Psyllid ID: psy11193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVFDR
Secondary Structure (PSIPRED)
ccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHcccccHHHHHcHHHHHHHHccccHHcccccccHHHHcHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEHHEcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSSLLENALGAAygtakagtgIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISgavqepvkypaykgfihlgaglavgFSGLAAGFAIGIVgdagvrgtaqqPRLFVALGAAYgtakagtgIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISgavqepvkypaykgfihlgaglavgFSGLAAGFAIGIVgdagvrgtaqqprLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFhclfpsniiynqshefswVRDRHFAKKkkqvlknpnisSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEmwgrvfdr
Flexible Loop (DISEMBL)
MSSLLENALGAAygtakagtgIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAkkkkqvlknpnissyFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFlrtemwgrvfdr
Low Complexity Region (SEG)
MSSLLENalgaaygtakagtgiaaMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFValgaaygtakagtgiaaMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVFDR
Disordered region (IsUnstruct)
********LGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVF**
Disordered Region (DISOPRED)
MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFA***********ISSYFHILWRMCIIINMMDKS******KNKFKTLLYLFLRTEMWGRVFD*
Disordered Region (DISEMBL)
MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVFDR
Disordered Region (DISPRO)
MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVFDR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLRTEMWGRVFDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
P23380	159	V-type proton ATPase 16 k	yes	N/A	0.394	0.842	0.866	9e-55
O16110	157	V-type proton ATPase 16 k	N/A	N/A	0.394	0.853	0.859	1e-53
P55277	156	V-type proton ATPase 16 k	N/A	N/A	0.394	0.858	0.845	9e-52
P31403	156	V-type proton ATPase 16 k	N/A	N/A	0.394	0.858	0.838	2e-51
Q26250	159	V-type proton ATPase 16 k	N/A	N/A	0.394	0.842	0.785	5e-49
Q03105	154	V-type proton ATPase 16 k	N/A	N/A	0.376	0.831	0.8	8e-48
P27449	155	V-type proton ATPase 16 k	yes	N/A	0.376	0.825	0.792	1e-47
P63081	155	V-type proton ATPase 16 k	yes	N/A	0.388	0.851	0.777	1e-47
P63082	155	V-type proton ATPase 16 k	yes	N/A	0.388	0.851	0.777	1e-47
O18882	155	V-type proton ATPase 16 k	N/A	N/A	0.376	0.825	0.784	2e-47

>sp|P23380|VATL_DROME V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16-1 PE=2 SV=1

 Score =  214 bits (544), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 17  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 75

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  Y+GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 76  VLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 135

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 136 ILILIFAEVLGLYGL 150

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Drosophila melanogaster (taxid: 7227)

>sp|O16110|VATL_AEDAE V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 121/135 (89%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 15  GVMGAAAA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+G++  P KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74  VLIAGSLDTPTKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 133

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 134 ILILIFAEVLGLYGL 148

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Aedes aegypti (taxid: 7159)

>sp|P55277|VATL_HELVI V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1

 Score =  204 bits (518), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 115/136 (84%), Positives = 120/136 (88%), Gaps = 2/136 (1%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 12  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 70

Query: 160 VLISGAVQEPVK-YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 218
           VLI+G++  P   Y  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG
Sbjct: 71  VLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 130

Query: 219 MILILIFAEVLGPYFL 234
           MILILIFAEVLG Y L
Sbjct: 131 MILILIFAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Heliothis virescens (taxid: 7102)

>sp|P31403|VATL_MANSE V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/136 (83%), Positives = 120/136 (88%), Gaps = 2/136 (1%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 12  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 70

Query: 160 VLISGAVQEPVK-YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 218
           VLI+G++  P   Y  Y+GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG
Sbjct: 71  VLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 130

Query: 219 MILILIFAEVLGPYFL 234
           MILILIFAEVLG Y L
Sbjct: 131 MILILIFAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. It energizes electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|Q26250|VATL_NEPNO V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 116/135 (85%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+G GI+AMSVMRPELIMK IIPVVMAGIIAIYGLVVA
Sbjct: 14  GVMGAASA-MVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVA 72

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+G + E   Y  Y+GF+H+GAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRL+VGM
Sbjct: 73  VLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGM 132

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 133 ILILIFAEVLGLYGL 147

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nephrops norvegicus (taxid: 6829)

>sp|Q03105|VATL_TORMA V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1

 Score =  191 bits (484), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 113/130 (86%), Gaps = 2/130 (1%)

Query: 105 AQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISG 164
           A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+ 
Sbjct: 18  ASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAN 77

Query: 165 AVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 224
           ++ E +    +K F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI
Sbjct: 78  SLTEDISL--FKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 135

Query: 225 FAEVLGPYFL 234
           FAEVLG Y L
Sbjct: 136 FAEVLGLYGL 145

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Torpedo marmorata (taxid: 7788)

>sp|P27449|VATL_HUMAN V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 112/130 (86%), Gaps = 2/130 (1%)

Query: 105 AQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISG 164
           A    +F ALGAAYGTAK+GTGIAAMSVMRPE IMKSIIPVVMAGIIAIYGLVVAVLI+ 
Sbjct: 19  ASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN 78

Query: 165 AVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 224
           ++ + +    YK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI
Sbjct: 79  SLNDDISL--YKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 136

Query: 225 FAEVLGPYFL 234
           FAEVLG Y L
Sbjct: 137 FAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|P63081|VATL_RAT V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 116/135 (85%), Gaps = 3/135 (2%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F A+GAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 15  GVMG-ASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+ ++ + +    Y+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74  VLIANSLTDGITL--YRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 132 ILILIFAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|P63082|VATL_MOUSE V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 116/135 (85%), Gaps = 3/135 (2%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F A+GAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 15  GVMG-ASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+ ++ + +    Y+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74  VLIANSLTDGITL--YRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 132 ILILIFAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|O18882|VATL_SHEEP V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 113/130 (86%), Gaps = 2/130 (1%)

Query: 105 AQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISG 164
           A    +F ALGAAYGTAK+GTGIAAMSVMRPE+IMKSIIPVVMAGIIAIYGLVVAVLI+ 
Sbjct: 19  ASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIAN 78

Query: 165 AVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 224
           ++ + +    Y+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI
Sbjct: 79  SLNDGISL--YRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 136

Query: 225 FAEVLGPYFL 234
           FAEVLG Y L
Sbjct: 137 FAEVLGLYGL 146

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
148298829	155	vacuolar H+ ATP synthase 16 kDa proteoli	0.394	0.864	0.881	5e-54
289739603	158	vacuolar H+-ATPase v0 sector subunits C/	0.394	0.848	0.874	2e-53
195429515	159	GK19648 [Drosophila willistoni] gi|19415	0.394	0.842	0.874	2e-53
312374545	190	hypothetical protein AND_15797 [Anophele	0.408	0.731	0.846	3e-53
224924396	158	vacuolar H+-ATPase V0 sector, subunits c	0.394	0.848	0.874	3e-53
388504474	156	unknown [Lotus japonicus]	0.394	0.858	0.874	4e-53
17136612	159	vacuolar H[+] ATPase subunit 16-1, isofo	0.394	0.842	0.866	6e-53
157674417	157	putative V-ATPase C-subunit [Lutzomyia l	0.394	0.853	0.874	6e-53
170050379	157	conserved hypothetical protein [Culex qu	0.394	0.853	0.874	6e-53
156550753	162	PREDICTED: V-type proton ATPase 16 kDa p	0.394	0.827	0.866	9e-53

>gi|148298829|ref|NP_001091762.1| vacuolar H+ ATP synthase 16 kDa proteolipid subunit [Bombyx mori] gi|95102608|gb|ABF51242.1| vacuolar H+ ATP synthase 16 kDa proteolipid subunit [Bombyx mori] gi|156254545|gb|ABU62758.1| vacuolar-type H+-ATPase subunit c [Bombyx mori]

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/135 (88%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 13  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 71

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA+QEP  YP YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 72  VLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 132 ILILIFAEVLGLYGL 146

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739603|gb|ADD18549.1| vacuolar H+-ATPase v0 sector subunits C/C [Glossina morsitans morsitans]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 16  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 74

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 75  VLIAGALEEPSKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 134

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 135 ILILIFAEVLGLYGL 149

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429515|ref|XP_002062804.1| GK19648 [Drosophila willistoni] gi|194158889|gb|EDW73790.1| GK19648 [Drosophila willistoni]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 17  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 75

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 76  VLIAGALEEPSKYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 135

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 136 ILILIFAEVLGLYGL 150

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374545|gb|EFR22081.1| hypothetical protein AND_15797 [Anopheles darlingi]

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/143 (84%), Positives = 127/143 (88%), Gaps = 4/143 (2%)

Query: 92  AIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGII 151
           A+ I  DAG+  T  Q  L  ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 43  ALRIFRDAGM--TVHQ--LSSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 98

Query: 152 AIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ 211
           AIYGLVVAVLI+G++ EP KYP YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ
Sbjct: 99  AIYGLVVAVLIAGSLDEPSKYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ 158

Query: 212 QPRLFVGMILILIFAEVLGPYFL 234
           QPRLFVGMILILIFAEVLG Y L
Sbjct: 159 QPRLFVGMILILIFAEVLGLYGL 181

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224924396|gb|ACN69148.1| vacuolar H+-ATPase V0 sector, subunits c/c' [Stomoxys calcitrans]

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 16  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 74

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 75  VLIAGALEEPSKYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 134

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 135 ILILIFAEVLGLYGL 149

Source: Stomoxys calcitrans

Species: Stomoxys calcitrans

Genus: Stomoxys

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|388504474|gb|AFK40303.1| unknown [Lotus japonicus]

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 122/135 (90%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA+ EP  YP YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 73  VLIAGALDEPKNYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 132

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 133 ILILIFAEVLGLYGL 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17136612|ref|NP_476801.1| vacuolar H[+] ATPase subunit 16-1, isoform A [Drosophila melanogaster] gi|24586010|ref|NP_724474.1| vacuolar H[+] ATPase subunit 16-1, isoform B [Drosophila melanogaster] gi|24586012|ref|NP_724475.1| vacuolar H[+] ATPase subunit 16-1, isoform C [Drosophila melanogaster] gi|24586014|ref|NP_724476.1| vacuolar H[+] ATPase subunit 16-1, isoform D [Drosophila melanogaster] gi|194864080|ref|XP_001970760.1| GG10820 [Drosophila erecta] gi|195331849|ref|XP_002032611.1| GM20869 [Drosophila sechellia] gi|195474127|ref|XP_002089343.1| Vha16 [Drosophila yakuba] gi|195580952|ref|XP_002080298.1| GD10321 [Drosophila simulans] gi|137478|sp|P23380.1|VATL_DROME RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; Short=VHA16K; AltName: Full=Ductin; AltName: Full=Vacuolar H+ ATPase subunit 16-1; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|8812|emb|CAA39449.1| unnamed protein product [Drosophila melanogaster] gi|457731|emb|CAA54908.1| ductin, subunit C proteolipid vacuolar proton channel [Drosophila melanogaster] gi|7302268|gb|AAF57359.1| vacuolar H[+] ATPase subunit 16-1, isoform A [Drosophila melanogaster] gi|7302269|gb|AAF57360.1| vacuolar H[+] ATPase subunit 16-1, isoform C [Drosophila melanogaster] gi|7302270|gb|AAF57361.1| vacuolar H[+] ATPase subunit 16-1, isoform B [Drosophila melanogaster] gi|21626870|gb|AAM68381.1| vacuolar H[+] ATPase subunit 16-1, isoform D [Drosophila melanogaster] gi|38048259|gb|AAR10032.1| similar to Drosophila melanogaster Vha16, partial [Drosophila yakuba] gi|46409108|gb|AAS93711.1| RH30178p [Drosophila melanogaster] gi|190662627|gb|EDV59819.1| GG10820 [Drosophila erecta] gi|194124581|gb|EDW46624.1| GM20869 [Drosophila sechellia] gi|194175444|gb|EDW89055.1| Vha16 [Drosophila yakuba] gi|194192307|gb|EDX05883.1| GD10321 [Drosophila simulans] gi|220951172|gb|ACL88129.1| Vha16-PA [synthetic construct] gi|220959654|gb|ACL92370.1| Vha16-PA [synthetic construct]

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 17  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 75

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  Y+GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 76  VLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 135

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 136 ILILIFAEVLGLYGL 150

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|157674417|gb|ABV60304.1| putative V-ATPase C-subunit [Lutzomyia longipalpis]

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 15  GVMGAAAA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74  VLIAGALEEPSKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 133

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 134 ILILIFAEVLGLYGL 148

Source: Lutzomyia longipalpis

Species: Lutzomyia longipalpis

Genus: Lutzomyia

Family: Psychodidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050379|ref|XP_001861266.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872018|gb|EDS35401.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 15  GVMGAAAA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+GA++EP KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74  VLIAGALEEPEKYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 133

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 134 ILILIFAEVLGLYGL 148

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550753|ref|XP_001600237.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Nasonia vitripennis]

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 124/135 (91%), Gaps = 1/135 (0%)

Query: 100 GVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
           GV G A    +F ALGAAYGTAK+GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 18  GVMGAASA-IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 76

Query: 160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
           VLI+G+++EP+KY  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct: 77  VLIAGSLEEPMKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 136

Query: 220 ILILIFAEVLGPYFL 234
           ILILIFAEVLG Y L
Sbjct: 137 ILILIFAEVLGLYGL 151

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
FB|FBgn0262736	159	Vha16-1 "Vacuolar H[+] ATPase	0.394	0.842	0.748	1.2e-44
ZFIN|ZDB-GENE-030131-4127	153	atp6v0cb "ATPase, H+ transport	0.302	0.673	0.838	5.9e-42
FB|FBgn0028667	158	Vha16-3 "Vacuolar H[+] ATPase	0.302	0.651	0.819	5.9e-42
UNIPROTKB|F1SUH8	155	ATP6V0C "Uncharacterized prote	0.302	0.664	0.828	5.2e-41
ZFIN|ZDB-GENE-020419-23	154	atp6v0ca "ATPase, H+ transport	0.302	0.668	0.828	6.6e-41
UNIPROTKB|F1Q1T0	155	ATP6V0C "Uncharacterized prote	0.302	0.664	0.809	1.7e-40
UNIPROTKB|P23956	155	ATP6V0C "V-type proton ATPase	0.302	0.664	0.8	4.6e-40
UNIPROTKB|F1P5K5	152	ATP6V0C "Uncharacterized prote	0.302	0.677	0.819	9.4e-40
UNIPROTKB|P27449	155	ATP6V0C "V-type proton ATPase	0.302	0.664	0.809	9.4e-40
MGI|MGI:88116	155	Atp6v0c "ATPase, H+ transporti	0.388	0.851	0.666	1.1e-37

FB|FBgn0262736 Vha16-1 "Vacuolar H[+] ATPase 16kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 101/135 (74%), Positives = 106/135 (78%)

Query:   100 GVRGTAQQPRLFVXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
             GV G A    +F                  MSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct:    17 GVMGAASAI-IFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 75

Query:   160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
             VLI+GA++EP KY  Y+GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct:    76 VLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 135

Query:   220 ILILIFAEVLGPYFL 234
             ILILIFAEVLG Y L
Sbjct:   136 ILILIFAEVLGLYGL 150

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-4127 atp6v0cb "ATPase, H+ transporting, lysosomal, V0 subunit c, b" [Danio rerio (taxid:7955)]

 Score = 416 (151.5 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 88/105 (83%), Positives = 94/105 (89%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+ ++ +  K   YK F+HLGAGL+VG 
Sbjct:    42 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSISD--KITLYKSFLHLGAGLSVGL 99

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   100 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 144

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0034765 "regulation of ion transmembrane transport" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005245 "voltage-gated calcium channel activity" evidence=IMP

FB|FBgn0028667 Vha16-3 "Vacuolar H[+] ATPase 16kD subunit 3" [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 86/105 (81%), Positives = 95/105 (90%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             M+VMRPELIMKSIIPVVMAGIIAIYGLVV+VLI+G++ +   Y   KG+IHL AGL+VGF
Sbjct:    47 MAVMRPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSD--SYTIRKGYIHLAAGLSVGF 104

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             +GLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   105 AGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 149

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

UNIPROTKB|F1SUH8 ATP6V0C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 406 (148.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 87/105 (82%), Positives = 93/105 (88%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+ ++ E +    YK F+ LGAGL+VG 
Sbjct:    44 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTEGISL--YKSFLQLGAGLSVGL 101

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   102 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 146

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-020419-23 atp6v0ca "ATPase, H+ transporting, lysosomal, V0 subunit c, a" [Danio rerio (taxid:7955)]

 Score = 405 (147.6 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 87/105 (82%), Positives = 92/105 (87%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+  + +  K   YK  +HLGAGL+VG 
Sbjct:    42 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANNIGD--KISLYKSILHLGAGLSVGL 99

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   100 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 144

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

UNIPROTKB|F1Q1T0 ATP6V0C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 401 (146.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 85/105 (80%), Positives = 93/105 (88%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+ ++ + +    Y+ F+ LGAGL+VG 
Sbjct:    44 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISL--YRSFLQLGAGLSVGL 101

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   102 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 146

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|P23956 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 84/105 (80%), Positives = 93/105 (88%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPE+IMKSIIPVVMAGIIAIYGLVVAVLI+ ++ + +    Y+ F+ LGAGL+VG 
Sbjct:    44 MSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISL--YRSFLQLGAGLSVGL 101

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   102 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 146

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1P5K5 ATP6V0C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 400 (145.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 86/105 (81%), Positives = 92/105 (87%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+ A+   +    +K F+ LGAGL+VG 
Sbjct:    41 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANALSPTITL--FKSFLQLGAGLSVGL 98

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:    99 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 143

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|P27449 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 85/105 (80%), Positives = 92/105 (87%)

Query:   130 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189
             MSVMRPE IMKSIIPVVMAGIIAIYGLVVAVLI+ ++ + +    YK F+ LGAGL+VG 
Sbjct:    44 MSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISL--YKSFLQLGAGLSVGL 101

Query:   190 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234
             SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG Y L
Sbjct:   102 SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 146

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:88116 Atp6v0c "ATPase, H+ transporting, lysosomal V0 subunit C" [Mus musculus (taxid:10090)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 90/135 (66%), Positives = 99/135 (73%)

Query:   100 GVRGTAQQPRLFVXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159
             GV G A    +F                  MSVMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct:    15 GVMG-ASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73

Query:   160 VLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 219
             VLI+ ++ + +    Y+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGM
Sbjct:    74 VLIANSLTDGITL--YRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131

Query:   220 ILILIFAEVLGPYFL 234
             ILILIFAEVLG Y L
Sbjct:   132 ILILIFAEVLGLYGL 146

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=ISO

GO:0005773 "vacuole" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007035 "vacuolar acidification" evidence=TAS

GO:0007042 "lysosomal lumen acidification" evidence=TAS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23380	VATL_DROME	No assigned EC number	0.8666	0.3941	0.8427	yes	N/A
P0DH92	VATL1_ARATH	No assigned EC number	0.6428	0.3676	0.7621	yes	N/A
P54642	VATL_DICDI	No assigned EC number	0.5434	0.3970	0.6887	yes	N/A
Q0IUB5	VATL_ORYSJ	No assigned EC number	0.6335	0.3823	0.7878	yes	N/A
P23956	VATL_BOVIN	No assigned EC number	0.7846	0.3764	0.8258	yes	N/A
P0DH94	VATL5_ARATH	No assigned EC number	0.6428	0.3676	0.7621	yes	N/A
P59229	VATL4_ARATH	No assigned EC number	0.6259	0.3823	0.7831	yes	N/A
P50515	VATL_SCHPO	No assigned EC number	0.752	0.3617	0.7639	yes	N/A
P59228	VATL2_ARATH	No assigned EC number	0.6259	0.3823	0.7878	yes	N/A
P34546	VATL2_CAEEL	No assigned EC number	0.6899	0.3764	0.7950	yes	N/A
P25515	VATL1_YEAST	No assigned EC number	0.712	0.3617	0.7687	yes	N/A
P63081	VATL_RAT	No assigned EC number	0.7777	0.3882	0.8516	yes	N/A
P63082	VATL_MOUSE	No assigned EC number	0.7777	0.3882	0.8516	yes	N/A
P27449	VATL_HUMAN	No assigned EC number	0.7923	0.3764	0.8258	yes	N/A
P0DH93	VATL3_ARATH	No assigned EC number	0.6428	0.3676	0.7621	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	340
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	1e-46
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	3e-46
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	6e-09
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	8e-09
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	2e-08
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	3e-08
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	4e-08
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	7e-08
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	5e-07
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	6e-07
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	1e-05
PRK14893	161	PRK14893, PRK14893, V-type ATP synthase subunit K;	1e-05
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	2e-04
PRK14893	161	PRK14893, PRK14893, V-type ATP synthase subunit K;	0.002
PRK08344	157	PRK08344, PRK08344, V-type ATP synthase subunit K;	0.002

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score =  153 bits (389), Expect = 1e-46
 Identities = 81/97 (83%), Positives = 87/97 (89%)

Query: 110 LFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEP 169
           +F ALGAAYGTAK+G GIAAM VMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+G+++  
Sbjct: 12  VFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK 71

Query: 170 VKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGV 206
             Y  YKGFIHLGAGLAVG SGLAAGFAIGIVGDAGV
Sbjct: 72  SNYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score =  152 bits (386), Expect = 3e-46
 Identities = 81/100 (81%), Positives = 90/100 (90%)

Query: 2   SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 61
           ++L+ +ALGAAYGTAK+G GIAAM VMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+G++
Sbjct: 9   AALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSL 68

Query: 62  QEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGV 101
           +    Y  YKGFIHLGAGLAVG SGLAAGFAIGIVGDAGV
Sbjct: 69  KPKSNYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 51.7 bits (125), Expect = 6e-09
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 27/93 (29%)

Query: 73  FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSV 132
              LGAGLA+G + L AG  IGI G A +   A+ P LF                     
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELF--------------------- 39

Query: 133 MRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA 165
                  K +I   +A  +AIYGLV+A+L+  A
Sbjct: 40  ------GKMLIGAALAEALAIYGLVIALLLLFA 66

Length = 66

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 50.9 bits (123), Expect = 8e-09
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232
              LGAGLA+G + L AG  IGI G A +   A+ P LF  M++    AE L  Y
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIY 55

Length = 66

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 8  ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA 60
          ALGA  G   AG          PEL  K +I   +A  +AIYGLV+A+L+  A
Sbjct: 14 ALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIALLLLFA 66

Length = 66

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 38/206 (18%)

Query: 8   ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKY 67
            LG+  G    G   A +    P     +I+   +     +YG +VA+LI    +     
Sbjct: 13  GLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKTA--- 69

Query: 68  PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGI 127
                +  L AGLAVG +GL+A    GI   AG+   A+   +F                
Sbjct: 70  ---PEWAMLAAGLAVGLAGLSA-IGQGIAASAGLGAVAEDDSIF---------------- 109

Query: 128 AAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV 187
                       K+++  V+    AIYGL+VA+L+   V      P  +    LGAGLAV
Sbjct: 110 -----------GKAMVFSVLPETQAIYGLLVAILLLVGV---FASPGVETIAALGAGLAV 155

Query: 188 GFSGLAAGFAIGIVGDAGVRGTAQQP 213
           GF+GL +G   GI     +  TA+ P
Sbjct: 156 GFAGL-SGIGQGITAAGAIGATARDP 180

Length = 213

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 29/159 (18%)

Query: 9   LGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYP 68
           +G+A G  KAG   A +    PE   K++I  ++ G   +YG V+  LI   +   +   
Sbjct: 30  IGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITPEL--S 87

Query: 69  AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIA 128
             +G  +  A L +   GL +  + G V  AG++  A+                      
Sbjct: 88  LAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAK---------------------- 125

Query: 129 AMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQ 167
                RPE   K II   M    AI   VV+ L+   V+
Sbjct: 126 -----RPEEFTKGIILAAMVETYAILAFVVSFLLLNGVK 159

Length = 159

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEV 228
            A KG   +GAGLAVG + L AG   GI+G A V   A+QP     LF  M + L   E 
Sbjct: 3   AAKKGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEA 62

Query: 229 LGPY 232
           LG Y
Sbjct: 63  LGIY 66

Length = 79

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 23/99 (23%)

Query: 68  PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGI 127
            A KG   +GAGLAVG + L AG   GI+G A V   A+QP                   
Sbjct: 3   AAKKGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE------------------ 44

Query: 128 AAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 166
                   +L  K  I + +   + IYGLV+A+L+  A 
Sbjct: 45  -----AAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78

Length = 79

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 30/147 (20%)

Query: 76  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
           LGA LAVG SG+                           G+A G  KAG   A +    P
Sbjct: 19  LGAALAVGLSGI---------------------------GSAKGVGKAGEAAAGLLTEEP 51

Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAG 195
           E   K++I  ++ G   +YG V+  LI   +   +     +G  +  A L +   GL + 
Sbjct: 52  EKFGKALILQLLPGTQGLYGFVIGFLIWQKITPEL--SLAQGLAYFAACLPIAIVGLFSA 109

Query: 196 FAIGIVGDAGVRGTAQQPRLFV-GMIL 221
            + G V  AG++  A++P  F  G+IL
Sbjct: 110 ISQGKVAAAGIQILAKRPEEFTKGIIL 136

Length = 159

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 34/141 (24%)

Query: 76  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
           +GAGLAVG +GL +G   GI G +G    A+ P  F            GT I   ++ + 
Sbjct: 3   IGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKF------------GTAIVFQALPQT 50

Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAG 195
           +                +YG +VA+LI    +          +  L AGLAVG +GL+A 
Sbjct: 51  Q---------------GLYGFLVAILILFVFKTA------PEWAMLAAGLAVGLAGLSA- 88

Query: 196 FAIGIVGDAGVRGTAQQPRLF 216
              GI   AG+   A+   +F
Sbjct: 89  IGQGIAASAGLGAVAEDDSIF 109

Length = 213

>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 30/160 (18%)

Query: 76  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
           +GAG+AVGF+GL +G   GI     V   A+   +F                        
Sbjct: 13  IGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFA----------------------- 49

Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLI---SGAVQEPVKYPAYKGFIHLGAGLAVGFSGL 192
               + II   +    AIYG ++A+L+   SG +          G + +GAG A+GF+GL
Sbjct: 50  ----RGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAGAAIGFAGL 105

Query: 193 AAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232
            +G   GI   + V    + P +F   I+     E    Y
Sbjct: 106 GSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIY 145

Length = 161

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)

Query: 14  GTAKAGTGIAAMSVM-----RPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYP 68
           G +  G GIAA + +        +  K+++  V+    AIYGL+VA+L+   V      P
Sbjct: 85  GLSAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGV---FASP 141

Query: 69  AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIA 128
             +    LGAGLAVGF+GL+ G   GI     +  TA+ P                    
Sbjct: 142 GVETIAALGAGLAVGFAGLS-GIGQGITAAGAIGATARDP-------------------- 180

Query: 129 AMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 162
                  + + K ++  VM    AI+GL++A+LI
Sbjct: 181 -------DAMGKGLVLAVMPETFAIFGLLIAILI 207

Length = 213

>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 8   ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI---SGAVQEP 64
            LG+  G   A  G         ++  + II   +    AIYG ++A+L+   SG +   
Sbjct: 23  GLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGG 82

Query: 65  VKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 111
                  G + +GAG A+GF+GL +G   GI   + V    + P +F
Sbjct: 83  EGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMF 129

Length = 161

>gnl|CDD|236246 PRK08344, PRK08344, V-type ATP synthase subunit K; Validated

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%)

Query: 73  FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSV 132
           ++ LGA LA G +G A+ F +GI G A     A+  + F                     
Sbjct: 2   YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNF--------------------- 40

Query: 133 MRPELIMKSIIPVVMAGIIAIYGLVVAVLI---------SGAVQEPVKYPAYKGFIHLGA 183
            R  LI+  + P+       IYGL+   LI              EP      K    LGA
Sbjct: 41  -RNALILAGL-PMTQT----IYGLITLFLILMYAGILGGGFKFAEPDTINLGKALALLGA 94

Query: 184 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEVLG 230
           GL VG + L +    GI+  +G+    + P + F   I++  +AE++G
Sbjct: 95  GLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMG 142

Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PRK06271	213	V-type ATP synthase subunit K; Validated	100.0
PRK06558	159	V-type ATP synthase subunit K; Validated	99.97
PRK06558	159	V-type ATP synthase subunit K; Validated	99.96
PRK06649	143	V-type ATP synthase subunit K; Validated	99.96
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.96
PRK08344	157	V-type ATP synthase subunit K; Validated	99.95
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.95
PRK08344	157	V-type ATP synthase subunit K; Validated	99.95
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.95
PRK06649	143	V-type ATP synthase subunit K; Validated	99.93
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.93
PRK06271	213	V-type ATP synthase subunit K; Validated	99.92
KOG0233|consensus	196		99.92
KOG0232|consensus	156		99.92
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.91
KOG0232|consensus	156		99.9
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.85
KOG0233|consensus	196		99.84
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.56
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.52
CHL00061	81	atpH ATP synthase CF0 C subunit	99.5
PRK06251	102	V-type ATP synthase subunit K; Validated	99.48
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.46
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.46
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.45
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.44
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.43
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.4
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.39
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.36
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.34
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.33
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.33
CHL00061	81	atpH ATP synthase CF0 C subunit	99.32
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.32
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.26
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.26
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.26
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.25
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.25
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.25
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.23
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.21
PRK06251	102	V-type ATP synthase subunit K; Validated	99.21
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.19
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.19
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.11
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.1
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.09
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.07
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.05
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.03
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.02
PRK05880	81	F0F1 ATP synthase subunit C; Validated	98.99
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	98.98
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	98.92
PRK07874	80	F0F1 ATP synthase subunit C; Validated	98.83
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	98.72
KOG3025|consensus	137		97.38
KOG3025|consensus	137		96.08

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=100.00  E-value=5.2e-41  Score=309.55  Aligned_cols=201  Identities=29%  Similarity=0.451  Sum_probs=188.3

Q ss_pred             chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHHH
Q psy11193          3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV   82 (340)
Q Consensus         3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~v   82 (340)
                      +++++++|+++|+++++.+.+++..||||.++|++++.++||+++|||+++++++..+.++      .++|.++++||++
T Consensus         8 a~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~------~~g~~~lgagL~v   81 (213)
T PRK06271          8 AVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT------APEWAMLAAGLAV   81 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------HhHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999987532      4799999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11193         83 GFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI  162 (340)
Q Consensus        83 Gla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili  162 (340)
                      |++++ |+++||++|++++++++                           ++||.++|+++..+|+|+++|||+|+++++
T Consensus        82 Gla~~-sa~g~G~~g~a~~~a~a---------------------------~~p~~f~~~li~~~~~E~~aiyGlIva~ll  133 (213)
T PRK06271         82 GLAGL-SAIGQGIAASAGLGAVA---------------------------EDDSIFGKAMVFSVLPETQAIYGLLVAILL  133 (213)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHh---------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 89999999999988887                           589999999999999999999999999999


Q ss_pred             HhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        163 SGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       163 ~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ..++.++   +..+++.++++||++|++++ ||++||+++++++++++||||.++|+++..+++|+++||++++++++.
T Consensus       134 ~~~~~~~---~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~  208 (213)
T PRK06271        134 LVGVFAS---PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIM  208 (213)
T ss_pred             HHhccCc---chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876542   45679999999999999999 999999999999999999999999999999999999999999999866

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=9.5e-31  Score=232.25  Aligned_cols=146  Identities=25%  Similarity=0.380  Sum_probs=137.1

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      ..+.++++++++|+++++|+++||+++.+++++.+                           ++||.++|.+++.+++|+
T Consensus        14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a---------------------------~~Pe~~~k~lI~~~l~e~   66 (159)
T PRK06558         14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLT---------------------------EEPEKFGKALILQLLPGT   66 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------cCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999877776                           589999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q psy11193        151 IAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG  230 (340)
Q Consensus       151 laIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalA  230 (340)
                      ++|||+++++++..+++++  +++.+++.++++||++|+++++||++||+++++++++++||||+|+|+++..+|+|+++
T Consensus        67 ~aIyGlvva~li~~~i~~~--~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~a  144 (159)
T PRK06558         67 QGLYGFVIGFLIWQKITPE--LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYA  144 (159)
T ss_pred             HHHHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            9999999999999988653  78999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchH
Q psy11193        231 PYFLSLIKSCTTTFE  245 (340)
Q Consensus       231 IyGLVvaill~~~f~  245 (340)
                      ||||++++++...+|
T Consensus       145 I~glvvaill~~~~~  159 (159)
T PRK06558        145 ILAFVVSFLLLNGVK  159 (159)
T ss_pred             HHHHHHHHHHhccCC
Confidence            999999999876554

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=9.6e-29  Score=219.45  Aligned_cols=135  Identities=30%  Similarity=0.449  Sum_probs=127.3

Q ss_pred             chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHHH
Q psy11193          3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV   82 (340)
Q Consensus         3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~v   82 (340)
                      +++++++||+||++++|.+.+++..||||.++|.+++++|||+|+||||++++++..++++  ++++.+++.++++||++
T Consensus        24 aigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~--~~~~~~g~~~l~agL~v  101 (159)
T PRK06558         24 AVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP--ELSLAQGLAYFAACLPI  101 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999864  37789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11193         83 GFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI  162 (340)
Q Consensus        83 Gla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili  162 (340)
                      |+++++||++||+++++++++++|                           +||.+.|+++..+|+|+++|||||+++++
T Consensus       102 Gl~~l~sgi~~G~~~a~~~~a~a~---------------------------~pe~~~~~li~~~~~E~~aI~glvvaill  154 (159)
T PRK06558        102 AIVGLFSAISQGKVAAAGIQILAK---------------------------RPEEFTKGIILAAMVETYAILAFVVSFLL  154 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985                           77788899999999999999999999998


Q ss_pred             HhcC
Q psy11193        163 SGAV  166 (340)
Q Consensus       163 ~~~i  166 (340)
                      ..++
T Consensus       155 ~~~~  158 (159)
T PRK06558        155 LNGV  158 (159)
T ss_pred             hccC
Confidence            8764

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=5.6e-29  Score=217.49  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=120.3

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhc-----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVM-----RPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHL   76 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~-----~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l   76 (340)
                      .+++|+++|||||++++|++++|++.|     +||+|. .++++.+|+||+|||||++++++.      ++++.+++.+|
T Consensus        10 ~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~------~~s~~~g~~~l   82 (143)
T PRK06649         10 AALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG------VMSQTNPWLLL   82 (143)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh------hhhhhhHHHHH
Confidence            478899999999999999999999998     999998 999999999999999999999987      35688999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHH
Q psy11193         77 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGL  156 (340)
Q Consensus        77 ~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGL  156 (340)
                      ++||++|++++.||+.||+++++++++++                           ++||.++|.++..+|+|+++||+|
T Consensus        83 ~aGL~vGl~gl~Sa~~qG~v~aagi~~~a---------------------------k~p~~f~~~ii~~~~~Et~Al~~l  135 (143)
T PRK06649         83 GAGIGGGLAIAASAFAQGKAAAGACDALA---------------------------ETGKGFANYLLVLGLIETVALFVM  135 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988                           589999999999999999999999


Q ss_pred             HHHHHH
Q psy11193        157 VVAVLI  162 (340)
Q Consensus       157 Iiaili  162 (340)
                      ++++++
T Consensus       136 v~s~~~  141 (143)
T PRK06649        136 VFLMIF  141 (143)
T ss_pred             HHHHHH
Confidence            999876

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.96  E-value=3.1e-28  Score=212.62  Aligned_cols=130  Identities=22%  Similarity=0.315  Sum_probs=122.2

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA   81 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~   81 (340)
                      .+++++++||+||++++|++.+|++.|+||+++|.++.+++|+||+|||||++++++.+++++    ..+++..+++||+
T Consensus        11 ~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~----~~~~~~~l~aGL~   86 (141)
T PRK09621         11 LAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG----KLSALSGIAIGIS   86 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc----hhHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999988652    3589999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11193         82 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL  161 (340)
Q Consensus        82 vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiail  161 (340)
                      +|+++++||++||+++++++++++|                           +||.+.|.++...++|+++||+++++++
T Consensus        87 vGla~l~sgigqG~v~a~~i~a~ar---------------------------qPe~~~k~~i~~alvE~~ai~~lv~a~l  139 (141)
T PRK09621         87 VGIALLLSAIMQGKCCASAIQAYAR---------------------------SSEIYGKSFAAIGIVESFALFAFVFALL  139 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986                           7778888999999999999999999998


Q ss_pred             H
Q psy11193        162 I  162 (340)
Q Consensus       162 i  162 (340)
                      +
T Consensus       140 l  140 (141)
T PRK09621        140 L  140 (141)
T ss_pred             h
Confidence            6

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.95  E-value=1.3e-27  Score=211.84  Aligned_cols=143  Identities=29%  Similarity=0.482  Sum_probs=129.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA  152 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala  152 (340)
                      |..+++++++|+++++|++++|++|++++++.+                           ++||.++|++++..++|+++
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~---------------------------~~P~~~~~~li~~a~~~t~~   54 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVA---------------------------EDEKNFRNALILAGLPMTQT   54 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hCHHHHHHHHHHHHHHHHhH
Confidence            678999999999999999999999999877776                           68999999999999999999


Q ss_pred             HHHHHHHHHHHhc---C------CCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCc-chhHHHHHH
Q psy11193        153 IYGLVVAVLISGA---V------QEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILI  222 (340)
Q Consensus       153 IYGLIiaili~~~---i------~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqP-elf~kmlI~  222 (340)
                      |||+|+++++...   .      ++++.+++.+++.++++||++|+++++||++||+++++++++++||| |+|+++++.
T Consensus        55 IYGlvi~~~i~~~~~~~~~~~~~~~~~~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~  134 (157)
T PRK08344         55 IYGLITLFLILMYAGILGGGFKFAEPDTINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIIL  134 (157)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            9999998765322   2      12235678899999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q psy11193        223 LIFAEVLGPYFLSLIKSCTT  242 (340)
Q Consensus       223 ~af~EalAIyGLVvaill~~  242 (340)
                      .+|+|+++||+|++++++.+
T Consensus       135 ~a~~Ea~ai~~lvvallll~  154 (157)
T PRK08344        135 AAYAELMGIFGLVFAILGLS  154 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998765

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.95  E-value=4.9e-27  Score=205.09  Aligned_cols=137  Identities=18%  Similarity=0.262  Sum_probs=127.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA  152 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala  152 (340)
                      +.++++++++|+++++|+++++++|++++.+..                           ++||.+.|.++..++||+++
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~---------------------------e~p~~~~~~~i~~~lP~tq~   56 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMS---------------------------RIDEGHGKIIGLSAMPSSQS   56 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------cCchhhhhHHHHHHhHHHHH
Confidence            567899999999999999999999998766654                           69999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q psy11193        153 IYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY  232 (340)
Q Consensus       153 IYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIy  232 (340)
                      |||+|+++++.+++++.    ..+++..+++||++|+++++||++||+++++++++++||||.|+|+++..+++|+++||
T Consensus        57 IYG~ii~~li~~~~~~~----~~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~  132 (141)
T PRK09621         57 IYGLILMLLLNDAIKDG----KLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALF  132 (141)
T ss_pred             HHHHHHHHHHHHHcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887643    46789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy11193        233 FLSLIKSC  240 (340)
Q Consensus       233 GLVvaill  240 (340)
                      +|++++++
T Consensus       133 ~lv~a~ll  140 (141)
T PRK09621        133 AFVFALLL  140 (141)
T ss_pred             HHHHHHHh
Confidence            99999875

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.95  E-value=3.7e-27  Score=209.00  Aligned_cols=137  Identities=26%  Similarity=0.366  Sum_probs=123.3

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---c------CCCCccchhhH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA---V------QEPVKYPAYKG   72 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~---i------~~~~~~~~~~g   72 (340)
                      .+++++++||+||++++|++++++..||||.++|+++++++||||+|||||++|++...   +      ++++++++.++
T Consensus         9 la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~~~~l~~g   88 (157)
T PRK08344          9 LAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPDTINLGKA   88 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccccccchhHHHH
Confidence            36789999999999999999999999999999999999999999999999998777432   2      11234677899


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccch-hhhhhHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP-ELIMKSIIPVVMAGII  151 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P-~i~~k~II~~if~Eal  151 (340)
                      +.++++||++|+++++||++||+++++++++++|                           +| |+++|+++..+|+|++
T Consensus        89 ~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar---------------------------~P~~l~~~~ii~~a~~Ea~  141 (157)
T PRK08344         89 LALLGAGLLVGLAELLSAIPQGIICASGIGALPR---------------------------TPGKTFTQTIILAAYAELM  141 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------CcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999986                           66 8899999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy11193        152 AIYGLVVAVLISGA  165 (340)
Q Consensus       152 aIYGLIiaili~~~  165 (340)
                      +||++++++++.+-
T Consensus       142 ai~~lvvallll~~  155 (157)
T PRK08344        142 GIFGLVFAILGLSL  155 (157)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999997654

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.95  E-value=1e-26  Score=206.88  Aligned_cols=147  Identities=27%  Similarity=0.480  Sum_probs=134.3

Q ss_pred             chhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHH
Q psy11193         68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVM  147 (340)
Q Consensus        68 ~~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if  147 (340)
                      +...++..+++++++|++++++|+++|+++.+++++++|                           |||.+.+++++.++
T Consensus         5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar---------------------------~Pe~~~~~li~~al   57 (161)
T PRK14893          5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAE---------------------------DSDMFARGIIFSAL   57 (161)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------CchHHHHHHHHHHH
Confidence            455789999999999999999999999999999999885                           66677889999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC---CCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Q psy11193        148 AGIIAIYGLVVAVLISGAVQE---PVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI  224 (340)
Q Consensus       148 ~EalaIYGLIiaili~~~i~~---~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~a  224 (340)
                      +|+++|||+++++++..+.+.   ++..++.+++.++++||++|+++++||++||+++++++++++||||.|++++++.+
T Consensus        58 ~Ea~aIyglvia~lll~~~~~~~~~~~~~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~a  137 (161)
T PRK14893         58 PETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSA  137 (161)
T ss_pred             HHHHHHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999998774322   23567889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11193        225 FAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       225 f~EalAIyGLVvaill~  241 (340)
                      ++|+++||||++++++.
T Consensus       138 l~Et~~Iyglvv~~lll  154 (161)
T PRK14893        138 LPETQAIYGFLIAILLM  154 (161)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.93  E-value=7.1e-25  Score=191.77  Aligned_cols=140  Identities=21%  Similarity=0.319  Sum_probs=124.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA  152 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala  152 (340)
                      +.++++++++++++++|++++|++|.+++..+.++-.                      ..+||.+. .++....|.+++
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~----------------------~~~p~~f~-~lvl~~lP~Tqg   59 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYM----------------------QGKPAPFL-LIVFVGAPLTQT   59 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhh----------------------cCCchHHH-HHHHHhchhHHH
Confidence            5689999999999999999999999977666542000                      02788777 888888899999


Q ss_pred             HHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q psy11193        153 IYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY  232 (340)
Q Consensus       153 IYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIy  232 (340)
                      |||+|+++++..      +++..+++.++++||++|++++.||+.||+++++++++++||||.|+++++..+|+|++|||
T Consensus        60 iYG~vi~~~i~~------~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~  133 (143)
T PRK06649         60 IYGYILMNTLLG------VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALF  133 (143)
T ss_pred             HHHHHHHHHHHh------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999886      26788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy11193        233 FLSLIKSCT  241 (340)
Q Consensus       233 GLVvaill~  241 (340)
                      +||+++++.
T Consensus       134 ~lv~s~~~~  142 (143)
T PRK06649        134 VMVFLMIFK  142 (143)
T ss_pred             HHHHHHHHh
Confidence            999998763

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.93  E-value=7.3e-26  Score=189.98  Aligned_cols=99  Identities=81%  Similarity=1.230  Sum_probs=94.1

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA   81 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~   81 (340)
                      .+++|+++|||||++++|.+.+++..++||+++|+++|++|||+|+|||||++++++.++++++++++++|+.+|++||+
T Consensus         9 ~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~~~s~~~g~~~~~aGL~   88 (108)
T TIGR01100         9 AALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKSNYSLYKGFIHLGAGLA   88 (108)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999977656889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q psy11193         82 VGFSGLAAGFAIGIVGDAG  100 (340)
Q Consensus        82 vGla~l~SGi~~G~~g~a~  100 (340)
                      +|++++.||++||++|+++
T Consensus        89 vGl~~l~sgi~~Gi~G~~g  107 (108)
T TIGR01100        89 VGLSGLAAGFAIGIVGDAG  107 (108)
T ss_pred             HHHHHHHHHhhccccccCC
Confidence            9999999999999999975

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.92  E-value=1.8e-24  Score=199.97  Aligned_cols=135  Identities=30%  Similarity=0.491  Sum_probs=125.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHH
Q psy11193         75 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY  154 (340)
Q Consensus        75 ~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIY  154 (340)
                      .+++|+++|++++++|+++|.++.+++++++|                           |||.+.|++++.+++|+++||
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar---------------------------~Pe~~~~~li~~al~e~~~Iy   54 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAE---------------------------DPNKFGTAIVFQALPQTQGLY   54 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------CcHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999885                           777888999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHH
Q psy11193        155 GLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL  234 (340)
Q Consensus       155 GLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGL  234 (340)
                      |+++++++..+.++      .++|.++++||++|++++ |+++||+++++++++++||||.|+|+++.++++|+++||||
T Consensus        55 glvia~ll~~~~~~------~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGl  127 (213)
T PRK06271         55 GFLVAILILFVFKT------APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGL  127 (213)
T ss_pred             HHHHHHHHHhhccc------HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887532      378999999999999999 88999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q psy11193        235 SLIKSCTTT  243 (340)
Q Consensus       235 Vvaill~~~  243 (340)
                      ++++++...
T Consensus       128 Iva~ll~~~  136 (213)
T PRK06271        128 LVAILLLVG  136 (213)
T ss_pred             HHHHHHHHh
Confidence            999987753

>KOG0233|consensus

Probab=99.92  E-value=6.4e-26  Score=203.34  Aligned_cols=133  Identities=31%  Similarity=0.599  Sum_probs=125.1

Q ss_pred             hhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------ccchhhhHHHHhhh
Q psy11193        111 FVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPV------KYPAYKGFIHLGAG  184 (340)
Q Consensus       111 ~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~------~~s~~~g~~~lgAG  184 (340)
                      ++.+|++||+...|.++.++++|.|++.+|+++.++|||+++|||||+++++.+|+++.+      ..++.+|+..|++|
T Consensus        53 lSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~n~~~gy~lF~aG  132 (196)
T KOG0233|consen   53 LSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQNLYTGYALFGAG  132 (196)
T ss_pred             hhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccchhhhhHHHhhhh
Confidence            567789999999999999999999999999999999999999999999999999887642      35788999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193        185 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTT  243 (340)
Q Consensus       185 LavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~~  243 (340)
                      +.+|++++.+|++.|++|+.+..++|+||.+|+|.+++++|+.+++|||+++++++.++
T Consensus       133 l~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~K  191 (196)
T KOG0233|consen  133 LIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSK  191 (196)
T ss_pred             HHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999988753

>KOG0232|consensus

Probab=99.92  E-value=2.9e-25  Score=195.53  Aligned_cols=135  Identities=75%  Similarity=1.097  Sum_probs=129.3

Q ss_pred             chhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cchhhhHHHHhhhHH
Q psy11193        108 PRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK-YPAYKGFIHLGAGLA  186 (340)
Q Consensus       108 ~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~~-~s~~~g~~~lgAGLa  186 (340)
                      +++|+.+|++|||+|+|.+|+++++++||+.+|+++|++|+...+|||++++.++..++++..+ +++.+|+.++++|+.
T Consensus        17 a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~~~l~~g~i~lsagl~   96 (156)
T KOG0232|consen   17 AMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTAYSLFTGFIVLSAGLA   96 (156)
T ss_pred             HHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccccchhhHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999887633 789999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193        187 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTT  242 (340)
Q Consensus       187 vGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~  242 (340)
                      +|++++.+|+++|+++.++++..+|||++|..|++.++|.|.+++|||++++.+.+
T Consensus        97 vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~  152 (156)
T KOG0232|consen   97 VGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLT  152 (156)
T ss_pred             hhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999998764

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.91  E-value=6.3e-24  Score=189.12  Aligned_cols=135  Identities=26%  Similarity=0.474  Sum_probs=123.2

Q ss_pred             chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccchhhHHHHHHhH
Q psy11193          3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV---QEPVKYPAYKGFIHLGAG   79 (340)
Q Consensus         3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i---~~~~~~~~~~g~~~l~Ag   79 (340)
                      +++++++|+++|+++++.+.+++..||||.++|++++.++||+|+|||+++++++..+.   ++++.+++.+++.++++|
T Consensus        18 a~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~~~~~~~~~lgag   97 (161)
T PRK14893         18 AVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAG   97 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999998743   223456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193         80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA  159 (340)
Q Consensus        80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia  159 (340)
                      |++|+++++||++||+++++++++++|                           +||.+.|.++..+++|+++||||+++
T Consensus        98 L~~Gla~~gsgig~G~~~~a~i~~iar---------------------------~Pe~~~~~li~~al~Et~~Iyglvv~  150 (161)
T PRK14893         98 AAIGFAGLGSGMGQGIASASSVGAVVE---------------------------DPDMFARGIIFSALPETQAIYGFLIA  150 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999985                           77778889999999999999999999


Q ss_pred             HHHHh
Q psy11193        160 VLISG  164 (340)
Q Consensus       160 ili~~  164 (340)
                      +++..
T Consensus       151 ~lll~  155 (161)
T PRK14893        151 ILLMV  155 (161)
T ss_pred             HHHHH
Confidence            98754

>KOG0232|consensus

Probab=99.90  E-value=3.4e-24  Score=188.80  Aligned_cols=138  Identities=64%  Similarity=1.014  Sum_probs=128.1

Q ss_pred             CcchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhHHHHHHhH
Q psy11193          1 MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK-YPAYKGFIHLGAG   79 (340)
Q Consensus         1 ~~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~-~~~~~g~~~l~Ag   79 (340)
                      ++++.++++|++|||.++|.+++.+..++||+.+|+++|++|++..+|||+++++++..++++..+ |++++|+.++++|
T Consensus        15 ~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~~~l~~g~i~lsag   94 (156)
T KOG0232|consen   15 AAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTAYSLFTGFIVLSAG   94 (156)
T ss_pred             HHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccccchhhHHHHHHHH
Confidence            367899999999999999999999999999999999999999999999999999999999987644 7899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193         80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA  159 (340)
Q Consensus        80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia  159 (340)
                      +.+|++++.+|+++|++++++++..+|||..                           +..+++..+|.|++++||||++
T Consensus        95 l~vgl~~~~ag~aigi~gd~gvr~~~qQPr~---------------------------fv~~iLiLif~evlGLygLiva  147 (156)
T KOG0232|consen   95 LAVGLAGLSAGLAIGIVGDAGVRGRAQQPRL---------------------------FVGMILILIFAEVLGLYGLIVA  147 (156)
T ss_pred             HHhhhcccCCCcCcCccccccchhhhcCchh---------------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999986654                           4446999999999999999999


Q ss_pred             HHHHhc
Q psy11193        160 VLISGA  165 (340)
Q Consensus       160 ili~~~  165 (340)
                      ..+..+
T Consensus       148 ~~l~~~  153 (156)
T KOG0232|consen  148 LALLTV  153 (156)
T ss_pred             HhccCC
Confidence            988765

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.85  E-value=9.7e-22  Score=165.14  Aligned_cols=96  Identities=83%  Similarity=1.278  Sum_probs=85.6

Q ss_pred             hhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHH
Q psy11193        110 LFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF  189 (340)
Q Consensus       110 ~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGl  189 (340)
                      .|+++|++||++++|.+++++++++||.++|+++|++|||+++|||+|+++++..++++++++++.+|+.+|++||++|+
T Consensus        12 ~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~~~s~~~g~~~~~aGL~vGl   91 (108)
T TIGR01100        12 VFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKSNYSLYKGFIHLGAGLAVGL   91 (108)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHH
Confidence            45566666777777777788888999999999999999999999999999999999876555789999999999999999


Q ss_pred             HHhHHHHHHHHHHHHH
Q psy11193        190 SGLAAGFAIGIVGDAG  205 (340)
Q Consensus       190 a~lgSGigqG~~~aaa  205 (340)
                      +++.||++||++++++
T Consensus        92 ~~l~sgi~~Gi~G~~g  107 (108)
T TIGR01100        92 SGLAAGFAIGIVGDAG  107 (108)
T ss_pred             HHHHHHhhccccccCC
Confidence            9999999999999875

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>KOG0233|consensus

Probab=99.84  E-value=5.3e-22  Score=178.25  Aligned_cols=140  Identities=30%  Similarity=0.593  Sum_probs=128.6

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC---Cc---cchhhHHHH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEP---VK---YPAYKGFIH   75 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~---~~---~~~~~g~~~   75 (340)
                      .++.|+.+|+|||+...|++..|..+|.|+..+|+|+.++|||+.+|||+|+++++++|+++-   +.   .++++|+..
T Consensus        49 l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~n~~~gy~l  128 (196)
T KOG0233|consen   49 LCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQNLYTGYAL  128 (196)
T ss_pred             HhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccchhhhhHHH
Confidence            467899999999999999999999999999999999999999999999999999999988642   22   357899999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHH
Q psy11193         76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG  155 (340)
Q Consensus        76 l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYG  155 (340)
                      |++|+.+|++++.+|+++|++|+++.-+.|                           ++|.+|.|.++..+|..+++++|
T Consensus       129 F~aGl~vG~~nl~cglavGIigs~aalaDA---------------------------~n~tLFvKilivEIfgSaiGLfG  181 (196)
T KOG0233|consen  129 FGAGLIVGLCNLVCGLAVGIIGSGAALADA---------------------------ANPTLFVKILIVEIFGSAIGLFG  181 (196)
T ss_pred             hhhhHHHHHHHHHhhhhhhhhchhhhhhcc---------------------------cCccceeeeehhhhHHHHHHHHH
Confidence            999999999999999999999999877777                           48899999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy11193        156 LVVAVLISGAVQE  168 (340)
Q Consensus       156 LIiaili~~~i~~  168 (340)
                      ||+.+++.+|.+.
T Consensus       182 lIvgi~ms~KA~~  194 (196)
T KOG0233|consen  182 LIVGIVMSSKASM  194 (196)
T ss_pred             HHHHhhccccccc
Confidence            9999999988654

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.56  E-value=1.3e-14  Score=115.96  Aligned_cols=70  Identities=41%  Similarity=0.596  Sum_probs=66.5

Q ss_pred             hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q psy11193        176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFE  245 (340)
Q Consensus       176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~  245 (340)
                      +++.++++||++|++++++|++||.+++++++++|||||    +|+++++..+++|+++||+|++++++..+.|
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~   79 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP   79 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999999999999999999999    9999999999999999999999998875543

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.52  E-value=6.9e-14  Score=107.41  Aligned_cols=65  Identities=37%  Similarity=0.560  Sum_probs=62.4

Q ss_pred             HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193        178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTT  242 (340)
Q Consensus       178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~  242 (340)
                      +.++++|+++|+++++||+++|.++++++++++||||+++++++..+++|+++||||++++++..
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~   65 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLF   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.50  E-value=7.4e-14  Score=112.24  Aligned_cols=73  Identities=27%  Similarity=0.386  Sum_probs=66.7

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY  246 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~  246 (340)
                      ...+++.+++|+++|++++++|++||.++++++++++||||    +++++++..+++|+++||+|++++++.-.-|+
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~   80 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45667899999999999999999999999999999999998    56779999999999999999999988866664

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.48  E-value=3.1e-13  Score=112.91  Aligned_cols=70  Identities=24%  Similarity=0.399  Sum_probs=65.8

Q ss_pred             cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      .....+..++++|+++|+++++||++||+++++++++++||||.++++++..+++|+++||||++++++.
T Consensus        29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLl   98 (102)
T PRK06251         29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLML   98 (102)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677899999999999999999999999999999999999999999999999999999999999865

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.46  E-value=2.5e-13  Score=110.36  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q psy11193        172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTTFEYL  247 (340)
Q Consensus       172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~f~~~  247 (340)
                      .+...+...+++|+++|++++++|++||.++++++++++||||.    +++|++..+++|+++||+|++++++.-+.|+.
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~~   82 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPFW   82 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999985    78999999999999999999999988777864

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.46  E-value=3e-13  Score=108.64  Aligned_cols=70  Identities=27%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTT  243 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~  243 (340)
                      +..+++++++|+++|++++++|++||.++++++++++||||.    +++|++..+++|+++||+|++++++.-.
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456779999999999999999999999999999999999995    7778999999999999999999987643

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.45  E-value=3.6e-13  Score=108.55  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193        173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTTFEY  246 (340)
Q Consensus       173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~f~~  246 (340)
                      +..++...+++|+++|++++++|++||.++++++++++||||.    +++|++..+++|+++||+|++++++.-+-|+
T Consensus         3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~   80 (82)
T PRK13468          3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF   80 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4567889999999999999999999999999999999999985    5688888999999999999999987765564

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.44  E-value=5.1e-13  Score=106.77  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTT  243 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~  243 (340)
                      +..+...+++|+++|++++++|++||.++++++++++||||    +++++++..+++|+++||+|++++++.-.
T Consensus         3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567899999999999999999999999999999999998    46699999999999999999999987643

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.43  E-value=6.4e-13  Score=106.22  Aligned_cols=72  Identities=43%  Similarity=0.690  Sum_probs=68.3

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      +++.++++||++|++++++|++||+++++++++++|||+                       ..|++++|+++..+|+|+
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~-----------------------~~~~l~~~~~i~~~l~E~   62 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE-----------------------AAGKLFGKMFIGLALVEA   62 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-----------------------hhhhHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999887                       477899999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy11193        151 IAIYGLVVAVLISGA  165 (340)
Q Consensus       151 laIYGLIiaili~~~  165 (340)
                      ++||+|++++++..+
T Consensus        63 ~~i~~lvialll~f~   77 (79)
T COG0636          63 LGIYGLVIALLLLFA   77 (79)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998765

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.40  E-value=1.2e-12  Score=104.65  Aligned_cols=67  Identities=30%  Similarity=0.455  Sum_probs=62.3

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      +..++.++++|+++ ++++++|++||.++++++++++||||    +++++++..+++|+++|||+++++++.
T Consensus         6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~ill   76 (79)
T PRK13469          6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILL   76 (79)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999 99999999999999999999999998    677779999999999999999998765

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.39  E-value=1.6e-12  Score=105.45  Aligned_cols=68  Identities=26%  Similarity=0.334  Sum_probs=62.9

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ...+.+++++|+++|++++++|+++|.++++++++++||||.    +++++++.+++|+++||++++++++.
T Consensus        11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lll   82 (85)
T PRK13471         11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLIL   82 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999996    45889999999999999999998765

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.36  E-value=3.7e-12  Score=97.81  Aligned_cols=66  Identities=39%  Similarity=0.636  Sum_probs=61.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA  152 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala  152 (340)
                      |.++++|+++|+++++||+++|+++++++++++                           ++||+++|.+++.+|+|+++
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a---------------------------~~p~~~~~~li~~~~~E~~~   53 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIA---------------------------RQPELFTKMLIGAAFIEALG   53 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HSGGHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hccccchhhhhhHHHHHHHH
Confidence            578999999999999999999999999988887                           58889999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy11193        153 IYGLVVAVLISGA  165 (340)
Q Consensus       153 IYGLIiaili~~~  165 (340)
                      ||++++++++.++
T Consensus        54 i~glv~~~~l~~~   66 (66)
T PF00137_consen   54 IYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.34  E-value=4.1e-12  Score=106.69  Aligned_cols=74  Identities=24%  Similarity=0.390  Sum_probs=67.6

Q ss_pred             chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193        173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY  246 (340)
Q Consensus       173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~  246 (340)
                      +...+...+++|+++|++++++|++||.+.++++++++||||    +++++++..+++|+++||++++++++.-.-|+
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~  103 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            456778999999999999999999999999999999999998    56779999999999999999999988766664

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.33  E-value=5.8e-12  Score=99.83  Aligned_cols=66  Identities=21%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             hhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        175 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       175 ~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ..+.+.+++|+++ ++++++|+++|.++++++++++||||    +++++++..+++|+++||++++++++.
T Consensus         3 ~~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lll   72 (74)
T PRK07558          3 AEALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLL   72 (74)
T ss_pred             HhHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999 99999999999999999999999999    899999999999999999999998764

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.33  E-value=5.9e-12  Score=105.05  Aligned_cols=72  Identities=17%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q psy11193        176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEYL  247 (340)
Q Consensus       176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~~  247 (340)
                      .+...+++|+++|++++++|+++|.+.++++++++||||    ++++|++..++.|+++||++++++++.-..|+.
T Consensus        12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~   87 (101)
T PRK13464         12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLA   87 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            467899999999999999999999999999999999998    699999999999999999999999999888876

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.32  E-value=6.8e-12  Score=100.94  Aligned_cols=73  Identities=29%  Similarity=0.463  Sum_probs=67.9

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHH
Q psy11193         70 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAG  149 (340)
Q Consensus        70 ~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~E  149 (340)
                      ..++.++++|+++|++++++|++||+++++++++++|||+                       ..+++++++++..++.|
T Consensus         5 ~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe-----------------------~~~~l~~~~~i~~al~E   61 (81)
T CHL00061          5 ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE-----------------------AEGKIRGTLLLSLAFME   61 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------------------HhhhHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999998                       46788999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy11193        150 IIAIYGLVVAVLISGA  165 (340)
Q Consensus       150 alaIYGLIiaili~~~  165 (340)
                      +.+||+|++++++...
T Consensus        62 a~aiy~lvvalillf~   77 (81)
T CHL00061         62 ALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998765

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.32  E-value=7.3e-12  Score=100.63  Aligned_cols=74  Identities=27%  Similarity=0.423  Sum_probs=68.0

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +.+++.++++||++|++++++|++||+++++++++++|||+                       ..+++++++++..+++
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe-----------------------~~~~~~~~~~i~~al~   60 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPE-----------------------AEGKIRGTLLLSLAFM   60 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------------------HhhhhHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999998                       4678889999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+++||++++++++...
T Consensus        61 Ea~ai~~lvvallllf~   77 (81)
T PRK07354         61 ESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999997654

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.26  E-value=2.3e-11  Score=97.14  Aligned_cols=67  Identities=27%  Similarity=0.335  Sum_probs=62.9

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      +..+.+.+++|+++ ++.+++|+++|.+.++.+++++||||    ++++|++..++.|+++||++++++++.
T Consensus         4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lll   74 (77)
T MTH00222          4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLIL   74 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999 99999999999999999999999998    699999999999999999999998764

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.26  E-value=4.7e-11  Score=99.54  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=59.3

Q ss_pred             HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      +..+++|+++ ++++++|++||.++++++++++||||    +++++++..+++|+++||+|++++++.
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lll   97 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILI   97 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999 99999999999999999999999998    477899999999999999999998765

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.26  E-value=2.5e-11  Score=97.92  Aligned_cols=75  Identities=27%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             chhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHH
Q psy11193         68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVM  147 (340)
Q Consensus        68 ~~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if  147 (340)
                      ++.++..++++|+++|++++++|++||.++++++++++|||+                       ..+++++.+++..++
T Consensus         3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe-----------------------~~g~l~~~m~ig~al   59 (82)
T PRK13468          3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPD-----------------------AAGTISRTLFVGLAM   59 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999998                       467888889999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q psy11193        148 AGIIAIYGLVVAVLISGA  165 (340)
Q Consensus       148 ~EalaIYGLIiaili~~~  165 (340)
                      +|+++||++++++++...
T Consensus        60 ~E~~ai~alviallllfa   77 (82)
T PRK13468         60 IESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999987654

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.25  E-value=2.8e-11  Score=96.88  Aligned_cols=72  Identities=31%  Similarity=0.567  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +..++.++++||++ ++++++|+++|.++++++++++|||+                       ..+++++.+++..+++
T Consensus         6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe-----------------------~~g~l~~~~~i~~al~   61 (79)
T PRK13469          6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPE-----------------------ASGKIMSTMLLGAALA   61 (79)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCch-----------------------HHHhHHHHHHHHHHHH
Confidence            45788999999999 99999999999999999999999998                       4678889999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11193        149 GIIAIYGLVVAVLISG  164 (340)
Q Consensus       149 EalaIYGLIiaili~~  164 (340)
                      |+++||++++++++..
T Consensus        62 Eal~i~glvva~illf   77 (79)
T PRK13469         62 EATAIYGLVIAIILLF   77 (79)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.25  E-value=3.3e-11  Score=96.44  Aligned_cols=73  Identities=32%  Similarity=0.507  Sum_probs=67.8

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHH
Q psy11193         70 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAG  149 (340)
Q Consensus        70 ~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~E  149 (340)
                      ..+..++++|+++|++++++|+++|.++++++++++|||+                       ..+++++++++...++|
T Consensus         4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe-----------------------~~~~l~~~~~ig~Al~E   60 (78)
T PRK06876          4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPE-----------------------LIPMLQTKMFIGAGLVD   60 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHhHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999999                       47789999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy11193        150 IIAIYGLVVAVLISGA  165 (340)
Q Consensus       150 alaIYGLIiaili~~~  165 (340)
                      +.+||+|++++++...
T Consensus        61 a~~i~~lvva~illf~   76 (78)
T PRK06876         61 AIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987654

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.25  E-value=2.4e-11  Score=98.85  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=68.6

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +..++.++++|+++|++++++|++||+++++++++++|||+                       ..+++.+.+++...++
T Consensus         5 ~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe-----------------------~~~~i~~~m~ig~Alv   61 (86)
T TIGR03322         5 IIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPD-----------------------ASNTITRTLFVGLAMI   61 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999998                       4788889999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+++||++++++++...
T Consensus        62 Ea~ai~alvia~lllf~   78 (86)
T TIGR03322        62 ESTAIYCFVVSMILIFA   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999997655

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.23  E-value=4.5e-11  Score=97.05  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=67.9

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ...+..++++|+++|++++++|+++|.++++++++++|||+                       ..+++++++++...++
T Consensus        11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe-----------------------~~g~l~~~~~ig~aL~   67 (85)
T PRK13471         11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPE-----------------------MVGTITTRMLLADAVA   67 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChH-----------------------HHhhHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999998                       4688999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+++||++++++++...
T Consensus        68 Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         68 ETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987653

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.21  E-value=4.7e-11  Score=92.85  Aligned_cols=58  Identities=26%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193        183 AGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSC  240 (340)
Q Consensus       183 AGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill  240 (340)
                      .++++|++++++|+++|.+.++++++++||||    ++++|++..++.|+++||++++++++
T Consensus         4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35888999999999999999999999999998    69999999999999999999999874

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.21  E-value=9.3e-11  Score=98.11  Aligned_cols=69  Identities=35%  Similarity=0.542  Sum_probs=63.2

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ...+..++++|+++|+++++||++||+++++++++++|                           +||.+.+.++..+++
T Consensus        31 ~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr---------------------------~Pe~~g~~ii~~al~   83 (102)
T PRK06251         31 QGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTE---------------------------RRDMFGTVLIFVAIG   83 (102)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------ChHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999985                           777788899999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11193        149 GIIAIYGLVVAVLISG  164 (340)
Q Consensus       149 EalaIYGLIiaili~~  164 (340)
                      |+++|||+++++++..
T Consensus        84 Ea~aIyglvVa~lLlf   99 (102)
T PRK06251         84 EGIAVYGILFAVLMLF   99 (102)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999764

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.19  E-value=6.5e-11  Score=92.08  Aligned_cols=56  Identities=23%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193        185 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSC  240 (340)
Q Consensus       185 LavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill  240 (340)
                      +++|++++++|+++|.+.++++++++||||    +++.|++..++.|+++||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566788899999999999999999999998    69999999999999999999999875

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.19  E-value=1e-10  Score=94.31  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=61.9

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ...+...+++|+++|++++++|+++|.+.++++++++||||    ++++|++..++.|++.+|++++.++..
T Consensus         4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~   75 (81)
T PRK05880          4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFV   75 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667899999999999999999999999999999999998    699999999999999998888777644

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.11  E-value=2.5e-10  Score=91.85  Aligned_cols=64  Identities=28%  Similarity=0.402  Sum_probs=55.3

Q ss_pred             cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11193        172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKS  239 (340)
Q Consensus       172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvail  239 (340)
                      .+...+.+.+++    |++++++|+++|.++++++++++||||    +++.|++..++.|+++||+|+++++
T Consensus        12 ~~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         12 ETTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566655555    556689999999999999999999998    6899999999999999999999986

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.10  E-value=3.3e-10  Score=95.24  Aligned_cols=74  Identities=28%  Similarity=0.485  Sum_probs=69.2

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ...+..++++|+++|++++++|++||.+++.++++++|||+                       ..+++++++++...++
T Consensus        27 ~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe-----------------------~~~~i~~~~~ig~Al~   83 (105)
T PRK08482         27 MIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPG-----------------------LGGKLMTTMFIALAMI   83 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999                       5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+.+||++++++++...
T Consensus        84 Ea~~i~alvia~illf~  100 (105)
T PRK08482         84 EAQVIYALVIALIALYA  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998765

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.09  E-value=4.2e-10  Score=89.26  Aligned_cols=70  Identities=20%  Similarity=0.330  Sum_probs=65.3

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      .+...+++|+++ ++++++|+++|.++++++++++|||+                       ..+++++++++...+.|+
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe-----------------------~~~~l~~~~~ig~Al~Ea   59 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPS-----------------------AADSQFGYLLIGAALAEA   59 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCch-----------------------HHHhHHHHHHHHHHHHHH
Confidence            467889999999 99999999999999999999999998                       478999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11193        151 IAIYGLVVAVLISG  164 (340)
Q Consensus       151 laIYGLIiaili~~  164 (340)
                      .+||++++++++..
T Consensus        60 ~~i~alvva~lllf   73 (74)
T PRK07558         60 LGIFSFLIALLLLF   73 (74)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.07  E-value=2.5e-10  Score=86.67  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             HhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        191 GLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       191 ~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ++++|+++|.++++++++++||||.    +++|++..+++|+++||++++++++.
T Consensus         2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lll   56 (58)
T TIGR01260         2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILL   56 (58)
T ss_pred             cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999985    99999999999999999999998764

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.05  E-value=7.5e-10  Score=88.49  Aligned_cols=73  Identities=25%  Similarity=0.373  Sum_probs=67.5

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ..++...+++|+++ ++++++|+++|.+.++.+++++|||+                       ..+++++++++...+.
T Consensus         4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe-----------------------~~~~l~~~~~ig~Al~   59 (77)
T MTH00222          4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPS-----------------------LKQQLFTYAILGFAIS   59 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChh-----------------------hHHhHHHHHHHHHHHH
Confidence            34677899999999 99999999999999999999999999                       5889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+.+||++++++++...
T Consensus        60 Ea~~i~~lvia~lllfa   76 (77)
T MTH00222         60 EAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987653

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.03  E-value=9.4e-10  Score=91.93  Aligned_cols=72  Identities=19%  Similarity=0.394  Sum_probs=68.1

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      .+...+++|+.+|++++++|+++|.+.++.+++++|||+                       ..+++++++++...+.|+
T Consensus        12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPE-----------------------a~~~l~t~m~IG~AliEa   68 (101)
T PRK13464         12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPE-----------------------LGGMLLGRMFIVAAFVDA   68 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999                       588999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy11193        151 IAIYGLVVAVLISGA  165 (340)
Q Consensus       151 laIYGLIiaili~~~  165 (340)
                      .+||++++++++...
T Consensus        69 ~ai~alvia~lllFa   83 (101)
T PRK13464         69 FAAISIAIGFLVLYA   83 (101)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998776

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.02  E-value=9.7e-10  Score=91.76  Aligned_cols=70  Identities=23%  Similarity=0.333  Sum_probs=64.7

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      .++.++++||++ ++++++|++||.++++++++++|||+                       ..+++++.+++..+++|+
T Consensus        29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPe-----------------------a~~~l~~~~~ig~Al~Ea   84 (100)
T PRK07159         29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPE-----------------------AQKQVFKLLFIGSAISET   84 (100)
T ss_pred             hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChH-----------------------HHHhHHHHHHHHHHHHHH
Confidence            336899999999 99999999999999999999999998                       478899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11193        151 IAIYGLVVAVLISG  164 (340)
Q Consensus       151 laIYGLIiaili~~  164 (340)
                      .+||++++++++..
T Consensus        85 laI~~lvia~lllf   98 (100)
T PRK07159         85 SSIYALLVAFILIF   98 (100)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=98.99  E-value=2.1e-09  Score=86.70  Aligned_cols=74  Identities=24%  Similarity=0.316  Sum_probs=66.9

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ...+..++++|+++|++++++|+++|.+.++++++++|||+                       ..+++++++++...++
T Consensus         4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPE-----------------------a~~~l~~~m~iG~Al~   60 (81)
T PRK05880          4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPE-----------------------AQGRLFTPFFITVGLV   60 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999                       5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+..+|.+.+.+++...
T Consensus        61 Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880         61 EAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999988888776543

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=98.98  E-value=1.5e-09  Score=84.50  Aligned_cols=61  Identities=21%  Similarity=0.347  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy11193         79 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV  158 (340)
Q Consensus        79 gL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIi  158 (340)
                      ++++|++++++|+++|.+.+.++++++|||+                       ..+++++.+++...+.|+.+||++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPe-----------------------a~~~l~~~~~ig~al~Ea~~i~alvi   61 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPE-----------------------MQSKLMAGVFLGVAFIEGTFFVTLAM   61 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999999999999999                       58899999999999999999999999


Q ss_pred             HHHH
Q psy11193        159 AVLI  162 (340)
Q Consensus       159 aili  162 (340)
                      ++++
T Consensus        62 a~l~   65 (66)
T PRK13466         62 TFVL   65 (66)
T ss_pred             HHHh
Confidence            9874

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=98.92  E-value=3.2e-09  Score=82.68  Aligned_cols=60  Identities=20%  Similarity=0.264  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193         80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA  159 (340)
Q Consensus        80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia  159 (340)
                      +..|++++++|+++|.+.+.++++++|||+                       ..+++++.+++...+.|+.+||+++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE-----------------------~~~~i~~~m~ig~Al~Ea~~i~~lvia   62 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPE-----------------------MIGQLRSLMILGVAFIEGTFFVTLVMS   62 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566788899999999999999999999999                       478999999999999999999999999


Q ss_pred             HHH
Q psy11193        160 VLI  162 (340)
Q Consensus       160 ili  162 (340)
                      +++
T Consensus        63 ~il   65 (66)
T PRK13467         63 FIL   65 (66)
T ss_pred             HHh
Confidence            985

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=98.83  E-value=1e-08  Score=82.64  Aligned_cols=66  Identities=27%  Similarity=0.551  Sum_probs=58.0

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      ...+...+++    |++++++|+++|.+..+++++++|||+                       ..+++++.+++..++.
T Consensus        14 ~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPE-----------------------a~~~l~~~m~lG~Al~   66 (80)
T PRK07874         14 TFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPE-----------------------MAGQLRTTMFLGIAFV   66 (80)
T ss_pred             HHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHh-----------------------HHHhHHHHHHHHHHHH
Confidence            4556655555    566689999999999999999999999                       5789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy11193        149 GIIAIYGLVVAVL  161 (340)
Q Consensus       149 EalaIYGLIiail  161 (340)
                      |+.+||+++++++
T Consensus        67 Ea~~i~~lvia~l   79 (80)
T PRK07874         67 EALALIGLVAGFL   79 (80)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999986

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=98.72  E-value=1.7e-08  Score=76.72  Aligned_cols=56  Identities=25%  Similarity=0.446  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193         86 GLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISG  164 (340)
Q Consensus        86 ~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~  164 (340)
                      ++++|+++|.++++++++++|||+                       .++++++.+++..++.|+.+||++++++++..
T Consensus         2 a~GagiG~G~i~~~a~~~iaRqPe-----------------------~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf   57 (58)
T TIGR01260         2 AIGAAIGIGILGGKFLESAARQPE-----------------------LKPLLRTTMFIGMGLVDAIPMIAVVIALILLF   57 (58)
T ss_pred             cchhHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999998                       57899999999999999999999999998753

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>KOG3025|consensus

Probab=97.38  E-value=0.00036  Score=60.36  Aligned_cols=68  Identities=26%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      .+.++.++++||.+. ++-.++|.++|.+-++-+.+.+|||.    +|...+++.++.|+.++|-|.++|++.
T Consensus        63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflil  134 (137)
T KOG3025|consen   63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL  134 (137)
T ss_pred             HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            356778899999876 77888999999999999999999996    699999999999999999999999875

>KOG3025|consensus

Probab=96.08  E-value=0.011  Score=51.43  Aligned_cols=72  Identities=25%  Similarity=0.350  Sum_probs=63.1

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +.+.-.+++||.+. ++-.+||.++|.+-.+-+.+.+|+|-                       -++++|...++..++.
T Consensus        64 i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnps-----------------------lk~~lfs~ailgfals  119 (137)
T KOG3025|consen   64 IDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS-----------------------LKQQLFSYAILGFALS  119 (137)
T ss_pred             HHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCch-----------------------HHHHHHHHHHHHHHHH
Confidence            45778899999874 66667889999999999999999996                       4899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11193        149 GIIAIYGLVVAVLISG  164 (340)
Q Consensus       149 EalaIYGLIiaili~~  164 (340)
                      |+.++|.|.++|++..
T Consensus       120 ea~glfclm~aflilf  135 (137)
T KOG3025|consen  120 EAMGLFCLMVAFLILF  135 (137)
T ss_pred             HHHhHHHHHHHHHHHh
Confidence            9999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	5e-32
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	1e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score =  116 bits (292), Expect = 5e-32
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 111 FVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPV 170
           F  +G+A G    G   AA++  +PE   +++I  ++ G   +YG V+A LI   +    
Sbjct: 25  FSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD- 83

Query: 171 KYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 230
                +G   LGA L + F+GL +G A G V  AG++  A++P      I+     E   
Sbjct: 84  -MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYA 142

Query: 231 PY 232
             
Sbjct: 143 IL 144

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score =  104 bits (262), Expect = 1e-27
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 29/156 (18%)

Query: 8   ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKY 67
            +G+A G    G   AA++  +PE   +++I  ++ G   +YG V+A LI   +      
Sbjct: 27  GIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD--M 84

Query: 68  PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGI 127
              +G   LGA L + F+GL +G A G V  AG++  A++P                   
Sbjct: 85  SVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHAT--------------- 129

Query: 128 AAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIS 163
                       K II   M    AI G V++ L+ 
Sbjct: 130 ------------KGIIFAAMVETYAILGFVISFLLV 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 40/325 (12%), Positives = 87/325 (26%), Gaps = 115/325 (35%)

Query: 35  KSIIPVVMAGIIA------IYGLVVAVLISGAVQEPVKYP-------------------A 69
           K I+ V     +       +  +  ++L    +   +                       
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 70  YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFV-ALGAAYGTAKAGTGIA 128
            + F+     L + +  L +            R  +   R+++      Y   +     A
Sbjct: 79  VQKFV--EEVLRINYKFLMSPIK------TEQRQPSMMTRMYIEQRDRLYNDNQV---FA 127

Query: 129 AMSVMRPELIMK------SIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLG 182
             +V R +  +K       + P   A  + I G+                        LG
Sbjct: 128 KYNVSRLQPYLKLRQALLELRP---AKNVLIDGV------------------------LG 160

Query: 183 AGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTT 242
           +G       +A                  Q ++   +            ++L+L K+C +
Sbjct: 161 SGKTW----VAL---------DVCLSYKVQCKMDFKI------------FWLNL-KNCNS 194

Query: 243 TFEYLLAISLFFHCLFP-----SNIIYNQSHEFSWVRD---RHFAKKKKQ----VL---K 287
               L  +    + + P     S+   N       ++    R    K  +    VL   +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 288 NPNISSYFHILWRMC-IIINMMDKS 311
           N    + F++    C I++    K 
Sbjct: 255 NAKAWNAFNL---SCKILLTTRFKQ 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.96
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.96
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.58
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.52
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.5
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.49
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.47
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.46
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.41
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.38
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.37
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.36
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.34
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.23
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.21
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	98.9

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.96  E-value=2.3e-29  Score=221.43  Aligned_cols=142  Identities=27%  Similarity=0.388  Sum_probs=134.0

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      ..+.++++++++|+++++|++++|++|++++++.+                           ++||.++|++++++|+|+
T Consensus        12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~---------------------------~~P~~~~k~li~~~l~e~   64 (156)
T 2bl2_A           12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTT---------------------------SQPEKFGQALILQLLPGT   64 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------------TCGGGHHHHHHHHHGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hCcHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999998776665                           699999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q psy11193        151 IAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG  230 (340)
Q Consensus       151 laIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalA  230 (340)
                      ++|||||+++++..+++++  +++.+++.++++||++|++++++|++||+++++++++++||||+++|+++..+|+|+++
T Consensus        65 ~~IYGlvva~li~~~l~~~--~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~a  142 (156)
T 2bl2_A           65 QGLYGFVIAFLIFINLGSD--MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYA  142 (156)
T ss_dssp             HHHHHHHHHHHHHHTCCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999999998753  67899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy11193        231 PYFLSLIKSCT  241 (340)
Q Consensus       231 IyGLVvaill~  241 (340)
                      ||+|++++++.
T Consensus       143 i~glvia~ll~  153 (156)
T 2bl2_A          143 ILGFVISFLLV  153 (156)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.96  E-value=3.8e-29  Score=220.08  Aligned_cols=135  Identities=31%  Similarity=0.505  Sum_probs=126.6

Q ss_pred             cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193          2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA   81 (340)
Q Consensus         2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~   81 (340)
                      .+++++++||+||++++|++++++.+||||+++|++++++|||+|+|||||+++++..++++  ++++.+++.++++||+
T Consensus        21 la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~--~~~~~~g~~~igagl~   98 (156)
T 2bl2_A           21 TATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGS--DMSVVQGLNFLGASLP   98 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCT--TCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999875  3678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11193         82 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL  161 (340)
Q Consensus        82 vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiail  161 (340)
                      +|++++++|++||+++++++++++|                           +||.+.|+++..+|+|+++||+|+++++
T Consensus        99 ~Gla~lgagigiG~v~~~~i~a~ar---------------------------qPe~~~~~ii~~a~~Ea~ai~glvia~l  151 (156)
T 2bl2_A           99 IAFTGLFSGIAQGKVAAAGIQILAK---------------------------KPEHATKGIIFAAMVETYAILGFVISFL  151 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------CGGGHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999985                           6777788999999999999999999999


Q ss_pred             HHhc
Q psy11193        162 ISGA  165 (340)
Q Consensus       162 i~~~  165 (340)
                      +..+
T Consensus       152 l~~~  155 (156)
T 2bl2_A          152 LVLN  155 (156)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8653

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.58  E-value=4.1e-15  Score=118.26  Aligned_cols=74  Identities=26%  Similarity=0.330  Sum_probs=69.0

Q ss_pred             chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193        173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY  246 (340)
Q Consensus       173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~  246 (340)
                      ++.+++.++++|+++|++++++|++||.++++++++++||||    +|+++++..+++|+++||+|++++++....|.
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~   81 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF   81 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467899999999999999999999999999999999999999    57889999999999999999999998876664

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.52  E-value=2.5e-14  Score=111.21  Aligned_cols=65  Identities=26%  Similarity=0.332  Sum_probs=60.9

Q ss_pred             hHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        177 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       177 g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ++.++++|+++|++++++|++||+++++++++++||||    +|+++++..+++|+++||+|++++++.
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   70 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYL   70 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999    566699999999999999999999865

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.50  E-value=3.4e-14  Score=114.64  Aligned_cols=73  Identities=25%  Similarity=0.336  Sum_probs=68.6

Q ss_pred             chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193        173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY  246 (340)
Q Consensus       173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~  246 (340)
                      ++.+++.++++|+++ ++++++|++||.++++++++++||||    +|+++++..+++|+++||+|++++++....|.
T Consensus         8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~   84 (89)
T 2wgm_A            8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPF   84 (89)
T ss_dssp             HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999 99999999999999999999999999    59999999999999999999999998877765

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.49  E-value=7.1e-14  Score=107.86  Aligned_cols=62  Identities=27%  Similarity=0.382  Sum_probs=58.1

Q ss_pred             HHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        180 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       180 ~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      .+++|+++|++++++|++||.++++++++++||||    +|+++++..+++|+++||+|++++++.
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999    555599999999999999999999764

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.47  E-value=1.6e-13  Score=108.53  Aligned_cols=65  Identities=20%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193        178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTT  242 (340)
Q Consensus       178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~  242 (340)
                      +..++++|++|++++++|++||.++++++++++||||    +++++++..+++|+++||+|++++++.-
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf   76 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999    6778999999999999999999998764

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.46  E-value=1.6e-13  Score=109.06  Aligned_cols=75  Identities=27%  Similarity=0.412  Sum_probs=70.3

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +.+++.++++|+++|+++++||++||+++++++++++|||+                       .++++++++++..+++
T Consensus         5 ~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe-----------------------~~~~l~~~~ii~~al~   61 (82)
T 2xqu_A            5 LTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPE-----------------------AEGKIRGTLLLSLAFM   61 (82)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------------------HhhhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998                       4678899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q psy11193        149 GIIAIYGLVVAVLISGAV  166 (340)
Q Consensus       149 EalaIYGLIiaili~~~i  166 (340)
                      |+++||++++++++....
T Consensus        62 Ea~ai~glvia~ll~f~~   79 (82)
T 2xqu_A           62 EALTIYGLVVALVLLFAN   79 (82)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999987753

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.41  E-value=3.7e-13  Score=104.65  Aligned_cols=70  Identities=31%  Similarity=0.541  Sum_probs=65.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHH
Q psy11193         72 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGII  151 (340)
Q Consensus        72 g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eal  151 (340)
                      ++.++++|+++|++++++|++||+++++++++++|||+                       ..+++++++++..+++|++
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~   58 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPE-----------------------LRPVLQTTMFIGVALVEAL   58 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-----------------------TTTHHHHHHHHHHHHHTHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HhhhHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998                       5778899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11193        152 AIYGLVVAVLISG  164 (340)
Q Consensus       152 aIYGLIiaili~~  164 (340)
                      +||++++++++..
T Consensus        59 ai~~lvia~lllf   71 (72)
T 1wu0_A           59 PIIGVVFSFIYLG   71 (72)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999763

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.38  E-value=1.6e-13  Score=106.70  Aligned_cols=65  Identities=28%  Similarity=0.332  Sum_probs=60.2

Q ss_pred             hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      ++++++++||++ ++++++|++||.++++++++++||||    +|+++++..+++|+++||+|++++++.
T Consensus         3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll   71 (72)
T 2xnd_J            3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL   71 (72)
T ss_dssp             TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999 99999999999999999999999998    677899999999999999999999864

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.37  E-value=1.3e-12  Score=100.76  Aligned_cols=66  Identities=33%  Similarity=0.555  Sum_probs=61.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHH
Q psy11193         75 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY  154 (340)
Q Consensus        75 ~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIY  154 (340)
                      ++++|+++|+++++||++||+++++++++++|||+                       .++++++++++..+++|+++||
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~ai~   59 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPE-----------------------LRGTLQTLMFIGVPLAEAVPII   59 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHhhHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999887                       4677888899999999999999


Q ss_pred             HHHHHHHHH
Q psy11193        155 GLVVAVLIS  163 (340)
Q Consensus       155 GLIiaili~  163 (340)
                      ++++++++.
T Consensus        60 ~lvia~lll   68 (69)
T 2x2v_A           60 AIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.36  E-value=9.9e-13  Score=106.09  Aligned_cols=74  Identities=26%  Similarity=0.423  Sum_probs=69.5

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +.+++.++++||++ ++++++|++||+++++++++++|||+                       .++++++++++..+++
T Consensus         9 ~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe-----------------------~~~~l~~~~ii~~al~   64 (89)
T 2wgm_A            9 VVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPE-----------------------AKGDIISTMVLGQAVA   64 (89)
T ss_dssp             HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch-----------------------HhhhHHHHHHHHHHHH
Confidence            57899999999999 99999999999999999999999998                       5788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q psy11193        149 GIIAIYGLVVAVLISGAV  166 (340)
Q Consensus       149 EalaIYGLIiaili~~~i  166 (340)
                      |+++||++++++++....
T Consensus        65 Ea~ai~glvia~lllf~~   82 (89)
T 2wgm_A           65 ESTGIYSLVIALILLYAN   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.34  E-value=3.7e-12  Score=100.69  Aligned_cols=70  Identities=23%  Similarity=0.415  Sum_probs=65.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193         73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA  152 (340)
Q Consensus        73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala  152 (340)
                      +.+++++|++|++++++|++||+++++++++++|||+                       ..+++++++++..+++|+++
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~a   64 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD-----------------------LIPLLRTQFFIVMGLVDAIP   64 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS-----------------------SSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHhhHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999998                       57889999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy11193        153 IYGLVVAVLISGA  165 (340)
Q Consensus       153 IYGLIiaili~~~  165 (340)
                      ||+|++++++...
T Consensus        65 i~glvia~lllf~   77 (79)
T 1a91_A           65 MIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998653

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.23  E-value=1.7e-11  Score=96.48  Aligned_cols=67  Identities=27%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193        174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT  241 (340)
Q Consensus       174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~  241 (340)
                      +..+.+.+++|+++ ++..++|++||.+.++.+++++||||    +|+.+++..++.|+++||+|++++++.
T Consensus         3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lll   73 (76)
T 4f4s_A            3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL   73 (76)
T ss_dssp             HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999998 99999999999999999999999996    799999999999999999999999875

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.21  E-value=1.9e-12  Score=100.70  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=64.0

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193         71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI  150 (340)
Q Consensus        71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea  150 (340)
                      +++.++++||++ ++++++|++||+++++++++++|||+                       ..+++++++++..+++|+
T Consensus         3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe-----------------------~~~~l~~~~~i~~al~Ea   58 (72)
T 2xnd_J            3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS-----------------------LKQQLFSYAILGFALSEA   58 (72)
T ss_dssp             TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSC-----------------------CCCCCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHHhHHHHHHHHHHHHHH
Confidence            456789999999 99999999999999999999999998                       578899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy11193        151 IAIYGLVVAVLIS  163 (340)
Q Consensus       151 laIYGLIiaili~  163 (340)
                      ++||++++++++.
T Consensus        59 ~~i~~lvia~lll   71 (72)
T 2xnd_J           59 MGLFCLMVAFLIL   71 (72)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999864

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=98.90  E-value=2.1e-09  Score=84.60  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=66.6

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +.....++++|+++ ++..++|+++|.+..+.+++++|||+                       .++++++..++..++.
T Consensus         3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~-----------------------~~~~l~~~~ilG~Al~   58 (76)
T 4f4s_A            3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPS-----------------------IKDTVFPMAILGFALS   58 (76)
T ss_dssp             HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChh-----------------------HHHhHHHHHHHHHHHH
Confidence            45677899999998 99999999999999999999999998                       5889999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11193        149 GIIAIYGLVVAVLISG  164 (340)
Q Consensus       149 EalaIYGLIiaili~~  164 (340)
                      |+.+||+|++++++..
T Consensus        59 Ea~glf~LvvA~lllF   74 (76)
T 4f4s_A           59 EATGLFCLMVSFLLLF   74 (76)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	2e-08
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	2e-06

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 177 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGPY 232
             +++ A + +G + + A   IGI+G   + G A+QP     L     +++   + +   
Sbjct: 7   DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMI 66

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 23/95 (24%)

Query: 72  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMS 131
             +++ A + +G + + A   IGI+G   + G A+QP                       
Sbjct: 7   DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD---------------------- 44

Query: 132 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 166
            + P L  +  I + +   I +  + + + +  AV
Sbjct: 45  -LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.47
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.32

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=6.1e-14  Score=109.30  Aligned_cols=71  Identities=18%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193        172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTT  242 (340)
Q Consensus       172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~  242 (340)
                      +++..++.++++|+++|++++++|+++|.+++++++++|||||    ++++|++..++.|+++||++++++++.-
T Consensus         2 e~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillF   76 (79)
T d1c99a_           2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466789999999999999999999999999999999999996    7999999999999999999999998763

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.8e-12  Score=100.94  Aligned_cols=74  Identities=22%  Similarity=0.375  Sum_probs=69.7

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193         69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA  148 (340)
Q Consensus        69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~  148 (340)
                      +..++.++++|+++|++++++|+++|+++++++++++|||+                       ..+++++++++...+.
T Consensus         4 ~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE-----------------------~~~~l~~~m~ig~al~   60 (79)
T d1c99a_           4 LNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD-----------------------LIPLLRTQFFIVMGLV   60 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----------------------HHHhHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999                       5889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy11193        149 GIIAIYGLVVAVLISGA  165 (340)
Q Consensus       149 EalaIYGLIiaili~~~  165 (340)
                      |+.+||++++++++...
T Consensus        61 Ea~~i~~lvialillFa   77 (79)
T d1c99a_          61 DAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998654