--C----eEEEEEEEe
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDP--TIEDSYRKQVVI--------------D--G----ETALLDILD   57 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~--------------~--~----~~~~~~~~D   57 (191)
                      .++|+++|+.++|||||+++|.+..   ......+  |....+......              +  +    ....+.+||
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            5899999999999999999998653   2222222  222222111110              1  1    125689999


Q ss_pred             CCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHH
Q psy11135         58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQA  130 (191)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~  130 (191)
                      |||++++.......+..+|++++|+|+++.    .+.+.+..    +...   ...|+++|+||+|+.....   ..++.
T Consensus        90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII---GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            999999988877888899999999999853    33333322    2221   1258999999999876221   22334


Q ss_pred             HHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        131 QELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       131 ~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ..+.+.   .+++++++||+++.|+++++++|.+.+..
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            444443   35799999999999999999999887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=3.2e-21  Score=147.35  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc------------------------------cCCccceEEEEEEEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEY------------------------------DPTIEDSYRKQVVIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~   50 (191)
                      .++|+++|++++|||||+++|+...  +....                              ...+-+....  .+....
T Consensus        17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~~~~   94 (439)
T 3j2k_7           17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFETEK   94 (439)
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEecCC
Confidence            5899999999999999999996542  11000                              0111111112  233333


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---FE---DIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTW  123 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  123 (191)
                      ..+.+|||||++++......++..+|++++|+|+++...   ++   .....+..+..    .+.| +++|+||+|+...
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence            468999999999999988888999999999999988532   11   11222222222    2456 9999999998642


Q ss_pred             ccC-------HHHHHHHHHHcC------CCEEEeccCCCCCHHHHHH
Q psy11135        124 AVD-------MNQAQELAEQFN------IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       124 ~~~-------~~~~~~~~~~~~------~~~~~~s~~~~~~v~~l~~  157 (191)
                      ..+       .++...+.+.++      ++++++||++|.|++++.+
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            221       223344555554      4699999999999999655

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=8.8e-22  Score=152.23  Aligned_cols=148  Identities=15%  Similarity=0.137  Sum_probs=95.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~   49 (191)
                      +.+||+++|.+++|||||+++|+...  +...                              ....+.+...  ..++..
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFSTH  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEecC
Confidence            46899999999999999999997552  1100                              0011111112  223334


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFED------IGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      ...+.+|||||++++......++..+|++++|+|+++......      ....+.....   ....|+++|+||+|+...
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccc
Confidence            4568999999999999999999999999999999998643222      1122111221   112479999999998752


Q ss_pred             -ccCHH----HHHHHHHHc-----CCCEEEeccCCCCCHHH
Q psy11135        124 -AVDMN----QAQELAEQF-----NIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       124 -~~~~~----~~~~~~~~~-----~~~~~~~s~~~~~~v~~  154 (191)
                       ....+    +...+...+     +++++++||++|.|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             12222    233333333     35799999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.86  E-value=5e-21  Score=143.46  Aligned_cols=118  Identities=15%  Similarity=0.104  Sum_probs=96.1

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      +.+++|||+|++.++..|..++++++++|+|||+++          ..++.....|+..+.......+.|+++|+||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            668999999999999999999999999999999999          8899999999998876544567999999999998


Q ss_pred             CCCc----c---------------------------CHHHHHHHH-----HH--------cCCCEEEeccCCCCCHHHHH
Q psy11135        121 STWA----V---------------------------DMNQAQELA-----EQ--------FNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       121 ~~~~----~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ....    +                           ..+++..++     +.        .++.++++||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            4311    1                           134555553     22        24668899999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy11135        157 YTLVREIKKDKM  168 (191)
Q Consensus       157 ~~i~~~~~~~~~  168 (191)
                      .++...+.....
T Consensus       377 ~~v~~~I~~~~l  388 (402)
T 1azs_C          377 NDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888865543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=1.2e-23  Score=162.95  Aligned_cols=156  Identities=22%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      +..+|+++|++++|||||+++|.+..+.....++.. ......... ++.  .+.+|||||++.+...+..++..+|+++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            467899999999999999999987664333333222 111112222 223  4788999999999998888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHH---HHHc--CCCEEEeccCCCCCH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQEL---AEQF--NIPFIKTSAKTRMGV  152 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~---~~~~--~~~~~~~s~~~~~~v  152 (191)
                      +|+|+++.........+ ..+.    ..+.|+++|+||+|+....  ...++...+   ...+  .++++++||++|.|+
T Consensus        81 LVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           81 LVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             EECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            99999986544333322 2222    2467999999999987522  111222221   1122  247999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11135        153 DDAFYTLVREIK  164 (191)
Q Consensus       153 ~~l~~~i~~~~~  164 (191)
                      ++++++|...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999988765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=4.1e-21  Score=143.55  Aligned_cols=146  Identities=10%  Similarity=0.031  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      +|+++|++++|||||+++|.      ....|.... ...  +......+.+|||||++++.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~-~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT-MYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSE-EEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEee-EEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            89999999999999999998      111111111 122  33233348999999999998877778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEe-cCCCCCCccCH---HHHHHHHHHcC---CCEEE--eccCC---CCC
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGN-KCDLSTWAVDM---NQAQELAEQFN---IPFIK--TSAKT---RMG  151 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~---~~~~~~~~~~~---~~~~~--~s~~~---~~~  151 (191)
                      +. .......+++..+...    +.|. ++++| |+|+ ......   ++.+++.+.++   +++++  +||++   +.|
T Consensus        93 ~~-g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 PQ-GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             TT-CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             CC-CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence            44 3333445555444332    4676 99999 9998 522111   34444544443   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11135        152 VDDAFYTLVREIKKD  166 (191)
Q Consensus       152 v~~l~~~i~~~~~~~  166 (191)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999988764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=1.9e-20  Score=145.48  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=79.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CCc------cCCccceEEEEEEEcCeEEEEEEEeCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-----------------DEY------DPTIEDSYRKQVVIDGETALLDILDTA   59 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-----------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~   59 (191)
                      ..+|+++|++|+|||||+++|+.....                 .++      ...+.......+...+  +.+.+||||
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP   90 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP   90 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence            468999999999999999999622110                 000      0111111122233343  458899999


Q ss_pred             ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      |+.++......+++.+|++++|+|+++..+......| ..+..    .+.|+++|+||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999986655554433 33332    3689999999999865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=1e-20  Score=142.98  Aligned_cols=159  Identities=19%  Similarity=0.132  Sum_probs=107.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC--ccC-----Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-------FVDE--YDP-----TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~--~~~-----~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      +.++|+++|+.++|||||+++|.+..       +...  .+.     ..+ +.......++.....+.+|||||++++..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            47899999999999999999998641       1000  000     000 00011122333344588999999999988


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc----cCHHHHHHHHHHcC---
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA----VDMNQAQELAEQFN---  138 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~----~~~~~~~~~~~~~~---  138 (191)
                      ....++..+|++++++|+++....... ..+..+..    .+.| +++++||+|+....    ...++..++.+.++   
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            888889999999999999985433322 22233322    2578 68999999987411    11234556677666   


Q ss_pred             --CCEEEeccCCCCC----------HHHHHHHHHHHHHh
Q psy11135        139 --IPFIKTSAKTRMG----------VDDAFYTLVREIKK  165 (191)
Q Consensus       139 --~~~~~~s~~~~~~----------v~~l~~~i~~~~~~  165 (191)
                        ++++++||+++.|          +.++++.|.+.+..
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence              5899999998664          88888888776653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=1.5e-21  Score=149.14  Aligned_cols=153  Identities=15%  Similarity=0.215  Sum_probs=102.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCc------------------------------cCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN--HFVDEY------------------------------DPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|+.++|||||+++|+..  .+....                              ...+-+..  ...++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEecC
Confidence            4689999999999999999999864  222110                              00111111  1123334


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCC-CcEEEEEecCCCCCCcc
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEE-VPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~-~p~ivv~nK~D~~~~~~  125 (191)
                      ...+.+|||||+.++......++..+|++++|+|+++ .+++....|..+...   .....+ .|+++++||+|+.....
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            4558999999999999988899999999999999998 666654433222211   111123 36899999999976322


Q ss_pred             -------CHHHHHHHHHHcC-----CCEEEeccCCCCCHHHHHH
Q psy11135        126 -------DMNQAQELAEQFN-----IPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       126 -------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l~~  157 (191)
                             ..++...+++.++     ++++++||++|.|+.++++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                   1344566666666     6799999999999975543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=6.8e-21  Score=149.68  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc----CCccceEEEEEE-------------EcCeEEEEEEEeCCChhh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVV-------------IDGETALLDILDTAGQEE   63 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~~D~~g~~~   63 (191)
                      ++..+|+++|++++|||||++++.+..+.....    .+.+..+.....             .+.....+.+|||||+.+
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            357899999999999999999998765432211    121111110000             001112488999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--------------
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--------------  126 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------------  126 (191)
                      +...+..++..+|++++|+|+++   +.+++.+..    +..    .+.|+++++||+|+......              
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            98888888899999999999999   655554432    222    36899999999998642110              


Q ss_pred             HH----------HHHHHHHHcC---------------CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        127 MN----------QAQELAEQFN---------------IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       127 ~~----------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .+          +......+.+               ++++++||++|.|+++++++|...+..
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            00          0111111111               379999999999999999999988764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=1.5e-20  Score=142.61  Aligned_cols=156  Identities=17%  Similarity=0.160  Sum_probs=107.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC----------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN--------HFVDE----------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      +.++|+++|++++|||||+++|.+.        .+...          ....+-..  ....++.....+.+|||||+++
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSGG
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChHH
Confidence            4689999999999999999999873        11100          00111111  2223343344588999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN  138 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~  138 (191)
                      +......++..+|++++|+|+++.... ....++..+..    .+.| +++|+||+|+.....    ..++..++.+.++
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            988888889999999999999886433 33445444433    2567 899999999974211    1224555666665


Q ss_pred             -----CCEEEeccCCCCC------------------HHHHHHHHHHHHH
Q psy11135        139 -----IPFIKTSAKTRMG------------------VDDAFYTLVREIK  164 (191)
Q Consensus       139 -----~~~~~~s~~~~~~------------------v~~l~~~i~~~~~  164 (191)
                           ++++++||++|.|                  +.+++++|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6899999999877                  6677777666554

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.6e-22  Score=149.00  Aligned_cols=158  Identities=21%  Similarity=0.344  Sum_probs=83.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCcc--------CCcc-ceEEEEEEEcCeEEEEEEEeCCCh-------hhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYD--------PTIE-DSYRKQVVIDGETALLDILDTAGQ-------EEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~   65 (191)
                      .++|+++|++|+|||||+++|++.. +...+.        ++.. .........++....+.+|||||+       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            6899999999999999999987654 322221        1221 111222233555667999999998       4444


Q ss_pred             HHHH-------hhcccCCE-----------EEEEEeCCC-hhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc-
Q psy11135         66 AMRD-------QYMRTGEG-----------FLLVFAVNS-MKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA-  124 (191)
Q Consensus        66 ~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-  124 (191)
                      .+..       .++..+++           .+++|++++ ..++..+. .++..+     ..+.|+++|+||+|+.... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHH
Confidence            4443       44443332           235566554 33444443 232222     2578999999999987622 


Q ss_pred             cCH--HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        125 VDM--NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       125 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      +..  +++..+++.++++++++|++++.+ ++.|..+.+.+.+.
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            222  355666777889999999999998 88888888777653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=6.4e-20  Score=140.17  Aligned_cols=149  Identities=17%  Similarity=0.135  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC----------ccCCccceE--------------------EEEEEEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE----------YDPTIEDSY--------------------RKQVVIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~~~   50 (191)
                      .++|+++|+.++|||||+++|++..  +...          ..++++..+                    .....+....
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~  103 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK  103 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence            4899999999999999999998654  1111          111211000                    0111223334


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-----  125 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----  125 (191)
                      ..+.+|||||++++......++..+|++++|+|+++.... ....++..+...   ...|+++|+||+|+.....     
T Consensus       104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHH
Confidence            5588999999999988888889999999999999885432 223333333221   1236999999999975211     


Q ss_pred             CHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135        126 DMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       126 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                      ..++...+++.++     ++++++||++|.|++++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            2234556677777     68999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2e-20  Score=147.81  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=97.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------------------------------cCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--------------------------------DPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|++++|||||+++|++....-..                                .+.+.+.....+...  
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~--  243 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--  243 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence            3689999999999999999999866421110                                111111112222333  


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---F---EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      ...+.+|||||+.++......++..+|++++|+|+++...   +   ......+.....   ....|+++|+||+|+...
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccch
Confidence            3458899999999999999999999999999999987420   0   011111111111   122459999999998752


Q ss_pred             -ccC----HHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135        124 -AVD----MNQAQELAEQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       124 -~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                       ...    .++...+...++     ++++++||++|.|+.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence             111    223344444444     58999999999999876

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.83  E-value=1.8e-19  Score=144.36  Aligned_cols=163  Identities=16%  Similarity=0.248  Sum_probs=107.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceE--------EEEEEE--------------------------
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSY--------RKQVVI--------------------------   46 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~--------~~~~~~--------------------------   46 (191)
                      ..++|+|+|.+|+|||||+|+|++... +....+++....        .....+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            368999999999999999999998874 333333331100        001111                          


Q ss_pred             --------------------cCeE--EEEEEEeCCChhhH---HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11135         47 --------------------DGET--ALLDILDTAGQEEY---SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK  101 (191)
Q Consensus        47 --------------------~~~~--~~~~~~D~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  101 (191)
                                          +...  ..+.+|||||....   ......++..+|++++|+|.+++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                0000  24789999997653   3455677889999999999998777666655543332


Q ss_pred             hhcCCCCCcEEEEEecCCCCCCc-cCHH---H-------HHH-----HHHH--------cCCCEEEeccC----------
Q psy11135        102 RVKDAEEVPMVLVGNKCDLSTWA-VDMN---Q-------AQE-----LAEQ--------FNIPFIKTSAK----------  147 (191)
Q Consensus       102 ~~~~~~~~p~ivv~nK~D~~~~~-~~~~---~-------~~~-----~~~~--------~~~~~~~~s~~----------  147 (191)
                          ..+.|+++|+||+|+.... ++.+   +       ...     +...        ...+++++||+          
T Consensus       228 ----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          228 ----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             ----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             ----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence                2367899999999986422 1111   1       111     1111        12479999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHhhhh
Q psy11135        148 ----TRMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       148 ----~~~~v~~l~~~i~~~~~~~~~  168 (191)
                          ++.|++++++.|.+.+...+.
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~~~  328 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRERA  328 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHHhHH
Confidence                999999999999988865443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.6e-20  Score=137.09  Aligned_cols=156  Identities=19%  Similarity=0.166  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCC-----------------------ccc---------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPT-----------------------IED---------------   38 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~-----------------------~~~---------------   38 (191)
                      ..+|+|+|.+|||||||+++|.+..+...      ..++                       +.+               
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g  105 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence            46999999999999999999998875311      1121                       000               


Q ss_pred             --------eEEEEEEEcCeEEEEEEEeCCChh-------------hHHHHHHhhcccCCEEE-EEEeCCChhhHHHHHHH
Q psy11135         39 --------SYRKQVVIDGETALLDILDTAGQE-------------EYSAMRDQYMRTGEGFL-LVFAVNSMKSFEDIGSY   96 (191)
Q Consensus        39 --------~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~   96 (191)
                              ........ .....+.+|||||..             .+......++..++.++ +++|+++..+......+
T Consensus       106 ~~~gi~~~~~~~~~~~-~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          106 TNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEE-TTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             cCCCccccceEEEEeC-CCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                    00000000 012458899999963             45567777788888766 79999875443332233


Q ss_pred             HHHHHhhcCCCCCcEEEEEecCCCCCCcc-CHHHHHHHHHH--cC-CCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135         97 REQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMNQAQELAEQ--FN-IPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus        97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      +..+    ...+.|+++|+||+|+..... ..+..+.....  .+ .+++++||+++.|+++++++|.+..
T Consensus       185 ~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          185 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHH----CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHh----CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3333    234689999999999976332 22222210001  12 3678899999999999999988743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=4.5e-22  Score=153.00  Aligned_cols=150  Identities=22%  Similarity=0.312  Sum_probs=102.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +..+|+++|+.++|||||+++|.+..+.....+. +.......+..++.  .+.+|||||++.+...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4678999999999999999999876543322211 11111112223444  47899999999998888888899999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC---ccCHH--HHHHHHHHcC--CCEEEeccCCCC
Q psy11135         81 VFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMN--QAQELAEQFN--IPFIKTSAKTRM  150 (191)
Q Consensus        81 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~--~~~~~~~~~~--~~~~~~s~~~~~  150 (191)
                      |+|+++   +.+.+.+    .....    .+.|+++++||+|+...   .+..+  +...++..++  ++++++||++|.
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            999988   3333322    22222    36799999999999642   11111  0011123333  689999999999


Q ss_pred             CHHHHHHHHHH
Q psy11135        151 GVDDAFYTLVR  161 (191)
Q Consensus       151 ~v~~l~~~i~~  161 (191)
                      |+++++++|..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=2.2e-19  Score=128.69  Aligned_cols=119  Identities=23%  Similarity=0.274  Sum_probs=80.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhh-------
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQY-------   71 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-------   71 (191)
                      |++++|+++|.+|+|||||++++++...  ...+.+++..........++.  .+.+|||||+.++......+       
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4689999999999999999999998874  444445444444555555655  48899999986543221111       


Q ss_pred             c--ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135         72 M--RTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDA-EEVPMVLVGNKCDLST  122 (191)
Q Consensus        72 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  122 (191)
                      +  ..+|++++|++++... +... ..|+..+...... ...|+++|+||+|+..
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            1  2689999999997754 3222 3555555543221 1249999999999864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=2.5e-19  Score=137.53  Aligned_cols=148  Identities=16%  Similarity=0.162  Sum_probs=98.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------C------ccCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------E------YDPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|++++|||||+++|++..  +..                        +      ....+-+....  .++..
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~~   83 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFETP   83 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEECS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEecC
Confidence            46899999999999999999998641  110                        0      00111111111  23333


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEEecCCCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---FE---DIGSYREQIKRVKDAEEVP-MVLVGNKCDLST  122 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  122 (191)
                      ...+.+|||||+.++......++..+|++++|+|+++...   |+   .....+.....    .+.| +++|+||+|+..
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence            4568999999999999988899999999999999987531   11   12222222222    2455 999999999873


Q ss_pred             C-c----cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135        123 W-A----VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA  155 (191)
Q Consensus       123 ~-~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l  155 (191)
                      . .    ...++...+++.++     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1 1    12234555666665     68999999999998744

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=9.1e-20  Score=126.48  Aligned_cols=153  Identities=14%  Similarity=0.189  Sum_probs=95.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChh----------hHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQE----------EYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~   71 (191)
                      ..+|+++|++|||||||++++.+..+.....++.+.. .......++   .+.+|||||..          .+......+
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            5789999999999999999998776332223333322 122223333   36789999973          233333334


Q ss_pred             c---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHcC--CCE
Q psy11135         72 M---RTGEGFLLVFAVNSMKSFED--IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQFN--IPF  141 (191)
Q Consensus        72 ~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~--~~~  141 (191)
                      +   ..++++++++|+++..+...  +..|+   .    ..+.|.++|+||+|+....   ...+.+..++...+  +.+
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHH---H----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            4   46889999999988654321  22222   1    2367999999999986521   11233444444444  468


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        142 IKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       142 ~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      +++|++++.+++++++.|.+.+.+
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEEeecCCCCHHHHHHHHHHHHhh
Confidence            899999999999999999887644

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.81  E-value=4.4e-19  Score=133.93  Aligned_cols=161  Identities=16%  Similarity=0.140  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----H---HHHHhhcccCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----S---AMRDQYMRTGE   76 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~---~~~~~~~~~~~   76 (191)
                      .|+++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||..+.    .   .........++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987652 23333333322233344443 234789999996321    1   11112245789


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         77 GFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      .++.++|++ ...+..+..+..++..+.. ....|.++|+||+|+... ...+......+..+.+++++||+++.|++++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence            999999998 5566677777766655431 124699999999998753 2223344445556789999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy11135        156 FYTLVREIKKDKM  168 (191)
Q Consensus       156 ~~~i~~~~~~~~~  168 (191)
                      +++|.+.+.+.+.
T Consensus       316 ~~~i~~~l~~~~~  328 (416)
T 1udx_A          316 KEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999976554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=4.1e-19  Score=146.21  Aligned_cols=158  Identities=19%  Similarity=0.157  Sum_probs=105.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC--Ccc-----CCccceE-EEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-------FVD--EYD-----PTIEDSY-RKQVVIDGETALLDILDTAGQEEYSA   66 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~--~~~-----~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~   66 (191)
                      +.++|+++|++++|||||+++|.+..       +..  ..+     .+.+... .....++.....+.+|||||+.++..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            46899999999999999999998641       000  000     0001000 01122334445588999999999988


Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC---
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN---  138 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~---  138 (191)
                      ....++..+|++++|+|+++..... ...++..+..    .++| +++|+||+|+.....    ..++...+.+.++   
T Consensus       375 ~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          375 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            8888899999999999998853222 2333333333    2567 789999999975211    1234556666665   


Q ss_pred             --CCEEEeccCCC--------CCHHHHHHHHHHHHH
Q psy11135        139 --IPFIKTSAKTR--------MGVDDAFYTLVREIK  164 (191)
Q Consensus       139 --~~~~~~s~~~~--------~~v~~l~~~i~~~~~  164 (191)
                        ++++++||++|        .|+.++++.|.+.+.
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence              68999999999        357888888776554

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=3.9e-20  Score=142.33  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=86.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------C-------ccCCccceEEEEEEEcCe
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------E-------YDPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~-------~~~~~~~~~~~~~~~~~~   49 (191)
                      .++|+++|+.++|||||+++|+...  +..                        +       ...|.... ...+..++ 
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~~~-  120 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFETEH-  120 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEECSS-
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEecCC-
Confidence            5799999999999999999997422  110                        0       00011100 11122333 


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV  125 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  125 (191)
                       ..+.+|||||++++.......+..+|++++|+|+++..   +|+....+...+.. ....+.| +++|+||+|+.....
T Consensus       121 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHHcCCCEEEEEEECccCCCccc
Confidence             45889999999999888888899999999999998852   22111111111111 1123566 999999999965322


Q ss_pred             C-------HHHHHHHHHHc-C------CCEEEeccCCCCCHHHHH
Q psy11135        126 D-------MNQAQELAEQF-N------IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       126 ~-------~~~~~~~~~~~-~------~~~~~~s~~~~~~v~~l~  156 (191)
                      +       .++...+.+.+ +      ++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            2       22355566655 3      569999999999998765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=1.3e-18  Score=138.95  Aligned_cols=127  Identities=15%  Similarity=0.131  Sum_probs=83.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc----------------c-ceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----------------E-DSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      ..+|+++|+.|+|||||++++.+........++.                . +.......+....+.+.+|||||+.++.
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~   88 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV   88 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence            4589999999999999999998543211110000                0 1111122233334568999999999998


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                      .....+++.+|++++++|.++..... ...++..+..    .+.|+++|+||+|+.  ....+...++.+.
T Consensus        89 ~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~--~~~~~~~~~l~~~  152 (665)
T 2dy1_A           89 GEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG--GDYYALLEDLRST  152 (665)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence            88889999999999999987744322 2244444433    368999999999987  3333444444443

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=3.3e-18  Score=133.11  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc----------CCccc-----------eEEEEEEEcCeEEEEEEEeCCC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----------PTIED-----------SYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      +..+|+++|++|+|||||+++|+.........          .+..+           .......++...+.+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            35799999999999999999998642100000          00000           0000112222345589999999


Q ss_pred             hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +.++......++..+|++++|+|+++...     .+...+.......+.|+++|+||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~-----~~t~~~~~~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE-----DRTRKLMEVTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSC-----HHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccch-----HHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence            99988888888999999999999988532     1222222333345789999999999865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=1.4e-18  Score=127.63  Aligned_cols=113  Identities=14%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             EEEEEEeCCChhh-------------HHHHHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135         51 ALLDILDTAGQEE-------------YSAMRDQYMRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGN  116 (191)
Q Consensus        51 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n  116 (191)
                      ..+.+|||||..+             +......++..+|++++++|..+.... .....+...    ....+.|+++|+|
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~----~~~~~~~~i~v~N  206 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE----VDPEGKRTIGVIT  206 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH----HCSSCSSEEEEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHH----hCCCCCcEEEEEc
Confidence            3588999999753             456677788999999999997432211 111122222    2234789999999


Q ss_pred             cCCCCCCcc-CHHHHHHHHHHcCCCEEEeccC---C---CCCHHHHHHHHHHHHHhhh
Q psy11135        117 KCDLSTWAV-DMNQAQELAEQFNIPFIKTSAK---T---RMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       117 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~s~~---~---~~~v~~l~~~i~~~~~~~~  167 (191)
                      |+|+..... ..+........++..++++++.   +   +.|+.++++.+...+....
T Consensus       207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            999976332 2222221111223567777655   3   7899999999988887643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=1.2e-19  Score=132.34  Aligned_cols=157  Identities=20%  Similarity=0.309  Sum_probs=82.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC-CCCCCc--------cCCcc-ceEEEEEEEcCeEEEEEEEeCCCh-------hhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN-HFVDEY--------DPTIE-DSYRKQVVIDGETALLDILDTAGQ-------EEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~   65 (191)
                      +++|+++|+.|+|||||+++|.+. .++...        .++.. .........++....+.+||++|.       +.+.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            589999999999999999998875 333222        11111 111222223444567899999997       3333


Q ss_pred             HHHH-------hhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-c
Q psy11135         66 AMRD-------QYMRT-------------GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-A  124 (191)
Q Consensus        66 ~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~  124 (191)
                      ....       .++..             +++++++.+.+. .+++.+..  ..+...  ....|+++|+||+|+... +
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l--~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI--HNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH--TTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH--HhcCCEEEEEEeCCCCCHHH
Confidence            3322       23222             233444433222 12333321  222222  135799999999998752 2


Q ss_pred             --cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        125 --VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                        ...+++.++++.++++++++||+++ +++++|..+.+.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence              2345677888899999999999999 999999999988864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=6.2e-18  Score=135.49  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=79.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CC------C------------CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FV------D------------EYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      ..+|+++|++|+|||||+++|....  +.      .            ....|... ........  .+.+.+|||||+.
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~-~~~~~~~~--~~~i~liDTPG~~   88 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA-AVTTCFWK--DHRINIIDTPGHV   88 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C-CEEEEEET--TEEEEEECCCSST
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc-ceEEEEEC--CeEEEEEECcCcc
Confidence            5789999999999999999998421  10      0            00111111 11122233  3568999999999


Q ss_pred             hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ++......++..+|++++++|+++..+......|.. +..    .+.|+++|+||+|+..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            999889999999999999999998776665554443 333    2689999999999865

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=6.2e-19  Score=131.81  Aligned_cols=106  Identities=11%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             EEEEEeCCChhhH-------------HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         52 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        52 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      .+.+|||||..+.             ......++..+++++++++..+.+...  ..|+..+.. ....+.|+++|+||+
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLTKI  213 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEECG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEeCC
Confidence            4789999997664             567778899999999999875533211  223332322 334578999999999


Q ss_pred             CCCCC-ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135        119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus       119 D~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+... ....+........++.+|+++++..+.++++.+..+.
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            99763 3344444444556678999999999988877655543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=3.2e-18  Score=123.19  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhh-
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQY-   71 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~-   71 (191)
                      ++++|+++|.+|+|||||+|++++..+.  ....+++..........++  ..+.+|||||+.++.       .....+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            4789999999999999999999987742  3334444333333333343  458899999976532       111122 


Q ss_pred             -cccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135         72 -MRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDA-EEVPMVLVGNKCDLST  122 (191)
Q Consensus        72 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  122 (191)
                       ...+|++++|+|++... +... ..|+..+...... ...|+++|+||+|+..
T Consensus       116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             34799999999987632 3222 3566555443221 1269999999999875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=5.1e-19  Score=133.23  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEE---------------------EEcC-eEEEEEEEeCCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQV---------------------VIDG-ETALLDILDTAG   60 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~D~~g   60 (191)
                      ++|+++|.+|||||||+|++++... ...++.++........                     .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998762 2344434332222111                     1122 246799999999


Q ss_pred             hhhH----HHHHH---hhcccCCEEEEEEeCCCh
Q psy11135         61 QEEY----SAMRD---QYMRTGEGFLLVFAVNSM   87 (191)
Q Consensus        61 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   87 (191)
                      ..+.    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8642    22333   336789999999999875

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=4e-21  Score=151.32  Aligned_cols=155  Identities=16%  Similarity=0.188  Sum_probs=84.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~   50 (191)
                      .++|+++|++++|||||+++|+...  +...                              ..+++.+....  .+....
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~~~~  254 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFESDK  254 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEEeCC
Confidence            5789999999999999999996432  1100                              00011111111  122233


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SF---EDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTW  123 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  123 (191)
                      ..+.||||||+.++.......+..+|++++|+|+++..   .+   ......+..+..    .+.| +++|+||+|+...
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~  330 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTT
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccc
Confidence            45889999999988777777788999999999998532   01   011122222222    2455 9999999998651


Q ss_pred             -cc----CHHHHHHHH-HHcCC-----CEEEeccCCCCCHH--------------HHHHHHHHHH
Q psy11135        124 -AV----DMNQAQELA-EQFNI-----PFIKTSAKTRMGVD--------------DAFYTLVREI  163 (191)
Q Consensus       124 -~~----~~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~--------------~l~~~i~~~~  163 (191)
                       ..    ..++...+. +.+++     +++++||++|.|+.              .+++.|...+
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence             11    112233333 44454     69999999999998              6777665543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=131.04  Aligned_cols=157  Identities=18%  Similarity=0.287  Sum_probs=79.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-------cCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-------H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEY-------DPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-------A   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~   66 (191)
                      +++|+++|++|+|||||++.|++.... ...       .++.. .........++....+.+||++|.....       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            578999999999999999999987753 211       11111 1111111223333468999999975431       1


Q ss_pred             H------------------HHhhcccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc
Q psy11135         67 M------------------RDQYMRTGEGFLLVFAVNSM-KSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-WAV  125 (191)
Q Consensus        67 ~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~  125 (191)
                      +                  ...++.++++.+++|+.... .++.... .|+..+.     .+.|+|+|+||+|+.. ..+
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence            1                  01223445555555555443 3444443 4544442     2689999999999875 222


Q ss_pred             CH--HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        126 DM--NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       126 ~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ..  +.+.+.+...+++++++|+.++.++.+++..+...++
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            22  4566677788999999999999999998888877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=1.1e-16  Score=128.51  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=78.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------Ccc-------CCccceEEEEEEEc-----CeEEEEEEEe
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-----------EYD-------PTIEDSYRKQVVID-----GETALLDILD   57 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-----------~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~D   57 (191)
                      ..+|+++|+.|+|||||+++|+...  +..           ++.       .|... ......++     +..+.+.+||
T Consensus        10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7           10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS-AATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeee-ceEEEEECCccccCCceeEEEEe
Confidence            4689999999999999999997532  110           000       01100 01112222     2337799999


Q ss_pred             CCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      |||+.++......+++.+|++++++|+++.........| .....    .+.|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCccc
Confidence            999999988888899999999999999986544433333 22222    3689999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=5.6e-17  Score=130.02  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------Cc------cCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN--HFVD-----------EY------DPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      ..+|+++|++|+|||||+++|+..  .+..           ++      ...+-.........++  +.+.+|||||+.+
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d   87 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD   87 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence            578999999999999999999852  2210           00      0001111112223333  4588999999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +......+++.+|++++|+|+++..+......|. .+..    .+.|+++|+||+|+..
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence            8888888899999999999999876655554443 3333    2689999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=1.1e-18  Score=127.27  Aligned_cols=133  Identities=21%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             HHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHH
Q psy11135         18 ALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGS   95 (191)
Q Consensus        18 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   95 (191)
                      +|+.++..+.+. ..+.||.++.+......+ .  .+.+||+  ++++..++..+++++|++++|||+++++ ++..+..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~-~--~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDET-G--SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCS-S--SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCC-C--eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence            566666666776 778888887665432222 2  4789999  8888889999999999999999999987 7888888


Q ss_pred             HHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHH
Q psy11135         96 YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        96 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |+..+..    .+.|+++|+||+|+.+... .++..++++.++  ++++++||++|.|++++|..+.
T Consensus       107 ~l~~~~~----~~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          107 FLVLAEK----NELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHH----TTCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHH----CCCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            8876654    3689999999999975221 244667777777  8999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=6.3e-16  Score=114.49  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=90.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeE---------------EEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------ALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~   66 (191)
                      .++|+++|.+|||||||+|++.+... ...++.++.........+++..               ..+.+|||||+.+..+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            47999999999999999999998763 3344333322212223344421               4589999999876542


Q ss_pred             H-------HHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q psy11135         67 M-------RDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQI-----------------------------  100 (191)
Q Consensus        67 ~-------~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~-----------------------------  100 (191)
                      .       ....++.+|++++|+|+++.          +.+..+..+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence            1       12246889999999999862          1222221111111                             


Q ss_pred             ------------------------------HhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccC
Q psy11135        101 ------------------------------KRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAK  147 (191)
Q Consensus       101 ------------------------------~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~  147 (191)
                                                    ..+.....+|+++++|+.|..- .....+....+++..+.+++++||+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                                          0111233589999999998652 2333556677888889999999954

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.70  E-value=1e-17  Score=124.84  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=70.0

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA  130 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  130 (191)
                      +.+.+|||||....   .......+|++++++|....+....+.       .  .....|.++|+||+|+..........
T Consensus       172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHHHHHH
Confidence            45889999995442   223357899999999987654432221       1  11246999999999986421111222


Q ss_pred             HHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        131 QELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       131 ~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .++...          ++.+++++||++|.|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            233322          25789999999999999999999988764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=3.3e-17  Score=122.15  Aligned_cols=155  Identities=19%  Similarity=0.168  Sum_probs=90.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-----cCC-----------------------ccc---------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEY-----DPT-----------------------IED---------------   38 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~-----~~~-----------------------~~~---------------   38 (191)
                      ..+|+|+|.+|||||||+++|.+..+. ...     .|+                       +..               
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            468999999999999999999988753 111     111                       000               


Q ss_pred             ------eEEEEEEE-cCeEEEEEEEeCCChh-------------hHHHHHHhhcccCC-EEEEEEeCCChhhHHHHHHHH
Q psy11135         39 ------SYRKQVVI-DGETALLDILDTAGQE-------------EYSAMRDQYMRTGE-GFLLVFAVNSMKSFEDIGSYR   97 (191)
Q Consensus        39 ------~~~~~~~~-~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~   97 (191)
                            .......+ ......+.+|||||..             .+......++...+ +++++.+.+....-.....++
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~  190 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA  190 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence                  00000001 1112458899999953             34556666666655 455566665422211111222


Q ss_pred             HHHHhhcCCCCCcEEEEEecCCCCCCcc-CHHHHHH--HHHHcC-CCEEEeccCCCCCHHHHHHHHHH
Q psy11135         98 EQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMNQAQE--LAEQFN-IPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        98 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ..    ....+.|+++|+||+|+..... ..+....  +....+ .+++++||+++.|++++++++..
T Consensus       191 ~~----~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          191 KE----VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HH----HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HH----hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22    2335789999999999976332 1221110  000123 25678999999999999998876

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.66  E-value=3.2e-17  Score=121.82  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA  130 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  130 (191)
                      +.+.++||+|....   .......+|.+++++|.++......+..   .+      ...|.++|+||+|+..........
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHHHH
Confidence            34789999996422   2334678999999999987543221111   11      135889999999985311111112


Q ss_pred             HHHHH----------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        131 QELAE----------QFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       131 ~~~~~----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ..+..          .+..+++++|++++.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            22322          12457899999999999999999988764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.65  E-value=2.2e-16  Score=123.54  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCCccceEEEEE-----------------------------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQV-----------------------------------   44 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------------------------   44 (191)
                      ..+|+|+|.+|+|||||+|+|++..+.   ....+++........                                   
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            468999999999999999999998753   233333321110000                                   


Q ss_pred             --EEcCe-EEEEEEEeCCChhh-----------HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11135         45 --VIDGE-TALLDILDTAGQEE-----------YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP  110 (191)
Q Consensus        45 --~~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  110 (191)
                        ..++. ...+.+|||||...           +......++..+|++++|+|+++.........++..+..    .+.|
T Consensus       145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~p  220 (550)
T 2qpt_A          145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDK  220 (550)
T ss_dssp             EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGG
T ss_pred             EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCC
Confidence              00000 02478999999875           556677788899999999999875444444555544432    3579


Q ss_pred             EEEEEecCCCCC
Q psy11135        111 MVLVGNKCDLST  122 (191)
Q Consensus       111 ~ivv~nK~D~~~  122 (191)
                      +++|+||+|+..
T Consensus       221 vilVlNK~Dl~~  232 (550)
T 2qpt_A          221 IRVVLNKADMVE  232 (550)
T ss_dssp             EEEEEECGGGSC
T ss_pred             EEEEEECCCccC
Confidence            999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=1.3e-16  Score=111.34  Aligned_cols=151  Identities=17%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CccCCccc-------eEEEEEEEc------------------CeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-------EYDPTIED-------SYRKQVVID------------------GET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-------~~~~~~~~-------~~~~~~~~~------------------~~~   50 (191)
                      ..+|+++|.+|+|||||++++.......       ....++.+       ... ...++                  ...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIK-AEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCE-EEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCc-EEEecCCceeecccHHHHHHHHhcCC
Confidence            4689999999999999999998652111       00000000       000 01111                  122


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQ  129 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~  129 (191)
                      +.+.+|||+|+....   ..+....+.+++++|+++....  ...+.. .      .+.|.++|+||+|+... ....++
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPE-I------FRVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHH-H------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhh-h------hhcCCEEEEecccCCcchhhHHHH
Confidence            457789999851110   1112356789999998765321  111111 1      13689999999998642 235555


Q ss_pred             HHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        130 AQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       130 ~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      .....+..  +++++++|+++|.|+++++++|.+.+...
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            65555554  46899999999999999999998877553

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.64  E-value=2.4e-18  Score=120.62  Aligned_cols=57  Identities=23%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             CcEEEEEecCCCCCC-ccCHHHHHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        109 VPMVLVGNKCDLSTW-AVDMNQAQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       109 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      .|.++|+||+|+... ....++...+++..  +++++++||++|.|++++|++|.+.+.+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            578999999998652 24566666666654  5789999999999999999999887754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.64  E-value=1.2e-15  Score=113.64  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcC-------------------eEEEEEEEeCCChhh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDG-------------------ETALLDILDTAGQEE   63 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~   63 (191)
                      ++|+++|.+|+|||||++++.+.. ....++.++.........+++                   ....+.+|||||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            689999999999999999999765 233443332211111122221                   224589999999765


Q ss_pred             HH-------HHHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHH--------------------------
Q psy11135         64 YS-------AMRDQYMRTGEGFLLVFAVNSMK----------SFEDIGSYREQI--------------------------  100 (191)
Q Consensus        64 ~~-------~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~--------------------------  100 (191)
                      ..       ......++.+|++++|+|+++..          ....+..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       22233478999999999997521          111111000000                          


Q ss_pred             --------------------------------HhhcCCCCCcEEEEEecCCCC--CC--ccCHHHHHHHHHHcCCCEEEe
Q psy11135        101 --------------------------------KRVKDAEEVPMVLVGNKCDLS--TW--AVDMNQAQELAEQFNIPFIKT  144 (191)
Q Consensus       101 --------------------------------~~~~~~~~~p~ivv~nK~D~~--~~--~~~~~~~~~~~~~~~~~~~~~  144 (191)
                                                      ..+......|+++++||.|..  ..  ....+..+.+++..+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                                            000012247999999999742  22  334566777888889999999


Q ss_pred             ccCCCCCHHHHHH
Q psy11135        145 SAKTRMGVDDAFY  157 (191)
Q Consensus       145 s~~~~~~v~~l~~  157 (191)
                      ||+...++.++..
T Consensus       242 SAk~E~el~eL~~  254 (368)
T 2dby_A          242 SARLEAELAELSG  254 (368)
T ss_dssp             CHHHHHHHHTSCH
T ss_pred             echhHHHHHHhch
Confidence            9887555554443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.63  E-value=3.5e-15  Score=106.75  Aligned_cols=114  Identities=17%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             EEEEEEeCCChhhHHHHHH------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEYSAMRD------QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.+|||||..+......      ..+.. +++++++|.....+..................+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4588999999876543211      23455 7888888765432222222111111111111257999999999987521


Q ss_pred             cCHHHHHH----------------------------HHHHcC--CCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        125 VDMNQAQE----------------------------LAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       125 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      . .++..+                            +++.++  .+++++|++++.|+++++++|.+.+...
T Consensus       188 ~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          188 E-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             H-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             c-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            1 111111                            123433  4899999999999999999998887653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=1.3e-14  Score=113.46  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-----------------CCCccC-------CccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-----------------VDEYDP-------TIEDSYRKQVVIDGETALLDILDTAG   60 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-----------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g   60 (191)
                      +|+++|+.++|||||..+|+...-                 ..++.+       |... ....+.+++  +.+.|+||||
T Consensus        33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s-~~~~~~~~~--~~iNlIDTPG  109 (548)
T 3vqt_A           33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTT-SVMQFPYRD--RVVNLLDTPG  109 (548)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTT-TEEEEEETT--EEEEEECCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEee-ceEEEEECC--EEEEEEeCCC
Confidence            689999999999999999963211                 011110       1111 112233444  4588999999


Q ss_pred             hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +.++.......++.+|++++|+|+...-......-| +....    .++|.++++||+|...
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchh
Confidence            999999999999999999999999884433333333 33333    3789999999999754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.7e-14  Score=105.63  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTG   75 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~   75 (191)
                      -+|+++|.|+||||||+|+|++.. ...+++.++.+.......+++..  ++++||||..+..       ...-..++.+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            479999999999999999999876 45677778877777777788776  7889999964321       1122346789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCCcEEEEEecCCCCC---------CccCHHHHHHHHHHcCCCEEEec
Q psy11135         76 EGFLLVFAVNSMKSFEDIGSYREQIKRV-KDAEEVPMVLVGNKCDLST---------WAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~---------~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      |++++|+|..++..  .......++..+ ....+.|.+++.||.|...         ...+.++.+.+...+.+.--++-
T Consensus       151 d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          151 NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            99999999998643  222233333322 1234578899999999743         33566777777776665333333


Q ss_pred             cCCCCCHHHHHH
Q psy11135        146 AKTRMGVDDAFY  157 (191)
Q Consensus       146 ~~~~~~v~~l~~  157 (191)
                      -..+...+++.+
T Consensus       229 ~~~nv~eddl~d  240 (376)
T 4a9a_A          229 FRCDATVDDLID  240 (376)
T ss_dssp             ECSCCCHHHHHH
T ss_pred             ecccCCHHHHHH
Confidence            334445555544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=4.3e-15  Score=121.44  Aligned_cols=114  Identities=24%  Similarity=0.310  Sum_probs=81.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc--------------c--CCccce-EEEEEE------------EcCeEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEY--------------D--PTIEDS-YRKQVV------------IDGETA   51 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~--------------~--~~~~~~-~~~~~~------------~~~~~~   51 (191)
                      ..+|+++|+.|+|||||+++|+...  .....              .  .|.... ....+.            .++..+
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   98 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence            4689999999999999999998642  11100              0  011111 111111            234477


Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      .+.+|||||+.++...+..+++.+|++++|+|+++..+......|.... .    .+.|+++|+||+|+.
T Consensus        99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence            8999999999999999999999999999999999977766655444322 2    368999999999986

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.58  E-value=7.4e-15  Score=117.70  Aligned_cols=154  Identities=21%  Similarity=0.179  Sum_probs=94.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccce------------------------------------------
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDS------------------------------------------   39 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~------------------------------------------   39 (191)
                      -.+|+|+|.+++|||||+|+|.+..+ +....+++...                                          
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            35899999999999999999999875 33322222100                                          


Q ss_pred             ---------EEEEEEEcCeEEEEEEEeCCChhh-------------HHHHHHhhc-ccCCEEEEEEeCCChhhHHHHHHH
Q psy11135         40 ---------YRKQVVIDGETALLDILDTAGQEE-------------YSAMRDQYM-RTGEGFLLVFAVNSMKSFEDIGSY   96 (191)
Q Consensus        40 ---------~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~   96 (191)
                               ....+..+ ....+.++||||...             +......++ ..+|++++|+|+++.........+
T Consensus       131 ~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             STTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                     00001111 112377999999443             233344443 578999999999874322222223


Q ss_pred             HHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----cC-CCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         97 REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----FN-IPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      +..+    ...+.|+++|+||+|+............ .+.    .+ .+++++||+++.|++++++++...
T Consensus       210 l~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          210 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHH----HhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            3233    3346899999999999863322111111 111    12 356789999999999999998873

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.57  E-value=1.3e-15  Score=113.01  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA  130 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  130 (191)
                      +.+.++||||.......   ....+|++++++|.+..+.+..+..   ..      .+.|.++|+||+|+..........
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHH
Confidence            45889999997654332   3578999999999976433211111   00      135889999999986521111111


Q ss_pred             HHHH---HHc-------CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        131 QELA---EQF-------NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       131 ~~~~---~~~-------~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      .++.   ...       ..+++++||++|.|+++++++|...+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1222   121       457899999999999999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=5.6e-15  Score=117.61  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCC---CccC-Cccc-----------eEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--FVD---EYDP-TIED-----------SYRKQVVIDGETALLDILDTAGQEEYSAM   67 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--~~~---~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   67 (191)
                      +|+++|+.++|||||..+|+...  ...   .... +..+           .......+....+.+.++|||||.++...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            68999999999999999997322  110   0000 0000           00111122333445889999999999999


Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ....++.+|++++|+|+...-.... ...++....+    ++|.++++||+|...
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~----~lp~i~~INKmDr~~  133 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM----GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc----CCCeEEEEecccccc
Confidence            9999999999999999987332222 2333344443    679999999999754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.48  E-value=9.6e-14  Score=102.62  Aligned_cols=102  Identities=16%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQ  129 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~  129 (191)
                      +.+.++||||......   .....+|.+++++|....+....+...   +.      ..+.++++||+|+.. ...+...
T Consensus       148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHH
Confidence            4588999999764332   234689999999998654321111110   11      236688889999754 2222223


Q ss_pred             HHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        130 AQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       130 ~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      .+.+...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3334331          2457899999999999999999988764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.46  E-value=2.4e-12  Score=103.81  Aligned_cols=112  Identities=18%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--------CC-----CCccC-------CccceEEEEEEEc-----CeEEEEEEEeCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH--------FV-----DEYDP-------TIEDSYRKQVVID-----GETALLDILDTA   59 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~--------~~-----~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~D~~   59 (191)
                      +|+++|+.++|||||..+|+...        ..     .++.+       |.. .....+.+.     ...+.+.++|||
T Consensus        15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~-s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITIT-SAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEE-eeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            69999999999999999986321        10     00000       000 001112222     235779999999


Q ss_pred             ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ||.++.......++-+|++++|+|+...-..... ..++....+    ++|.++++||+|...
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc----CCCeEEEEccccccC
Confidence            9999999999999999999999999874332222 233333332    689999999999743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.37  E-value=1.9e-12  Score=94.33  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=76.4

Q ss_pred             hhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cC-HHHHHHHHHHc
Q psy11135         61 QEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VD-MNQAQELAEQF  137 (191)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~  137 (191)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+..    .++|.++|+||+|+.+.. +. .++...+++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence            4455566667899999999999999986 88888888876654    468999999999997532 12 34456667778


Q ss_pred             CCCEEEeccCCCCCHHHHHHHHH
Q psy11135        138 NIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus       138 ~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      +++++++||+++.|++++++.+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            99999999999999999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.37  E-value=8.3e-13  Score=98.81  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~   66 (191)
                      .++|+++|.+|||||||+|++.+... ...++.++.........+++.               ...+.+||+||.....+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            57899999999999999999998764 233333333222333334332               23489999999876544


Q ss_pred             -------HHHhhcccCCEEEEEEeCCChhh
Q psy11135         67 -------MRDQYMRTGEGFLLVFAVNSMKS   89 (191)
Q Consensus        67 -------~~~~~~~~~~~~i~v~d~~~~~s   89 (191)
                             ....+++.+|++++|+|+.+.++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence                   34556789999999999976443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=3.1e-11  Score=90.49  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhh--
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEE--   63 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~--   63 (191)
                      ..+++++|++|||||||+|+|.+...  ...++.++.........+++.               ...+.+||+||...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            46899999999999999999998764  334444444333444455541               13478999999543  


Q ss_pred             -----HHHHHHhhcccCCEEEEEEeCCC
Q psy11135         64 -----YSAMRDQYMRTGEGFLLVFAVNS   86 (191)
Q Consensus        64 -----~~~~~~~~~~~~~~~i~v~d~~~   86 (191)
                           ........++.+|++++++|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 22233445678999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.25  E-value=6.5e-12  Score=85.35  Aligned_cols=105  Identities=11%  Similarity=0.057  Sum_probs=68.5

Q ss_pred             CChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHH---Hhhc-CCCCCcEEEEEecC-CCCCCccCHHHHHHH
Q psy11135         59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI---KRVK-DAEEVPMVLVGNKC-DLSTWAVDMNQAQEL  133 (191)
Q Consensus        59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~-~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  133 (191)
                      .|+...+.+|..|+.++|++|||+|.+|.+..+ .+..+..+   .... ...+.|++|++||. |+. ...+..+..+.
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp-~Ams~~EI~e~  187 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV-KRMPCFYLAHE  187 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS-CBCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc-CCCCHHHHHHH
Confidence            478889999999999999999999999876443 33333222   2211 13578999999996 564 34555554332


Q ss_pred             HHH----cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        134 AEQ----FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       134 ~~~----~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ...    ..+.+..|||.+|+|+.+.++||.+.+..
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            211    23458899999999999999999876644

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.19  E-value=2.4e-12  Score=96.34  Aligned_cols=139  Identities=14%  Similarity=0.062  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC-----C-C-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN-----H-F-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AM   67 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~   67 (191)
                      ..+|+++|.+|+|||||+|+|.+.     . . ....+.++....  ...++..   +.++||||.....        ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999976     2 2 223333333222  2233332   6789999954221        12


Q ss_pred             HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135         68 RDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        68 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ...++  ...++++++++....-.+..+..     ..+....+.|+++++||.|.............+.+..|..+.+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCC
Confidence            22222  56788888888743211111111     122334568999999999988755455556677788887777766


Q ss_pred             cCCCCC
Q psy11135        146 AKTRMG  151 (191)
Q Consensus       146 ~~~~~~  151 (191)
                      +.+..+
T Consensus       312 ~~~~~~  317 (369)
T 3ec1_A          312 KRYAAE  317 (369)
T ss_dssp             GGGTTT
T ss_pred             chhhhh
Confidence            655443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.14  E-value=2.5e-10  Score=85.38  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=74.9

Q ss_pred             ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH----HHH
Q psy11135         60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE----LAE  135 (191)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~  135 (191)
                      ..+++..++..+++.++++++|+|++++.     ..|...+..+.  .+.|+++|+||+|+.+.....+...+    +++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence            45788899999999999999999999853     34555555543  26899999999999875554444433    366


Q ss_pred             HcCC---CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        136 QFNI---PFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       136 ~~~~---~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ..|.   +++++||++|.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6777   799999999999999999987643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.11  E-value=1.5e-10  Score=82.46  Aligned_cols=106  Identities=10%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             CCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHH---HHH-hhcCCCCCcEEEEEec-CCCCCCccCHHHHHH
Q psy11135         58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE---QIK-RVKDAEEVPMVLVGNK-CDLSTWAVDMNQAQE  132 (191)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~~~~~~p~ivv~nK-~D~~~~~~~~~~~~~  132 (191)
                      .+||...+..|..|+.++|++|+|+|.+|.+.++ ....+.   .+. ......+.|++|++|| .|+.. ..+..+..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~-Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC-BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC-CCCHHHHHH
Confidence            4578889999999999999999999999977543 222222   222 2111357899999997 47643 445444332


Q ss_pred             HHHH----cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        133 LAEQ----FNIPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       133 ~~~~----~~~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ....    ..+.+..|||.+|+|+.+.++||.+.+..
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            2111    22458899999999999999999987754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.09  E-value=4.2e-10  Score=85.04  Aligned_cols=25  Identities=36%  Similarity=0.717  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++++|+.|+|||||++.|.+..+
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccc
Confidence            5699999999999999999998753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=5.7e-12  Score=94.18  Aligned_cols=134  Identities=12%  Similarity=0.060  Sum_probs=78.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------A   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~   66 (191)
                      ..+|+++|.+|+|||||+|+|.+...        ....+.++...  ....+++.   +.++||||.....        .
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence            35799999999999999999997631        12222232222  12233333   6789999953221        1


Q ss_pred             HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEe
Q psy11135         67 MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKT  144 (191)
Q Consensus        67 ~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  144 (191)
                      ....+  ....+.++++++....-.+..+..     .......+.|+++++||+|.............+.+..|..+.+.
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSS
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCccCCC
Confidence            22222  345677778877633211111111     12233456899999999999875545555566777788766655


Q ss_pred             cc
Q psy11135        145 SA  146 (191)
Q Consensus       145 s~  146 (191)
                      ++
T Consensus       310 ~~  311 (368)
T 3h2y_A          310 TP  311 (368)
T ss_dssp             CH
T ss_pred             ch
Confidence            53

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.06  E-value=2.5e-10  Score=85.35  Aligned_cols=97  Identities=19%  Similarity=0.310  Sum_probs=73.6

Q ss_pred             ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH----HHH
Q psy11135         60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE----LAE  135 (191)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~  135 (191)
                      .++++..++..++..++++++|+|++++.+     .|...+..+.  .+.|+++|+||+|+.+.....+...+    +++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence            477899999999999999999999999763     3333344432  26899999999999875544444433    356


Q ss_pred             HcCC---CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        136 QFNI---PFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       136 ~~~~---~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ..|.   +++.+||++|.|++++++.|.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            6676   689999999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.05  E-value=3.9e-10  Score=87.17  Aligned_cols=149  Identities=15%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH------hCCC--CC--CccCCcc-------c--eEEEEE--E--------------Ec
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLI------QNHF--VD--EYDPTIE-------D--SYRKQV--V--------------ID   47 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~------~~~~--~~--~~~~~~~-------~--~~~~~~--~--------------~~   47 (191)
                      ...|+++|.+||||||++++|.      +...  ..  .+.+...       .  ......  .              ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            3579999999999999999998      3331  11  1111100       0  000000  0              00


Q ss_pred             CeEEEEEEEeCCChhhHH-HH---HHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEecCCC
Q psy11135         48 GETALLDILDTAGQEEYS-AM---RDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGNKCDL  120 (191)
Q Consensus        48 ~~~~~~~~~D~~g~~~~~-~~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~  120 (191)
                      ...+.+.|+||||..... ..   ....  ...+|.+++|+|.......   ......+..     ..|+ .+|+||+|.
T Consensus       181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECTTS
T ss_pred             HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCCcc
Confidence            023458899999965321 11   1111  2268999999999774331   122222322     1464 899999998


Q ss_pred             CCCccCHHHHHHHHHHcCCCE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy11135        121 STWAVDMNQAQELAEQFNIPF------------------IKTSAKTRMG-VDDAFYTLVRE  162 (191)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~l~~~i~~~  162 (191)
                      .... .  .+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~-g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKG-G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCC-T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccch-H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            7422 1  1223444555554                  3368888888 98888887665

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.99  E-value=1.9e-08  Score=75.98  Aligned_cols=156  Identities=14%  Similarity=0.103  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHHh-hc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRDQ-YM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~-~~   72 (191)
                      ..++++|++|+|||||+|.+.+...+..      ...++..  ..... ......+.++|++|...    ....... .+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            4789999999999999999998442111      1111111  11111 11111367899998542    2222222 23


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------CccCHHHH----HHHH----HH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------WAVDMNQA----QELA----EQ  136 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~----~~~~----~~  136 (191)
                      ...+..++ ++......  .-..+...+..    .+.|+++|.||.|+.-        .....++.    .++.    .+
T Consensus       147 ~~~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          147 YEYDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GGCSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            44455554 77763111  11122233333    2579999999998631        11223332    2332    12


Q ss_pred             cC---CCEEEecc--CCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        137 FN---IPFIKTSA--KTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       137 ~~---~~~~~~s~--~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      .|   ..++.+|+  .++.|++++.+.+...+.+....
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~  257 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH  257 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence            22   36788999  56677999999999988776543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.98  E-value=7.4e-09  Score=74.18  Aligned_cols=25  Identities=36%  Similarity=0.765  Sum_probs=22.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++++|+.|+|||||++.|++..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=6.7e-09  Score=74.87  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=70.5

Q ss_pred             EEeCCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135         55 ILDTAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ  131 (191)
Q Consensus        55 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  131 (191)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..+       .  .+.|.++|+||+|+.+.. ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l--~~kp~ilVlNK~DL~~~~-~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L--KNKPRIMLLNKADKADAA-VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C--SSSCEEEEEECGGGSCHH-HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H--CCCCEEEEEECcccCCHH-HHHHHH
Confidence            34578876 44556666789999999999999977653  22222       1  368999999999997521 112223


Q ss_pred             HHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       132 ~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++.+..+++++++|+.++.|++++++.+.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44555678999999999999999999988877643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=9.4e-09  Score=74.10  Aligned_cols=55  Identities=25%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      .++|+++|.+|+|||||+|++.+....  ...+.++....  .... +..  +.++||||..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~--~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKE--LELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTT--EEEEECCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCC--EEEEECcCcC
Confidence            578999999999999999999987632  22222332221  1222 223  6789999954

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.72  E-value=3.3e-08  Score=75.08  Aligned_cols=86  Identities=16%  Similarity=0.064  Sum_probs=51.5

Q ss_pred             EEEEEEeCCChhhH-----HHHHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEY-----SAMRD-QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||||....     ..+.. .....+|.+++|.|......-   ......+...    -.+..+|+||.|...  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~--  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA--  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc--
Confidence            55789999994321     11111 112357889999998764332   2222333331    235679999999864  


Q ss_pred             cCHHHHHHHHHHcCCCEEEecc
Q psy11135        125 VDMNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s~  146 (191)
                       ....+..+....+.|+.+++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             233445566678888887774

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.66  E-value=1.1e-08  Score=72.91  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      ++++++|.+|+|||||+|++.+.....  ...+++....  ....+ .  .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~--~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE-N--GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT-T--SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC-C--CEEEEECCCccc
Confidence            489999999999999999999877432  2222222111  11222 2  368899999653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.58  E-value=4.9e-08  Score=76.78  Aligned_cols=60  Identities=22%  Similarity=0.152  Sum_probs=37.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEE----EE-cCeEEEEEEEeCCChh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VI-DGETALLDILDTAGQE   62 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~g~~   62 (191)
                      .++|+|+|.+|+|||||+|+|.+....-...+++........    .. ......+.++||||..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            478999999999999999999987632122222221111111    11 1122347889999954

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.43  E-value=4.6e-07  Score=69.03  Aligned_cols=83  Identities=20%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-c-EEEEEecCCCCC
Q psy11135         51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-P-MVLVGNKCDLST  122 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~  122 (191)
                      +.+.++||||....+.    .....  ...+|.++++.|......   .......+..     .. | ..+|+||+|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-----AVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-----TSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-----cccCCeEEEEeCCCCcc
Confidence            4578999999654221    11111  235889999999865432   1122222221     24 5 899999999754


Q ss_pred             CccCHHHHHHHHHHcCCCEEEe
Q psy11135        123 WAVDMNQAQELAEQFNIPFIKT  144 (191)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~  144 (191)
                      .   ...+..+....+.|+.++
T Consensus       253 ~---~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K---GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T---THHHHHHHHHSSCCEEEE
T ss_pred             c---hHHHHHHHHHHCCCEEEe
Confidence            2   122334666777776554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.43  E-value=8.7e-08  Score=72.76  Aligned_cols=91  Identities=11%  Similarity=0.020  Sum_probs=54.0

Q ss_pred             EEEEEEEeCCChhh------HHHHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135         50 TALLDILDTAGQEE------YSAMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS  121 (191)
Q Consensus        50 ~~~~~~~D~~g~~~------~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (191)
                      .+.+.++||||...      ........  ....+.+++|.|.......   ......+...    -.+..+|+||.|..
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~----~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA----SPIGSVIITKMDGT  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH----CSSEEEEEECGGGC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc----cCCcEEEEeccccc
Confidence            34577899999433      11111111  1246889999998764332   2233333332    13678999999976


Q ss_pred             CCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135        122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      .   ....+.......+.|+.+++.  |+++
T Consensus       252 a---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 A---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             S---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             c---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            4   334455666678899888775  5544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.38  E-value=1.5e-06  Score=63.10  Aligned_cols=92  Identities=14%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             EEEEEEEeCCChhh--HHH-HHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCC
Q psy11135         50 TALLDILDTAGQEE--YSA-MRD-----QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDL  120 (191)
Q Consensus        50 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~  120 (191)
                      .+.+.++||||...  ... ...     .....+|.++++.|......   .......+..     ..+ ..+|+||.|.
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDG  251 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCC
Confidence            34578999999765  322 111     12346889999998864321   2222222322     245 7889999997


Q ss_pred             CCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135        121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      ..   ....+..+....+.|+.+++  .|+++++
T Consensus       252 ~~---~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          252 TA---KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             CT---THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             Cc---chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            54   23445567788889988876  4555543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.36  E-value=1.9e-07  Score=66.55  Aligned_cols=93  Identities=11%  Similarity=-0.039  Sum_probs=61.1

Q ss_pred             CCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135         58 TAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ  136 (191)
Q Consensus        58 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  136 (191)
                      .|||.. ........+.++|+++.|+|+.++.+....  .   +. +.   +.|.++|+||+|+.+... .+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll---~k~~iivlNK~DL~~~~~-~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS---RKETIILLNKVDIADEKT-TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT---TSEEEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc---CCCcEEEEECccCCCHHH-HHHHHHHHHH
Confidence            467663 233455668899999999999987654321  0   11 11   689999999999975211 1222344556


Q ss_pred             cCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135        137 FNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus       137 ~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      .|.++ .+|+.++.|++++++.+..
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            68888 9999999999999887644

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.35  E-value=1.7e-06  Score=68.85  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      .|+|+|+.|||||||++.+.+...
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             eEEEECCCCChHHHHHHHHhCCCC
Confidence            389999999999999999998653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.23  E-value=4e-07  Score=66.19  Aligned_cols=86  Identities=14%  Similarity=0.073  Sum_probs=58.8

Q ss_pred             HHhhcccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHHcCCCEEE
Q psy11135         68 RDQYMRTGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQFNIPFIK  143 (191)
Q Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~  143 (191)
                      .....+++|.+++|+|+.++.. ...+..++    ......++|.++|+||+|+.+...   ..+....+....|.+++.
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L----~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFL----VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHH----HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH----HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            3456889999999999987654 33333333    222334789999999999986432   123344555567899999


Q ss_pred             eccCCCCCHHHHHH
Q psy11135        144 TSAKTRMGVDDAFY  157 (191)
Q Consensus       144 ~s~~~~~~v~~l~~  157 (191)
                      +|+.++.|+++++.
T Consensus       156 ~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          156 TSSKDQDSLADIIP  169 (307)
T ss_dssp             CCHHHHTTCTTTGG
T ss_pred             EecCCCCCHHHHHh
Confidence            99998888776554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.14  E-value=1.2e-05  Score=59.67  Aligned_cols=84  Identities=18%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHHHcCCCEEEeccCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAEQFNIPFIKTSAKT  148 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~  148 (191)
                      ..+++|.+++|.+..-..+...+..++.....    .++|.++|+||+|+.+....  .+.........|++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988775432233334444333222    25788999999999763210  1122334456789999999999


Q ss_pred             CCCHHHHHHH
Q psy11135        149 RMGVDDAFYT  158 (191)
Q Consensus       149 ~~~v~~l~~~  158 (191)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999888764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.09  E-value=5.5e-06  Score=60.88  Aligned_cols=90  Identities=17%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             EEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135         53 LDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD  126 (191)
Q Consensus        53 ~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  126 (191)
                      +.++|++|.....    ......  .-..|..+++.|.....   .+......+....    ....+++||.|...   .
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~----~it~iilTKlD~~a---~  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV----KIDGIILTKLDADA---R  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS----CCCEEEEECGGGCS---C
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc----CCCEEEEeCcCCcc---c
Confidence            5579999953211    111111  12367888889875543   2333333333221    23488899999743   2


Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135        127 MNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      ...+..+....+.|+.+++  +|+++++
T Consensus       284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            2335567777889988877  5555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.99  E-value=8.4e-07  Score=68.48  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=54.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE---EEEEEcCeEEEEEEEeCCChhh--HHHHH--------H
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETALLDILDTAGQEE--YSAMR--------D   69 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~   69 (191)
                      .+.|+++|.+|+||||+.++|......... ++.  .+.   ......+......+||..|...  ....+        .
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~-~t~--~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV-PTR--EFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEE--EEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCC-Cce--EEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999754311100 000  000   0000011112245799998732  22222        4


Q ss_pred             hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy11135         70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR  102 (191)
Q Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  102 (191)
                      .++...++.++++|.++.. ......|...+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHh
Confidence            4555678888999999873 4444455444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.93  E-value=2.1e-05  Score=60.00  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-|.|+|++++|||||+|.+++.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            34789999999999999999864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.76  E-value=1.9e-05  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.703  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|++|+|||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.72  E-value=0.00025  Score=54.07  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCChhhHHH-HHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCC
Q psy11135         50 TALLDILDTAGQEEYSA-MRD-----QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLST  122 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  122 (191)
                      .+.+.++||||...... ...     ......+.+++|.|......   .......+..     ..+ .-+|+||.|...
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCCc
Confidence            34588999999543211 111     11336788889999865432   2222222322     133 357999999754


Q ss_pred             CccCHHHHHHHHHHcCCCEEEe
Q psy11135        123 WAVDMNQAQELAEQFNIPFIKT  144 (191)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~  144 (191)
                      ..   ..+..+....+.|+.++
T Consensus       255 ~~---g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          255 RG---GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             CC---THHHHHHHHHCCCEEEE
T ss_pred             cH---HHHHHHHHHHCCCeEEE
Confidence            22   23445666667664443

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.68  E-value=1.6e-05  Score=54.19  Aligned_cols=86  Identities=9%  Similarity=0.041  Sum_probs=54.9

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQ  129 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~  129 (191)
                      +.+.++|+|+..  .......+..+|.++++...+...  ..+...+..+..... .+..++.+|+|+.|....  ..++
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~~~~  149 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--MLNV  149 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--EEHH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--HHHH
Confidence            567899999865  334445566799999988876654  556666666654321 235677999999985431  2234


Q ss_pred             HHHHHHHcCCCEE
Q psy11135        130 AQELAEQFNIPFI  142 (191)
Q Consensus       130 ~~~~~~~~~~~~~  142 (191)
                      ..+..+.++.+++
T Consensus       150 ~~~~l~~~~~~vl  162 (206)
T 4dzz_A          150 LKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHTCCBC
T ss_pred             HHHHHHHcCCcee
Confidence            4555555666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.67  E-value=1.3e-05  Score=58.32  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            57899999999999999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.66  E-value=2.9e-05  Score=51.99  Aligned_cols=22  Identities=41%  Similarity=0.696  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.62  E-value=3.6e-05  Score=52.43  Aligned_cols=22  Identities=41%  Similarity=0.647  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999999863

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.57  E-value=5e-05  Score=51.09  Aligned_cols=25  Identities=28%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+...|++.|.+||||||+.+.|..
T Consensus         1 M~~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            1 MKNKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6667899999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.55  E-value=6.3e-05  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+...|++.|.+||||||+.+.|..
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            6778899999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.55  E-value=0.00024  Score=51.60  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|++|+|||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            46899999999999999998 54

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.53  E-value=5.6e-05  Score=51.47  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|+++|+.|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5789999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.52  E-value=5.3e-05  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.|+++|++||||||+++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35889999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.52  E-value=8e-05  Score=50.91  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+...|++.|.+||||||+.+.|..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            5667899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.49  E-value=6.7e-05  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+..
T Consensus        23 ~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6899999999999999998653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.48  E-value=7e-05  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|+.|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            46899999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.47  E-value=9.5e-05  Score=49.17  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |...-|++.|.+||||||+.+.|...
T Consensus         1 m~~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            1 MTTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            44557899999999999999999763

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.46  E-value=7.5e-05  Score=51.64  Aligned_cols=23  Identities=39%  Similarity=0.712  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.43  E-value=9.8e-05  Score=50.58  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ...|+++|++|||||||++.|.+..
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999987643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.43  E-value=9.5e-05  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|+++|++||||||+++.|.+..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999998654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.42  E-value=0.00012  Score=49.68  Aligned_cols=23  Identities=39%  Similarity=0.696  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      --|+++|++|||||||++.|.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999854

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.41  E-value=0.0001  Score=48.31  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998755

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.41  E-value=0.0001  Score=49.59  Aligned_cols=21  Identities=38%  Similarity=0.676  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.41  E-value=0.00014  Score=48.68  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +...|+++|.+||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.39  E-value=0.00011  Score=48.61  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.39  E-value=0.00013  Score=49.72  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ...|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.38  E-value=0.00011  Score=50.14  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-|+++|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.37  E-value=0.00015  Score=48.05  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-.|+++|++||||||+++.+.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.37  E-value=0.00012  Score=49.28  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.36  E-value=0.00017  Score=47.89  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.34  E-value=0.00011  Score=51.51  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.34  E-value=0.00013  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.33  E-value=0.00011  Score=48.79  Aligned_cols=19  Identities=32%  Similarity=0.658  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      ++++|++|||||||++.+.
T Consensus        12 ~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEECCTTSCHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            6899999999999999643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.33  E-value=0.00013  Score=48.23  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQL   23 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l   23 (191)
                      .-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.33  E-value=0.00015  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.33  E-value=0.00014  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.|+++|++||||||+++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999998653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.33  E-value=0.00016  Score=50.10  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.33  E-value=0.00012  Score=54.32  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      .++++|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            478999999999999999997653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.32  E-value=0.00017  Score=49.34  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|+++|+.|||||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.31  E-value=0.00016  Score=49.73  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.29  E-value=0.00016  Score=50.78  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.29  E-value=0.00013  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999997754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.28  E-value=0.00018  Score=50.63  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~   24 (191)
                      -.|+++|++||||||+++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999998

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.28  E-value=0.00016  Score=48.83  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.26  E-value=0.00022  Score=47.83  Aligned_cols=24  Identities=17%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.26  E-value=0.00024  Score=48.27  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +...|++.|.+||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.25  E-value=0.00018  Score=51.16  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            4789999999999999998763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.25  E-value=0.00021  Score=48.50  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.25  E-value=0.00021  Score=48.99  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.25  E-value=0.00017  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|+|||||++.+.+-.
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.25  E-value=0.00016  Score=48.27  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+++.|++|+|||||++.+.+.-
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00019  Score=48.79  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|.+||||||+.+.|...
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.24  E-value=0.00025  Score=49.85  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.++|+++|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.24  E-value=0.00017  Score=51.37  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.24  E-value=0.00016  Score=50.60  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.23  E-value=0.00021  Score=48.65  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+|+++|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999977

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.23  E-value=0.00017  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.23  E-value=0.00027  Score=47.55  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.23  E-value=0.00023  Score=48.33  Aligned_cols=21  Identities=29%  Similarity=0.639  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.22  E-value=0.00021  Score=48.54  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      --|+++|++||||||+++.+.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.22  E-value=0.00023  Score=47.37  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -++++|++|+|||||++++.+.
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4789999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.22  E-value=0.00013  Score=48.64  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=16.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+...|++.|.+||||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.21  E-value=0.00022  Score=51.74  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5789999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.00017  Score=49.43  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.20  E-value=0.00027  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.20  E-value=0.00019  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.20  E-value=0.00029  Score=47.86  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=21.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+.|++.|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.20  E-value=0.00019  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.20  E-value=0.00033  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +...|++.|.+|+||||+++.+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.20  E-value=0.00022  Score=50.17  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.19  E-value=0.0002  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            36899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.19  E-value=0.00019  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.19  E-value=0.00023  Score=50.31  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999886

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.19  E-value=0.00022  Score=50.29  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.19  E-value=0.00024  Score=48.80  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.19  E-value=0.00028  Score=48.70  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00021  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.18  E-value=0.0003  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.17  E-value=0.00025  Score=51.52  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|++|||||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            46899999999999999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.17  E-value=0.00021  Score=50.61  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.17  E-value=0.00026  Score=46.96  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.17  E-value=0.00025  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999886

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.16  E-value=0.00022  Score=50.29  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.15  E-value=0.00026  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-.|++.|.+|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.14  E-value=0.00026  Score=50.31  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.14  E-value=0.00028  Score=51.53  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|+++|+.|||||||++.+.+..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHhhc
Confidence            468999999999999999987643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.14  E-value=0.00033  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.13  E-value=0.00024  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.13  E-value=0.00034  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      -.|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.12  E-value=0.00034  Score=50.41  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..-|++.|++||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.12  E-value=0.00028  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.12  E-value=0.00031  Score=48.01  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.11  E-value=0.00033  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.11  E-value=0.00026  Score=50.06  Aligned_cols=23  Identities=43%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.11  E-value=0.00017  Score=50.21  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHH-hC
Q psy11135          5 KLVVVGAGGVGKSALTIQLI-QN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~-~~   26 (191)
                      -|+++|+.||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998 54

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.10  E-value=0.00038  Score=45.74  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.10  E-value=0.00031  Score=48.59  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998744

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.09  E-value=0.00027  Score=50.35  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.09  E-value=0.00034  Score=46.74  Aligned_cols=21  Identities=43%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.09  E-value=0.00049  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +...|++.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.08  E-value=0.0004  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.07  E-value=0.00025  Score=45.91  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998644

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00017  Score=47.91  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|++|||||||++.+.+.-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.07  E-value=0.00035  Score=50.01  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.07  E-value=0.00044  Score=47.17  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|+++|++|+||||+++.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.06  E-value=0.00035  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.05  E-value=0.00048  Score=48.38  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|+++|+.|||||||++.+.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.05  E-value=0.00034  Score=48.35  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.05  E-value=0.00043  Score=47.92  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.05  E-value=0.00037  Score=51.81  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|+.||||||+++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.04  E-value=0.00032  Score=52.35  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -+++++|+.|+|||||++.|.+..
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.03  E-value=0.00043  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+.|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999854

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.02  E-value=0.00037  Score=51.73  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|||||||++.+.+-..
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCchHHHHHHHHhcCCC
Confidence            68999999999999999988653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.01  E-value=0.00045  Score=48.17  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+.|++.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.00  E-value=0.00056  Score=50.03  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+-|+++|++|||||||++.+.+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.00  E-value=0.00064  Score=45.23  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.00  E-value=0.00046  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|++|+|||||++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7999999999999999998643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.99  E-value=0.00055  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.99  E-value=0.00049  Score=48.67  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -|+++|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.98  E-value=0.00045  Score=51.23  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.97  E-value=0.00066  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|.+||||||+.+.|..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.97  E-value=0.00027  Score=51.42  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            57899999999999999997654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.00041  Score=49.01  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|+++|++||||||+.+.|..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.97  E-value=0.00057  Score=45.17  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+.++|++|+|||||+.++...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999998753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.96  E-value=0.00065  Score=46.20  Aligned_cols=22  Identities=36%  Similarity=0.370  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-|+++|+.|+||||+++.+.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.96  E-value=0.00057  Score=45.89  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.96  E-value=0.00045  Score=49.87  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.96  E-value=0.00048  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHCCC
Confidence            6899999999999999998765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.96  E-value=0.00051  Score=49.93  Aligned_cols=83  Identities=12%  Similarity=0.039  Sum_probs=46.0

Q ss_pred             EEEEeCCChhhH-----HH-------HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         53 LDILDTAGQEEY-----SA-------MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        53 ~~~~D~~g~~~~-----~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      ..++|++|....     ..       +........+.++++.|......   +...+..+....    -..++++||.|.
T Consensus       187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~----~~t~iivTh~d~  259 (304)
T 1rj9_A          187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV----GLTGVIVTKLDG  259 (304)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH----CCSEEEEECTTS
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc----CCcEEEEECCcc
Confidence            567899994321     11       11122344677788888766432   223333333211    135788999986


Q ss_pred             CCCccCHHHHHHHHHHcCCCEEEec
Q psy11135        121 STWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ...   ...+..+....+.|+.+++
T Consensus       260 ~a~---gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAK---GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCC---CTTHHHHHHHHCCCEEEEE
T ss_pred             ccc---ccHHHHHHHHHCCCeEEEe
Confidence            532   2234456677888877765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.95  E-value=0.0005  Score=51.15  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999998765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.95  E-value=0.00069  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|++|||||||++.|.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.95  E-value=0.00051  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHHcCCC
Confidence            68999999999999999987653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.95  E-value=0.00051  Score=51.08  Aligned_cols=22  Identities=36%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            6899999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.93  E-value=0.00066  Score=47.27  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.93  E-value=0.00074  Score=47.89  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.93  E-value=0.00053  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|+.||||||+++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.92  E-value=0.00062  Score=48.07  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~   24 (191)
                      ..|+++|+.||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999997

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.92  E-value=0.00063  Score=45.33  Aligned_cols=22  Identities=41%  Similarity=0.619  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.91  E-value=0.00056  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999998765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.91  E-value=0.00055  Score=51.15  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCcHHHHHHHHHHcCCC
Confidence            68999999999999999987653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.90  E-value=0.00068  Score=44.69  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.90  E-value=0.00052  Score=51.15  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.90  E-value=0.0007  Score=45.69  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.90  E-value=0.00074  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ..|+++|+.|||||||++.|.+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.89  E-value=0.00087  Score=44.90  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.89  E-value=0.00068  Score=46.77  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |+++|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.89  E-value=0.00064  Score=49.37  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -++++|+.||||||+++.+.+
T Consensus       102 vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.89  E-value=0.00023  Score=48.76  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999998643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.87  E-value=0.00049  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.87  E-value=0.00064  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|+|+|+.||||||+++.+.+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            37899999999999999998643

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.86  E-value=0.00065  Score=46.70  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+.+.|++.|.+||||||+.+.|..
T Consensus         1 m~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            1 MKAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            6778899999999999999998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.85  E-value=0.00071  Score=48.40  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|++|+|||||++.+.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999998643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.85  E-value=0.00068  Score=49.94  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+++.|++|+|||||++.+.+.-
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            37899999999999999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.84  E-value=0.00093  Score=45.40  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+. .|++.|.+||||||+.+.|..
T Consensus         1 m~~-~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            1 MRG-IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             CCS-EEEEECSTTSSHHHHHHHHHH
T ss_pred             CCe-EEEEECCCCCCHHHHHHHHHH
Confidence            555 689999999999999998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.81  E-value=0.00046  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCccHHHHHHHHHcCC
Confidence            6899999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.81  E-value=0.0009  Score=43.97  Aligned_cols=21  Identities=43%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.79  E-value=0.00075  Score=50.75  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            36899999999999999998743

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.78  E-value=0.00088  Score=46.27  Aligned_cols=21  Identities=24%  Similarity=0.650  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++++|++|+|||||+..+.+.
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            688999999999999998743

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.78  E-value=0.0012  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+ ..|++.|.+||||||+.+.|..
T Consensus         1 M~-~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MK-KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CC-EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHHHH
Confidence            44 4589999999999999999975

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.78  E-value=0.0013  Score=45.81  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ..-|++.|++||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999998754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.77  E-value=0.00074  Score=52.64  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.||||||+++.+.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.77  E-value=0.00054  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-|++.|+.||||||+++.+.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999998765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.77  E-value=0.001  Score=46.88  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+.|++.|.+||||||+.+.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.00095  Score=47.10  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.75  E-value=0.00098  Score=44.39  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      .+++|+.|+|||||+.++..
T Consensus        29 ~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.74  E-value=0.0011  Score=47.69  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~   24 (191)
                      .+.|+|.|.+||||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999986

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.73  E-value=0.00071  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            4789999999999999999653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.70  E-value=0.0011  Score=44.88  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -.+++.|++|+|||+|+..+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.70  E-value=0.001  Score=46.94  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.69  E-value=0.0015  Score=44.71  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-|++.|.+|+||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.69  E-value=0.00046  Score=51.23  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|||||||++.+.+-..
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            68999999999999999987653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.69  E-value=0.00092  Score=44.36  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.69  E-value=0.0011  Score=45.87  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.+++.|++|+|||++++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.68  E-value=0.0011  Score=49.25  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -|+++|+.||||||+++.+.+
T Consensus       159 vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHh
Confidence            588999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.00092  Score=51.42  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            57899999999999999997653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.67  E-value=0.0011  Score=47.88  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|++|+|||||+..+.+..
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999987543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.66  E-value=0.0014  Score=44.26  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -+.|+++|..||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999998654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.64  E-value=0.0012  Score=51.01  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             EEEEEeCCChhhHHH----HHHhh--------cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         52 LLDILDTAGQEEYSA----MRDQY--------MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~----~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .+.++||+|......    .....        ....+-++++.|.+....   .....+.+....   + ...+|+||.|
T Consensus       377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~---~-itgvIlTKLD  449 (503)
T 2yhs_A          377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV---G-LTGITLTKLD  449 (503)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT---C-CSEEEEECGG
T ss_pred             CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc---C-CCEEEEEcCC
Confidence            467899999532111    11111        112556788888765321   122233333321   1 3467899999


Q ss_pred             CCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135        120 LSTWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ...   ....+..+...++.++.++.
T Consensus       450 ~ta---kgG~~lsi~~~~~~PI~fig  472 (503)
T 2yhs_A          450 GTA---KGGVIFSVADQFGIPIRYIG  472 (503)
T ss_dssp             GCS---CCTHHHHHHHHHCCCEEEEE
T ss_pred             Ccc---cccHHHHHHHHHCCCEEEEe
Confidence            632   23345667777888887755

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.61  E-value=0.0019  Score=44.46  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+..-|++.|.+||||||+++.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            5667799999999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.60  E-value=0.0014  Score=44.85  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999987

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.0068  Score=46.22  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.59  E-value=0.0014  Score=49.09  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+++.|++|+|||||++.+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999985

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.58  E-value=0.0015  Score=45.46  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            3689999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.58  E-value=0.0015  Score=48.35  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67899999999999999998765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.58  E-value=0.002  Score=46.83  Aligned_cols=26  Identities=31%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+..-|+++|++|||||+|...+...
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence            56667899999999999999999754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.57  E-value=0.0017  Score=41.67  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.55  E-value=0.0074  Score=44.99  Aligned_cols=19  Identities=42%  Similarity=0.538  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      .+++|+.|+|||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4689999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.55  E-value=0.0017  Score=41.91  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      .+++|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999999975

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.54  E-value=0.0041  Score=47.48  Aligned_cols=20  Identities=35%  Similarity=0.290  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~   24 (191)
                      -|.|+|..++|||+|+|.++
T Consensus        69 vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           69 AVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCchhHHHHHHH
Confidence            46699999999999999664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.51  E-value=0.0016  Score=46.89  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.+++.|++|+|||++++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.51  E-value=0.0021  Score=44.74  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=20.8

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +...|+++|.+|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.50  E-value=0.0013  Score=44.74  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.49  E-value=0.0017  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++++...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.49  E-value=0.0017  Score=50.09  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            368999999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.49  E-value=0.0019  Score=45.57  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||++++.+...
T Consensus        41 ~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.47  E-value=0.0019  Score=43.95  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.47  E-value=0.0019  Score=44.59  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.45  E-value=0.0019  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||++++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            4899999999999999999764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.44  E-value=0.0019  Score=46.66  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-+++.|+||+|||+|++++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35677899999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.42  E-value=0.0028  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.41  E-value=0.0022  Score=43.51  Aligned_cols=25  Identities=32%  Similarity=0.614  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ...|+++|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999997654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.41  E-value=0.0023  Score=46.74  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|++|||||||...|...
T Consensus         7 ~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.40  E-value=0.0022  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            57899999999999999998765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.38  E-value=0.0022  Score=46.90  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||+|++.+.+.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.37  E-value=0.0027  Score=44.10  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++..++|++||||||+...|..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            6889999999999999998854

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.36  E-value=0.0019  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            57899999999999999997754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.35  E-value=0.0027  Score=44.39  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+..-|++.|.+||||||+++.+..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.32  E-value=0.0023  Score=50.80  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.32  E-value=0.0033  Score=43.92  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|++.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.0031  Score=50.17  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999998765

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.31  E-value=0.0025  Score=45.62  Aligned_cols=21  Identities=43%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            368999999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.31  E-value=0.0025  Score=46.14  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             EEEEEEeCCChhhHHH--H--HHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         51 ALLDILDTAGQEEYSA--M--RDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      +.+.++||+|......  +  ....+.  ..+.++++++.+..  ...+..+...+.    .-+ ..-+|.||.|.... 
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~~-  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETTS-  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCSC-
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCcccc-
Confidence            4578999999654321  1  112232  35677888887653  223333322221    111 34567799997642 


Q ss_pred             cCHHHHHHHHHHcCCCEEEec
Q psy11135        125 VDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~s  145 (191)
                        ...+.......+.|+.+++
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2355667778888876654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.011  Score=44.93  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|++.|+||+|||+|++++.+.
T Consensus       218 GvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          218 GVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             EEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCceECCCCchHHHHHHHHHHH
Confidence            5899999999999999999764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.29  E-value=0.0023  Score=48.58  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-|+++|.+||||||+.+++...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.29  E-value=0.0032  Score=43.30  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+..-|++.|.+||||||.++.+..
T Consensus         1 m~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            1 MRSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             -CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5667799999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.28  E-value=0.003  Score=49.59  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0028  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|++.|+||+|||+|++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.25  E-value=0.0031  Score=45.63  Aligned_cols=21  Identities=19%  Similarity=0.531  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+++.|++|+|||++++.+..
T Consensus        69 ~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.25  E-value=0.0026  Score=44.19  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=17.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +..-|++.|.+||||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.25  E-value=0.003  Score=45.88  Aligned_cols=86  Identities=16%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             EEEEEEeCCChhhHHH--------HHHhh----cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         51 ALLDILDTAGQEEYSA--------MRDQY----MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~--------~~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      +.+.++||||......        .....    ....+.++++.|....  .+.+. ....+...    -...-+|+||.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~----~~i~gvVlTk~  259 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA----VNVTGIILTKL  259 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH----SCCCEEEEECG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc----CCCCEEEEeCC
Confidence            3478899999532111        11111    1247788888888632  12222 22333321    12345778999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCCEEEecc
Q psy11135        119 DLSTWAVDMNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus       119 D~~~~~~~~~~~~~~~~~~~~~~~~~s~  146 (191)
                      |...   ....+..+....+.|+.+++.
T Consensus       260 D~~~---~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          260 DGTA---KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GGCS---CTTHHHHHHHHHCCCEEEEEC
T ss_pred             CCcc---chHHHHHHHHHHCCCEEEEeC
Confidence            9653   223467788888988887764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.24  E-value=0.0041  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.697  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-|+++|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3589999999999999998864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.24  E-value=0.0042  Score=44.17  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .-.+++.|++|+|||++++++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.003  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.|++.|+||+|||+|++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.23  E-value=0.0028  Score=47.08  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||||++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.22  E-value=0.0031  Score=45.50  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.21  E-value=0.0024  Score=47.11  Aligned_cols=21  Identities=29%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998763

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.0052  Score=42.46  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.7

Q ss_pred             EEEEE--cCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVV--GAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~--G~~~~GKStli~~l~~~~   27 (191)
                      ||+|+  |.++.||++|++++++..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            56666  999999999999998774

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.20  E-value=0.0031  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||+|++++...
T Consensus        47 ~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            5899999999999999999764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.18  E-value=0.0032  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++.|++|+||||+++.+.+.-
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999987653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.18  E-value=0.0022  Score=51.00  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            57899999999999999997654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.17  E-value=0.0034  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            6899999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.17  E-value=0.0034  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.17  E-value=0.0022  Score=45.51  Aligned_cols=24  Identities=29%  Similarity=0.214  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ...|++.|..||||||+++.|...
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999888654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.16  E-value=0.0041  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999998765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.15  E-value=0.0029  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.14  E-value=0.0035  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+++.|++|+||||+++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999987643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.13  E-value=0.0033  Score=50.06  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.13  E-value=0.0015  Score=41.77  Aligned_cols=22  Identities=9%  Similarity=0.144  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..|++.|++|+|||++++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            3589999999999999988854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.12  E-value=0.0046  Score=45.74  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+|+++|++|+||||+.+.+.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999987753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.12  E-value=0.0036  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.|++.|++|+|||++++++...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0037  Score=47.05  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|++.|+||+|||.|++++.+.
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEeCCCCCCHHHHHHHHHHh
Confidence            5899999999999999999764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.11  E-value=0.0044  Score=41.00  Aligned_cols=24  Identities=29%  Similarity=0.610  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|++.|++|+||||+.-.+....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998743

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.09  E-value=0.0038  Score=43.49  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      +++.|++|+|||||+..+..
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999777653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.07  E-value=0.0045  Score=45.01  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      -.+++.|++|+|||+|+.++..
T Consensus       153 ~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.05  E-value=0.0019  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999887654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.03  E-value=0.0046  Score=45.45  Aligned_cols=22  Identities=50%  Similarity=0.745  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.03  E-value=0.0043  Score=45.68  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.02  E-value=0.0041  Score=46.08  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -+.++|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999998654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.02  E-value=0.0047  Score=42.04  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      .+++|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            3688999999999999874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.02  E-value=0.0018  Score=45.89  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0041  Score=49.53  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999988653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.00  E-value=0.0025  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            57899999999999999987654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.99  E-value=0.0043  Score=46.07  Aligned_cols=22  Identities=27%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.96  E-value=0.004  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.94  E-value=0.0049  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||+|++++...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.94  E-value=0.0024  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+-|++.|+.||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.91  E-value=0.0036  Score=49.25  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..|+++|..|||||||++.|.+.-
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh
Confidence            568999999999999999987654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.91  E-value=0.0049  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|+++|++|+|||+|++.+.+..
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999998643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.91  E-value=0.0052  Score=45.06  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||++++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.90  E-value=0.0049  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -++++|++|+|||||++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.90  E-value=0.0059  Score=43.18  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..|++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            358999999999999999997654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.90  E-value=0.005  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -+++.|++|+|||+|++.+.+.
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.89  E-value=0.0081  Score=41.54  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ..-|++.|.+|+||||+++.+..
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-46
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-44
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-43
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-42
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-41
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-41
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-40
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-39
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-39
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-39
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-39
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-39
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-38
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-38
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-37
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-37
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-36
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-35
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-35
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-35
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-35
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-35
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-34
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-34
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-33
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-33
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-32
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-30
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-30
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-30
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-30
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-29
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-29
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-28
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-26
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-25
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-24
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-23
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-23
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	5e-22
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-22
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-22
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-21
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-15
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-10
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-10
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-10
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-08
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	4e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	2e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.001
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	0.003

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 3e-46
 Identities = 136/165 (82%), Positives = 150/165 (90%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI  YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +   V+  QAQ+LA  + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  143 bits (362), Expect = 1e-44
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGK+ +  +  ++ F   +  TI   ++ + + +DG+   L I DTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G +LV+ + + KSF++I ++   I+    A+   M+L         
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V   + ++LA  + I F++TSAK  + V++AF+TL R+IK 
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  139 bits (352), Expect = 4e-43
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
            K++++G  GVGKS L ++ +++ F   +  TI   ++ K V I+G+   L I DTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            +  +   Y R   G +LV+ +   ++F +I  +  +       +E  ++LVGNK D+ T
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSDMET 121

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V  +Q + LA++  IPFI++SAK    V++ F+TL + I++
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 80/165 (48%), Positives = 126/165 (76%), Gaps = 1/165 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYK+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   ++L+ILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
            E++++MRD Y++ G+GF+LV+++ + +SF+DI   R+QI RVK  E+VP++LVGNK DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 121 STWAVDM-NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
            +      ++ + LAE++  PF++TSAK++  VD+ F  +VR++ 
Sbjct: 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 2e-41
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
           +K+V++G  GVGK+ L  +  Q  F      TI  D   K V I+GE   L I DTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN-KCDLS 121
            + ++   Y R+    +L + +   +SF  +  +  +I++     +V  VLVGN      
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAE 124

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V   +A+E +E  ++ +++TSAK    V+  F  L   +
Sbjct: 125 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 3e-41
 Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 1/170 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           +   K++++G  GVGKS+L ++   + F  E   TI  D   K + +DG  A L I DTA
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE +  +   Y R  +G +LV+ V    +F  + ++  +++      ++  +LVGNK D
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
                VD N+  + A + ++ FI+ SAKT  GV  AF  LV +I +   L
Sbjct: 125 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  132 bits (332), Expect = 4e-40
 Identities = 89/166 (53%), Positives = 126/166 (75%), Gaps = 1/166 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +A +K+++VG+GGVGKSALT+Q + + FV++Y+PT  DSYRK+VV+DGE   +DILDTAG
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y+A+RD Y R+GEGFL VF++  M+SF     +REQI RVK+ E VP +LVGNK DL
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V + +A+  A+Q+N+ +++TSAKTR  VD  F+ L+REI+ 
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 1e-39
 Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQ-VVIDGETALLDILDTAGQ 61
           +K+++VG  GVGK+ L ++     F+   +  T+   +R + + +DG    L + DTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           E + ++   Y R     LL++ V +  SF++I ++  +I      +   M+L        
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              V     ++LA+++ +PF++TSAKT + VD AF  + +E+K+
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 1e-39
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++ + G+   L I DTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + A+   Y R   G L+V+ +    ++  + S+    + + +     ++L+GNK DL  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEA 123

Query: 123 WAVDM-NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
                  +A++ AE+  + F++ SAKT   V+DAF    ++I
Sbjct: 124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 3e-39
 Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +DG+T    I DTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   G LLV+ +    ++E++  + ++++   D   + ++LVGNK DL  
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             AV  ++A+  AE+ N+ FI+TSA     V++AF  ++ EI +
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 7e-39
 Identities = 93/167 (55%), Positives = 127/167 (76%), Gaps = 2/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M EYKLVV+G+GGVGKSALT+Q +Q  FV++YDPTIEDSYRKQV +D +  +L+ILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD- 119
            E+++AMRD YM+ G+GF LV+++ +  +F D+   REQI RVKD E+VPM+LVGNKCD 
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120

Query: 120 LSTWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                V   Q Q LA Q+ N  F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 9e-39
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-----------DGETAL 52
            KL+ +G  GVGK+    +   N F  ++  T+   +R++ V+                 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
           L + DTAGQE + ++   + R   GFLL+F + S +SF ++ ++  Q++     E   +V
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 113 LVGNKCDLSTWAVDM-NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           L+GNK DL         QA+ELA+++ IP+ +TSA T   V+ A  TL+  I K
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 2e-38
 Identities = 92/166 (55%), Positives = 118/166 (71%), Gaps = 1/166 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
            +KLVVVG GGVGKSALTIQ IQ++FV +YDPTIEDSY K   +DG  A LDILDTAGQE
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E+ AMR+QYMR G GFLLVFA+N  +SF ++G    QI RVKD ++ P+VLVGNK DL +
Sbjct: 66  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 125

Query: 123 WAV-DMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
                 ++A       ++ + + SAK R+ VD+AF  LVR ++K +
Sbjct: 126 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (319), Expect = 6e-38
 Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 6/187 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +KL+++G  GVGKS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LS 121
            +  +   Y R   G ++V+ V   +SF  +  + ++I R      V  +LVGNKCD   
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKD 125

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK---DKMLRGKEKKKRG 178
              V+ + A+E A+   +PF++TSA     V+DAF T+ R+IK+    + L    +KK  
Sbjct: 126 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKED 185

Query: 179 ISGNKLK 185
                LK
Sbjct: 186 KGNVNLK 192

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-37
 Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQE 62
           +KLV +G   VGK++L  + + + F + Y  TI   +  + +  +  T  L + DTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
            + ++   Y+R     ++V+ + ++ SF+    + + ++  +   +V ++LVGNK DL+ 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLAD 119

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
              V + + +  A++ N+ FI+TSAK    V   F  +   +
Sbjct: 120 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 3e-37
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K +++G  GVGKS L +Q     F   +D TI   +  ++V IDG+   L I DTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ +   ++F  + S+ E  ++   +  + ++L+GNK DL +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ-HSSSNMVIMLIGNKSDLES 122

Query: 123 WAVDMNQ-AQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                 +  +  A +  + F++TSAKT   V++AF    +EI +
Sbjct: 123 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 7e-36
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
           +K++++G GGVGKS+L  + + N F  +   TI   +  + + +DG    + I DTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
            + ++R  + R  +  LL F+V+  +SF+++ +++++     D +E    P V++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 120 LSTWAVDMNQAQELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           +S   V   +AQ    +  + P+ +TSAK    V  AF   VR +
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K++++G   VGK++   +   + F   +  T+   ++ K +  + +   L I DTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            Y  +   Y R   GF+L++ + + +SF  +  +  QIK         +++         
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V   + ++LA+     F + SAK  + V   F  LV  I +
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 95/167 (56%), Positives = 121/167 (72%), Gaps = 2/167 (1%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           +  YKLVVVG GGVGKSALTIQ  Q  FV +YDPTIEDSY K   ID + A+LD+LDTAG
Sbjct: 2   LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 61

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QEE+SAMR+QYMRTG+GFL+V++V    SFE +  + + I RVKD E  PM+LV NK DL
Sbjct: 62  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 121

Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKTR-MGVDDAFYTLVREIKK 165
                V  +Q +E+A ++NIP+I+TSAK   + VD  F+ LVR I++
Sbjct: 122 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 102/166 (61%), Positives = 125/166 (75%), Gaps = 1/166 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y+LVVVG GGVGKSALTIQ IQ++FV +YDPTIEDSY KQ VID   A LDILDTAGQE
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 64

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           E+ AMR+QYMRTGEGFLLVF+V    SFE+I  ++ QI RVKD +E PM+L+GNK DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
              V   + Q+LA Q  + +++ SAK RM VD AF+ LVR I+K +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 3e-35
 Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQE 62
           +K +V+G  G GKS L  Q I+  F D+ + TI   +  + + + G+   L I DTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + ++   Y R   G LLV+ + S +++  + ++    + +   + + ++L GNK DL  
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDA 124

Query: 123 WAVDM-NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                  +A   A++  + F++TSA T   V++AF    R+I  
Sbjct: 125 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 4e-35
 Identities = 63/205 (30%), Positives = 90/205 (43%), Gaps = 28/205 (13%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           M   K VVVG G VGK+ L I    N F  EY PT+ D+Y   V+I GE   L + DTAG
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           QE+Y  +R       + FL+ F+V S  SFE++              + P +LVG + DL
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDL 119

Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKD 166
                            +    A++LA     + +++ SA T+ G+ + F   +      
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA--- 176

Query: 167 KMLRGKEKKKRGISGNKLKQCCVLL 191
             L   E KK         + CVLL
Sbjct: 177 --LEPPEPKK--------SRRCVLL 191

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 1e-34
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
           +K+V++G G VGK++L ++  +N F D++  T+  S+  K++ I G+   L I DTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + A+   Y R   G +LV+ +    SF+ + ++ ++++++   E    ++         
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             V + +A+  AE        TSAK   G+++ F  L + + +
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 6e-34
 Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +Y++ V GAGGVGKS+L ++ ++  F + Y PT+ED+YR+ +  D     L I DT G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
           ++ AM+   +  G  F+LV+++ S +S E++    EQI  +K D E +P++LVGNKCD S
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 122 -TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
            +  V  ++A+ LA  +   F++TSAK    V + F  L+   K+  +
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 169

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 6e-33
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
             K VVVG G VGK+ L I    N F  EY PT+ D+Y   V++DG+   L + DTAGQE
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-- 120
           +Y  +R       +  L+ F++ S  SFE++ +              P++LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCPNTPIILVGTKLDLRD 123

Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
                          +   Q   +A++   + +++ SA T+ G+   F   +R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 7e-33
 Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
           + ++KLV++G   VGKS+L ++ ++  F +  + TI  ++  Q V +D  T   +I DTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           GQE Y ++   Y R  +  ++V+ + + +SF    ++ ++++R      V  +       
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
            +  AVD  +AQ  A+  ++ F++TSAKT M V++ F  + +++ K+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 4e-32
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 1/165 (0%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
           + E K+ ++G  GVGKS++  + +++ F    +PTI      K V    E     I DTA
Sbjct: 2   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61

Query: 60  GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
           G E + A+   Y R     ++V+ +   ++F  + ++  ++++      V  +       
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121

Query: 120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
                V    A++ A+  +  F++TSAK  + +++ F  + R I 
Sbjct: 122 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 7e-32
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
            K VVVG G VGK+ L +    + F +EY PT+ D Y   V + G+  LL + DTAGQE+
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL--- 120
           Y  +R       + FL+ F+V +  SF+++        + + A  VP +L+G + DL   
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 128

Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
                         + + Q Q+LA++     +++ SA T+ G+   F   +  I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV--IDGETALLDILDTAGQ 61
            K++++G  GVGK++L  + + + +  +Y  TI   +  + V     + A + + DTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMVLVGNKC 118
           E + ++   + R  +  +LV+ V +  SFE+I S+R++      V   E  P V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 119 DLSTWAVDMNQAQEL---AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           D       +++           +IP   TSAK  + VD AF  + R   +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 2e-30
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQE 62
           +K++V+G   VGK+ LT +     F D  + TI   +R+  V IDGE   + + DTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 63  EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
            +  +M   Y R     + V+ + +M SF  + ++ E+ K+   A ++P +LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 122 TWAVDM-NQAQELAEQFNIPFIKTSAKTRM---GVDDAFYTL 159
           +      + AQ+ A+  ++P  +TSAK       V+  F TL
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-30
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 2   AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           AE KL + G  GVGKSAL ++ +   F+ EYDPT+E +YR Q  ID E   ++I      
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI-LDTAG 59

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
           +E +  R+ +MR GEGF+LV+ +    SFE++   +  +  +K  + V ++LVGNK DL 
Sbjct: 60  QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119

Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMG-VDDAFYTLVREIKKDKM 168
               V   + ++LA +    F + SA T  G + + FY L RE+++ +M
Sbjct: 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 168

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 7e-30
 Identities = 61/164 (37%), Positives = 99/164 (60%), Gaps = 1/164 (0%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
             K+ ++G   VGKS+LTIQ ++  FVD YDPTIE+++ K + ++G+   L ++DTAGQ+
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
           EYS     Y     G++LV++V S+KSFE I     ++  +    ++P++LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              +   + + LAE +N  F+++SAK      D F  ++ E +K
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (261), Expect = 1e-29
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 6/166 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETALLDILDTAGQEE 63
           KLV++G   VGKS++ ++ + N F +  +PTI  ++  Q V     T   +I DTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           ++++   Y R  +  L+V+ V   +SF     + +++      +++ + LVGNK D+   
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQE 123

Query: 124 AVDMNQAQE----LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
             +   A+E    LAE+  + F +TSAKT   V+D F  +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (258), Expect = 6e-29
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQE 62
            K++++G  GVGK++L  Q +   F ++Y  TI      K+V++D     + I DTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCD 119
            + ++   + R  +  +LVF V +  +F+ + S+R++        D E  P V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 120 LSTWAVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
           L    V   +AQ     + NIP+ +TSAK  + V+ AF T+ R   K +   
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 15/174 (8%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
            KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +DG+   L + DTAG E+
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD---- 119
           Y  +R       +  L+ F+++S  S E+I        +      VP++LVGNK D    
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 121

Query: 120 ---------LSTWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
                    +    V   + +++A +     +++ SAKT+ GV + F    R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.5 bits (241), Expect = 1e-26
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEE 63
           K+VVVG G VGKS++  +  +  F  +Y  TI  D   +Q+ ++ E   L + DTAGQEE
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
           + A+   Y R  +  +LVF+    +SFE I S+RE++          +V       L   
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV-QNKIDLLDDS 122

Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
            +   +A+ LA++  + F +TS K  + V + F  L  + 
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 2e-26
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQE 62
           +KLV+VG GG GK+    + +   F  +Y  T+           +      ++ DTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           ++  +RD Y    +  +++F V S  +++++ ++   + RV   E +P+VL GNK D+  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 121

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
             V          + N+ +   SAK+    +  F  L R++  D  L
Sbjct: 122 RKVKAKSIVF-HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.0 bits (240), Expect = 2e-26
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+VVVG    GK+AL     ++ F + Y PT+ ++Y     ID +   L + DT+G   Y
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-- 122
             +R       +  L+ F ++  ++ + +    +   + +      M+LVG K DL T  
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLRTDV 122

Query: 123 -----------WAVDMNQAQELAEQFNI-PFIKTSAKTRM-GVDDAFYTLVREIKK 165
                        V  +Q   +A+Q     +I+ SA      V D F+        
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 3e-25
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 8/166 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G    GK+ +  +L     V     TI         +  +    ++ D  GQ+
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVT----TIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-- 120
           +   +   Y    +G + V         ++      +I   ++  +  +++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 121 --STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
                 +            N     + A +  G+ +    L    K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 1e-24
 Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 4/168 (2%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           Y++V++G  GVGKS L       H     + +   ED+Y + +++DGE+A + +LD    
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 62  EEYSAMRDQYMRTGE-GFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
           +  +     +       +L+V+++    SFE     R Q++R +  E++P++LVGNK DL
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 121 STWAV-DMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
                  +++ +  A  F+  FI+TSA  +  V + F  +VR+++  +
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 5e-24
 Identities = 33/173 (19%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 1   MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
           + E +L V+G    GKS+L  + +   +    + T  + Y+K++++DG+T L+ I + AG
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 61

Query: 61  QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE--VPMVLVGNKC 118
             +               + VF++    SF+ +     Q+  ++      + + LVG + 
Sbjct: 62  APDAKFSGWADA-----VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 119 DLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
            +S  +  +          A+     + +T A   + VD  F  + +++   +
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 1e-23
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 8/163 (4%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           ++++VG    GK+ +  +L     V     TI         ++ +     + D  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL---- 120
             +   Y +  +G + V   N  +   +      ++    +  +  +++  NK DL    
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
           +   +            N     T A +  G+ +    L  ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 3e-23
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
           YK++++GA GVGKSAL                   +Y + +V+DGE A L + D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123
              +    M  G+ +++V++V    SFE     R Q++R +  ++VP++LVGNK DL   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120

Query: 124 AVDM-NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
                ++ +  A  F+  FI+TSA     V   F  +VR+I+  +
Sbjct: 121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 89.3 bits (220), Expect = 3e-23
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G  G GK+ +  +L     V        +       +  +   L++ D  GQ 
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQT 72

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
                   Y       + V                  + + ++ ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 123 WAVDMNQAQELAEQF----NIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
                  ++EL        +   + +SA    G+ +    L+  IK++++
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 182

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 85.5 bits (210), Expect = 5e-22
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +L +VG    GK+     +    F ++  PT+         I      + + D  GQ 
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV---GFNMRKITKGNVTIKLWDIGGQP 58

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
            + +M ++Y R     + +      +  E   +    +      + +P++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 123 WAVDMNQAQELAEQF----NIPFIKTSAKTRMGVDDAFYTLVREIK 164
              +    +++         I     S K +  +D     L++  K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 85.8 bits (211), Expect = 6e-22
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 8/165 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G    GK+ L  QL              +    Q     +   L++ D  GQ 
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           +       Y    +  + V      K FE+ G    ++   +    VP+++  NK DL T
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 123 WAVDMNQAQELAEQF----NIPFIKTSAKTRMGVDDAFYTLVREI 163
            A     A+ L               SA T  GV D    + + +
Sbjct: 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 7e-22
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 8/166 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E+K+++VG    GK+ +  Q   N  V                I        + D  GQE
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI----GSNVEEIVINNTRFLMWDIGGQE 70

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-- 120
              +  + Y    E  ++V      +          ++   +D  +  +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 121 --STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
             +   +         +          A T  G+      ++  +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +L+++G    GK+ +  +       D   PT+  + +       +    +I D  GQ+
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKL---NIWDVGGQK 57

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
              +    Y  + +G + V      +  +D     + +   +      +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 123 WAVDMNQAQELAEQF----NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                   + L        +      SA T   +      L+ +I  
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 8/169 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E +++++G  G GK+ +  +L     V     TI         +  +     + D  G  
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
                   Y    +  + V             S    +   ++  +  +V+  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 123 WAVDMNQAQELAEQF----NIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
                  A  L             KTSA    G+D+A   LV  +K  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           KL+ +G    GK+ L   L  +       PT    +     +          D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTW---HPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124
             +   Y     G + +      + F++     + +  + + ++VP V++GNK D     
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 125 VDMNQAQEL-----------AEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
            +      L             Q  +     S   R G  +AF  L +
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 68.2 bits (165), Expect = 3e-15
 Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 20/177 (11%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
             KLV +G    GK+ L   L  +            S      +          D  G  
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHI 68

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
           +   +   Y+    G + +      +   +     + +   +    VP++++GNK D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 123 WAVDMNQAQELAEQF----------------NIPFIKTSAKTRMGVDDAFYTLVREI 163
              +    +                       +     S   R G  + F  + + I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.6 bits (130), Expect = 4e-10
 Identities = 30/198 (15%), Positives = 50/198 (25%), Gaps = 46/198 (23%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E KL+++GAG  GKS +  Q+   H                     +     + D  GQ 
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQR 53

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKS----------FEDIGSYREQIKRVKDAEEVPMV 112
                           +   A++                +     + I   K   +  ++
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 113 LVGNKC----------DLSTWAVDMNQ-------AQELAEQF----------NIPFIKTS 145
           L  NK            L+    +          A  +  QF           I    T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 146 AKTRMGVDDAFYTLVREI 163
           A     V   F   V ++
Sbjct: 174 ATDTKNVQFVF-DAVTDV 190

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 19/176 (10%)

Query: 2   AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
           A ++L+++GAG  GKS +  Q+   H V     T       +     +     + D  GQ
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQMRILHVV----LTS---GIFETKFQVDKVNFHMFDVGGQ 57

Query: 62  EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYR----------EQIKRVKDAEEVPM 111
            +      Q        + V A +S        +            + I   +    + +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 112 VLVGNKCDLSTWAVDMN--QAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           +L  NK DL    V     + ++   +F        A    G D         I+ 
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 8e-10
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
            ++ VG    GK+ L ++L+   + D    +I DS     V +     L ++D  G E  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 65  SAMRDQ--YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA--EEVPMVLVGNKCDL 120
                            +V +    +  +D+  +  Q+     A      +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153
           +  A      Q+  E+       T +     +D
Sbjct: 121 AM-AKSAKLIQQQLEKELNTLRVTRSAAPSTLD 152

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 22/177 (12%), Positives = 59/177 (33%), Gaps = 8/177 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
             K++++GAG  GKS    Q+     +   DPT       +   + +     ++D  GQ 
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI---HEYDFEIKNVPFKMVDVGGQR 55

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
                  +   +    L + + +             ++           ++        +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL--NIFETIVNNRVFSNVS 113

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             + +N+   L E+  +  IK       G       + + + +    + +++++R +
Sbjct: 114 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL 170

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 8/177 (4%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           E KL+++G G  GKS    Q+   H      PT           D ++ +  ++D  GQ 
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQR 56

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
                           + + A++             +++  K       ++       S+
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK--ALFRTIITYPWFQNSS 114

Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
             + +N+   L E+     +        G         RE      +       + I
Sbjct: 115 VILFLNKKDLLEEKIMYSHLVDYFPEYDG-PQRDAQAAREFILKMFVDLNPDSDKII 170

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 4/161 (2%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
           K+V+ G    GKS+L   L         D         +  I  +   L I+DTAG  E 
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62

Query: 65  SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124
           S   ++         +  A   +   +   +       +       +        +   A
Sbjct: 63  SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122

Query: 125 VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
               +   ++E      I+ SA+T  GVD     L   +K+
Sbjct: 123 DITGETLGMSEVNGHALIRLSARTGEGVDV----LRNHLKQ 159

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 24/201 (11%), Positives = 60/201 (29%), Gaps = 26/201 (12%)

Query: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           +  +++ G    GK++L   L  +            S       D + + + ++D  G  
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHV 57

Query: 63  EYSAMRDQYMRTG-----EGFLLVFAVNSMKSFEDIGSYREQIKRV---KDAEEVPMVLV 114
           +       Y++T          +V +    K       +   I  +        + +++ 
Sbjct: 58  KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117

Query: 115 GNKCDLSTWAVDMNQAQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIK 164
            NK +L T A   ++ ++  E            ++  ++         ++    L  +  
Sbjct: 118 CNKSELFT-ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL--QST 174

Query: 165 KDKMLRGKEKKKRGISGNKLK 185
                   E       G+  K
Sbjct: 175 DGFKFANLEASVVAFEGSINK 195

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 14/165 (8%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALL-----DILD 57
           ++V+VG   VGKS L  +L+      V +   T  D   +++VI G    +        +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 58  TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117
           T    E   +        +  +++F +++           E  K ++  +    ++V NK
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASS-----PLDEEDRKILERIKNKRYLVVINK 116

Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162
            D+     +     +L    +   +K SA    G++    ++ RE
Sbjct: 117 VDVVEKINEEEIKNKLG--TDRHMVKISALKGEGLEKLEESIYRE 159

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 21/176 (11%)

Query: 5   KLVVVGAGGVGKSALTIQLIQ--NHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
           K+ +VG   VGKS L   ++      V     T  D    +V IDG       +DTAG  
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLR 67

Query: 63  EYSAMRDQYMRTGEGFLLVFAVNS-----MKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117
             S +  + +     + +V ++       +      G  R+  +     E      V   
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 118 CDLSTWAVDMNQAQELAEQF--------NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
                      +  E  + F          P I TSA     +D     ++  +  
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR----MIDAMNL 179

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 10/171 (5%)

Query: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG------ETALLDILDT 58
           ++ + G   VGKS+    LI    +         +      I        +         
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 59  AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
           +  E  +  R           L   V  +       +   Q+        +P++++  K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 119 DLSTWAVDMNQAQELAEQFNI----PFIKTSAKTRMGVDDAFYTLVREIKK 165
           D          A+ + +  NI      I  S++T+ G D+A+  + + I +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 32  YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFE 91
           Y                    +  +D  G E   A         +G +LV A N      
Sbjct: 67  YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 126

Query: 92  DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF------NIPFIKTS 145
                RE    +       +++V NK D+ +    ++Q +++ +        N+P I  S
Sbjct: 127 Q---TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 183

Query: 146 AKTRMGVDDAFYTLVREIK 164
           A  ++ +D     +   IK
Sbjct: 184 ALHKINIDSLIEGIEEYIK 202

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 24/179 (13%), Positives = 46/179 (25%), Gaps = 21/179 (11%)

Query: 7   VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA 66
           +  G   VGKS L  +L          P +     +    + +   +             
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 67  MRDQYMRTGEGFL----------LVFAVNSMKSFEDIGSYREQIKRVKD------AEEVP 110
                                  LV    +          R +I    +        ++P
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 111 MVLVGNKCD-LSTWAVDMNQAQE----LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
            ++  NK D +      +N   E       + +  FI  SAK    ++     +   I+
Sbjct: 124 TIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 11/162 (6%)

Query: 4   YKLVVVGAGGVGKSALTIQLI-QNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
            ++   G    GKS+    L  Q                    +     L+D+      E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 63  EYSAMRDQYMRTGEGF--------LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
               M+ ++ R    +         LV  ++     +D+     +     +   + ++  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 115 GNKCDLSTWAVDMNQAQELAEQF--NIPFIKTSAKTRMGVDD 154
            +K         +N  +E    F  ++     S+  + GVD 
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 19/154 (12%), Positives = 40/154 (25%), Gaps = 11/154 (7%)

Query: 2   AEYKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPTIEDSYRKQVVIDGETALLDI 55
           +   + V G  G GKS+    L      +E            + +  +         +  
Sbjct: 55  SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPN---VVF 111

Query: 56  LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
            D  G    +   D Y+   +     +    + S          I +     +     V 
Sbjct: 112 WDLPGIGSTNFPPDTYLE--KMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 169

Query: 116 NKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR 149
            K D         + Q   ++  +  I+ +    
Sbjct: 170 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 203

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 14/169 (8%)

Query: 8   VVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS 65
           +VG   VGKS L   +        D +  T+  +       DG +    + D  G  E +
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS--FVMADLPGLIEGA 63

Query: 66  ----AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
                +  Q++R  E   ++  V  M   E    Y + +   ++  E  + L      + 
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123

Query: 122 TWAVDMNQAQELAEQF------NIPFIKTSAKTRMGVDDAFYTLVREIK 164
              +DM +A E  E F      + P    SA TR G+ +  + +  +++
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 12/167 (7%)

Query: 8   VVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ---- 61
           +VG    GKS+L   + + H         T+  +     V + E     + D  G     
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEER--FTLADIPGIIEGA 63

Query: 62  -EEYSAMRD--QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
            E      +  +++      L V               +E           P ++  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 119 DLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
           DL      +    +   +  +  +  SA T  G+      L   ++ 
Sbjct: 124 DL-LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 169

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 9/164 (5%)

Query: 7   VVVGAGGVGKSALTIQLI-QNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG--QEE 63
            +VG   VGKS L  +L+ Q   +              +  +G    + +       +E+
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68

Query: 64  YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL--S 121
            +  R            V  V  +          E +       + P++L  NK D    
Sbjct: 69  RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128

Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
              +  +     ++   +  +  SA+T + VD     +   ++K
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDT----IAAIVRK 168

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 28/177 (15%), Positives = 46/177 (25%), Gaps = 36/177 (20%)

Query: 6   LVVVGAGGVGKSALTIQLIQ-------NHFVDEYDPTIEDSYRKQ--------VVIDGET 50
           +  +G    GK+ LT  + +         F    +       R +        V      
Sbjct: 6   VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65

Query: 51  ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRV----KDA 106
                 D  G  +Y           +G +LV A N             Q +      +  
Sbjct: 66  RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAN--------DGPMPQTREHLLLARQI 117

Query: 107 EEVPMVLVGNKCDLSTWAVDMNQ-AQELAEQF--------NIPFIKTSAKTRMGVDD 154
               +V+  NK D    +  +     E+ E            P I  SA   +   D
Sbjct: 118 GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRD 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.64
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.48
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.47
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.31
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.24
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.03
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.45
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.45
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.44
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.39
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.35
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.32
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.31
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1okkd2	207	GTPase domain of the signal recognition particle r	98.16
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.12
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.12
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.01
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.93
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.92
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.91
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.79
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.77
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.77
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.75
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.72
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.67
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.64
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.63
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.59
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.53
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.51
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.46
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.44
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.44
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.43
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.42
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.42
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.35
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.34
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.33
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.33
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.31
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.31
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.3
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.28
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.28
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.28
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.27
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.27
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.27
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.26
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.24
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.23
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.21
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.19
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.18
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.16
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.15
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.15
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.15
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.13
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.12
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.09
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.04
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.01
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.0
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.0
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.99
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.97
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.94
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.92
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.91
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.84
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.8
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.79
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.76
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.75
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.68
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.68
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.63
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.62
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.62
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.59
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.59
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.48
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.45
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.44
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.31
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.3
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.27
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.22
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.2
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.17
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.08
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.08
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.02
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.01
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.0
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.97
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.94
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.89
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.87
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.86
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.86
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.86
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.82
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.74
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.73
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.71
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.69
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.68
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.62
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.49
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.44
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.43
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.39
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.31
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.18
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.13
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.07
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.01
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.99
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.7
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.25
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.24
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.18
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.1
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.1
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.06
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.95
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.65
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.0
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.81
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.78
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.47
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.83
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.68
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.17
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.11
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.92
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	89.42
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.32
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.5
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.77
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.48
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.34
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.35
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.62
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.88
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.72
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.37
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.37
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.34

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-39  Score=215.14  Aligned_cols=165  Identities=82%  Similarity=1.234  Sum_probs=155.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |++|||+++|++|||||||++++.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            89999999999999999999999999988888888887777778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      +||++++++++.+..|+..+......++.|+++|+||+|+..+.+..++++++++.++++|+++||++|.|++++|.+|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999999887777789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-39  Score=214.21  Aligned_cols=165  Identities=58%  Similarity=0.904  Sum_probs=152.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|||||||++++.+..+...+.++..+.+......++..+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            68999999999999999999999999988888888887777777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~  158 (191)
                      |||+++++++..+..|+..+.+.....+.|+++|+||+|+.. +.++.+++.++++.++++|+++||+++. ||+++|..
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999988766667899999999999987 5689999999999999999999999876 99999999


Q ss_pred             HHHHHHh
Q psy11135        159 LVREIKK  165 (191)
Q Consensus       159 i~~~~~~  165 (191)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=215.50  Aligned_cols=164  Identities=49%  Similarity=0.893  Sum_probs=152.7

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|||||||++++.++.+...+.++.++.......+++..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            89999999999999999999999999998888888888878888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +||+++++++..+..|+..+......++.|+++|+||+|+.. ..+..++++.+++.++++++++||++|.|++++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999999887766667899999999999876 5678889999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        160 VREIK  164 (191)
Q Consensus       160 ~~~~~  164 (191)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=219.19  Aligned_cols=165  Identities=33%  Similarity=0.512  Sum_probs=147.5

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|||||||++++..+.+...+.++...........++..+.+.+||++|++++...+..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            89999999999999999999999999998888899888877778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEecc
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSA  146 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~  146 (191)
                      |||+++++||+.+..|+...... ..++.|+++|+||+|+..             ..++.++++.++++++ ++|+++||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            99999999999998766665543 245799999999999843             3578899999999875 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy11135        147 KTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ++|.||+++|+.+++.+.+.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999998877543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1e-38  Score=213.49  Aligned_cols=165  Identities=54%  Similarity=0.932  Sum_probs=150.3

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+-+||+|+|++|||||||++++..+.+...+.+|.+..+.....+++..+.+.+||++|++++..++..++++++++++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            57899999999999999999999999998888888887777778899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+.+....++.|+++|+||+|+.. +.++.++++.+++.++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999998877778899999999999876 5688999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=213.18  Aligned_cols=163  Identities=32%  Similarity=0.506  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      |||+++|++|||||||++++.+..+.. ..++....+.....+++..+.+.+||++|++++..++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999877533 3455556666677889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE  162 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~  162 (191)
                      ++++++++.+..|+..+.........|+++|+||+|+.. ..++.++++++++.++++|+++||++|.|++++|..|++.
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~  160 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ  160 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            999999999999999988766667889999999999976 5678999999999999999999999999999999999998


Q ss_pred             HHhhh
Q psy11135        163 IKKDK  167 (191)
Q Consensus       163 ~~~~~  167 (191)
                      +...+
T Consensus       161 i~~~~  165 (168)
T d2gjsa1         161 IRLRR  165 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            86643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-39  Score=214.56  Aligned_cols=166  Identities=56%  Similarity=0.875  Sum_probs=152.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++..+.+...+.++..+.......+++..+.+.+||++|++++...+..+++.++++++|
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v   84 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   84 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeee
Confidence            47999999999999999999999999988888888877777888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. +.+..++++.+++..+++|+++||++|.|++++|+.|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  164 (173)
T d2fn4a1          85 FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV  164 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999987766667899999999999876 56788899999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+.+
T Consensus       165 ~~i~k~~  171 (173)
T d2fn4a1         165 RAVRKYQ  171 (173)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9986643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=212.34  Aligned_cols=163  Identities=37%  Similarity=0.644  Sum_probs=150.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++.++.+...+.+|....+.....+++..+.+.+||++|...+..++..++..+|++++|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   82 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence            67999999999999999999999999888888888877777788999999999999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.......+.|+++|+||+|+.. +.++.+++++++++++++|+++||++|.|++++|+.|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li  162 (167)
T d1xtqa1          83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999988766677899999999999876 56889999999999999999999999999999999998


Q ss_pred             HHHH
Q psy11135        161 REIK  164 (191)
Q Consensus       161 ~~~~  164 (191)
                      +.+.
T Consensus       163 ~~~~  166 (167)
T d1xtqa1         163 LEAE  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-38  Score=209.38  Aligned_cols=164  Identities=62%  Similarity=0.956  Sum_probs=148.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.|||+++|.+|||||||++++..+.+...+.++..+.......+++..+.+.+||++|.+++...+..++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            36999999999999999999999999888888888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+.........|+++|+||+|+.. ..+..+++.+++++++++|++|||++|.|++++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999887766667899999999999876 56889999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=211.12  Aligned_cols=164  Identities=57%  Similarity=0.986  Sum_probs=150.7

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|.+|||||||++++..+.+...+.++....+......++..+.+.+||++|+..+...+..++++++++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            89999999999999999999999999998888888887777777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      +||++++++++.+..|+..+......++.|+++|+||+|+.. .....+++..+++++ +++|+++||++|.|++++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999988766667899999999999986 567788888888875 689999999999999999999


Q ss_pred             HHHHHH
Q psy11135        159 LVREIK  164 (191)
Q Consensus       159 i~~~~~  164 (191)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=207.78  Aligned_cols=165  Identities=40%  Similarity=0.701  Sum_probs=147.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .++||+++|++|||||||++++..+.+...+.||.+..+......++..+.+.+||++|++.+. .+..++..++++++|
T Consensus         1 ~eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           1 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            3799999999999999999999999998899999887777777889999999999999998764 456678899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~i  159 (191)
                      ||+++++++..+..|+..........+.|+++|+||+|+.. +.++.+++++++++++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998887766555667899999999999976 5789999999999999999999999998 599999999


Q ss_pred             HHHHHhhh
Q psy11135        160 VREIKKDK  167 (191)
Q Consensus       160 ~~~~~~~~  167 (191)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-38  Score=209.70  Aligned_cols=163  Identities=38%  Similarity=0.680  Sum_probs=146.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+|||+++|.+|||||||++++....+...+.+|.+..+.....+++..+.+.+||++|++.+...+..++..++++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999999999999999888888988887777788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ||+++++++..+..|+..+.... ...+.|+++|+||+|+.. +.+..++++++++.++++|+++||++|.|++++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998876543 346789999999999876 6788899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        160 VREIK  164 (191)
Q Consensus       160 ~~~~~  164 (191)
                      ++.+.
T Consensus       161 ~~~~~  165 (171)
T d2erxa1         161 LNLEK  165 (171)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-37  Score=205.81  Aligned_cols=162  Identities=27%  Similarity=0.530  Sum_probs=146.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
                      |+++||+++|.+|||||||++++....+...+.++..... ......++....+.+||++|++++...+..++..+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            7899999999999999999999999998888888777544 444556777788899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      ++||+++++++..+..|+..+... .....|+++|+||+|+.. +.+..++++++++.++++|+++||++|.||+++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999887664 456899999999999976 678889999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        159 LVREI  163 (191)
Q Consensus       159 i~~~~  163 (191)
                      |.+.+
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-36  Score=202.60  Aligned_cols=162  Identities=29%  Similarity=0.553  Sum_probs=144.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+|+|.+|||||||++++.+..+...+.++.+ +.........+..+.+.+|||||++++..++..+++.+|++++|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999988777777766 45555667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+...... .....|+++|+||+|+.. ..++.++++.+++.++++++++||++|.|++++|++|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999999988777653 456789999999999877 56788999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=203.14  Aligned_cols=163  Identities=32%  Similarity=0.522  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+++|.+|||||||++++..+.+...+.++.. +.......+++..+.+.+|||||++++...+..+++.++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            38999999999999999999999988777766665 45556677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+... .....|+++|+||+|+.. ..+..++++.+++..++++++|||++|.||+++|.+|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            9999999999999999888664 445789999999999876 57788999999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+...
T Consensus       164 ~~l~~~  169 (171)
T d2ew1a1         164 CRLISE  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-37  Score=203.38  Aligned_cols=160  Identities=34%  Similarity=0.556  Sum_probs=145.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++..+.+...+.+|.+ +........++..+.+.+||++|+.++...+..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999998888888776 55566677888899999999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+....  ++.|+++|+||+|+.. +.+..+++++++++++++++++||++|.|++++|+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            99999999999999999887654  4689999999999876 56888999999999999999999999999999999998


Q ss_pred             HHHH
Q psy11135        161 REIK  164 (191)
Q Consensus       161 ~~~~  164 (191)
                      +.+.
T Consensus       160 ~~~l  163 (164)
T d1z2aa1         160 EKHL  163 (164)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=199.68  Aligned_cols=159  Identities=30%  Similarity=0.550  Sum_probs=143.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+|+|.+|||||||++++.+..+...+.++.. +.......+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   84 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   84 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEe
Confidence            7999999999999999999999998877776655 444556678899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |+++.+++..+..|+..+... .....|+++++||+|+.. ..+..+++..+++.++++++++||++|.|++++|.+|++
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          85 DITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999888764 456789999999999866 567888999999999999999999999999999999988


Q ss_pred             HH
Q psy11135        162 EI  163 (191)
Q Consensus       162 ~~  163 (191)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=203.42  Aligned_cols=162  Identities=31%  Similarity=0.558  Sum_probs=138.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++..+.+...+.++.... .......++..+.+.+||++|+.++..++..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            5899999999999999999999999988888877744 444666788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++++++.+..|+..+.... ....|+++|+||+|+.. +.++.++++.++++++++++++||++|.|++++|.+|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999998776543 34679999999999876 67899999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=204.65  Aligned_cols=161  Identities=32%  Similarity=0.503  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .+||+++|.+|||||||++++..+.+...+.+|..+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~   88 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   88 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeecc
Confidence            68999999999999999999999999888888888777777778889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAKT  148 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  148 (191)
                      |++++++++.+..|+....+.. .++.|+++|+||+|+.+             +.++.+++++++++++ ++|++|||++
T Consensus        89 d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~  167 (185)
T d2atxa1          89 SVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT  167 (185)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCC
Confidence            9999999998876666655433 45789999999999853             4678899999999998 7999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREIK  164 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~  164 (191)
                      |.|++++|+.+++++.
T Consensus       168 ~~gv~e~F~~li~~il  183 (185)
T d2atxa1         168 QKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-36  Score=202.20  Aligned_cols=161  Identities=31%  Similarity=0.500  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ..||+|+|++|||||||++++..+.+...+.+|..........+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999888888888777777788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAKT  148 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  148 (191)
                      |++++++++.+..|+....... .++.|+++|+||+|+..             ..++.++++.++++++ .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999887776655432 45799999999999864             3478889999999998 4899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy11135        149 RMGVDDAFYTLVREIK  164 (191)
Q Consensus       149 ~~~v~~l~~~i~~~~~  164 (191)
                      |.|++++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=200.61  Aligned_cols=160  Identities=29%  Similarity=0.548  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      |||+++|.+|||||||++++.+..+...+.++.. .........++..+.+.+||++|++.+...+..++..+++++++|
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999998888888776 444455566788899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++.++..+..|+..+.... .++.|+++|+||+|+.+ ..+..+++.++++.++++|++|||++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            9999999999999999887643 35789999999999976 677888999999999999999999999999999999998


Q ss_pred             HHH
Q psy11135        162 EIK  164 (191)
Q Consensus       162 ~~~  164 (191)
                      .++
T Consensus       160 ~l~  162 (164)
T d1yzqa1         160 ALP  162 (164)
T ss_dssp             HSC
T ss_pred             hhC
Confidence            764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-35  Score=201.97  Aligned_cols=170  Identities=35%  Similarity=0.631  Sum_probs=150.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+|+|.+|||||||++++....+...+.++.+... .....+++..+.+.+|||||++++..++..+++.++++++|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998888888777544 44567889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+... .....|+++|+||+|+.. ..+..++...+++..+++++++||++|.|++++|+.|+
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            9999999999999998888664 456789999999999987 67788889999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhh
Q psy11135        161 REIKKDKMLRGKE  173 (191)
Q Consensus       161 ~~~~~~~~~~~~~  173 (191)
                      +.+.+.......+
T Consensus       165 ~~i~~~~~~~~~~  177 (194)
T d2bcgy1         165 RQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHCCHHHHH
T ss_pred             HHHHHHhhhcccC
Confidence            9998766554443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=200.87  Aligned_cols=168  Identities=33%  Similarity=0.522  Sum_probs=152.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +++||+++|.+|||||||++++.+..+...+.++.... ......+++..+.+.+|||||++++..++..++..++++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            57999999999999999999999999877777766543 34456788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      |||+++++++..+..|+..+.........|+++++||.|.....+..+++.++++.++++++++||++|.|++++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999998876667789999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy11135        161 REIKKDKML  169 (191)
Q Consensus       161 ~~~~~~~~~  169 (191)
                      +.+.+.+..
T Consensus       166 ~~l~~~p~l  174 (177)
T d1x3sa1         166 EKIIQTPGL  174 (177)
T ss_dssp             HHHHTSGGG
T ss_pred             HHHccCccc
Confidence            999887643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=198.30  Aligned_cols=163  Identities=31%  Similarity=0.594  Sum_probs=145.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      ..+||+++|.+|||||||++++....+...+.++..... .......+..+.+.+||++|++++...+..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            478999999999999999999999998888777776443 4455677888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      +||+++.+++..+..|+..+.+. ..++.|+++|+||+|+.. +.++.++++.+++.++++|+++||++|.||+++|.+|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999888663 456799999999999876 5788999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy11135        160 VREIKK  165 (191)
Q Consensus       160 ~~~~~~  165 (191)
                      ++.+.+
T Consensus       164 ~~~i~~  169 (170)
T d1r2qa_         164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            887653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=196.95  Aligned_cols=163  Identities=32%  Similarity=0.579  Sum_probs=137.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCC-ccceEEEEEEEcCeEEEEEEEeCCC---hhhHHHHHHhhcccCCE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPT-IEDSYRKQVVIDGETALLDILDTAG---QEEYSAMRDQYMRTGEG   77 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~~~   77 (191)
                      -|||+++|.+|||||||++++.+..... ...++ ..+.+...+.+++..+.+.+||+++   ++++  ++..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            5899999999999999999999876432 23333 3356667778899999999999775   4443  56778999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135         78 FLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      +++|||+++++++..+..|+..+......+++|+++|+||+|+.. +.++.++++++++.++++|+++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999999999999887765567899999999999876 5688999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy11135        157 YTLVREIKKDK  167 (191)
Q Consensus       157 ~~i~~~~~~~~  167 (191)
                      .+|++.+..++
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=196.89  Aligned_cols=163  Identities=31%  Similarity=0.514  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|.+|||||||++++....+...+.++.... .......++..+.+.+||+||++++...+..+++.+++++++
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            3899999999999999999999998888777776644 344566788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||.++++++..+..|+..+.... .++.|+++|+||+|+.. .....+++..+++.++++++++||++|.|++++|.+|.
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            99999999999999999887743 46799999999999865 66778888999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11135        161 REIKKD  166 (191)
Q Consensus       161 ~~~~~~  166 (191)
                      +.+.++
T Consensus       164 ~~i~~~  169 (174)
T d2bmea1         164 RKILNK  169 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=201.23  Aligned_cols=164  Identities=34%  Similarity=0.556  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc----------CeEEEEEEEeCCChhhHHHHHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID----------GETALLDILDTAGQEEYSAMRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~~   71 (191)
                      .+||+++|++|||||||++++.+..+...+.++....+ .....++          ...+.+.+||++|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999888777666655332 2222222          234678999999999999999999


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM  150 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~  150 (191)
                      +++++++++|||++++++++.+..|+..+.........|+++|+||.|+.. +.++.+++++++++++++++++||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999999998776655667789999999999876 6788999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy11135        151 GVDDAFYTLVREIKKD  166 (191)
Q Consensus       151 ~v~~l~~~i~~~~~~~  166 (191)
                      |++++|++|++.+.+.
T Consensus       165 ~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         165 NVEKAVETLLDLIMKR  180 (186)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=197.30  Aligned_cols=161  Identities=33%  Similarity=0.567  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+|+|++|||||||++++.+..+...+.++.. ..........+..+.+.+||++|++.+...+..++..+|++++||
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            7999999999999999999999987777666554 444555566778889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      |++++++++.+..|+..+... ..++.|+++|+||+|+.. +....+++..+++.++++++++||++|.|++++|.+|++
T Consensus        84 d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          84 DITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             eecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999999888764 446789999999999866 567888999999999999999999999999999999999


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+.+
T Consensus       163 ~i~~  166 (173)
T d2a5ja1         163 EIYR  166 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=198.65  Aligned_cols=164  Identities=33%  Similarity=0.629  Sum_probs=116.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++++...+..+++.++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999998887777766666 44555677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||++++.++..+..|+..+... ...+.|+++|+||.|+.. .....+++..++...+++++++||++|.|++++|++|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999888653 456799999999999987 45677788999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy11135        161 REIKKDK  167 (191)
Q Consensus       161 ~~~~~~~  167 (191)
                      +.+.+..
T Consensus       165 ~~i~~k~  171 (173)
T d2fu5c1         165 RDIKAKM  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9886643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-34  Score=192.04  Aligned_cols=164  Identities=32%  Similarity=0.552  Sum_probs=141.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      +-|||+|+|.+|||||||++++..+.+...+.++.... .......++..+.+.+||++|..+....+..++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            45899999999999999999999999888887777644 44455668888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~  156 (191)
                      +||.+++.+++.+..|+..+..+.   ...+.|+++|+||+|+.++.+..++++.++++.+ ++|+++||++|.|++++|
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999998876543   3457899999999999888899999999998875 899999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|++.+..
T Consensus       165 ~~l~~~il~  173 (174)
T d1wmsa_         165 EEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=203.08  Aligned_cols=162  Identities=27%  Similarity=0.502  Sum_probs=137.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      .+||+++|++|||||||++++..+.+...+.+|.+ +........++..+.+.+||++|+..+...+..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999888888888776 44455566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ||++++++++.+..|+..+....  ++.|+++|+||+|+...... ++...+++..+++|+++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCT-TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhh-hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887654  47899999999999875443 4556788889999999999999999999999999


Q ss_pred             HHHhhh
Q psy11135        162 EIKKDK  167 (191)
Q Consensus       162 ~~~~~~  167 (191)
                      .+...+
T Consensus       160 ~l~~~~  165 (170)
T d1i2ma_         160 KLIGDP  165 (170)
T ss_dssp             HHHTCT
T ss_pred             HHccCC
Confidence            887543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-35  Score=195.48  Aligned_cols=162  Identities=34%  Similarity=0.562  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+++|++|||||||++++.++.+...+.++.. ........+++..+.+.+||++|++++...+..+++.++++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            37999999999999999999999887776665554 44566667889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV  160 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~  160 (191)
                      ||+++++++..+..|+..+..+. .++.|+++|+||+|+.+ .....+....+....+.+++++||++|.|++++|++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999887754 46789999999999986 45677777888899999999999999999999999999


Q ss_pred             HHHHh
Q psy11135        161 REIKK  165 (191)
Q Consensus       161 ~~~~~  165 (191)
                      +.+.+
T Consensus       163 ~~i~~  167 (175)
T d2f9la1         163 TEIYR  167 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-35  Score=195.01  Aligned_cols=162  Identities=34%  Similarity=0.617  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      -+||+++|.+|||||||+++++...+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999998888877776 44456677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR  161 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~  161 (191)
                      ||++++++++.+..|+...... .....|++++++|.|+.......++++++++.++++++++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999888877764 455789999999999999889999999999999999999999999999999999998


Q ss_pred             HHHh
Q psy11135        162 EIKK  165 (191)
Q Consensus       162 ~~~~  165 (191)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=192.76  Aligned_cols=161  Identities=32%  Similarity=0.591  Sum_probs=133.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .+||+++|++|||||||++++..+.+..... ++.. +........++..+.+.+|||||++++..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            4899999999999999999999988655443 3333 4445567788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      |||+++++++..+..|+..+... .....|+++|+||+|+.. ..++.+++..+++.++++++++||++|.|++++|++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhc-cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999998887664 345789999999999987 5778899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11135        160 VREIK  164 (191)
Q Consensus       160 ~~~~~  164 (191)
                      ++.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-35  Score=195.14  Aligned_cols=161  Identities=31%  Similarity=0.545  Sum_probs=144.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      .++||+++|++|||||||++++..+.+...+.++.+.. .......++..+.+.+||++|++++...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            57999999999999999999999999888888887744 34566778899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC----CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      |||++++++++.+..|+...... .....|+++|+||+|+..    +.+..++++++++..+++|+++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999999877664 445789999999999754    5788899999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy11135        157 YTLVREI  163 (191)
Q Consensus       157 ~~i~~~~  163 (191)
                      ..|.+.+
T Consensus       161 ~~i~~~i  167 (170)
T d1ek0a_         161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHh
Confidence            9987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-35  Score=196.64  Aligned_cols=163  Identities=33%  Similarity=0.504  Sum_probs=143.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+|+|.+|||||||++++..+.+...+.+|..+........++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC   83 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeee
Confidence            68999999999999999999999999988999998888777788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccC
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAK  147 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~  147 (191)
                      ||++++++++.+..|+...... ...+.|+++|+||+|+..             ......++..++++++ ++|++|||+
T Consensus        84 ~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          84 FSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            9999999999997755554432 245789999999999743             2356678888898888 799999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy11135        148 TRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       148 ~~~~v~~l~~~i~~~~~~  165 (191)
                      +|.||+++|+.|++.+..
T Consensus       163 ~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999988753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=191.93  Aligned_cols=164  Identities=21%  Similarity=0.405  Sum_probs=138.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      |+++||+++|++|||||||++++....+.. +.++....+.....+++..+.+.+||++|+..+     .+++.+|++++
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            689999999999999999999999988754 445666666777788999999999999998874     36788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC---CccCHHHHHHHHHH-cCCCEEEeccCCCCCHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST---WAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~  154 (191)
                      |||++++++++.+..|...+....  .....|+++|+||.|+..   ..++.++++.++++ .+++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988876543  345679999999988754   55788888888665 568999999999999999


Q ss_pred             HHHHHHHHHHhhhhhh
Q psy11135        155 AFYTLVREIKKDKMLR  170 (191)
Q Consensus       155 l~~~i~~~~~~~~~~~  170 (191)
                      +|..+++.+...+.++
T Consensus       157 ~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999998766544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-34  Score=193.10  Aligned_cols=165  Identities=31%  Similarity=0.534  Sum_probs=128.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEE-E-EcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-V-IDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL   80 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   80 (191)
                      -+||+++|++|||||||++++.+.++...+.++......... . .+.....+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            379999999999999999999999988777776654333322 2 34455668999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCC--CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHH
Q psy11135         81 VFAVNSMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLST--WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDD  154 (191)
Q Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~  154 (191)
                      +||++++.++..+..|+..+....   .....|+++|+||+|+..  ..++.++++++++.++ ++|+++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998886543   235789999999999876  3478889999999987 7999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy11135        155 AFYTLVREIKKDK  167 (191)
Q Consensus       155 l~~~i~~~~~~~~  167 (191)
                      +|++|++.+.+.+
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999998886643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-34  Score=193.31  Aligned_cols=172  Identities=32%  Similarity=0.540  Sum_probs=147.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      +||+|+|.+|||||||++++.+..+...+.+|.+ +.........+..+.+.+||++|...+...+..++..+++++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999998888888776 444555667788888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHHH-cCCCEEEeccCCCCCHHHHHHH
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDDAFYT  158 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~l~~~  158 (191)
                      |.+++.++..+..|+..+.....   ..+.|+++|+||+|+.+..+..++...++.. .+++++++||++|.|++++|++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~  162 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT  162 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999988765432   3467999999999998888888888888754 5789999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhh
Q psy11135        159 LVREIKKDKMLRGKEKK  175 (191)
Q Consensus       159 i~~~~~~~~~~~~~~~~  175 (191)
                      |++.+.+.+...+..+.
T Consensus       163 l~~~i~~~~~~~~~~~~  179 (184)
T d1vg8a_         163 IARNALKQETEVELYNE  179 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccccCC
Confidence            99988886665544443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-33  Score=187.81  Aligned_cols=158  Identities=35%  Similarity=0.600  Sum_probs=139.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHH-HHHhhcccCCEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFL   79 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i   79 (191)
                      +-+||+++|.+|||||||++++..+.+...+.++.+... .....+......+.+||++|...... .+..++.++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999998888777776444 45666788888999999999877654 5677899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCC---CCCHHHH
Q psy11135         80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKT---RMGVDDA  155 (191)
Q Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~l  155 (191)
                      +|||++++++++.+..|+..+......++.|+++|+||+|+.. ..++.+++++++++++++++++||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999988776677899999999999976 57899999999999999999999986   5699999


Q ss_pred             HHHH
Q psy11135        156 FYTL  159 (191)
Q Consensus       156 ~~~i  159 (191)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-34  Score=193.88  Aligned_cols=162  Identities=26%  Similarity=0.377  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      ..||+++|.+|||||||++++..+.+...+.++...........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999999888888888777777788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135         83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAKT  148 (191)
Q Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  148 (191)
                      |+++++||+.+..|+...... ..++.|+++|+||+|+..             ..++.+++..++++++ .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             ecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999998877665543 235789999999999842             4578899999999988 5899999999


Q ss_pred             CCC-HHHHHHHHHHHHHh
Q psy11135        149 RMG-VDDAFYTLVREIKK  165 (191)
Q Consensus       149 ~~~-v~~l~~~i~~~~~~  165 (191)
                      |.+ ++++|+.++..+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            984 99999999888764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=182.84  Aligned_cols=157  Identities=18%  Similarity=0.313  Sum_probs=128.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++...++...+.+|.+.... ....+  .+.+.+||+||+..+...+..++..+++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            4899999999999999999999999888777777664333 23334  45689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHH----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QEL----AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~----~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++.+++.....++..+......++.|+++|+||.|+.... ...+. +.+    ++..+++++++||++|.|++++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            9999999999999998888776666789999999999987532 22332 222    22335679999999999999999


Q ss_pred             HHHHHH
Q psy11135        157 YTLVRE  162 (191)
Q Consensus       157 ~~i~~~  162 (191)
                      ++|++.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.7e-31  Score=177.69  Aligned_cols=159  Identities=18%  Similarity=0.237  Sum_probs=124.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||+++|.+..+. ...+|.+.. ....  +...+.+.+||+||++.+...+..++..+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN-IKTL--EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE-EEEE--EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee-eeec--cccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            5899999999999999999999887653 334444432 2223  33445689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++..++.....++..........+.|+++|+||+|+.+.. ..++.....     ...+++++++||++|+|++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc-CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            9999999999988888777665556789999999999987533 333332221     1224578999999999999999


Q ss_pred             HHHHHHHHh
Q psy11135        157 YTLVREIKK  165 (191)
Q Consensus       157 ~~i~~~~~~  165 (191)
                      ++|.+.+.+
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.7e-31  Score=179.54  Aligned_cols=156  Identities=23%  Similarity=0.278  Sum_probs=122.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++.+.++....+ +.+.. ......  ..+.+.+||++|++.+...+..++..+++++++
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~-~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFN-IKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETTEE-EEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCCccee-eeeee-EEEecc--CCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            58999999999999999999998887643332 22211 222233  345689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-H----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-L----AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||+++..++..+..++..+.......+.|+++|+||+|+.... ......+ +    ++...++++++||++|+|++++|
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~  169 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999988888766666789999999999997633 2222222 1    22334679999999999999999


Q ss_pred             HHHHHH
Q psy11135        157 YTLVRE  162 (191)
Q Consensus       157 ~~i~~~  162 (191)
                      ++|.+.
T Consensus       170 ~~l~~~  175 (176)
T d1fzqa_         170 NWVCKN  175 (176)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=3.8e-31  Score=177.29  Aligned_cols=158  Identities=15%  Similarity=0.258  Sum_probs=122.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|++|||||||++++......... +|.... ..  ......+.+.+||+||+..+...+..++..+++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~-~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFN-VE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEE-EE--EEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeee-EE--EeeccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            5799999999999999999999877754433 222222 22  2233345689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ||+++.+++..+..|+..........+.|+++|+||+|+.+.....+....+    ++..++.++++||++|+|++++|+
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~  166 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT  166 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999888887665455679999999999987633222222222    222356799999999999999999


Q ss_pred             HHHHHH
Q psy11135        158 TLVREI  163 (191)
Q Consensus       158 ~i~~~~  163 (191)
                      +|.+.+
T Consensus       167 ~l~~~~  172 (173)
T d1e0sa_         167 WLTSNY  172 (173)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            997653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2e-31  Score=180.05  Aligned_cols=160  Identities=16%  Similarity=0.274  Sum_probs=121.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|.+|||||||++++......... +|.+... ......  .+.+.+||++|++.+...+..++..+++++++
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   91 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV-ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   91 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE-EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE-EEEeeC--CEEEEEEecccccccchhHHhhhccceeEEEE
Confidence            5799999999999999999999877653322 3333222 222333  45689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH-----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL-----AEQFNIPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~l~  156 (191)
                      ||++++.++.....|+..........+.|+++|+||+|+.. ....++....     +...++++++|||++|+|++++|
T Consensus        92 ~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~  170 (182)
T d1moza_          92 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG-ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL  170 (182)
T ss_dssp             EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT-CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred             eeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc-ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHH
Confidence            99999999999988887776655566899999999999865 2233333222     22335679999999999999999


Q ss_pred             HHHHHHHHhh
Q psy11135        157 YTLVREIKKD  166 (191)
Q Consensus       157 ~~i~~~~~~~  166 (191)
                      ++|.+.+.+.
T Consensus       171 ~~l~~~i~~~  180 (182)
T d1moza_         171 DWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988664

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=171.88  Aligned_cols=156  Identities=14%  Similarity=0.221  Sum_probs=126.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (191)
                      +||+++|++|||||||++++.+.++..........    ....+...+.+.+||++|...+...+..++..+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            58999999999999999999988865554433322    22345566779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135         84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQFNIPFIKTSAKTRMGVDDAFYTL  159 (191)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~v~~l~~~i  159 (191)
                      ..++.++..+..|+..+.........|+++++||.|+.......+...    .+++..+++++++||++|+|++++|++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l  156 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  156 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence            999999999999988887766667789999999999876433322222    2334456789999999999999999999


Q ss_pred             HHHH
Q psy11135        160 VREI  163 (191)
Q Consensus       160 ~~~~  163 (191)
                      .+++
T Consensus       157 ~~~l  160 (160)
T d1r8sa_         157 SNQL  160 (160)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            8763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=4.5e-27  Score=157.72  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=117.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+|+|.+|||||||++++.+.++...... ... ........+  ..+.+||++|+......+...+..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~~-~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cce-eEEEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            579999999999999999999999886543322 221 122233343  4488999999998888888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH----HHcCCCEEEeccCCCCCHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA----EQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      +|.++..++.....+.............|+++|+||+|+.......+....+.    ...+++++++||++|+|++++++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~  169 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE  169 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999988877776666555567899999999999876433222222222    22346799999999999999999


Q ss_pred             HHHHHH
Q psy11135        158 TLVREI  163 (191)
Q Consensus       158 ~i~~~~  163 (191)
                      +|.+++
T Consensus       170 ~L~~~l  175 (177)
T d1zj6a1         170 WMMSRL  175 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=3.6e-27  Score=156.84  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=124.4

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|.+|||||||++++.++++.... ++.. ........++  +.+.+||.+|...........+...++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG-FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS-EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc-eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            4899999999999999999999998875433 2222 2222223333  4588899999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHH
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~  157 (191)
                      +|+.+..++.....++............|+++++||.|+.......+.....    +...+++++++||++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~  159 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME  159 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999988888888776666555556678999999999998744433333333    334457899999999999999999


Q ss_pred             HHHHHHHh
Q psy11135        158 TLVREIKK  165 (191)
Q Consensus       158 ~i~~~~~~  165 (191)
                      +|.+.+.+
T Consensus       160 ~l~~~l~~  167 (169)
T d1upta_         160 WLVETLKS  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99887754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=5.2e-26  Score=152.69  Aligned_cols=154  Identities=19%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhccc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMRT   74 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~   74 (191)
                      .|+|+|.+|||||||+++|++...  ......++...........+..  +.+|||||...        +.......+..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeee--eeecccccccccccccchhccccccccccc
Confidence            699999999999999999998763  3444455555555555555555  78899999632        23334456789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCCCHH
Q psy11135         75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVD  153 (191)
Q Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~  153 (191)
                      +|++++|+|++++..... ..+...+...  ..+.|+++|+||+|+...  ..+....+...++ ..++++||+++.|++
T Consensus        85 ad~il~v~D~~~~~~~~~-~~i~~~l~~~--~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~iSA~~~~gi~  159 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPED-ELVARALKPL--VGKVPILLVGNKLDAAKY--PEEAMKAYHELLPEAEPRMLSALDERQVA  159 (178)
T ss_dssp             CSEEEEEEETTSCCCHHH-HHHHHHHGGG--TTTSCEEEEEECGGGCSS--HHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred             ccceeeeechhhhhcccc-cchhhheecc--ccchhhhhhhcccccccC--HHHHHHHHHhhcccCceEEEecCCCCCHH
Confidence            999999999988644221 2333334332  346899999999998652  2233445555555 478999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11135        154 DAFYTLVREIKK  165 (191)
Q Consensus       154 ~l~~~i~~~~~~  165 (191)
                      +++++|.+.+.+
T Consensus       160 ~L~~~i~~~lpe  171 (178)
T d1wf3a1         160 ELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHTTCCB
T ss_pred             HHHHHHHHhCCC
Confidence            999999887754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.6e-25  Score=147.93  Aligned_cols=150  Identities=28%  Similarity=0.368  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH--------HHHHHhhcc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY--------SAMRDQYMR   73 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~   73 (191)
                      +||+++|.+|||||||+++|++...  ....+.++...........+..  +.++|+||..+.        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCce--eeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998773  2334444445545555555554  778999994321        123345578


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|++++++|..+..+......|...+...  ..+.|+++|+||+|+.......      .+..+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLGM------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCEE------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHHH------HHhCCCcEEEEECCCCCCHH
Confidence            899999999999887766666655555443  3468999999999986532211      12235689999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        154 DAFYTLVREI  163 (191)
Q Consensus       154 ~l~~~i~~~~  163 (191)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=2.2e-24  Score=144.71  Aligned_cols=159  Identities=16%  Similarity=0.146  Sum_probs=107.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce--------EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhc
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS--------YRKQVVIDGETALLDILDTAGQEEYSAMRDQYM   72 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~   72 (191)
                      |+.++|+++|++++|||||+|+|++.......+.+..+.        .......++.  .+.++|+||+.++.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY--RITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTE--EEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCc--cccccccccccccccchhhhh
Confidence            578999999999999999999999654322221111111        1111223343  478899999999988888889


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHHHHHHHc----CCCEEEec
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQELAEQF----NIPFIKTS  145 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~----~~~~~~~s  145 (191)
                      ..+|++++++|+.+...... ...+..+..    .+.|+++|+||+|+...+..   .+..+.+.+..    +.+++++|
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iS  155 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS  155 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred             hhccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            99999999999988543222 222222322    36899999999998762211   11122222221    36899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy11135        146 AKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      |++|+|++++++.|.+.+.+.
T Consensus       156 A~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         156 AKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHS
T ss_pred             ccCCcCHHHHHHHHHhcCCcc
Confidence            999999999999999888764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.1e-25  Score=148.51  Aligned_cols=160  Identities=18%  Similarity=0.104  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-------HHHHHhhcccCCE
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-------SAMRDQYMRTGEG   77 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~   77 (191)
                      .|+++|.+|||||||+|+|++...........................+.+|||||....       .......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            388999999999999999987764222222222222222333333345789999994321       1122344678899


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135         78 FLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA  155 (191)
Q Consensus        78 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l  155 (191)
                      +++++|....  +.......++.....  ...+.|+++|+||+|+...+ ..++..+.....+.+++++||++|+|++++
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEE-AVKALADALAREGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHH-HHHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence            9999998653  233333333322211  11246999999999997632 223344445566889999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy11135        156 FYTLVREIKKDK  167 (191)
Q Consensus       156 ~~~i~~~~~~~~  167 (191)
                      ++.|.+.+....
T Consensus       160 ~~~i~~~l~~~~  171 (180)
T d1udxa2         160 KEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHhhcC
Confidence            999988886543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-24  Score=142.63  Aligned_cols=152  Identities=20%  Similarity=0.321  Sum_probs=117.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV   84 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   84 (191)
                      ||+++|++|||||||++++.+..+.. ..++..... ......+.  ...+||++|..........++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS-EELAIGNI--KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE-EEECCTTC--CEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE-EEeccCCe--eEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            79999999999999999999988643 334443332 22333333  478899999999998999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH------------HHcCCCEEEeccCCCCCH
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA------------EQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~~v  152 (191)
                      ++..++.....++..........+.|+++++||.|+... ....+.....            ....+++++|||++|+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC-CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc-CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999998888888877777666778999999999998652 2333322221            112346899999999999


Q ss_pred             HHHHHHHHH
Q psy11135        153 DDAFYTLVR  161 (191)
Q Consensus       153 ~~l~~~i~~  161 (191)
                      +++|++|.+
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4e-25  Score=150.19  Aligned_cols=157  Identities=19%  Similarity=0.141  Sum_probs=112.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|..|||||||++++...+++..+.        ....++...+.+++||++|++.+...+..+++.+++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~--------~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI--------VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE--------EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE--------EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            68999999999999999999998776643321        1223444455689999999999999999999999999999


Q ss_pred             EeCCChhhHH----------HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC----------------CccCHHHHH----
Q psy11135         82 FAVNSMKSFE----------DIGSYREQIKRVKDAEEVPMVLVGNKCDLST----------------WAVDMNQAQ----  131 (191)
Q Consensus        82 ~d~~~~~s~~----------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------------~~~~~~~~~----  131 (191)
                      ||+++.+++.          ....++..+.........|+++++||+|+..                ......+..    
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9998877542          2233333443334456789999999998621                111122221    


Q ss_pred             -HHHHH------cCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        132 -ELAEQ------FNIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       132 -~~~~~------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                       .+.+.      ..+.++++||+++.||+++|+.+.+.+.+.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence             11111      124577899999999999999998877653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=4.1e-24  Score=143.95  Aligned_cols=157  Identities=18%  Similarity=0.315  Sum_probs=112.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      ++.||+++|++|||||||++++.+..+....+ +..... .....++..  +.+||+.++..+...+.......++++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPTS-EELTIAGMT--FTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------C-CCCCSC-EEEEETTEE--EEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceec-ccccce-eEEEecccc--cccccccchhhhhhHHhhhhcccceeeee
Confidence            57899999999999999999999888655432 322222 223455544  67899999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc-----------------CCCEEEe
Q psy11135         82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF-----------------NIPFIKT  144 (191)
Q Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~  144 (191)
                      +|+++...+.....++..........+.|+++++||.|+.. .....+..+.....                 ++++++|
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC  166 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc-cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEE
Confidence            99999998887777666655544556899999999999865 33444443333221                 2458999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q psy11135        145 SAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~  163 (191)
                      ||++|+|++++|++|.+++
T Consensus       167 SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         167 SVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             BTTTTBSHHHHHHHHHTTC
T ss_pred             eCCCCCCHHHHHHHHHHhh
Confidence            9999999999999998653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.2e-25  Score=152.09  Aligned_cols=160  Identities=21%  Similarity=0.153  Sum_probs=117.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +++||+++|..|||||||++++....+  .+.||.+....   .+....+.+++||++|++.+...+..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            689999999999999999999987776  35577764332   2444556689999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-----------------CccCHHHHHHH
Q psy11135         82 FAVNSMK-----------SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-----------------WAVDMNQAQEL  133 (191)
Q Consensus        82 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----------------~~~~~~~~~~~  133 (191)
                      ||.++..           ..+....|...+.. ....+.|+++++||.|+..                 ...+.+....+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~-~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHC-GGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhh-hhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            9998754           23444455544443 3456889999999999732                 11122222222


Q ss_pred             HH----H------cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        134 AE----Q------FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       134 ~~----~------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ..    .      ..+.++++||+++.|++++|+.+.+.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            11    1      1244789999999999999999988887543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.7e-24  Score=142.65  Aligned_cols=155  Identities=21%  Similarity=0.263  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HHHHHHhhcc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YSAMRDQYMR   73 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~   73 (191)
                      .|+++|.+|||||||+++|++...  .....+++...........+  ..+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            589999999999999999997663  23344444433333333333  4478899999321         2233444567


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD  153 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  153 (191)
                      .+|+++++.+.+...... ...++..+...    +.|+++|+||+|+.. +...+...++.+....+++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~----~~pviiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRKS----TVDTILVANKAENLR-EFEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHHH----TCCEEEEEESCCSHH-HHHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeeccccccccc-ccccccccccc----cccccccchhhhhhh-hhhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            899999999987654332 23344444432    579999999999853 111222233333334578999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy11135        154 DAFYTLVREIKKDK  167 (191)
Q Consensus       154 ~l~~~i~~~~~~~~  167 (191)
                      +++++|.+.+.+..
T Consensus       154 ~L~~~i~~~l~e~~  167 (171)
T d1mkya1         154 TMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999887643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=9.9e-24  Score=139.05  Aligned_cols=148  Identities=26%  Similarity=0.307  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------H-HHHHHhhc
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------Y-SAMRDQYM   72 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~-~~~~~~~~   72 (191)
                      +||+++|.+|||||||+|+|++..  .......++..........++..  +.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCee--EEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999776  33444444444444445555554  78899999321        1 11222336


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135         73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV  152 (191)
Q Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  152 (191)
                      ..+|++++++|.+++.......-+ ..+      ...++++++||.|+.... ..++... ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~~-~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEKI-NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCCC-CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccchh-hhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            789999999999987654433221 111      246899999999998743 3333221 1123468999999999999


Q ss_pred             HHHHHHHHHH
Q psy11135        153 DDAFYTLVRE  162 (191)
Q Consensus       153 ~~l~~~i~~~  162 (191)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=7.9e-23  Score=137.63  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChh---------------hHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQE---------------EYSAMR   68 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------------~~~~~~   68 (191)
                      .|+++|.+|||||||+|+|++..... .++.++.....    +....  +.++||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~----~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE----IEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE----EEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc----ccccc--ceecccCCceeccccccccccccchhhhhhh
Confidence            48999999999999999999877543 33334433222    22223  5689999931               122233


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHH------HHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC----
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGS------YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN----  138 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----  138 (191)
                      ....+.+|++++++|...+........      ....+.......+.|+++|+||+|+....  ......+.....    
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH--HHHHHHHHHHhccccc
Confidence            445677999999999976433221111      00111111222468999999999976521  122222333332    


Q ss_pred             ---CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135        139 ---IPFIKTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       139 ---~~~~~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                         ..++++||++|.|+++++++|.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence               248899999999999999999988875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.7e-24  Score=144.15  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=109.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV   81 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   81 (191)
                      +.+||+++|.+|||||||++++.   +...+.||.+.. ...  ++.....+.+||++|+..+...+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~-~~~--~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIH-EYD--FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEE-EEE--EEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeE-EEE--EeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999994   334556676633 222  344455589999999999999999999999999999


Q ss_pred             EeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-----------------ccCHHHHHHHH
Q psy11135         82 FAVNSMK----------SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-----------------AVDMNQAQELA  134 (191)
Q Consensus        82 ~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----------------~~~~~~~~~~~  134 (191)
                      |+.++..          .+.....++..+.......+.|+++++||+|+...                 ....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998743          34445555555555455568999999999997320                 11223333322


Q ss_pred             HH----c-------CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        135 EQ----F-------NIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       135 ~~----~-------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                      ..    .       .+.++++||+++.||+++|+.+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            21    1       245678999999999999999888776543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.1e-23  Score=139.94  Aligned_cols=156  Identities=22%  Similarity=0.245  Sum_probs=103.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH------------HHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS------------AMR   68 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~   68 (191)
                      .+||+++|.+|||||||+|+|++...  ......++..........++..  +.++|+||.....            ...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHHH
Confidence            58999999999999999999998763  3444445444444455666666  6789999954322            233


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHHHHH-HHHHc----CCCEE
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQE-LAEQF----NIPFI  142 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~-~~~~~----~~~~~  142 (191)
                      ...+..+|++++++|+.....- ....+...+..    .+.|+++|+||+|+... .....+..+ +....    ..+++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITR-QDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhcCCEEEEeecccccchh-hHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            4446779999999999875432 22333333333    36799999999998652 223333332 22222    35899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHh
Q psy11135        143 KTSAKTRMGVDDAFYTLVREIKK  165 (191)
Q Consensus       143 ~~s~~~~~~v~~l~~~i~~~~~~  165 (191)
                      ++||++|.|++++++.|.+.+..
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999776654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-21  Score=133.44  Aligned_cols=117  Identities=19%  Similarity=0.330  Sum_probs=86.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-HHHHhhcccCCEEEEEEe
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-AMRDQYMRTGEGFLLVFA   83 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~v~d   83 (191)
                      +|+++|++|||||||++++.+..+...+ ++...........++..+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6899999999999999999998876554 34443333322234556678999999998875 567788899999999999


Q ss_pred             CCChhh-HHHHHHHHHHHHh-h-cCCCCCcEEEEEecCCCCC
Q psy11135         84 VNSMKS-FEDIGSYREQIKR-V-KDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        84 ~~~~~s-~~~~~~~~~~~~~-~-~~~~~~p~ivv~nK~D~~~  122 (191)
                      +++..+ +.....++..+.. . ......|++||+||+|+..
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            999665 3444444444432 1 2334689999999999976

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.8e-23  Score=141.01  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHH-------HHHhhcccC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSA-------MRDQYMRTG   75 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~   75 (191)
                      +|+++|++|||||||+|+|.+... ...+.+++.......... ++..  +.+|||||..+...       .....+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS--FVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCE--EEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcE--EEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            589999999999999999987663 233334433332323333 3444  77899999643111       112224567


Q ss_pred             CEEEEEEeCCChhhHHHHH---HHHHHHHh-hcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc--CCCEEEeccCCC
Q psy11135         76 EGFLLVFAVNSMKSFEDIG---SYREQIKR-VKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF--NIPFIKTSAKTR  149 (191)
Q Consensus        76 ~~~i~v~d~~~~~s~~~~~---~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~  149 (191)
                      +.++++++....+......   .+...... .....++|+++|+||+|+..   ..+....+.+.+  +.+++++||++|
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~---~~~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE---AAENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT---HHHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh---HHHHHHHHHHHhccCCcEEEEECCCC
Confidence            8888888766543222221   11111111 12334689999999999875   223345555555  578999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy11135        150 MGVDDAFYTLVREIKK  165 (191)
Q Consensus       150 ~~v~~l~~~i~~~~~~  165 (191)
                      .|++++++.|.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999888754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.2e-21  Score=131.68  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC---CCccCCccceEEEEEEEcCeEEEEEEEeCCChh-------------hHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-------------EYSAMR   68 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~   68 (191)
                      +|+|+|.+|||||||+|+|++....   .....++...  ........   +.+.|++|..             ......
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~--~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeec--cccccccc---ceEEEEEeeccccccccccchhhhHHhhh
Confidence            7999999999999999999976521   1222222221  11222222   3456666621             111122


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc----CCCEEEe
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF----NIPFIKT  144 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~  144 (191)
                      ...+..++++++++|++++..- .-..+++.+..    .+.|+++|+||+|+.+.....+..+.+.+.+    +.+++++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhccccccc-ccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence            2345567899999999764321 12333333433    3679999999999876443334444444443    3579999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q psy11135        145 SAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       145 s~~~~~~v~~l~~~i~~~~  163 (191)
                      ||++|.|+++++++|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=6.4e-22  Score=134.33  Aligned_cols=159  Identities=19%  Similarity=0.143  Sum_probs=103.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCCC---C-ccCCcc-ceEEEEEE--------------------EcCeEEEEEEE
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD---E-YDPTIE-DSYRKQVV--------------------IDGETALLDIL   56 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~-~~~~~~-~~~~~~~~--------------------~~~~~~~~~~~   56 (191)
                      +.++|+++|+.++|||||+++|.+.....   . ....+. ..+.....                    .......+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            46899999999999999999998643111   0 001110 10111000                    01123458899


Q ss_pred             eCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH---HHHHH
Q psy11135         57 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN---QAQEL  133 (191)
Q Consensus        57 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~  133 (191)
                      |+||+..+.......+..+|+++++.|+.+........+.+..+... .  ..++++++||+|+.+.....+   ...++
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-G--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-c--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            99999999988888899999999999998853222223333333332 1  246888999999876322222   22333


Q ss_pred             HHHcC---CCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        134 AEQFN---IPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       134 ~~~~~---~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      ....+   ++++++||++|+|++++++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            33332   6899999999999999999987754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.2e-22  Score=140.99  Aligned_cols=156  Identities=18%  Similarity=0.176  Sum_probs=99.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEE----------------EEcCeEEEEEEEeCCChhhHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQV----------------VIDGETALLDILDTAGQEEYSAMR   68 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~~D~~g~~~~~~~~   68 (191)
                      |+++|++++|||||+++|++........+..... .....                .++.....+.++||||+..+....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998754221111111100 00000                122233457899999999887777


Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--------------H-------
Q psy11135         69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--------------M-------  127 (191)
Q Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------------~-------  127 (191)
                      ...+..+|++++|+|+.+.-.... ...+..+..    .+.|+++|+||+|+......              .       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            777889999999999977433222 222233332    46899999999998652211              0       


Q ss_pred             HHHH----HHHHHc--------------CCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135        128 NQAQ----ELAEQF--------------NIPFIKTSAKTRMGVDDAFYTLVREIKKD  166 (191)
Q Consensus       128 ~~~~----~~~~~~--------------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~  166 (191)
                      ....    .+....              .++++++||.+|.|++++++.|.....+.
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            0000    111110              14689999999999999999988766543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=4e-21  Score=131.30  Aligned_cols=159  Identities=19%  Similarity=0.193  Sum_probs=100.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC---cc--CCcc-ceEEEEEEE------------------------cCeEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE---YD--PTIE-DSYRKQVVI------------------------DGETAL   52 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~--~~~~-~~~~~~~~~------------------------~~~~~~   52 (191)
                      .++|+++|+.++|||||+++|++......   ..  .+.. .........                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            48999999999999999999986331100   00  0000 000000000                        011235


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH--
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA--  130 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--  130 (191)
                      +.++|+||+.++.......+..+|++++++|+.+.-.-...++.+..+...   ...|++|++||+|+..........  
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHHHH
Confidence            789999999999888888899999999999997742111222233222221   124889999999997633222222  


Q ss_pred             -HHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        131 -QELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       131 -~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                       ..+....   +++++++||++|.|++++++.|...++
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence             2222222   368999999999999999999887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4e-21  Score=132.74  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF   82 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   82 (191)
                      .+||+++|..|||||||++++...++    .||.+-. ...+.+++  +.+++||++|+..++..|..++..++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~   78 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV   78 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEEE
Confidence            68999999999999999999976554    3455522 23344554  45899999999999999999999999999999


Q ss_pred             eCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-----c----------------------
Q psy11135         83 AVNSMK----------SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-----V----------------------  125 (191)
Q Consensus        83 d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~----------------------  125 (191)
                      |.++..          .+.+...++..+.......+.|++|++||+|+....     .                      
T Consensus        79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~  158 (221)
T d1azta2          79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEP  158 (221)
T ss_dssp             ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCT
T ss_pred             EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccC
Confidence            998643          333444444455444445679999999999983310     0                      


Q ss_pred             ----CHHHHHH-----HHHHc--------CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135        126 ----DMNQAQE-----LAEQF--------NIPFIKTSAKTRMGVDDAFYTLVREIKKDK  167 (191)
Q Consensus       126 ----~~~~~~~-----~~~~~--------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~  167 (191)
                          ...++..     +.+..        .+.++++||.++.+++.+|+.+.+.+....
T Consensus       159 g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         159 GEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                0112222     21111        134678999999999999999877776543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=8.3e-20  Score=123.28  Aligned_cols=157  Identities=19%  Similarity=0.154  Sum_probs=101.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-------C---------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-------F---------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +.++|+++|+.++|||||+++|.+..       .         ..+..... +.......+......+.++|+||+.++.
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgi-Ti~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE-EEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCc-cCCcceEEEEeceeeEEeecCcchHHHH
Confidence            45899999999999999999997521       0         00000000 0111122334444458889999999998


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH----HHHHHHHHcC---
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN----QAQELAEQFN---  138 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~---  138 (191)
                      ......+..+|++++++|+.+.-.-. ..+.+.....+   ...|+|+++||+|+.......+    +.+.+...++   
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            88888899999999999998743221 22222232222   2357899999999875221111    2334444443   


Q ss_pred             --CCEEEeccCCC----------CCHHHHHHHHHHHH
Q psy11135        139 --IPFIKTSAKTR----------MGVDDAFYTLVREI  163 (191)
Q Consensus       139 --~~~~~~s~~~~----------~~v~~l~~~i~~~~  163 (191)
                        ++++++|+++|          .++.+++++|.+.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence              57999999987          47888888876654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.9e-19  Score=120.31  Aligned_cols=154  Identities=19%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--HHH-------hhcc
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--MRD-------QYMR   73 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~-------~~~~   73 (191)
                      .|+++|.+|||||||+|+|++....  .....++..........+...  +..+|++|......  ...       ....
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccchh
Confidence            4889999999999999999987732  223333334444444444444  55688888543221  111       1223


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcC-CCEEEeccCCCCC
Q psy11135         74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFN-IPFIKTSAKTRMG  151 (191)
Q Consensus        74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~-~~~~~~s~~~~~~  151 (191)
                      .+++++++.|..+....  ...+...+..    ...|.++|+||+|+.... ........+...++ .+++++||++|.|
T Consensus        85 ~~~~~l~~~d~~~~~~~--~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          85 DVELVIFVVEGTRWTPD--DEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CEEEEEEEEETTCCCHH--HHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hcceeEEEEecCccchh--HHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            46667777777653322  2222222222    356899999999987632 22334455566666 5899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11135        152 VDDAFYTLVREIKKD  166 (191)
Q Consensus       152 v~~l~~~i~~~~~~~  166 (191)
                      ++++++.|.+.+.+.
T Consensus       159 i~~L~~~i~~~lpe~  173 (179)
T d1egaa1         159 VDTIAAIVRKHLPEA  173 (179)
T ss_dssp             HHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999998877554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.8e-19  Score=120.36  Aligned_cols=115  Identities=15%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhh----cccCCEEE
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQY----MRTGEGFL   79 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~~~~i   79 (191)
                      -.|+++|++|||||||+|+|.+.++...   ++..........++.  .+.+||+||+..+...+..+    ...++.++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADYDGS--GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTGGGS--SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEEEeCCe--EEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            4789999999999999999998875422   222222332233344  47889999998765544433    44567888


Q ss_pred             EEEeCCC-hhhHHHHHHHHHHHH---hhcCCCCCcEEEEEecCCCCCC
Q psy11135         80 LVFAVNS-MKSFEDIGSYREQIK---RVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        80 ~v~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      +++|..+ ..++.....|+..+.   ......+.|+++|+||+|+...
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888664 555556655554332   2345568999999999998763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=2.3e-18  Score=117.06  Aligned_cols=139  Identities=18%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC--C---C--C-----Ccc------CCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH--F---V--D-----EYD------PTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~--~---~--~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      +.++|+++|+.++|||||+++|+...  .   .  .     ++.      ..+-+.....+..++..  +.++||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~--i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRH--YSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCE--EEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeE--EEEEeCCCchh
Confidence            35899999999999999999996321  0   0  0     000      11112223334445554  78899999999


Q ss_pred             HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCH----HHHHHHHHHcC
Q psy11135         64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDM----NQAQELAEQFN  138 (191)
Q Consensus        64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~----~~~~~~~~~~~  138 (191)
                      +-......+..+|++++|+|+.+.-..... +.+.....    .++| +++++||+|+.+.....    ++...+...++
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~  154 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  154 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence            998888889999999999999875443322 22222222    3555 77889999986522111    22333333333


Q ss_pred             -----CCEEEeccC
Q psy11135        139 -----IPFIKTSAK  147 (191)
Q Consensus       139 -----~~~~~~s~~  147 (191)
                           +++++.|+.
T Consensus       155 ~~~~~i~~i~~sa~  168 (204)
T d2c78a3         155 FPGDEVPVIRGSAL  168 (204)
T ss_dssp             SCTTTSCEEECCHH
T ss_pred             CCcccceeeeeech
Confidence                 467887764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=1.8e-17  Score=113.74  Aligned_cols=146  Identities=18%  Similarity=0.129  Sum_probs=91.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC----------CccCCcc--------------------ceEEEEEEEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD----------EYDPTIE--------------------DSYRKQVVIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~----------~~~~~~~--------------------~~~~~~~~~~~~~   50 (191)
                      -+||+++|+.++|||||+.+|+...  ...          ....+..                    +.......+....
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~   88 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK   88 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence            4789999999999999999996422  100          0000000                    0000111122223


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCCc--c--
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTWA--V--  125 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~--~--  125 (191)
                      ..+.++|+||+..+-.........+|++++|+|+.+.-.-... +.+.....    .++ .+++++||+|+.+..  .  
T Consensus        89 ~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          89 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASL----LGIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHH----cCCCEEEEEEEccccccccceehh
Confidence            3488899999999998888889999999999999874332222 22222222    244 489999999997621  1  


Q ss_pred             -CHHHHHHHHHHcC-----CCEEEeccCCCCCHH
Q psy11135        126 -DMNQAQELAEQFN-----IPFIKTSAKTRMGVD  153 (191)
Q Consensus       126 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  153 (191)
                       ..++...+.+..+     ++++++||.+|.|+.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence             1122344555554     368999999999873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.9e-18  Score=113.56  Aligned_cols=155  Identities=14%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChh-------hHHHH---HHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQE-------EYSAM---RDQ   70 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~---~~~   70 (191)
                      .++|+++|.+|||||||+|+|.+.....  ...+++...... .........+...+.++..       .....   ...
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL-FEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE   94 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE-EEEETTEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccc-eecccccceeeeecccccchhhhhhhhhhhhhhhhhh
Confidence            5899999999999999999998876322  222222222222 2222222222222222211       11111   112


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH---c--CCCEEEec
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ---F--NIPFIKTS  145 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~--~~~~~~~s  145 (191)
                      .......++.+.+........ ...++..+..    ...++++++||+|+............+.+.   +  ..+++++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vS  169 (188)
T d1puia_          95 KRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS  169 (188)
T ss_dssp             HCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred             hhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            223344455555554433222 2233333333    257899999999987633222333333322   2  24789999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy11135        146 AKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       146 ~~~~~~v~~l~~~i~~~~  163 (191)
                      |++|.|++++++.|.+.+
T Consensus       170 A~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         170 SLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.1e-17  Score=117.70  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             Cee-EEEEEcCCCCCHHHHHHHHHhCCCCCCcc-----C-Cc-------------cceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135          2 AEY-KLVVVGAGGVGKSALTIQLIQNHFVDEYD-----P-TI-------------EDSYRKQVVIDGETALLDILDTAGQ   61 (191)
Q Consensus         2 ~~~-~i~v~G~~~~GKStli~~l~~~~~~~~~~-----~-~~-------------~~~~~~~~~~~~~~~~~~~~D~~g~   61 (191)
                      +.+ +|+++|+.|+|||||+.+++...-.....     . +.             -......+.+++..  +.++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~--~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHR--INIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEE--EEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeE--EEEecCCch
Confidence            455 59999999999999999996322111100     0 00             01112233445554  888999999


Q ss_pred             hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      .++.......+..+|+.++|+|..+.-......- ++...    ..++|.++++||+|.
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a~----~~~lP~i~fINKmDr  135 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAE----KYKVPRIAFANKMDK  135 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHHH----TTTCCEEEEEECTTS
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHH-HHHHH----HcCCCEEEEEecccc
Confidence            9999888888999999999999988543333333 33333    347999999999998

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=6.7e-17  Score=111.43  Aligned_cols=148  Identities=16%  Similarity=0.218  Sum_probs=93.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC-CCCC-------------------------------ccCCccceEEEEEEEcCe
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH-FVDE-------------------------------YDPTIEDSYRKQVVIDGE   49 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~-------------------------------~~~~~~~~~~~~~~~~~~   49 (191)
                      +.++|+++|+.++|||||+.+|+... ....                               ....+  .......++..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~t--i~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT--INLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCcc--ccceEEEEecC
Confidence            46899999999999999999986321 0000                               00000  00111123333


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF------EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.++||||+.+|.......+.-+|++++|+|+.+...-      ....+.+.....   ....++++++||+|+...
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSS
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccCCCc
Confidence            45588999999999999999999999999999999874211      111222111111   123468999999998764


Q ss_pred             ccCHHH-------HHHHHHHcC-----CCEEEeccCCCCCHHH
Q psy11135        124 AVDMNQ-------AQELAEQFN-----IPFIKTSAKTRMGVDD  154 (191)
Q Consensus       124 ~~~~~~-------~~~~~~~~~-----~~~~~~s~~~~~~v~~  154 (191)
                      ......       ...+...++     ++++++||..|.|+.+
T Consensus       157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            433322       233444443     4689999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=8.7e-16  Score=107.69  Aligned_cols=109  Identities=18%  Similarity=0.257  Sum_probs=75.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----cC-C-------------ccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFVDEY-----DP-T-------------IEDSYRKQVVIDGETALLDILDTAGQEEYS   65 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----~~-~-------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   65 (191)
                      +|+++|+.++|||||+.+++...-....     .. +             +-......+.+++..  +.++||||+.++.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~--~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHR--VFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEE--EEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccc--eeEEccCchhhhh
Confidence            4899999999999999999633211110     00 0             111112234455555  7889999999999


Q ss_pred             HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135         66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL  120 (191)
Q Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  120 (191)
                      ......++.+|++++|+|+.+.-.......| +....    .++|.++++||+|.
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----LGLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECGGG
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----cccccccccccccc
Confidence            9999999999999999999875443333333 33333    36899999999996

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=1.3e-16  Score=111.07  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-C--------------Ccc---------CCccceE------EEEEEEcCeEEE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV-D--------------EYD---------PTIEDSY------RKQVVIDGETAL   52 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~--------------~~~---------~~~~~~~------~~~~~~~~~~~~   52 (191)
                      .++|+++|+.++|||||+.+|+...-. .              ...         .......      .....+......
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            468999999999999999999532100 0              000         0000000      000112223345


Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHH------HHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCCcc
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFE------DIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTWAV  125 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~  125 (191)
                      +.++|+||+..+..........+|++++|+|+.+..--.      ...+.+..+..    .+. ++++++||+|+.....
T Consensus       104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSS
T ss_pred             eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCccch
Confidence            889999999999988888899999999999997732100      11222222222    234 5889999999976443


Q ss_pred             CHHHH-------HHHHHHc-------CCCEEEeccCCCCCHHHHHH
Q psy11135        126 DMNQA-------QELAEQF-------NIPFIKTSAKTRMGVDDAFY  157 (191)
Q Consensus       126 ~~~~~-------~~~~~~~-------~~~~~~~s~~~~~~v~~l~~  157 (191)
                      ..+..       ..+.++.       .++++++||++|+|+.++++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            33322       2222222       24799999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.4e-16  Score=110.43  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CC----------------CC-------------c-cCCccceEEEEEEEcCeE
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FV----------------DE-------------Y-DPTIEDSYRKQVVIDGET   50 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~----------------~~-------------~-~~~~~~~~~~~~~~~~~~   50 (191)
                      .++|+++|+.++|||||+.+|+...  +.                ..             . ...+-+.....+.+++  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            4899999999999999999996311  10                00             0 0000111122233344  


Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCC
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF------EDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTW  123 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  123 (191)
                      ..+.++|+|||.+|-.........+|++++++|+.....-      ....+.+.....    .++| +++++||+|+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence            4588999999999999888899999999999999764210      011222222222    2444 7889999998762


Q ss_pred             ccC-----HHHHHHHHHHcC-----CCEEEeccCCCCCHH
Q psy11135        124 AVD-----MNQAQELAEQFN-----IPFIKTSAKTRMGVD  153 (191)
Q Consensus       124 ~~~-----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  153 (191)
                      ...     .++...+....+     ++++++|+..|.|+-
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            211     123344444444     568999999998863

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.1e-15  Score=110.46  Aligned_cols=156  Identities=15%  Similarity=0.077  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC------CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-----HHHhh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHFV------DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-----MRDQY   71 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~   71 (191)
                      +++|+++|.+|+|||||+|+|.+....      .+..+++.+...+. ..++..  +.+|||||......     .....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~--~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPN--VVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTT--EEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCe--EEEEeCCCcccccccHHHHHHHhh
Confidence            689999999999999999999985421      12222333322221 122333  67899999653221     22334


Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------CccCHHHH-HH-------HHH
Q psy11135         72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------WAVDMNQA-QE-------LAE  135 (191)
Q Consensus        72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~-~~-------~~~  135 (191)
                      +..+|.++++.|..-.+.   -...+..+..    .+.|+++|.||+|...        .....+.. ..       ...
T Consensus       133 ~~~~d~~l~~~~~~~~~~---d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKN---DIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGGCSEEEEEESSCCCHH---HHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHH---HHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            666888888776543221   1233334443    3689999999999631        11122211 11       122


Q ss_pred             HcC---CCEEEeccCC--CCCHHHHHHHHHHHHHhhhh
Q psy11135        136 QFN---IPFIKTSAKT--RMGVDDAFYTLVREIKKDKM  168 (191)
Q Consensus       136 ~~~---~~~~~~s~~~--~~~v~~l~~~i~~~~~~~~~  168 (191)
                      ..+   .++|.+|..+  .+++..+.+.+.+.+++.+.
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence            223   3578888764  56899999999888876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.64  E-value=5.2e-15  Score=103.80  Aligned_cols=119  Identities=19%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-------HHHHHH--h
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-------YSAMRD--Q   70 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~--~   70 (191)
                      .+++|+++|.+|+|||||+|++++....  +...+++..........++..  +.++||||..+       ......  .
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~--i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE--EEEEeeecccCCcchHHHHHHHHHHHH
Confidence            4789999999999999999999988732  344456655556666677665  78899999532       111111  2


Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCC
Q psy11135         71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLST  122 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~  122 (191)
                      .....+++++|++++...--......+..+..... .-..++++|.||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            23457888899888653211111222222222111 11247999999999876

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.9e-14  Score=102.39  Aligned_cols=114  Identities=24%  Similarity=0.316  Sum_probs=77.0

Q ss_pred             eeE-EEEEcCCCCCHHHHHHHHHhCC--CCCC---------cc-------CCccceEEEEEEE--------------cCe
Q psy11135          3 EYK-LVVVGAGGVGKSALTIQLIQNH--FVDE---------YD-------PTIEDSYRKQVVI--------------DGE   49 (191)
Q Consensus         3 ~~~-i~v~G~~~~GKStli~~l~~~~--~~~~---------~~-------~~~~~~~~~~~~~--------------~~~   49 (191)
                      .+| |+++|+.++|||||+.+|+...  ....         ..       -|.... ......              ++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~-~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSCCCSS
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCC-EEEEEeccCcccccchhcccccc
Confidence            464 9999999999999999997321  1100         00       011100 111111              345


Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      .+.+.++||||+.++.......++.+|++++|+|+.+.-......-|.. ..    ..+.|.++++||+|...
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~----~~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-AL----GERIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HH----HTTCEEEEEEECHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HH----HcCCCeEEEEECccccc
Confidence            6779999999999999988888999999999999988544333333322 22    23789999999999743

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.48  E-value=4.7e-14  Score=98.05  Aligned_cols=109  Identities=17%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             EEEEEeCCChhhHHHHHHh---h--cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         52 LLDILDTAGQEEYSAMRDQ---Y--MRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.+.|+||+.+.......   .  ....+.++++.|...   +..+............   .-..|.++|+||+|+...
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeeccccccH
Confidence            4778999998865432111   1  224567888888754   3332222111111111   125799999999998752


Q ss_pred             ccCHH---------H---------------HHH---HHHH--cCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135        124 AVDMN---------Q---------------AQE---LAEQ--FNIPFIKTSAKTRMGVDDAFYTLVREI  163 (191)
Q Consensus       124 ~~~~~---------~---------------~~~---~~~~--~~~~~~~~s~~~~~~v~~l~~~i~~~~  163 (191)
                      +....         .               ...   ....  ..++++++||++|+|++++++.|.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            10000         0               000   0011  247899999999999999999987753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=9.5e-14  Score=100.05  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH
Q psy11135         53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE  132 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  132 (191)
                      +.+++|.|.....   ..+...+|.++++.+....+.....+..+   ..      .+=++|+||+|............+
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi---~e------~aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGL---ME------VADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHH---HH------HCSEEEECCCCTTCHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhh---hc------cccEEEEEeecccchHHHHHHHHH
Confidence            4455665532221   23455688888888765544333222322   22      234899999998752221112222


Q ss_pred             HHH----------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        133 LAE----------QFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       133 ~~~----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      +..          .+..+++.+||.+|.|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            211          23457999999999999999999876553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.47  E-value=2.2e-13  Score=98.05  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-
Q psy11135         52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-  130 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-  130 (191)
                      .+.+++|.|.-...   .....-+|..+++......+.....+.-+   ..      .+=++|+||+|+.......... 
T Consensus       145 d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gi---lE------~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         145 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---FE------LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---HH------HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhH---hh------hhheeeEeccccccchHHHHHHH
Confidence            46677777743322   22344589999999988765443322222   12      2449999999987633222222 


Q ss_pred             HHHHH----------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135        131 QELAE----------QFNIPFIKTSAKTRMGVDDAFYTLVREIK  164 (191)
Q Consensus       131 ~~~~~----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~  164 (191)
                      ..+..          .+..+++.+|+.++.|+++++++|.+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            22222          14568999999999999999999977654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.31  E-value=3.9e-11  Score=84.80  Aligned_cols=82  Identities=20%  Similarity=0.216  Sum_probs=53.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCe------------E---EEEEEEeCCChhhHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------------T---ALLDILDTAGQEEYSA   66 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~D~~g~~~~~~   66 (191)
                      .+||.++|.|+||||||++++++... ...|+.++-+.......+++.            .   ..+.++|+||.-.-++
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            57999999999999999999998773 455665554322222333322            1   2478999999543332


Q ss_pred             ----HH---HhhcccCCEEEEEEeC
Q psy11135         67 ----MR---DQYMRTGEGFLLVFAV   84 (191)
Q Consensus        67 ----~~---~~~~~~~~~~i~v~d~   84 (191)
                          +.   -..++.+|+++.|+|.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                22   2236789999999976

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.29  E-value=8.1e-11  Score=83.84  Aligned_cols=84  Identities=21%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEYS   65 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~   65 (191)
                      .+||.++|.|+||||||++++++..  ...+|+.||-+.......+.+.               ...+.+.|+||...-.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            6899999999999999999999765  3567777765433333444432               2358899999844211


Q ss_pred             -------HHHHhhcccCCEEEEEEeCCC
Q psy11135         66 -------AMRDQYMRTGEGFLLVFAVNS   86 (191)
Q Consensus        66 -------~~~~~~~~~~~~~i~v~d~~~   86 (191)
                             ...-..++.+|++++|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence                   122333788999999998855

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=7.5e-11  Score=84.15  Aligned_cols=114  Identities=20%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc------------------------------------
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID------------------------------------   47 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------------   47 (191)
                      +|+|+|..++|||||+|+|++..+ +....+++.......+...                                    
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN  107 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCC
Confidence            689999999999999999999884 5555554432211111100                                    


Q ss_pred             --------------CeEEEEEEEeCCChhh-------------HHHHHHhhcccCC-EEEEEEeCCChhhHHHHHHHHHH
Q psy11135         48 --------------GETALLDILDTAGQEE-------------YSAMRDQYMRTGE-GFLLVFAVNSMKSFEDIGSYREQ   99 (191)
Q Consensus        48 --------------~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~   99 (191)
                                    .....+.++|+||...             .......++...+ +++++.+.....+......+.+.
T Consensus       108 ~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~  187 (299)
T d2akab1         108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE  187 (299)
T ss_dssp             TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred             cCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHH
Confidence                          0011378999999421             2344556666665 45566666655444444455444


Q ss_pred             HHhhcCCCCCcEEEEEecCCCCC
Q psy11135        100 IKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus       100 ~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      +.    ....++++|+||+|...
T Consensus       188 ~~----~~~~r~i~Vltk~D~~~  206 (299)
T d2akab1         188 VD----PQGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HC----TTCSSEEEEEECGGGSC
T ss_pred             hC----cCCCceeeEEecccccc
Confidence            32    33568999999999876

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=3.1e-10  Score=81.14  Aligned_cols=114  Identities=20%  Similarity=0.260  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEE--------------------------------------
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVV--------------------------------------   45 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~--------------------------------------   45 (191)
                      +|+|+|..++|||||+|+|++.++ +....+++.......+.                                      
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  105 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRD  105 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHHH
Confidence            789999999999999999999884 44433333211111000                                      


Q ss_pred             -------------------E-cCeEEEEEEEeCCChhh-------------HHHHHHhhcccCCEEEEEE-eCCChhhHH
Q psy11135         46 -------------------I-DGETALLDILDTAGQEE-------------YSAMRDQYMRTGEGFLLVF-AVNSMKSFE   91 (191)
Q Consensus        46 -------------------~-~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~   91 (191)
                                         + ......+.++|+||...             .......++..++.+++++ +......-.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~  185 (306)
T d1jwyb_         106 TDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANS  185 (306)
T ss_dssp             CC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTC
T ss_pred             HHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccccc
Confidence                               0 00011477999999432             2245667788888766655 443322222


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135         92 DIGSYREQIKRVKDAEEVPMVLVGNKCDLST  122 (191)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (191)
                      ....+.+.+    .....++++|+||+|...
T Consensus       186 ~~~~~~~~~----~~~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         186 DALQLAKEV----DPEGKRTIGVITKLDLMD  212 (306)
T ss_dssp             SHHHHHHHH----CSSCSSEEEEEECTTSSC
T ss_pred             HHHHHHHHh----CcCCCeEEEEEecccccc
Confidence            233333333    223568999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=3.4e-10  Score=81.43  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=43.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccce-EEEEE---E------------------EcCeEEEEEEEeCCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDS-YRKQV---V------------------IDGETALLDILDTAG   60 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~-~~~~~---~------------------~~~~~~~~~~~D~~g   60 (191)
                      ++|+++|.|+||||||+|+|++.. ...+|+.||-+. .....   .                  .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            489999999999999999999876 345565554321 11111   0                  011235689999999


Q ss_pred             hhhHH----HHHHhh---cccCCEEEEEEeCCC
Q psy11135         61 QEEYS----AMRDQY---MRTGEGFLLVFAVNS   86 (191)
Q Consensus        61 ~~~~~----~~~~~~---~~~~~~~i~v~d~~~   86 (191)
                      .....    .....+   ++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            64322    223333   457899999999853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=4.5e-09  Score=73.79  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=35.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      ..++|+|+|.|+||||||+|+|.+.+..  ...+++|.....  . ..+..  +.++||||..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i-~~~~~--~~l~DTPGi~  168 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--V-KVGKE--LELLDTPGIL  168 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--E-EETTT--EEEEECCCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--E-ECCCC--eEEecCCCcc
Confidence            3689999999999999999999988743  333333332211  1 22333  7889999943

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=1.2e-08  Score=68.83  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCc------cCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV-DEY------DPTIEDSYRKQVVIDGETALLDILDTAGQEE   63 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   63 (191)
                      ..+++|++|||||||+|+|.+.... ...      .+...+.....+..++..   .++||||..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~  159 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFAN  159 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccc
Confidence            4689999999999999999876522 111      111112222233454443   4799999543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=7.4e-07  Score=60.30  Aligned_cols=94  Identities=9%  Similarity=0.091  Sum_probs=50.1

Q ss_pred             EEEEeCCChhhHHHHHHhh--------cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135         53 LDILDTAGQEEYSAMRDQY--------MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA  124 (191)
Q Consensus        53 ~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (191)
                      ..++.+.|..........+        .-..++++.+.|+.+.................      .=++|+||+|+... 
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~-  164 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGE-  164 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSC-
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccH-
Confidence            3567777755433332211        11357788899998754322221212111121      23799999999752 


Q ss_pred             cCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHH
Q psy11135        125 VDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAF  156 (191)
Q Consensus       125 ~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~  156 (191)
                        .+..++..+.++  +++++++ .-...++.++
T Consensus       165 --~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 --AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             --THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             --HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence              244555555555  5677654 3344555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=1.8e-08  Score=68.24  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ..+++|++|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45799999999999999998764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.44  E-value=1.7e-06  Score=56.07  Aligned_cols=23  Identities=30%  Similarity=0.728  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.39  E-value=4.3e-06  Score=55.77  Aligned_cols=91  Identities=14%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             EEEEEeCCChhhHH------HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135         52 LLDILDTAGQEEYS------AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW  123 (191)
Q Consensus        52 ~~~~~D~~g~~~~~------~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (191)
                      .+.++||+|...++      .....+  ....+-+++|.+++....  .+......... .    .+--++.||.|... 
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~-~----~~~~lI~TKlDet~-  167 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA-S----KIGTIIITKMDGTA-  167 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH-C----TTEEEEEECTTSCS-
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc-c----CcceEEEecccCCC-
Confidence            47889999943211      111111  123566778888866432  22222222222 1    13357799999864 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135        124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                        ..-.+-......+.|+.+++  .|+++++
T Consensus       168 --~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 --KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             --CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             --cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence              55666777888999988887  4666654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=1.3e-06  Score=58.34  Aligned_cols=91  Identities=16%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             EEEEEeCCChhhHHH----HHHhh---cc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         52 LLDILDTAGQEEYSA----MRDQY---MR-----TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~----~~~~~---~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .+.++||+|....+.    ....+   ..     ..+-.++|.+.+...  +.+..........     -+--++.||.|
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~-----~~~~lI~TKlD  167 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV-----NVTGIILTKLD  167 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS-----CCCEEEEECGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc-----CCceEEEeccc
Confidence            478999999332211    11111   11     146678888886632  2333333333321     24578999999


Q ss_pred             CCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135        120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      ...   ..-.+-..+...+.|+.+++  .|+++++
T Consensus       168 e~~---~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         168 GTA---KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GCS---CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC---cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            754   33455667788899988887  4666644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.3e-06  Score=58.78  Aligned_cols=84  Identities=31%  Similarity=0.324  Sum_probs=59.4

Q ss_pred             hcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH--cCCCEEEeccC
Q psy11135         71 YMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ--FNIPFIKTSAK  147 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~s~~  147 (191)
                      ..++.|.+++|+++.+|+ +...+..++.....    .+++.+||+||+|+.+.. ..+....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHH-HHHHHHHhhcccccceeEEEeccc
Confidence            467899999999998754 45555655544444    478999999999997522 12223333332  34789999999


Q ss_pred             CCCCHHHHHHHH
Q psy11135        148 TRMGVDDAFYTL  159 (191)
Q Consensus       148 ~~~~v~~l~~~i  159 (191)
                      ++.|++++...+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999988765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=1.7e-06  Score=60.28  Aligned_cols=95  Identities=15%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEecc
Q psy11135         67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSA  146 (191)
Q Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~  146 (191)
                      .....+..+|+++.|.|+.++-+...  ..+..+.     .+.|.++|+||+|+.+.... +...++....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~-~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVT-QQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHH-HHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHH-HHHHHHHHhcCCccceeec
Confidence            34556889999999999988655321  2222222     25799999999999864322 2233344555788999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy11135        147 KTRMGVDDAFYTLVREIKKDKML  169 (191)
Q Consensus       147 ~~~~~v~~l~~~i~~~~~~~~~~  169 (191)
                      .++.+...+...+.+.+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhhhh
Confidence            99999999988887777654443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=4.3e-07  Score=60.65  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             EEEEEeCCChhhHHH----HHHh---hcc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135         52 LLDILDTAGQEEYSA----MRDQ---YMR-----TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD  119 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~----~~~~---~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  119 (191)
                      .+.++||+|....+.    ....   ...     ..+-.++|.|.+....  .+..........     -+--++.||.|
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~--~~~~~~~~~~~~-----~~~~lIlTKlD  165 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAV-----GLTGITLTKLD  165 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH--HHHHHHHHHHHS-----CCCEEEEECCT
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc--hHHHHhhhhhcc-----CCceEEEeecC
Confidence            478899999332211    1111   121     2457778888865321  222222222221     24578899999


Q ss_pred             CCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135        120 LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD  154 (191)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  154 (191)
                      ...   ..-.+-..+...+.|+.+++  .|+++++
T Consensus       166 e~~---~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTA---KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCT---TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC---CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            864   33455667788899988887  5666644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=3e-07  Score=62.14  Aligned_cols=85  Identities=15%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             hcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH---HHHHHHcCCCEEEecc
Q psy11135         71 YMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA---QELAEQFNIPFIKTSA  146 (191)
Q Consensus        71 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~s~  146 (191)
                      ..++.|.+++|+++.+|+ ++..+..++....    ..+++.+||+||+|+.......+..   .+.....|++++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            357899999999987754 4555555554443    3478999999999998643333333   3345567899999999


Q ss_pred             CCCCCHHHHHHHH
Q psy11135        147 KTRMGVDDAFYTL  159 (191)
Q Consensus       147 ~~~~~v~~l~~~i  159 (191)
                      .++.|++++.+.+
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999888776543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=1.5e-06  Score=57.84  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             EEEEEeCCChhhHHH----HHHhh--------cccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135         52 LLDILDTAGQEEYSA----MRDQY--------MRTGEGFLLVFAVNSM-KSFEDIGSYREQIKRVKDAEEVPMVLVGNKC  118 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~----~~~~~--------~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  118 (191)
                      .+.++||+|....+.    ....+        ....+-.++|.|.+.. +....+....   ...     .+--++.||.
T Consensus        90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~~-----~~~~lI~TKl  161 (207)
T d1okkd2          90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFH---EAV-----GLTGVIVTKL  161 (207)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHH---HHH-----CCSEEEEECT
T ss_pred             CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhh---hcc-----CCceEEEecc
Confidence            478899999432211    11111        1234667788888664 3333333322   221     1336799999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135        119 DLSTWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       119 D~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      |...   ..-.+-..+...+.|+.+++
T Consensus       162 Det~---~~G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         162 DGTA---KGGVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             TSSC---CCTTHHHHHHHHCCCEEEEE
T ss_pred             CCCC---CccHHHHHHHHHCCCEEEEe
Confidence            9765   23345556778888887776

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.12  E-value=9.9e-07  Score=55.77  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+.+ |++.|++||||||++++|...
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence            7777 789999999999999998653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=9e-06  Score=54.07  Aligned_cols=84  Identities=18%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             EEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135         52 LLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV  125 (191)
Q Consensus        52 ~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  125 (191)
                      .+.++||+|....+.    .+..+  ....+-+++|.+.+....  .+ .....+.....    +-=+++||.|...   
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~-~~~~~f~~~~~----~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--AL-SVARAFDEKVG----VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HH-HHHHHHHHHTC----CCEEEEECGGGCS---
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HH-HHHHHHHhhCC----CCeeEEeecCccc---
Confidence            478899999332211    11111  234677888888866432  12 22222222211    3358899999754   


Q ss_pred             CHHHHHHHHHHcCCCEEEec
Q psy11135        126 DMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~s  145 (191)
                      ..-.+-.+....+.|+.+++
T Consensus       164 ~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             SCHHHHHHHHHHCCCEEEEC
T ss_pred             cchHHHHHHHHHCCCEEEEe
Confidence            33455667788888887765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.01  E-value=1.7e-06  Score=55.82  Aligned_cols=26  Identities=15%  Similarity=0.401  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++.++|+++|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.2e-06  Score=54.24  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |-++ |+|+|.+|||||||++++..
T Consensus         1 m~Pv-i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           1 MIPL-LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCCE-EEEECCTTSCHHHHHHHHHH
T ss_pred             CCCE-EEEEcCCCCCHHHHHHHHHH
Confidence            3444 78999999999999999975

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=2.3e-06  Score=55.76  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      =+|++.|++|+|||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.92  E-value=2.9e-06  Score=54.60  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |--.+|+++|++||||||+.+.|...
T Consensus         2 m~~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           2 MLLPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999999643

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.91  E-value=3.6e-06  Score=54.09  Aligned_cols=25  Identities=32%  Similarity=0.569  Sum_probs=21.1

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+.+ |++.|++||||||++++|...
T Consensus         1 M~kl-I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           1 MKKL-YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             CEEE-EEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeE-EEEECCCCCCHHHHHHHHHHH
Confidence            5554 789999999999999999754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.79  E-value=5.4e-06  Score=54.40  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++|+++|++||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.77  E-value=8.7e-06  Score=53.39  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+||+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.77  E-value=7.8e-06  Score=53.11  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +||+++|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.75  E-value=9.3e-06  Score=53.32  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +.++|+++|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=9.1e-06  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++|+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999999653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.73  E-value=1.1e-05  Score=54.20  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+.+.|++-|++||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=1e-05  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.606  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998644

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.72  E-value=1e-05  Score=52.62  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.3e-05  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +||+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.64  E-value=1.8e-05  Score=51.98  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +..|+++|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=3.5e-05  Score=53.56  Aligned_cols=58  Identities=21%  Similarity=0.127  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC----CCccCCccce-EEEEEEEcCeEEEEEEEeCCChh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDS-YRKQVVIDGETALLDILDTAGQE   62 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~   62 (191)
                      =|.++|+.++|||+|+|.+.+....    ....+++... .......++....+.++||.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            4789999999999999999986621    2222333222 22222223444457789999953

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.9e-05  Score=50.47  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |.++|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.7e-05  Score=50.32  Aligned_cols=22  Identities=41%  Similarity=0.610  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.8e-05  Score=50.99  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++.|+++|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.5e-05  Score=50.38  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .=|+++|.+||||||+++++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.2e-05  Score=50.26  Aligned_cols=21  Identities=43%  Similarity=0.605  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      +|+++|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999888853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=2.9e-05  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999974

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.4e-05  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4.7e-05  Score=49.33  Aligned_cols=25  Identities=40%  Similarity=0.651  Sum_probs=20.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+.+ |+++|++|+||+||+++|...
T Consensus         2 m~k~-ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           2 MRKT-LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCc-EEEECCCCCCHHHHHHHHHHh
Confidence            4444 788999999999999999854

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.44  E-value=4.9e-05  Score=48.83  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.3

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+-|.++|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999988864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=4.1e-05  Score=48.90  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++++|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999998653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.43  E-value=4.1e-05  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.9e-05  Score=52.13  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +|+++|+.|+|||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.42  E-value=4e-05  Score=49.57  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |++.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68889999999999998853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=9.5e-05  Score=52.47  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +|++.|++|+|||||++++...-
T Consensus       168 nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEeeccccchHHHHHHhhhc
Confidence            58999999999999999998644

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=5e-05  Score=49.52  Aligned_cols=21  Identities=38%  Similarity=0.676  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.39  E-value=5e-05  Score=48.68  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=5.2e-05  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+..
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCChHHHHHHHHhccc
Confidence            6799999999999999997754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=6.1e-05  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|+++|+|||||||+...|...
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=6.2e-05  Score=48.84  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+++|++||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=5.5e-05  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999997654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.3e-05  Score=50.48  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+-|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.33  E-value=8.2e-05  Score=47.59  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |..-=|++.|++||||||+.+.|...
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44445677799999999999999764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=8.6e-05  Score=50.00  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            6899999999999999997654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.31  E-value=9.1e-05  Score=50.34  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999997654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.8e-05  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            57999999999999999997755

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.28  E-value=8.1e-05  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCcchhhHhccCCC
Confidence            6899999999999999887654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.9e-05  Score=49.03  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      +++-|++.|+.|||||||.+.|..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=7.7e-05  Score=51.86  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .++++|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.28  E-value=7.7e-05  Score=47.82  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.27  E-value=8.9e-05  Score=50.97  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      --|++.|+||+|||||+.++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.27  E-value=8.1e-05  Score=48.76  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|+++|+|||||||+...|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=8.8e-05  Score=48.52  Aligned_cols=20  Identities=45%  Similarity=0.707  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=8.7e-05  Score=50.16  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998765

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.24  E-value=0.0066  Score=41.36  Aligned_cols=89  Identities=10%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             EEEEEEeCCChhhHHH-HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCHH
Q psy11135         51 ALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDMN  128 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~  128 (191)
                      +.+.++|+|+...... ........+|.++++... +..++.........+.......+.+ .-+|.|+.+...   ..+
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~---~~~  191 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN---EYE  191 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC---CHH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC---ccc
Confidence            4578899986432211 122223457777666655 4556666666666665544333433 347889887654   456


Q ss_pred             HHHHHHHHcCCCEEE
Q psy11135        129 QAQELAEQFNIPFIK  143 (191)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (191)
                      ..+.+++.++.+++.
T Consensus       192 ~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         192 LLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHTCCEEE
T ss_pred             hhhhhHhhcCCeEEE
Confidence            677788888877654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.23  E-value=9.5e-05  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.0001  Score=49.89  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|+||+||||+++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.21  E-value=0.00013  Score=47.52  Aligned_cols=23  Identities=35%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+=|++.|++|||||||.+.|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00012  Score=48.55  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+++||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00056  Score=42.99  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|++-|+-|+|||||++.+...-
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEecCCCccHHHHHHHHHhhc
Confidence            47889999999999999998654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.16  E-value=9.2e-05  Score=49.73  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      ++++|+.|||||||++.+.+-..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCcC
Confidence            68999999999999999988653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00013  Score=49.33  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.15  E-value=0.00016  Score=48.95  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      .+.++|+.|||||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            368999999999999999987653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.15  E-value=0.00013  Score=47.29  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=17.5

Q ss_pred             EEE-EEcCCCCCHHHHHHHHHh
Q psy11135          5 KLV-VVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~-v~G~~~~GKStli~~l~~   25 (191)
                      ||+ +.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999999853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00011  Score=49.68  Aligned_cols=22  Identities=36%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            6899999999999999997754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=9.5e-05  Score=49.92  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.12  E-value=0.00012  Score=49.63  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.09  E-value=7.3e-05  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|+.|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            68999999999999998886644

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.04  E-value=0.01  Score=40.80  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             EEEEEEeCCChhhHHHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEecCCCCCCccCHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGNKCDLSTWAVDMN  128 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~~  128 (191)
                      +.+.++|+|+........... ...++.++++. ..+..++..+......+.......+.++ -+|.|+.+...   ..+
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~-~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~---~~~  194 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVC-SGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR---EDE  194 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEE-CSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT---HHH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeeccc-chhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh---hHH
Confidence            456788887644222111111 23455555543 3444555566666655544333334444 47888876432   344


Q ss_pred             HHHHHHHHcCCCEEE
Q psy11135        129 QAQELAEQFNIPFIK  143 (191)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (191)
                      ...++++.++.+++.
T Consensus       195 ~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         195 LIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHcCCeEEE
Confidence            566778888877654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0002  Score=48.41  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      +.++|+.|+|||||++.+.+-..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57999999999999999987653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.01  E-value=0.00029  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.|++.|++|+|||++++++...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            45899999999999999999753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.00  E-value=0.00019  Score=49.20  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            36899999999999999998654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00027  Score=46.15  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      =+++++|++|+|||+++..+...-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            368999999999999999887544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.99  E-value=0.00017  Score=47.15  Aligned_cols=25  Identities=16%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++-|++-|..||||||+++.|...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4677999999999999999998643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.00022  Score=50.28  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -.++++||||||||.|++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35899999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=0.0002  Score=49.01  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            5899999999999999998765

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.00026  Score=47.55  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.94  E-value=0.00013  Score=49.30  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNHF   28 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~~   28 (191)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            368999999999999999988653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00027  Score=48.01  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .+++.|++|+||||+++++....
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999998643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00032  Score=48.20  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +++++|++|+|||+++..+...-
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            68999999999999999887554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00037  Score=47.45  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++.|++|+|||++++++.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999863

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00045  Score=44.89  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      ++-|++.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            577899999999999999988643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.79  E-value=0.00049  Score=45.52  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+-|.+.|.+|||||||.+.|..
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.77  E-value=0.023  Score=37.50  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccCHH
Q psy11135         50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVDMN  128 (191)
Q Consensus        50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~  128 (191)
                      .+.+.++|+++.....  ....+..+|.++++...+ ..++..+......+..    .+.|++ +|.|+.+.....+..+
T Consensus       111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred             cCCEEEEccccccccc--chhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence            3567889999865432  333466799998887764 4455555555554443    355655 8999998776555554


Q ss_pred             HHHHH
Q psy11135        129 QAQEL  133 (191)
Q Consensus       129 ~~~~~  133 (191)
                      ..+.+
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.77  E-value=0.00042  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00046  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |++.|++||||||+...|...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677799999999999998643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.75  E-value=0.00042  Score=47.43  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |+|.|++|+|||||++++..
T Consensus        32 i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          32 TLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            67889999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00051  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|++|+||||+++.+...
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00052  Score=46.93  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+|||++++.+...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00054  Score=45.72  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            3789999999999999988643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.0006  Score=44.81  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00056  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .|++.|++|+|||++++++....
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            58999999999999999997643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.63  E-value=0.00044  Score=49.01  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=24.0

Q ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          1 MAEYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         1 ~~~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |+-++|.|=|.-|+||||+++.|...-
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999997654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00062  Score=45.44  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.0005  Score=46.56  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .+++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.59  E-value=0.00038  Score=47.85  Aligned_cols=20  Identities=25%  Similarity=0.444  Sum_probs=17.0

Q ss_pred             EEEcCCCCCHHHHHHHHHhC
Q psy11135          7 VVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~~~   26 (191)
                      .+.|+||+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            45699999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.00058  Score=50.41  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      +|+++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999964

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00088  Score=46.94  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++=|++.|++|||||||.+.|..
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHH
Confidence            57899999999999999888753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00077  Score=46.30  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      -|++.|++|+|||+|++++...-
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcchhHHHHHHHHh
Confidence            58999999999999999997654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00093  Score=44.04  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0012  Score=43.44  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |-|+|+|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            558899999999999999886443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=43.50  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998887753

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.0023  Score=42.03  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .+-|++.|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999988753

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.22  E-value=0.071  Score=34.92  Aligned_cols=85  Identities=15%  Similarity=0.053  Sum_probs=47.6

Q ss_pred             EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135         51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA  130 (191)
Q Consensus        51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  130 (191)
                      +.+.++|+|+....  .....+..+|.++++...+. .++............. .  ..++-+|.|+.+...   .....
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~iv~N~~~~~~---~~~~~  180 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL-G--TKVLGVVVNRITTLG---IEMAK  180 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH-T--CEEEEEEEEEECTTT---HHHHH
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc-c--ccccccccccccccc---ccchh
Confidence            34678999885533  23334557888888877643 3444444443333332 1  123557889986432   22233


Q ss_pred             HHHHHHcCCCEEEe
Q psy11135        131 QELAEQFNIPFIKT  144 (191)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (191)
                      +.+.+.++.+++.+
T Consensus       181 ~~i~~~~~~~~~~~  194 (232)
T d1hyqa_         181 NEIEAILEAKVIGL  194 (232)
T ss_dssp             HHHHHHTTSCEEEE
T ss_pred             hhHHhhcCCeEEEE
Confidence            55667778776543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.20  E-value=0.0019  Score=41.33  Aligned_cols=24  Identities=33%  Similarity=0.650  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|++.|++|+||||+.-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999887654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0022  Score=44.34  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~   24 (191)
                      ++=|.+.|.+|||||||...+.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            5678999999999999987763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.001  Score=44.57  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      .|++-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.08  E-value=0.0016  Score=46.81  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      =+++++||+|||||.|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            3589999999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.0013  Score=47.57  Aligned_cols=22  Identities=41%  Similarity=0.619  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++++|++|||||+++..|...
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999766543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.02  E-value=0.0023  Score=40.94  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|++.|++|+||||+.-.+....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999887644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.01  E-value=0.0011  Score=46.92  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            378999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.00  E-value=0.0021  Score=46.07  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -+++.||||+|||+|..++.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.002  Score=43.19  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999999753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0025  Score=41.76  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +.+.|++|+|||+|...+....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999998887544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.89  E-value=0.0029  Score=44.74  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          3 EYKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         3 ~~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -++|.|=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            579999999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.86  E-value=0.0028  Score=41.89  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +.+.|++|+|||.|++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6789999999999999997654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.86  E-value=0.0028  Score=43.70  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -|.+.|..|+|||||+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.86  E-value=0.0031  Score=40.00  Aligned_cols=24  Identities=29%  Similarity=0.627  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      .-|++.|++|+||||+.-.+....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999998887654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.85  E-value=0.0031  Score=44.49  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|.|=|.-|+||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            4699999999999999999853

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.82  E-value=0.0013  Score=45.55  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~   24 (191)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0029  Score=41.82  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.73  E-value=0.0031  Score=45.83  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      |+|.|+.|+||||.+..+...-
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            7899999999999999998643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.003  Score=44.35  Aligned_cols=21  Identities=38%  Similarity=0.714  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .++++|++|+|||.|++.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            478999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.003  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++|.|++|+|||+|.-.+....
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999998886544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.00053  Score=44.65  Aligned_cols=18  Identities=28%  Similarity=0.553  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q psy11135          7 VVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         7 ~v~G~~~~GKStli~~l~   24 (191)
                      +++|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999985

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.0036  Score=42.06  Aligned_cols=22  Identities=32%  Similarity=0.279  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++|.|++|+|||+|.-.+....
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6799999999999988876544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.0026  Score=44.20  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~   24 (191)
                      +. +++|+.|+||||++.++.
T Consensus        26 ln-vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VT-AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EE-EEECCTTTCSTHHHHHHH
T ss_pred             eE-EEECCCCCcHHHHHHHHH
Confidence            44 588999999999999884

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.44  E-value=0.0047  Score=41.29  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      -+++.|++|+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678999999999999888654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0054  Score=40.26  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.39  E-value=0.0056  Score=42.97  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +++.|+||+|||.|.+++.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0059  Score=40.93  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      +++.|++|+|||+++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67899999999999998754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.18  E-value=0.0061  Score=40.64  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++|.|++|+|||+|...+...-
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999998886443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0057  Score=44.27  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=17.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy11135          4 YKLVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~   24 (191)
                      +. +++|+.|+|||+++.++.
T Consensus        27 l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EE-EEECSTTSSHHHHHHHHH
T ss_pred             EE-EEECCCCCCHHHHHHHHH
Confidence            44 588999999999999984

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0074  Score=40.43  Aligned_cols=22  Identities=23%  Similarity=0.197  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      ++|.|++|+|||+|...+....
T Consensus        40 ~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          40 TEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999998887543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.01  E-value=0.0061  Score=39.63  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -+++.|++++|||.|+.++..
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            478999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.99  E-value=0.0076  Score=40.27  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.84  E-value=0.0091  Score=40.76  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      +++.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999887753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.70  E-value=0.01  Score=39.23  Aligned_cols=19  Identities=37%  Similarity=0.740  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      +++.|++|+|||+|...+.
T Consensus        29 ~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5788999999999987654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.014  Score=39.63  Aligned_cols=19  Identities=47%  Similarity=0.693  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      +++.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.021  Score=33.74  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135          2 AEYKLVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         2 ~~~~i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +-|-|.+.|..|+|||++.++|...-
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999986443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.18  E-value=0.011  Score=41.11  Aligned_cols=15  Identities=27%  Similarity=0.640  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q psy11135          6 LVVVGAGGVGKSALT   20 (191)
Q Consensus         6 i~v~G~~~~GKStli   20 (191)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            678999999999764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.013  Score=40.95  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      .++++|++|+|||.+.+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            467889999999999998754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.10  E-value=0.018  Score=39.27  Aligned_cols=23  Identities=13%  Similarity=0.325  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~~   26 (191)
                      --+.+.|++++|||+|++.+..-
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            34678999999999999998753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.06  E-value=0.011  Score=40.83  Aligned_cols=15  Identities=27%  Similarity=0.545  Sum_probs=12.9

Q ss_pred             EEEEcCCCCCHHHHH
Q psy11135          6 LVVVGAGGVGKSALT   20 (191)
Q Consensus         6 i~v~G~~~~GKStli   20 (191)
                      ++|.|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578899999999763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.017  Score=42.03  Aligned_cols=20  Identities=50%  Similarity=0.619  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      ++|+|.+|+|||+++..+..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999877653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.026  Score=38.84  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      |++++|+.|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.027  Score=40.12  Aligned_cols=18  Identities=33%  Similarity=0.571  Sum_probs=15.0

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQL   23 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l   23 (191)
                      .++.|++|+|||+++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            468899999999987554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.15  Score=33.85  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5789999999999999874

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.034  Score=38.02  Aligned_cols=19  Identities=37%  Similarity=0.684  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTIQL   23 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l   23 (191)
                      -|++.|..|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            3578999999999976655

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.035  Score=37.72  Aligned_cols=18  Identities=33%  Similarity=0.883  Sum_probs=14.2

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQL   23 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l   23 (191)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455699999999986555

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.71  E-value=0.36  Score=32.59  Aligned_cols=20  Identities=15%  Similarity=0.474  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy11135          6 LVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~   25 (191)
                      +.+.|++|+|||+|.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46899999999999766653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.47  E-value=0.042  Score=36.90  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      .-|++.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3478999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.059  Score=36.51  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQNH   27 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~~   27 (191)
                      +.+.|++|+|||+|.-.+....
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5689999999999987766443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.067  Score=34.61  Aligned_cols=35  Identities=11%  Similarity=0.082  Sum_probs=23.0

Q ss_pred             CcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEe
Q psy11135        109 VPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKT  144 (191)
Q Consensus       109 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  144 (191)
                      ...-+|.|+.|... ....+..+.+.+.++++++-+
T Consensus       168 ~~~gvv~N~~~~~~-~~~~~~~~~l~~~~gi~vlG~  202 (224)
T d1byia_         168 TLAGWVANDVTPPG-KRHAEYMTTLTRMIPAPLLGE  202 (224)
T ss_dssp             CEEEEEEECCSSCC-TTHHHHHHHHHHHSSSCEEEE
T ss_pred             ccEEEEEeCcCCCc-hHHHHHHHHHHHHhCCCEEEE
Confidence            45678889887553 223344667777888887643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.17  E-value=0.073  Score=35.12  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy11135          6 LVVVGAGGVGKSALTIQLI   24 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~   24 (191)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            5799999999999999874

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.11  E-value=0.088  Score=35.86  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888644

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.92  E-value=0.11  Score=31.50  Aligned_cols=18  Identities=33%  Similarity=0.362  Sum_probs=14.3

Q ss_pred             EEEcCCCCCHHH-HHHHHH
Q psy11135          7 VVVGAGGVGKSA-LTIQLI   24 (191)
Q Consensus         7 ~v~G~~~~GKSt-li~~l~   24 (191)
                      +++|+-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            467999999999 566653

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=89.42  E-value=0.86  Score=28.35  Aligned_cols=55  Identities=13%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135         85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS  145 (191)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (191)
                      +|+.+++   ..+..+.......+.|+|+++.......   ..+++.++++..++|++.+.
T Consensus         3 sd~~~l~---~~v~~~~~~l~~AkrPvIi~G~g~~~~~---a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLN---AAVDETLKFIANRDKVAVLVGSKLRAAG---AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHH---HHHHHHHHHHTTCSCEEEEECTTTTTTT---CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHH---HHHHHHHHHHHcCCCEEEEECcCccccc---hHHHHHHHHHhhceeEEecc
Confidence            4444443   4444445545566889999999987643   68899999999999987543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.32  E-value=0.099  Score=31.19  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=17.0

Q ss_pred             eeEE-EEEcCCCCCHHHHHHHHHh
Q psy11135          3 EYKL-VVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         3 ~~~i-~v~G~~~~GKStli~~l~~   25 (191)
                      ++++ ++.++.|+|||+++-.+..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3444 6789999999998765543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.50  E-value=0.15  Score=32.82  Aligned_cols=22  Identities=9%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy11135          4 YKLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         4 ~~i~v~G~~~~GKStli~~l~~   25 (191)
                      -.+++.|++|+|||+++..+..
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.48  E-value=0.2  Score=33.92  Aligned_cols=21  Identities=19%  Similarity=0.438  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      +.+.|++++|||+|.-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            468899999999998777654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.34  E-value=0.15  Score=34.86  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQ   25 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~   25 (191)
                      |+.++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            678999999999999877654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.16  Score=35.04  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=12.6

Q ss_pred             EEEcCCCCCHHHHH
Q psy11135          7 VVVGAGGVGKSALT   20 (191)
Q Consensus         7 ~v~G~~~~GKStli   20 (191)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            58899999999974

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.62  E-value=0.18  Score=34.98  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=12.5

Q ss_pred             EEEcCCCCCHHHHH
Q psy11135          7 VVVGAGGVGKSALT   20 (191)
Q Consensus         7 ~v~G~~~~GKStli   20 (191)
                      ++.|.+|+|||||-
T Consensus        18 lffGLSGTGKTTLs   31 (318)
T d1j3ba1          18 VFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTSCHHHHT
T ss_pred             EEEccCCCCccccc
Confidence            68899999999974

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.88  E-value=0.3  Score=30.89  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy11135          6 LVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         6 i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.72  E-value=0.22  Score=34.51  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=12.7

Q ss_pred             EEEcCCCCCHHHHH
Q psy11135          7 VVVGAGGVGKSALT   20 (191)
Q Consensus         7 ~v~G~~~~GKStli   20 (191)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            58999999999985

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.37  E-value=0.29  Score=33.20  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy11135          5 KLVVVGAGGVGKSALTIQLIQN   26 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~~l~~~   26 (191)
                      |+.++|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6789999999999998765433

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.37  E-value=0.42  Score=30.24  Aligned_cols=17  Identities=24%  Similarity=0.526  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCCHHHHHH
Q psy11135          5 KLVVVGAGGVGKSALTI   21 (191)
Q Consensus         5 ~i~v~G~~~~GKStli~   21 (191)
                      ++++.++.|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46788999999997433

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.34  E-value=0.22  Score=29.32  Aligned_cols=15  Identities=27%  Similarity=0.195  Sum_probs=12.2

Q ss_pred             EEEEEcCCCCCHHHH
Q psy11135          5 KLVVVGAGGVGKSAL   19 (191)
Q Consensus         5 ~i~v~G~~~~GKStl   19 (191)
                      ++++.+++|+|||..
T Consensus         9 ~~il~~~tGsGKT~~   23 (140)
T d1yksa1           9 TTVLDFHPGAGKTRR   23 (140)
T ss_dssp             EEEECCCTTSSTTTT
T ss_pred             cEEEEcCCCCChhHH
Confidence            567788999999944