Psyllid ID: psy11141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MHSYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNYHLK
ccccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEEcccccccEEEEcccccHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccEEEccccccccccEEEEEEEcccccccccHHHHcccccccccHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHccccHHHHHHcc
cccHccccEEccccEEEEEccHcccccccEEEEEEEEccccccHHHHHHHHcHHHHHHHHHHHccccccccHHHHcccccccccccEEEEEcccccEEEEccccccccEEEEccccccEEEEEEcccccccEEEEccccccHHccccccHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccccccccccccccEEEccccccccccEEEEEEEccccccccccccccccHccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEccccccEEEccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccEEEEEEccccccEEcccccHHHccccccccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccEEEEEEccccccccccccccccccccccEEEEccHcccHccEEEEEEEEccccccccccEEEHHHccccEEcEccc
mhsylsekikipklswfyWDKKLNKESKKYYIEVAYtfdagpnaCLYVLENTVPLLLSTLVqyfppssgisapyirgleylnilppvqvklsnndiitlkselngiepieITFQRMhaktsvalspdftedklWLNGKKLAEQEKSSREMADWKMHicsennfptaaglassaaGYSCLVFTLAYALglntsevshiarqgsgsacrsmfggfvrwktlpegqqsdgngdigrkqCELSNAEQIISESYWGSMRVIILVVNdqakstsstdgmqrtTLTSTLYEHrvntivpsrcsgmeealrardfprfaeltmkdsnqfhaccldtyppivymndtsHSIVRFVHEFNTVVGETKvaytfdagpnaCLYVLENTVPLLLSTLVqyfppssgisapyirgleylnilppvqlpsftpqpaGLLQYLISTkigsgpkilddipnnhllneagapkHLMFTLAYALGLNTSEVSHIArqgsgsacrsmfggfvrwktlpegqqsegngdigrkQFELSNAEQIISESYWGSMRVIILVHLeyvprvsndttilfkklgvprlnyhlk
mhsylsekikipklswfywDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTsvalspdftedkLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTlpegqqsdgngdIGRKQCELSNAEQIISESYWGSMRVIILVVNDqakstsstdgmqrttltstlyehrvntivpsrcsgmeEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVSndttilfkklgvprlnyhlk
MHSYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTaaglassaagYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNYHLK
*******KIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNG**************DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTL****************CELSNAEQIISESYWGSMRVIILVVND***************LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTL******************LSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNY***
********IKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPE******N*DIGRKQCELSNAEQIISESYWGSMRVIILVV*****************LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNI**P****SFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEG*******DIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVP********LFKKLGVPRLNYHLK
MHSYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQ**********QRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNYHLK
***YLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLP*********DI****CELSNAEQIISESYWGSMRVIILVVNDQ*************TLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPE**************FELSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNYHLK
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MHSYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLGVPRLNYHLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
Q99JF5401 Diphosphomevalonate decar yes N/A 0.575 0.812 0.445 2e-79
Q5U403400 Diphosphomevalonate decar yes N/A 0.574 0.812 0.460 3e-79
Q62967401 Diphosphomevalonate decar yes N/A 0.574 0.810 0.449 2e-78
P53602400 Diphosphomevalonate decar yes N/A 0.575 0.815 0.445 3e-75
Q54YQ9391 Diphosphomevalonate decar yes N/A 0.614 0.890 0.421 5e-75
Q0P570400 Diphosphomevalonate decar yes N/A 0.575 0.815 0.437 1e-74
Q6BY07388 Diphosphomevalonate decar yes N/A 0.581 0.847 0.401 7e-65
Q751D8397 Diphosphomevalonate decar yes N/A 0.542 0.773 0.425 1e-63
P32377396 Diphosphomevalonate decar yes N/A 0.537 0.767 0.429 2e-61
O13963393 Diphosphomevalonate decar yes N/A 0.565 0.814 0.397 3e-61
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function desciption
 Score =  296 bits (759), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/368 (44%), Positives = 235/368 (63%), Gaps = 42/368 (11%)

Query: 115 RMHAKTSVALSPDFTEDKLWLNGK-----------------KLAEQEKSSRE------MA 151
           ++   T+VA+S DFTED++WLNG+                 +LA + +S+ +        
Sbjct: 48  QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 107

Query: 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFG 211
            +K+H+ S NNFPTAAGLASSAAGY+CL +TLA   G+   ++S +AR+GSGSACRS++G
Sbjct: 108 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE-GDLSEVARRGSGSACRSLYG 166

Query: 212 GFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTD 271
           GFV W+    G+Q+DG   I R         QI  E +W  +R++ILVV+   K T ST 
Sbjct: 167 GFVEWQM---GEQADGKDSIAR---------QIAPEWHWPQLRILILVVSADKKQTGSTV 214

Query: 272 GMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331
           GMQ +  TSTL + R  ++VP R   M   ++ +DF  FA+LTMKDSNQFHA CLDT+PP
Sbjct: 215 GMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPP 274

Query: 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPS 391
           I Y+NDTS  I++ VH FNT  G+TKVAYTFDAGPNA ++ LE+TV   ++ +   FPP+
Sbjct: 275 ISYLNDTSRRIIQLVHRFNTHQGQTKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPA 334

Query: 392 SGISAPYIRGLEYLNILPPVQLP---SFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLL 448
           +     +++GL+   +L   +L    +  P P G +QY+I+T++G GP++LDD  ++HLL
Sbjct: 335 AN-GDKFLKGLQVAPVLLSDELKAALAVEPSPGG-VQYIIATQVGPGPQVLDDT-HDHLL 391

Query: 449 NEAGAPKH 456
            + G P+ 
Sbjct: 392 GQDGLPQR 399
Performs the first committed step in the biosynthesis of isoprenes.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function description
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
328790375386 PREDICTED: diphosphomevalonate decarboxy 0.575 0.844 0.486 7e-86
380019510386 PREDICTED: diphosphomevalonate decarboxy 0.575 0.844 0.477 1e-83
307179520373 Diphosphomevalonate decarboxylase [Campo 0.583 0.884 0.484 3e-82
350396871446 PREDICTED: diphosphomevalonate decarboxy 0.572 0.726 0.485 8e-82
443705326398 hypothetical protein CAPTEDRAFT_176844 [ 0.570 0.811 0.469 2e-81
157104385372 diphosphomevalonate decarboxylase [Aedes 0.574 0.873 0.456 2e-81
385258412384 diphosphomevalonate decarboxylase [Bombu 0.575 0.848 0.477 1e-80
340716987384 PREDICTED: diphosphomevalonate decarboxy 0.575 0.848 0.477 2e-80
326910927386 diphosphomevalonate decarboxylase [Acyrt 0.590 0.865 0.463 4e-80
291230240405 PREDICTED: diphosphomevalonate decarboxy 0.565 0.790 0.458 2e-79
>gi|328790375|ref|XP_001121619.2| PREDICTED: diphosphomevalonate decarboxylase-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 223/358 (62%), Gaps = 32/358 (8%)

Query: 118 AKTSVALSPDFTEDKLWLNGKK-----------LAEQEK---SSREMADWKMHICSENNF 163
           AKT+V +SP+F  D++WLNG++           L E +K    S  M  WK+HICSENNF
Sbjct: 44  AKTTVMISPNFKHDRIWLNGREEDIMNIRLQNCLTEIKKRAGDSNHMDQWKIHICSENNF 103

Query: 164 PTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQ 223
           PT+AGLASSAAGY+CLV  LA    +   +++ IAR GSGSACRS+ GGFVRW     G 
Sbjct: 104 PTSAGLASSAAGYACLVIALAKLYEVK-GDITAIARVGSGSACRSILGGFVRWYM---GS 159

Query: 224 QSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLY 283
           Q+DG   I         A+QI+  SYW  MR++ILVVN+  K+ SS  GM+R   TS   
Sbjct: 160 QTDGTDSI---------AKQIVPASYWPEMRILILVVNEAKKNVSSAIGMKRGMETSDFL 210

Query: 284 EHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIV 343
             RV  IVP R   +E+A+  +DF  FAE TMKDSNQ HA CLDTYPP VYMND SH+IV
Sbjct: 211 NFRVKHIVPDRVKSIEQAILQKDFKTFAEHTMKDSNQMHAACLDTYPPCVYMNDISHAIV 270

Query: 344 RFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLE 403
             +H +N  V E KVAYTFDAGPNA LY+LE  V   L  L  +FP ++ +   YI+GL 
Sbjct: 271 DLIHAYNETVKEVKVAYTFDAGPNATLYLLEENVTEFLGVLDYFFPTTTNLE-EYIKGLP 329

Query: 404 YLNILPPVQL---PSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLNEAGAPKHLM 458
              ++  ++L    +   Q  G  +Y+I TKI  GPK L+D   +HLLN+ G P +L+
Sbjct: 330 VKKVVHSLELFNNINIRKQAPGCFKYIIYTKISDGPKYLND-SKDHLLNKEGLPINLI 386

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380019510|ref|XP_003693647.1| PREDICTED: diphosphomevalonate decarboxylase-like [Apis florea] Back     alignment and taxonomy information
>gi|307179520|gb|EFN67834.1| Diphosphomevalonate decarboxylase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350396871|ref|XP_003484695.1| PREDICTED: diphosphomevalonate decarboxylase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|443705326|gb|ELU01936.1| hypothetical protein CAPTEDRAFT_176844 [Capitella teleta] Back     alignment and taxonomy information
>gi|157104385|ref|XP_001648384.1| diphosphomevalonate decarboxylase [Aedes aegypti] gi|108880368|gb|EAT44593.1| AAEL004050-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|385258412|gb|AFI55102.1| diphosphomevalonate decarboxylase [Bombus terrestris] Back     alignment and taxonomy information
>gi|340716987|ref|XP_003396971.1| PREDICTED: diphosphomevalonate decarboxylase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|326910927|ref|NP_001192100.1| diphosphomevalonate decarboxylase [Acyrthosiphon pisum] gi|328705024|ref|XP_003242673.1| PREDICTED: diphosphomevalonate decarboxylase [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|291230240|ref|XP_002735076.1| PREDICTED: diphosphomevalonate decarboxylase-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
ZFIN|ZDB-GENE-041114-127400 zgc:100824 "zgc:100824" [Danio 0.584 0.827 0.435 3.6e-73
MGI|MGI:2179327401 Mvd "mevalonate (diphospho) de 0.595 0.840 0.408 4.1e-72
RGD|621292401 Mvd "mevalonate (diphospho) de 0.591 0.835 0.420 6.7e-72
UNIPROTKB|Q642E5401 Mvd "Mevalonate (Diphospho) de 0.597 0.842 0.412 8.6e-72
FB|FBgn0030683388 CG8239 [Drosophila melanogaste 0.567 0.827 0.442 8.9e-70
UNIPROTKB|E2QYJ9400 MVD "Uncharacterized protein" 0.597 0.845 0.412 1.1e-69
UNIPROTKB|P53602400 MVD "Diphosphomevalonate decar 0.595 0.842 0.408 3.8e-69
UNIPROTKB|Q0P570400 MVD "Diphosphomevalonate decar 0.595 0.842 0.401 1e-68
DICTYBASE|DDB_G0278607391 mvd "diphosphomevalonate decar 0.613 0.887 0.410 3.2e-65
TAIR|locus:2080265419 AT3G54250 [Arabidopsis thalian 0.461 0.622 0.441 1.1e-62
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 162/372 (43%), Positives = 221/372 (59%)

Query:   109 IEITFQRMHAKTS--VALSPDFTEDKLWLNGK-----------------KLAEQEKSSRE 149
             + +T  + H +T+  +A S  F +D +WLNGK                 +LA++ K++ +
Sbjct:    41 LSVTLHQDHLRTTTTIACSRSFHKDCIWLNGKEQDISHPRLQSCLLEIRRLAQRRKNTGD 100

Query:   150 MADW---KMHICSENNFPTXXXXXXXXXXYSCLVFTLAYALGLNTSEVSHIARQGSGSAC 206
              A     K+HICS NNFPT          Y+CLV+TL+    +   E+S +ARQGSGSAC
Sbjct:   101 PASDVSNKVHICSVNNFPTAAGLASSAAGYACLVYTLSQLFNVE-GELSGVARQGSGSAC 159

Query:   207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKS 266
             RS++GGFV+WK    G+QSDG   I         AEQ+ SE YW  +RV+ILVV+ + KS
Sbjct:   160 RSLYGGFVQWKL---GEQSDGKDSI---------AEQVASELYWPELRVLILVVSAEQKS 207

Query:   267 TSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCL 326
               ST GM  +  TS L ++R + +VP R   M  A+R RDFP+F ELTMKDSNQFHA CL
Sbjct:   208 VGSTSGMHTSVETSHLLKYRADAVVPGRMEEMIRAIRLRDFPKFGELTMKDSNQFHAICL 267

Query:   327 DTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQ 386
             DTYPPI Y+N+ SH I+  VH +N   GET+VAYTFDAGPNA +Y L++ +P  +  +  
Sbjct:   268 DTYPPIFYLNNISHQIISLVHRYNQYYGETRVAYTFDAGPNAVIYSLQDYLPEFVEVVRH 327

Query:   387 YFPPSSGISAPYIRGLEYLNI-LPPVQLPSFT--PQPAGLLQYLISTKIGSGPKILDDIP 443
             +FPP       + +GL      L    +      P P G+ +Y+ISTK G GP++++D P
Sbjct:   328 FFPPEVN-EEEFFKGLPVCPADLSEEMIRDINMKPTPNGI-RYMISTKAGPGPRVVED-P 384

Query:   444 NNHLLNEAGAPK 455
             N HLL   G PK
Sbjct:   385 NLHLLGADGLPK 396
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0000166 "nucleotide binding" evidence=IEA
GO:0006694 "steroid biosynthetic process" evidence=IEA
GO:0008203 "cholesterol metabolic process" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=IEA
GO:0006695 "cholesterol biosynthetic process" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008202 "steroid metabolic process" evidence=IEA
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0030683 CG8239 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278607 mvd "diphosphomevalonate decarboxylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54YQ9MVD1_DICDI4, ., 1, ., 1, ., 3, 30.42150.61480.8900yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.737
3rd Layer4.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 1e-112
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 3e-71
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 2e-70
PLN02407 343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 2e-14
COG3407 329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 2e-10
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 7e-10
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 6e-08
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 6e-07
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  337 bits (866), Expect = e-112
 Identities = 149/316 (47%), Positives = 191/316 (60%), Gaps = 43/316 (13%)

Query: 109 IEITFQRMH--AKTSVALSPDFTEDKLWLNGKKLA--------------------EQEKS 146
           I +T    H  A T+VA+SP F +D+LWLNGK+++                    E E+ 
Sbjct: 33  ISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREIRARATDVEDEEK 92

Query: 147 SREMA--DWK---MHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNT---SEVSHIA 198
             ++   DW+   +HI S NNFPTAAGLASSAAG++CLVF LA  + +      E+S IA
Sbjct: 93  GIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIA 152

Query: 199 RQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIIL 258
           RQGSGSACRS++GGFV+W     G++ DG+  I         A Q+  E +W  + +II 
Sbjct: 153 RQGSGSACRSLYGGFVKWNM---GKKEDGSDSI---------AVQLADEKHWDDLVIIIA 200

Query: 259 VVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDS 318
           VV+ + K TSST GM+ +  TS L +HR   +VP R   MEEA++ RDF  FA+LT  DS
Sbjct: 201 VVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQMEEAIKNRDFASFAKLTCADS 260

Query: 319 NQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVP 378
           NQFHA CLDT PPI YMNDTS  I+  V ++N   G  +VAYTFDAGPNA L  L   V 
Sbjct: 261 NQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALNRKVA 320

Query: 379 L-LLSTLVQYFPPSSG 393
             LL  L+ YFPPSS 
Sbjct: 321 AQLLQRLLYYFPPSSD 336

Length = 343
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
KOG2833|consensus395 100.0
PLN02407343 diphosphomevalonate decarboxylase 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 100.0
PTZ00299336 homoserine kinase; Provisional 99.97
PRK01212301 homoserine kinase; Provisional 99.95
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.95
PLN02451370 homoserine kinase 99.93
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.89
KOG2833|consensus 395 99.89
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.86
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.86
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.83
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.83
PLN02407 343 diphosphomevalonate decarboxylase 99.83
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.82
PRK03926302 mevalonate kinase; Provisional 99.81
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.8
PTZ00298328 mevalonate kinase; Provisional 99.8
PRK01123282 shikimate kinase; Provisional 99.8
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.79
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.77
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.76
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.72
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.72
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.72
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.71
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.7
PRK03817351 galactokinase; Provisional 99.69
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.66
PRK05322387 galactokinase; Provisional 99.65
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.65
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.65
KOG1537|consensus355 99.65
PRK00555363 galactokinase; Provisional 99.64
COG3407 329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 99.62
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.59
PRK05905258 hypothetical protein; Provisional 99.58
PRK05101382 galactokinase; Provisional 99.55
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.54
PLN02677387 mevalonate kinase 99.49
COG2605333 Predicted kinase related to galactokinase and meva 99.38
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.37
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.27
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.27
PLN02521497 galactokinase 99.25
COG1907312 Predicted archaeal sugar kinases [General function 99.25
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.22
PLN02865423 galactokinase 99.11
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.01
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 98.95
PTZ00290468 galactokinase; Provisional 98.8
KOG1511|consensus397 98.78
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.54
COG4542293 PduX Protein involved in propanediol utilization, 98.07
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 94.4
KOG4644|consensus948 93.25
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 89.69
>KOG2833|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.5e-85  Score=659.35  Aligned_cols=360  Identities=48%  Similarity=0.780  Sum_probs=319.6

Q ss_pred             CCCc-ceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh--h--
Q psy11141         70 ISAP-YIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ--E--  144 (566)
Q Consensus        70 ~~~~-~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~--~--  144 (566)
                      .+|| |||+||||||           ||+.||||.|||||+||++|+|+|.||+..++++++|++||||++++..  +  
T Consensus        10 ~taPvNIAvIKYWGK-----------RD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q   78 (395)
T KOG2833|consen   10 ATAPVNIAVIKYWGK-----------RDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQ   78 (395)
T ss_pred             eeccceeeeeeeccc-----------cchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHH
Confidence            3678 9999999986           9999999999999999999999999999999999999999999873221  1  


Q ss_pred             -------hh----------hhccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCc
Q psy11141        145 -------KS----------SREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSA  205 (566)
Q Consensus       145 -------~~----------l~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSa  205 (566)
                             +.          ++....+++||.|+||||++||||||||++||+++|++++|+++  .+||+++||+|||||
T Consensus        79 ~cl~e~r~~~~d~~~~~~~~~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGSA  158 (395)
T KOG2833|consen   79 RCLREIRRLARDREESEASLPSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGSA  158 (395)
T ss_pred             HHHHHHHHHhhhhhhhhcccCcCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCchh
Confidence                   00          01222468999999999999999999999999999999999999  899999999999999


Q ss_pred             hhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHH
Q psy11141        206 CRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEH  285 (566)
Q Consensus       206 arSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~  285 (566)
                      |||+|||||.|++   |..+||.|         |.++++.+..|||+++++++|++..+|+++||++||++++||.++++
T Consensus       159 CRSl~GG~V~W~m---G~~~DGsD---------svAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qh  226 (395)
T KOG2833|consen  159 CRSLYGGFVAWEM---GELDDGSD---------SVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQH  226 (395)
T ss_pred             hhhhhcceeEeec---ccccCCCc---------eeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHH
Confidence            9999999999999   99999988         89999998899999999999999999999999999999999999999


Q ss_pred             HHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCC
Q psy11141        286 RVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAG  365 (566)
Q Consensus       286 ~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAG  365 (566)
                      |++++++.|+..|.+||.++||+.|++++|.|+|+||++|++++|||.||++.+++||++||++|+..|...++||||||
T Consensus       227 Ri~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAG  306 (395)
T KOG2833|consen  227 RIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAG  306 (395)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999877889999999999


Q ss_pred             cceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCC--CCCCCCccEEEEccCCCCcEEcCCCC
Q psy11141        366 PNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFT--PQPAGLLQYLISTKIGSGPKILDDIP  443 (566)
Q Consensus       366 PnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ii~t~vG~Gp~~~~~~~  443 (566)
                      ||.++|+.+++..++++.+.+.|+...++...|.+|.-..-.+....- .+.  +.-.+.++|||+|+||+||+ +.+ .
T Consensus       307 PNAvl~~l~e~~~~~l~~~~~~f~~~p~~dk~y~~~~~~~~~~~~~~~-~~~~~l~~~~~vs~~I~t~vG~GP~-l~~-~  383 (395)
T KOG2833|consen  307 PNAVLIVLEENVSQLLAAVLKVFPPVPGWDKTYGKGLLEQFKVAAESS-SIKDSLGSQGGVSYIILTRVGGGPK-LQE-Q  383 (395)
T ss_pred             CceEEEEhhhhHHHHHHHHHHhcCCCCCccceeeeccccccCcccccc-chhhhccccCCeeEEEEecCCCCCc-ccC-c
Confidence            999999999999999999999998776555677776332111111110 111  11149999999999999999 666 7


Q ss_pred             CCcccCCCCCch
Q psy11141        444 NNHLLNEAGAPK  455 (566)
Q Consensus       444 ~~~Lld~~Glp~  455 (566)
                      +++|+|.+||||
T Consensus       384 ~~~Li~~~GlPk  395 (395)
T KOG2833|consen  384 NESLIDPSGLPK  395 (395)
T ss_pred             hhhhcCCCCCCC
Confidence            899999999996

>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>KOG2833|consensus Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG1537|consensus Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>KOG1511|consensus Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG4644|consensus Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3f0n_A414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 7e-80
3f0n_A 414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 6e-11
3d4j_A400 Crystal Structure Of Human Mevalonate Diphosphate D 3e-76
3d4j_A 400 Crystal Structure Of Human Mevalonate Diphosphate D 3e-12
1fi4_A416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 2e-58
1fi4_A 416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 1e-08
2hke_A380 Mevalonate Diphosphate Decarboxylase From Trypanoso 1e-46
2hke_A 380 Mevalonate Diphosphate Decarboxylase From Trypanoso 5e-07
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 2e-28
3qt5_A 332 Crystal Structure Of Staphylococcus Epidermidis Mev 9e-05
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 4e-28
3qt8_A 332 Crystal Structure Of Mutant S192a Staphylococcus Ep 9e-05
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 2e-27
4dpw_A 332 Crystal Structure Of Staphylococcus Epidermidis D28 9e-05
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 5e-25
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure 
Iteration: 1

 Score =  295 bits (754), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 225/368 (61%), Gaps = 42/368 (11%)
Query: 115 RMHAKTSVALSPDFTEDKLWLNGK-----------------KLAEQEKSSRE------MA 151
           ++   T+VA+S DFTED++WLNG+                 +LA + +S+ +        
Sbjct: 61  QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 120
Query: 152 DWKMHICSENNFPTXXXXXXXXXXYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFG 211
            +K+H+ S NNFPT          Y+CL +TLA   G+   ++S +AR+GSGSACRS++G
Sbjct: 121 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE-GDLSEVARRGSGSACRSLYG 179
Query: 212 GFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTD 271
           GFV W+    G+Q+DG   I R         QI  E +W  +R++ILVV+   K T ST 
Sbjct: 180 GFVEWQM---GEQADGKDSIAR---------QIAPEWHWPQLRILILVVSADKKQTGSTV 227
Query: 272 GMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331
           GMQ +  TSTL + R  ++VP R   M   ++ +DF  FA+LTMKDSNQFHA CLDT+PP
Sbjct: 228 GMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPP 287
Query: 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPS 391
           I Y+NDTS  I++ VH FNT  G+TKVAYTFDAGPNA ++ LE+TV   ++ +   FPP+
Sbjct: 288 ISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPA 347
Query: 392 SGISAPYIRGLEYLNILPPVQLPS---FTPQPAGLLQYLISTKIGSGPKILDDIPNNHLL 448
           +     +++GL+   +L   +L +     P P G +QY+I+T++G GP++LDD  ++HLL
Sbjct: 348 AN-GDKFLKGLQVAPVLLSDELKAALVVEPSPGG-VQYIIATQVGPGPQVLDDT-HDHLL 404
Query: 449 NEAGAPKH 456
            + G P+ 
Sbjct: 405 GQDGLPQR 412
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-95
3f0n_A 414 Mevalonate pyrophosphate decarboxylase; cholestero 3e-09
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-08
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 4e-92
2hke_A 380 Diphosphomevalonate decarboxylase, putative; meval 1e-07
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 1e-07
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 4e-88
1fi4_A 416 Mevalonate 5-diphosphate decarboxylase; mixed alph 8e-08
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 3e-07
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 1e-62
3qt5_A 332 Mevalonate diphosphate decarboxylase; GHMP kinase 7e-08
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 2e-05
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 2e-61
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 2e-06
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 5e-06
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 1e-57
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 2e-05
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
 Score =  297 bits (760), Expect = 1e-95
 Identities = 155/368 (42%), Positives = 219/368 (59%), Gaps = 38/368 (10%)

Query: 115 RMHAKTSVALSPDFTEDKLWLNGK-----------------------KLAEQEKSSREMA 151
           ++   T+VA+S DFTED++WLNG+                       +  E   +     
Sbjct: 61  QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 120

Query: 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFG 211
            +K+H+ S NNFPTAAGLASSAAGY+CL +TLA   G+   ++S +AR+GSGSACRS++G
Sbjct: 121 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEG-DLSEVARRGSGSACRSLYG 179

Query: 212 GFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTD 271
           GFV W+   +    D            S A QI  E +W  +R++ILVV+   K T ST 
Sbjct: 180 GFVEWQMGEQADGKD------------SIARQIAPEWHWPQLRILILVVSADKKQTGSTV 227

Query: 272 GMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331
           GMQ +  TSTL + R  ++VP R   M   ++ +DF  FA+LTMKDSNQFHA CLDT+PP
Sbjct: 228 GMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPP 287

Query: 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPS 391
           I Y+NDTS  I++ VH FNT  G+TKVAYTFDAGPNA ++ LE+TV   ++ +   FPP+
Sbjct: 288 ISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPA 347

Query: 392 SGISAPYIRGLEYLNILPPVQLPSFTPQP-AGLLQYLISTKIGSGPKILDDIPNNHLLNE 450
           +              +L      +   +P  G +QY+I+T++G GP++LDD  ++HLL +
Sbjct: 348 ANGDKFLKGLQVAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDD-THDHLLGQ 406

Query: 451 AGAPKHLM 458
            G P+  +
Sbjct: 407 DGLPQRDL 414
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 100.0
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.96
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.95
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.89
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.88
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.86
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.85
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.85
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.84
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.83
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.83
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.81
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.8
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.78
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.74
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.73
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.72
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.72
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.7
3f0n_A 414 Mevalonate pyrophosphate decarboxylase; cholestero 99.34
3lto_A 323 Mevalonate diphosphate decarboxylase; protein stru 99.12
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.04
1fi4_A 416 Mevalonate 5-diphosphate decarboxylase; mixed alph 98.8
3qt5_A 332 Mevalonate diphosphate decarboxylase; GHMP kinase 98.76
2hke_A 380 Diphosphomevalonate decarboxylase, putative; meval 98.74
2gs8_A 317 Mevalonate pyrophosphate decarboxylase; streptococ 97.63
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 91.65
1h72_C296 HK, homoserine kinase; transferase, threonine bios 87.55
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=1.8e-75  Score=621.67  Aligned_cols=357  Identities=46%  Similarity=0.817  Sum_probs=310.7

Q ss_pred             CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchh----hhh
Q psy11141         70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAE----QEK  145 (566)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~----~~~  145 (566)
                      ++|+|||+||||||           +|++||||.|+|||+||++++|||+|+|++++++++|++||||++.+.    ..+
T Consensus        27 ~A~~NIAlIKYWGK-----------rd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~   95 (414)
T 3f0n_A           27 TAPVNIAVIKYWGK-----------RDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQA   95 (414)
T ss_dssp             EECCEEEEECCCCE-----------EETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHH
T ss_pred             Eecccchhhhhccc-----------ccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHH
Confidence            38999999999986           999999999999999999888999999999998888999999976321    111


Q ss_pred             hh-----hccC--------------CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCCHHHHHHHHHHccCCch
Q psy11141        146 SS-----REMA--------------DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSAC  206 (566)
Q Consensus       146 ~l-----~~~~--------------~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaa  206 (566)
                      .+     .++.              ..+++|+++|+||+++|||||||++||++.|+|+++++ .+||+++||+|+||+|
T Consensus        96 ~l~~iR~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l-~~el~~lA~~~sGs~~  174 (414)
T 3f0n_A           96 CLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV-EGDLSEVARRGSGSAC  174 (414)
T ss_dssp             HHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC-CSCCHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcccccccccccccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC-hHHHHHHHHHhCCCcc
Confidence            11     1111              26899999999999999999999999999999999999 6899999999999999


Q ss_pred             hhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHH
Q psy11141        207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHR  286 (566)
Q Consensus       207 rSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~  286 (566)
                      ||+|||||+|..   +...|+.+         +++++++++.+||+|++++++++..+|+++||++|+++++++++|++|
T Consensus       175 ~s~~GG~v~w~~---~~~~d~~d---------s~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~  242 (414)
T 3f0n_A          175 RSLYGGFVEWQM---GEQADGKD---------SIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFR  242 (414)
T ss_dssp             GGGSSSEEEECC---CSCTTCTT---------CCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHH
T ss_pred             hHhhCCEEEEEe---ccCCCCCc---------eEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHH
Confidence            999999999987   64334544         778898766789999999999999999999999999999999999999


Q ss_pred             HhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc
Q psy11141        287 VNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP  366 (566)
Q Consensus       287 v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP  366 (566)
                      +++++..+++.|+.||.++||+.|++++|+|+++||++|++++|++.||+|.+.++++.++++|+..|.+.++|||||||
T Consensus       243 v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGP  322 (414)
T 3f0n_A          243 AESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGP  322 (414)
T ss_dssp             HHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence            98645899999999999999999999999999999999999999999999999999999999986543378999999999


Q ss_pred             ceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCC-----CCCCCC-CCCccEEEEccCCCCcEEcC
Q psy11141        367 NACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLP-----SFTPQP-AGLLQYLISTKIGSGPKILD  440 (566)
Q Consensus       367 nV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~ii~t~vG~Gp~~~~  440 (566)
                      ||++||++++.++|.+.|++.|+...+ ..+|++|++    ++...++     .+..++ +++|+|||+|+||+||++++
T Consensus       323 nv~vl~~~~~~~~v~~~l~~~f~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~  397 (414)
T 3f0n_A          323 NAVIFTLEDTVAEFVAAVRHSFPPAAN-GDKFLKGLQ----VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLD  397 (414)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHSCCSCC---CCEEESC----CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEEC
T ss_pred             CEEEEEecccHHHHHHHHHHhcCCCCC-cccccccCc----cccccCChhhhhcccccccCCceeEEEECCCCCCCEECC
Confidence            999999999999999999999987553 567888866    3333333     345555 89999999999999999998


Q ss_pred             CCCCCcccCCCCCchh
Q psy11141        441 DIPNNHLLNEAGAPKH  456 (566)
Q Consensus       441 ~~~~~~Lld~~Glp~a  456 (566)
                      + ++++|+|++|+|+.
T Consensus       398 ~-~~~~l~~~~g~~~~  412 (414)
T 3f0n_A          398 D-THDHLLGQDGLPQR  412 (414)
T ss_dssp             C-GGGCSBCTTSSBC-
T ss_pred             c-hhHhcCCCCCCcCC
Confidence            7 88999999999963
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 2e-68
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 7e-10
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 2e-34
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 4e-12
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  218 bits (556), Expect = 2e-68
 Identities = 76/202 (37%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 253 MRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAE 312
           M+  +LVV+D  K  SST GMQ T  TS L++ R+  +VP R   M +A+  +DF  FA+
Sbjct: 2   MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61

Query: 313 LTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYV 372
            TM DSN FHA CLD++PPI YMNDTS  I+ + H  N   GET VAYTFDAGPNA LY 
Sbjct: 62  ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121

Query: 373 LENTVPLLLSTLVQYFPPSSG----ISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLI 428
           L      L + + + F    G     +   +    +              +    +  +I
Sbjct: 122 LAENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQFESSNFTARELDLELQKDVARVI 181

Query: 429 STKIGSGPKILDDIPNNHLLNE 450
            T++GSGP+  ++     L++ 
Sbjct: 182 LTQVGSGPQETNE----SLIDA 199
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.72
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 99.68
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.59
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.16
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.04
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.02
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.95
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 98.68
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 98.5
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 98.48
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 98.34
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 98.14
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.97
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 97.77
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 97.54
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 97.32
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 97.09
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 96.99
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 96.77
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 94.2
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-41  Score=325.21  Aligned_cols=159  Identities=44%  Similarity=0.711  Sum_probs=139.3

Q ss_pred             CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh----hh
Q psy11141         70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ----EK  145 (566)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~----~~  145 (566)
                      .+|+|||+||||||           +|+++|||.|+|||+||+++.++|+|+|++++++++|++++||++.+..    ++
T Consensus         7 ~apsNIALiKYWGK-----------~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~   75 (188)
T d1fi4a1           7 TAPVNIATLKYWGK-----------RDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQN   75 (188)
T ss_dssp             EECCEEEEECCCCE-----------EETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHH
T ss_pred             EccCcEEEEEeccc-----------cCcccCCCCCCeEEEEecCCCcEEEEEEEeCCCCcccceeECCeecccchHHHHH
Confidence            47889999999986           9999999999999999998889999999999988899999999852211    11


Q ss_pred             h------h-----------hccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCch
Q psy11141        146 S------S-----------REMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSAC  206 (566)
Q Consensus       146 ~------l-----------~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaa  206 (566)
                      .      +           +....++++|+++|+||+++|||||||++||++.|++++++++  .++++.+||+||||||
T Consensus        76 ~~~~l~~~~~~~~~~~~~~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAc  155 (188)
T d1fi4a1          76 CLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSAC  155 (188)
T ss_dssp             HHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHhcccccCcccccceEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccchh
Confidence            0      0           1223457999999999999999999999999999999999998  8999999999999999


Q ss_pred             hhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCC
Q psy11141        207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG  251 (566)
Q Consensus       207 rSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp  251 (566)
                      ||+|||||+|..   |..+||.|         ++++++.++.|||
T Consensus       156 RSi~Gg~v~W~~---g~~~dg~d---------~~a~~~~~~~hWp  188 (188)
T d1fi4a1         156 RSLFGGYVAWEM---GKAEDGHD---------SMAVQIADSSDWP  188 (188)
T ss_dssp             GGGSSSEEEEEC---CSCTTCTT---------CEEEEEECGGGST
T ss_pred             hhhcCCeeEecc---CCCCCCCc---------eeEEECCCccCCC
Confidence            999999999998   76667776         8999998888997
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure